Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000125.t1 | RHN76102.1 | 86.3 | 95 | 13 | 0 | 10 | 104 | 264 | 358 | 1.50E-35 | 159.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000125.t1 | Q9XE58 | 50.0 | 92 | 44 | 1 | 13 | 102 | 362 | 453 | 1.6e-17 | 90.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000125.t1 | G7IRV1 | 86.3 | 95 | 13 | 0 | 10 | 104 | 336 | 430 | 1.1e-35 | 159.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene000125.t1 | TF | GRAS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000125.t1 | MTR_2g097410 | 86.316 | 95 | 13 | 0 | 10 | 104 | 336 | 430 | 9.85e-48 | 165 |
| MS.gene000125.t1 | MTR_3g087300 | 90.909 | 55 | 5 | 0 | 10 | 64 | 154 | 208 | 3.18e-27 | 102 |
| MS.gene000125.t1 | MTR_4g064150 | 62.667 | 75 | 28 | 0 | 24 | 98 | 340 | 414 | 9.06e-27 | 106 |
| MS.gene000125.t1 | MTR_4g064160 | 56.180 | 89 | 39 | 0 | 14 | 102 | 285 | 373 | 7.55e-25 | 100 |
| MS.gene000125.t1 | MTR_4g064120 | 57.500 | 80 | 32 | 1 | 26 | 103 | 235 | 314 | 9.37e-24 | 97.4 |
| MS.gene000125.t1 | MTR_7g062120 | 59.211 | 76 | 31 | 0 | 27 | 102 | 354 | 429 | 3.34e-23 | 95.9 |
| MS.gene000125.t1 | MTR_4g064180 | 60.000 | 70 | 28 | 0 | 26 | 95 | 235 | 304 | 4.86e-22 | 92.8 |
| MS.gene000125.t1 | MTR_2g097390 | 54.795 | 73 | 33 | 0 | 30 | 102 | 260 | 332 | 8.56e-22 | 92.0 |
| MS.gene000125.t1 | MTR_2g097350 | 54.167 | 72 | 33 | 0 | 31 | 102 | 260 | 331 | 3.39e-21 | 90.1 |
| MS.gene000125.t1 | MTR_2g097310 | 56.338 | 71 | 28 | 1 | 35 | 102 | 259 | 329 | 4.57e-20 | 87.0 |
| MS.gene000125.t1 | MTR_2g097463 | 69.811 | 53 | 16 | 0 | 39 | 91 | 284 | 336 | 4.20e-17 | 78.6 |
| MS.gene000125.t1 | MTR_2g097467 | 50.602 | 83 | 35 | 3 | 31 | 108 | 273 | 354 | 7.26e-16 | 74.7 |
| MS.gene000125.t1 | MTR_4g064200 | 58.462 | 65 | 26 | 1 | 40 | 104 | 279 | 342 | 1.14e-15 | 74.3 |
| MS.gene000125.t1 | MTR_2g097473 | 58.730 | 63 | 25 | 1 | 40 | 102 | 284 | 345 | 3.86e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000125.t1 | AT1G07530 | 50.000 | 92 | 44 | 1 | 13 | 102 | 362 | 453 | 1.07e-22 | 94.7 |
| MS.gene000125.t1 | AT1G07520 | 51.648 | 91 | 42 | 1 | 9 | 97 | 280 | 370 | 2.78e-19 | 84.7 |
| MS.gene000125.t1 | AT1G07520 | 51.648 | 91 | 42 | 1 | 9 | 97 | 281 | 371 | 2.83e-19 | 84.7 |
| MS.gene000125.t1 | AT1G07520 | 51.648 | 91 | 42 | 1 | 9 | 97 | 116 | 206 | 3.17e-19 | 84.3 |
| MS.gene000125.t1 | AT1G07520 | 51.648 | 91 | 42 | 1 | 9 | 97 | 116 | 206 | 3.17e-19 | 84.3 |
| MS.gene000125.t1 | AT2G37650 | 57.143 | 70 | 30 | 0 | 33 | 102 | 335 | 404 | 6.46e-19 | 83.6 |
