AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene000218

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000218.t1 MTR_6g034945 98.065 310 6 0 1 310 1 310 0.0 621
MS.gene000218.t1 MTR_5g075390 52.459 244 84 9 26 261 49 268 8.40e-61 197
MS.gene000218.t1 MTR_3g467120 44.369 293 107 14 26 281 36 309 1.66e-51 174
MS.gene000218.t1 MTR_4g072090 57.714 175 66 3 76 243 279 452 2.72e-49 171
MS.gene000218.t1 MTR_3g094020 49.541 218 84 6 28 243 7 200 5.12e-49 166
MS.gene000218.t1 MTR_2g099050 57.143 168 57 4 107 260 168 334 6.02e-47 163
MS.gene000218.t1 MTR_4g072090 56.442 163 63 3 76 231 279 440 1.86e-43 154
MS.gene000218.t1 MTR_1g023690 47.273 220 97 7 74 281 303 515 2.05e-33 129
MS.gene000218.t1 MTR_2g090900 47.000 100 53 0 149 248 189 288 8.42e-19 85.5
MS.gene000218.t1 MTR_4g079500 43.103 116 59 1 149 257 192 307 1.15e-18 85.1
MS.gene000218.t1 MTR_2g090900 47.000 100 53 0 149 248 189 288 1.16e-18 85.5
MS.gene000218.t1 MTR_1g099030 35.000 220 126 6 31 245 11 218 4.97e-18 82.8
MS.gene000218.t1 MTR_8g088650 30.153 262 141 11 11 244 75 322 1.76e-13 70.5
MS.gene000218.t1 MTR_0405s0060 47.619 84 37 2 100 182 78 155 3.43e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000218.t1 AT1G43700 45.345 333 123 13 8 287 6 332 1.37e-66 212
MS.gene000218.t1 AT2G31370 60.479 167 55 3 109 265 151 316 7.93e-51 172
MS.gene000218.t1 AT2G31370 60.479 167 55 3 109 265 151 316 1.99e-50 172
MS.gene000218.t1 AT2G31370 60.479 167 55 3 109 265 151 316 1.99e-50 172
MS.gene000218.t1 AT2G31370 60.479 167 55 3 109 265 151 316 1.99e-50 172
MS.gene000218.t1 AT2G31370 60.479 167 55 3 109 265 151 316 1.99e-50 172
MS.gene000218.t1 AT2G31370 60.479 167 55 3 109 265 151 316 1.99e-50 172
MS.gene000218.t1 AT2G31370 60.479 167 55 3 109 265 151 316 1.99e-50 172
MS.gene000218.t1 AT2G40620 46.000 250 110 8 2 243 8 240 4.11e-49 167
MS.gene000218.t1 AT4G38900 55.497 191 62 5 73 243 299 486 4.19e-49 172
MS.gene000218.t1 AT4G38900 55.497 191 62 5 73 243 299 486 4.19e-49 172
MS.gene000218.t1 AT4G38900 53.807 197 62 6 73 243 299 492 1.31e-46 165
MS.gene000218.t1 AT1G06070 54.598 174 63 3 109 273 159 325 1.14e-45 160
MS.gene000218.t1 AT1G06850 62.791 129 47 1 123 251 121 