| MS.gene000125.t1 | AT2G37650 | 57.143 | 70 | 30 | 0 | 33 | 102 | 323 | 392 | 6.88e-19 | 83.6 |
| MS.gene000125.t1 | AT2G29060 | 50.000 | 78 | 39 | 0 | 25 | 102 | 264 | 341 | 2.26e-18 | 82.0 |
| MS.gene000125.t1 | AT2G29060 | 50.000 | 78 | 39 | 0 | 25 | 102 | 301 | 378 | 2.39e-18 | 82.0 |
| MS.gene000125.t1 | AT4G39630 | 52.941 | 68 | 32 | 0 | 112 | 179 | 136 | 203 | 6.64e-18 | 78.2 |
| MS.gene000125.t1 | AT4G39630 | 52.941 | 68 | 32 | 0 | 112 | 179 | 149 | 216 | 7.77e-18 | 78.2 |
| MS.gene000125.t1 | AT2G29065 | 59.322 | 59 | 24 | 0 | 39 | 97 | 246 | 304 | 4.48e-14 | 69.7 |
| MS.gene000125.t1 | AT5G59450 | 47.826 | 69 | 36 | 0 | 28 | 96 | 210 | 278 | 1.44e-13 | 68.2 |
| MS.gene000125.t1 | AT3G46600 | 45.833 | 72 | 39 | 0 | 26 | 97 | 161 | 232 | 1.59e-12 | 65.1 |
| MS.gene000125.t1 | AT3G46600 | 45.833 | 72 | 39 | 0 | 26 | 97 | 193 | 264 | 1.59e-12 | 65.1 |
Find 51 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGGAACCCGAAGTGTTT+TGG | 0.200607 | 5.4:+1652806 | None:intergenic |
| TGTCCTTGTAAACACCTATA+GGG | 0.303257 | 5.4:+1652749 | None:intergenic |
| AGGAAGCATTCTTGTCCTTC+AGG | 0.304700 | 5.4:-1653802 | MS.gene000125:CDS |
| GGCAGTTACTTTCTTGCCTC+AGG | 0.350572 | 5.4:-1653623 | MS.gene000125:CDS |
| ATGAATTGTTGAAGCAGATT+AGG | 0.368680 | 5.4:-1653822 | MS.gene000125:CDS |
| TGTGGATTTGAGGACCCTTT+TGG | 0.385294 | 5.4:-1653890 | MS.gene000125:CDS |
| CAGGTTCTACATGGTGCATC+TGG | 0.398474 | 5.4:-1654076 | MS.gene000125:intron |
| ACAGGGAGAACAAGCTTTGT+TGG | 0.399351 | 5.4:-1653425 | MS.gene000125:intron |
| CTGTGTCTGCTAATGACAAT+AGG | 0.426533 | 5.4:-1653852 | MS.gene000125:CDS |
| TGTCCATGGATCACCCCTAT+AGG | 0.428177 | 5.4:-1652763 | None:intergenic |
| GAGATGCTTCTTTCTGTCCA+TGG | 0.428796 | 5.4:-1652777 | MS.gene000125:CDS |
| AGAAGCATCTCTCCAGGCTT+GGG | 0.431925 | 5.4:+1652789 | None:intergenic |
| ACACTTCGGGTTCCCAAGCC+TGG | 0.435882 | 5.4:-1652801 | MS.gene000125:CDS |
| GTCTATTGTATAGGCTTTGG+AGG | 0.440001 | 5.4:-1653034 | MS.gene000125:intron |
| GATGACACCCAAAACACTTC+GGG | 0.448978 | 5.4:-1652814 | MS.gene000125:CDS |
| AGAGGGATGTTGTGGATTTG+AGG | 0.451718 | 5.4:-1653900 | MS.gene000125:CDS |
| TGCTGATAATCTGTGTTTCA+AGG | 0.456022 | 5.4:-1653402 | MS.gene000125:CDS |
| AAGAAGCATCTCTCCAGGCT+TGG | 0.457854 | 5.4:+1652788 | None:intergenic |
| ACACAGGTTGGTGAACTTGA+TGG | 0.468419 | 5.4:-1653955 | MS.gene000125:CDS |
| CAAGAAGGTCTTCTGACTCC+TGG | 0.484397 | 5.4:-1652982 | MS.gene000125:CDS |
| CGAAGAAACAAGGGAGGAAG+AGG | 0.489890 | 5.4:-1653918 | MS.gene000125:CDS |
| CTCATGGTTGGTGCTGGTAA+CGG | 0.511296 | 5.4:-1653730 | MS.gene000125:intron |
| AGGTGATGCATCACAGAGAA+AGG | 0.524723 | 5.4:-1653782 | MS.gene000125:CDS |
| AGGGAGGAAGAGGGATGTTG+TGG | 0.530372 | 5.4:-1653908 | MS.gene000125:CDS |
| GGATGACACCCAAAACACTT+CGG | 0.531639 | 5.4:-1652815 | MS.gene000125:CDS |
| CTCTGTGATGCATCACCTGA+AGG | 0.537655 | 5.4:+1653787 | None:intergenic |
| GAAGCGCTCATGGTTGGTGC+TGG | 0.539724 | 5.4:-1653736 | MS.gene000125:CDS |
| GCAGTTACTTTCTTGCCTCA+GGG | 0.540939 | 5.4:-1653622 | MS.gene000125:CDS |
| CTTGTGCACACAGAACCAAA+AGG | 0.550869 | 5.4:+1653875 | None:intergenic |
| ACAGAAAGAAGCATCTCTCC+AGG | 0.551277 | 5.4:+1652783 | None:intergenic |
| TGCAAAGATTGAAAATGTTG+AGG | 0.562117 | 5.4:-1654178 | None:intergenic |
| TTGTGCACACAGAACCAAAA+GGG | 0.577974 | 5.4:+1653876 | None:intergenic |
| TAATGCGATTGAAGCGCTCA+TGG | 0.598596 | 5.4:-1653746 | MS.gene000125:CDS |
| AGTTACTTTCTTGCCTCAGG+GGG | 0.601989 | 5.4:-1653620 | MS.gene000125:CDS |
| GCGATTGAAGCGCTCATGGT+TGG | 0.605684 | 5.4:-1653742 | MS.gene000125:CDS |
| TGGTGAACTTGATGGAGGGA+AGG | 0.610203 | 5.4:-1653947 | MS.gene000125:CDS |
| AAGGCGTGTTCGAAGAAACA+AGG | 0.613184 | 5.4:-1653928 | MS.gene000125:CDS |
| ACACCTATAGGGGTGATCCA+TGG | 0.613673 | 5.4:+1652760 | None:intergenic |
| CAGATGTTAGCGATGCAAGA+AGG | 0.615125 | 5.4:-1652997 | MS.gene000125:CDS |
| GTCCTTGTAAACACCTATAG+GGG | 0.623652 | 5.4:+1652750 | None:intergenic |
| CAGTTACTTTCTTGCCTCAG+GGG | 0.626731 | 5.4:-1653621 | MS.gene000125:CDS |
| GCTAACATCTGAGTTTCAGA+TGG | 0.626740 | 5.4:+1653009 | None:intergenic |
| CAGGTTGGTGAACTTGATGG+AGG | 0.633962 | 5.4:-1653952 | MS.gene000125:CDS |
| ACAAAAGGATGGATCAGTGG+TGG | 0.638622 | 5.4:-1653986 | MS.gene000125:intron |
| AGGTTGGTGAACTTGATGGA+GGG | 0.640702 | 5.4:-1653951 | MS.gene000125:CDS |
| GAAGAAACAAGGGAGGAAGA+GGG | 0.647199 | 5.4:-1653917 | MS.gene000125:CDS |
| AGTGGTGGAGAGTAGAACAC+AGG | 0.692386 | 5.4:-1653971 | MS.gene000125:CDS |
| TGAACAAAAGGATGGATCAG+TGG | 0.692488 | 5.4:-1653989 | MS.gene000125:intron |
| GTGGAGAGTAGAACACAGGT+TGG | 0.695448 | 5.4:-1653967 | MS.gene000125:CDS |
| AGGCGTGTTCGAAGAAACAA+GGG | 0.708111 | 5.4:-1653927 | MS.gene000125:CDS |
| CGTGTTCGAAGAAACAAGGG+AGG | 0.726425 | 5.4:-1653924 | MS.gene000125:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTATTTAAATTTCTACA+TGG | - | chr5.4:1653441-1653460 | MS.gene000125:intron | 15.0% |
| !! | AGATTATCCATGAATTTAAA+AGG | - | chr5.4:1653842-1653861 | MS.gene000125:CDS | 20.0% |
| !! | ATTGGATATAATATTTGTCA+TGG | - | chr5.4:1652796-1652815 | MS.gene000125:CDS | 20.0% |
| !! | TGATTTAATGTCTATTGTAT+AGG | - | chr5.4:1653885-1653904 | MS.gene000125:CDS | 20.0% |
| !!! | AACATTTCCTTTTAAATTCA+TGG | + | chr5.4:1653852-1653871 | None:intergenic | 20.0% |
| !!! | TTACTTTTTGTGACAAAAAT+AGG | - | chr5.4:1653754-1653773 | MS.gene000125:CDS | 20.0% |
| !!! | TTTGTGATTTTGATTGTAAA+AGG | - | chr5.4:1653284-1653303 | MS.gene000125:intron | 20.0% |
| ! | AGTTCATTTAAATGAAATGC+AGG | + | chr5.4:1653989-1654008 | None:intergenic | 25.0% |
| ! | GTACAGAAATTTGAATTCAT+TGG | - | chr5.4:1652878-1652897 | MS.gene000125:intron | 25.0% |
| ! | GTCTTATAAGCTAACTTTAT+TGG | - | chr5.4:1653379-1653398 | MS.gene000125:intron | 25.0% |
| ! | TATGTAATATTTAAGCCATG+AGG | + | chr5.4:1653640-1653659 | None:intergenic | 25.0% |
| !! | TTTTCTTTTTGTAAGTTGCA+TGG | + | chr5.4:1652904-1652923 | None:intergenic | 25.0% |
| !!! | GATATGTTTTTGAGTGTAAA+AGG | - | chr5.4:1654011-1654030 | MS.gene000125:intron | 25.0% |
| AAAATAGGTTGTGAAACATG+AGG | - | chr5.4:1653769-1653788 | MS.gene000125:CDS | 30.0% | |
| AAATAGGTTGTGAAACATGA+GGG | - | chr5.4:1653770-1653789 | MS.gene000125:CDS | 30.0% | |
| AAGCATATTTATGTACCTCA+TGG | - | chr5.4:1653622-1653641 | MS.gene000125:CDS | 30.0% | |
| AATGTCTATTGTATAGGCTT+TGG | - | chr5.4:1653891-1653910 | MS.gene000125:CDS | 30.0% | |
| ACCTTTCATCATCATATAGA+TGG | + | chr5.4:1653349-1653368 | None:intergenic | 30.0% | |
| ATGAATTGTTGAAGCAGATT+AGG | - | chr5.4:1653106-1653125 | MS.gene000125:intron | 30.0% | |
| CATTTAAATGAAATGCAGGA+AGG | + | chr5.4:1653985-1654004 | None:intergenic | 30.0% | |
| TGCATTTCTTCATTGTGTAT+TGG | - | chr5.4:1652778-1652797 | MS.gene000125:CDS | 30.0% | |
| ! | AATCAGCACTAAACATCTTT+TGG | + | chr5.4:1653245-1653264 | None:intergenic | 30.0% |
| ! | TCCATCTATATGATGATGAA+AGG | - | chr5.4:1653345-1653364 | MS.gene000125:intron | 30.0% |
| !! | CAGTTACTTTCATTTTGACA+GGG | - | chr5.4:1653486-1653505 | MS.gene000125:intron | 30.0% |
| !! | TCAGTTACTTTCATTTTGAC+AGG | - | chr5.4:1653485-1653504 | MS.gene000125:intron | 30.0% |
| !!! | CGTAAAATGTTTTTTGCTAC+AGG | - | chr5.4:1652833-1652852 | MS.gene000125:CDS | 30.0% |
| GATCATGTTACAGAAACGAA+CGG | + | chr5.4:1653821-1653840 | None:intergenic | 35.0% | |
| GTGTAAAAGGTTGTCACAAA+TGG | - | chr5.4:1654024-1654043 | MS.gene000125:intron | 35.0% | |
| TGCTGATAATCTGTGTTTCA+AGG | - | chr5.4:1653526-1653545 | MS.gene000125:intron | 35.0% | |
| ! | TTTTTGCTACAGGTTCTACA+TGG | - | chr5.4:1652843-1652862 | MS.gene000125:CDS | 35.0% |
| !! | TAGTTAGCGTTGATAATCGT+AGG | - | chr5.4:1653726-1653745 | MS.gene000125:intron | 35.0% |
| !!! | AGTGCTGATTTTGATTGTGT+GGG | - | chr5.4:1653255-1653274 | MS.gene000125:intron | 35.0% |
| !!! | TAGTGCTGATTTTGATTGTG+TGG | - | chr5.4:1653254-1653273 | MS.gene000125:intron | 35.0% |
| ATACCTTTGGATCACTTGCA+AGG | - | chr5.4:1653590-1653609 | MS.gene000125:intron | 40.0% | |
| CTGTGTCTGCTAATGACAAT+AGG | - | chr5.4:1653076-1653095 | MS.gene000125:intron | 40.0% | |
| GCTAACATCTGAGTTTCAGA+TGG | + | chr5.4:1653922-1653941 | None:intergenic | 40.0% | |
| GCTGTTAACTCTTCAGTTGA+AGG | + | chr5.4:1654050-1654069 | None:intergenic | 40.0% | |
| TATCCTTGCAAGTGATCCAA+AGG | + | chr5.4:1653596-1653615 | None:intergenic | 40.0% | |
| TGAACAAAAGGATGGATCAG+TGG | - | chr5.4:1652939-1652958 | MS.gene000125:intron | 40.0% | |
| TTGGATCACTTGCAAGGATA+TGG | - | chr5.4:1653596-1653615 | MS.gene000125:intron | 40.0% | |
| TTGTGCACACAGAACCAAAA+GGG | + | chr5.4:1653055-1653074 | None:intergenic | 40.0% | |
| TTGTGTGCTGAACAAAAGGA+TGG | - | chr5.4:1652931-1652950 | MS.gene000125:intron | 40.0% | |
| ! | AGTAGTCAGAGGTTTTCTGT+TGG | - | chr5.4:1654091-1654110 | MS.gene000125:intron | 40.0% |
| ! | GTAGTCAGAGGTTTTCTGTT+GGG | - | chr5.4:1654092-1654111 | MS.gene000125:intron | 40.0% |
| ! | GTCTATTGTATAGGCTTTGG+AGG | - | chr5.4:1653894-1653913 | MS.gene000125:CDS | 40.0% |
| AAGGCGTGTTCGAAGAAACA+AGG | - | chr5.4:1653000-1653019 | MS.gene000125:CDS | 45.0% | |
| ACAAAAGGATGGATCAGTGG+TGG | - | chr5.4:1652942-1652961 | MS.gene000125:intron | 45.0% | |
| AGAGGGATGTTGTGGATTTG+AGG | - | chr5.4:1653028-1653047 | MS.gene000125:intron | 45.0% | |
| AGGCGTGTTCGAAGAAACAA+GGG | - | chr5.4:1653001-1653020 | MS.gene000125:CDS | 45.0% | |
| AGGTGATGCATCACAGAGAA+AGG | - | chr5.4:1653146-1653165 | MS.gene000125:intron | 45.0% | |
| CAGATGTTAGCGATGCAAGA+AGG | - | chr5.4:1653931-1653950 | MS.gene000125:CDS | 45.0% | |
| CTGCTACACTCACATACCTT+TGG | - | chr5.4:1653577-1653596 | MS.gene000125:intron | 45.0% | |
| CTTGTGCACACAGAACCAAA+AGG | + | chr5.4:1653056-1653075 | None:intergenic | 45.0% | |
| GAAGAAACAAGGGAGGAAGA+GGG | - | chr5.4:1653011-1653030 | MS.gene000125:CDS | 45.0% | |
| GAAGGAGAGATACTTACACC+AGG | + | chr5.4:1653967-1653986 | None:intergenic | 45.0% | |
| GAGATGCTTCTTTCTGTCCA+TGG | - | chr5.4:1654151-1654170 | MS.gene000125:intron | 45.0% | |
| GATGACACCCAAAACACTTC+GGG | - | chr5.4:1654114-1654133 | MS.gene000125:intron | 45.0% | |
| GGATGACACCCAAAACACTT+CGG | - | chr5.4:1654113-1654132 | MS.gene000125:intron | 45.0% | |
| GTCGTTGTGTGCTGAACAAA+AGG | - | chr5.4:1652927-1652946 | MS.gene000125:intron | 45.0% | |
| ! | ACAGGGAGAACAAGCTTTGT+TGG | - | chr5.4:1653503-1653522 | MS.gene000125:intron | 45.0% |
| ! | ACTTTATTGGCTGCAAGCTC+AGG | - | chr5.4:1653392-1653411 | MS.gene000125:intron | 45.0% |
| ! | AGTTACTTTCTTGCCTCAGG+GGG | - | chr5.4:1653308-1653327 | MS.gene000125:intron | 45.0% |
| ! | CAGCTGAATATGCGTTTTGC+AGG | - | chr5.4:1654066-1654085 | MS.gene000125:intron | 45.0% |
| ! | CAGTTACTTTCTTGCCTCAG+GGG | - | chr5.4:1653307-1653326 | MS.gene000125:intron | 45.0% |
| ! | CTTTATTGGCTGCAAGCTCA+GGG | - | chr5.4:1653393-1653412 | MS.gene000125:intron | 45.0% |
| ! | GCAGTTACTTTCTTGCCTCA+GGG | - | chr5.4:1653306-1653325 | MS.gene000125:intron | 45.0% |
| ! | TAATGCGATTGAAGCGCTCA+TGG | - | chr5.4:1653182-1653201 | MS.gene000125:intron | 45.0% |
| ! | TGTGGATTTGAGGACCCTTT+TGG | - | chr5.4:1653038-1653057 | MS.gene000125:intron | 45.0% |
| ! | TTTTGCAGGTGAGTAGTCAG+AGG | - | chr5.4:1654080-1654099 | MS.gene000125:intron | 45.0% |
| !! | ACACAGGTTGGTGAACTTGA+TGG | - | chr5.4:1652973-1652992 | MS.gene000125:intron | 45.0% |
| !! | ACAGAAAGAAGCATCTCTCC+AGG | + | chr5.4:1654148-1654167 | None:intergenic | 45.0% |
| !! | AGGAAGCATTCTTGTCCTTC+AGG | - | chr5.4:1653126-1653145 | MS.gene000125:intron | 45.0% |
| !! | AGGTTGGTGAACTTGATGGA+GGG | - | chr5.4:1652977-1652996 | MS.gene000125:intron | 45.0% |
| !! | TTGGGAACCCGAAGTGTTTT+GGG | + | chr5.4:1654124-1654143 | None:intergenic | 45.0% |
| CAAGAAGGTCTTCTGACTCC+TGG | - | chr5.4:1653946-1653965 | MS.gene000125:CDS | 50.0% | |
| CAGGTTCTACATGGTGCATC+TGG | - | chr5.4:1652852-1652871 | MS.gene000125:intron | 50.0% | |
| CGAAGAAACAAGGGAGGAAG+AGG | - | chr5.4:1653010-1653029 | MS.gene000125:CDS | 50.0% | |
| CGTGTTCGAAGAAACAAGGG+AGG | - | chr5.4:1653004-1653023 | MS.gene000125:CDS | 50.0% | |
| CTCTGTGATGCATCACCTGA+AGG | + | chr5.4:1653144-1653163 | None:intergenic | 50.0% | |
| GTGGAGAGTAGAACACAGGT+TGG | - | chr5.4:1652961-1652980 | MS.gene000125:intron | 50.0% | |
| TGGTGAACTTGATGGAGGGA+AGG | - | chr5.4:1652981-1653000 | MS.gene000125:CDS | 50.0% | |
| ! | AGTGGTGGAGAGTAGAACAC+AGG | - | chr5.4:1652957-1652976 | MS.gene000125:intron | 50.0% |
| ! | GGCAGTTACTTTCTTGCCTC+AGG | - | chr5.4:1653305-1653324 | MS.gene000125:intron | 50.0% |
| !! | AAGAAGCATCTCTCCAGGCT+TGG | + | chr5.4:1654143-1654162 | None:intergenic | 50.0% |
| !! | AGAAGCATCTCTCCAGGCTT+GGG | + | chr5.4:1654142-1654161 | None:intergenic | 50.0% |
| !! | CAGGTTGGTGAACTTGATGG+AGG | - | chr5.4:1652976-1652995 | MS.gene000125:intron | 50.0% |
| !! | CTCATGGTTGGTGCTGGTAA+CGG | - | chr5.4:1653198-1653217 | MS.gene000125:intron | 50.0% |
| !! | CTTGGGAACCCGAAGTGTTT+TGG | + | chr5.4:1654125-1654144 | None:intergenic | 50.0% |
| AGGGAGGAAGAGGGATGTTG+TGG | - | chr5.4:1653020-1653039 | MS.gene000125:CDS | 55.0% | |
| CATACAATCTCGTCCCCCTG+AGG | + | chr5.4:1653324-1653343 | None:intergenic | 55.0% | |
| ! | GCGATTGAAGCGCTCATGGT+TGG | - | chr5.4:1653186-1653205 | MS.gene000125:intron | 55.0% |
| ! | ACACTTCGGGTTCCCAAGCC+TGG | - | chr5.4:1654127-1654146 | MS.gene000125:intron | 60.0% |
| ! | GAAGCGCTCATGGTTGGTGC+TGG | - | chr5.4:1653192-1653211 | MS.gene000125:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 1652764 | 1654186 | 1652764 | ID=MS.gene000125 |
| chr5.4 | mRNA | 1652764 | 1654186 | 1652764 | ID=MS.gene000125.t1;Parent=MS.gene000125 |
| chr5.4 | exon | 1654179 | 1654186 | 1654179 | ID=MS.gene000125.t1.exon1;Parent=MS.gene000125.t1 |
| chr5.4 | CDS | 1654179 | 1654186 | 1654179 | ID=cds.MS.gene000125.t1;Parent=MS.gene000125.t1 |
| chr5.4 | exon | 1654077 | 1654095 | 1654077 | ID=MS.gene000125.t1.exon2;Parent=MS.gene000125.t1 |
| chr5.4 | CDS | 1654077 | 1654095 | 1654077 | ID=cds.MS.gene000125.t1;Parent=MS.gene000125.t1 |
| chr5.4 | exon | 1653731 | 1654001 | 1653731 | ID=MS.gene000125.t1.exon3;Parent=MS.gene000125.t1 |
| chr5.4 | CDS | 1653731 | 1654001 | 1653731 | ID=cds.MS.gene000125.t1;Parent=MS.gene000125.t1 |
| chr5.4 | exon | 1653612 | 1653644 | 1653612 | ID=MS.gene000125.t1.exon4;Parent=MS.gene000125.t1 |
| chr5.4 | CDS | 1653612 | 1653644 | 1653612 | ID=cds.MS.gene000125.t1;Parent=MS.gene000125.t1 |
| chr5.4 | exon | 1653397 | 1653443 | 1653397 | ID=MS.gene000125.t1.exon5;Parent=MS.gene000125.t1 |
| chr5.4 | CDS | 1653397 | 1653443 | 1653397 | ID=cds.MS.gene000125.t1;Parent=MS.gene000125.t1 |
| chr5.4 | exon | 1652981 | 1653043 | 1652981 | ID=MS.gene000125.t1.exon6;Parent=MS.gene000125.t1 |
| chr5.4 | CDS | 1652981 | 1653043 | 1652981 | ID=cds.MS.gene000125.t1;Parent=MS.gene000125.t1 |
| chr5.4 | exon | 1652764 | 1652862 | 1652764 | ID=MS.gene000125.t1.exon7;Parent=MS.gene000125.t1 |
| chr5.4 | CDS | 1652764 | 1652862 | 1652764 | ID=cds.MS.gene000125.t1;Parent=MS.gene000125.t1 |
| Gene Sequence |
| Protein sequence |
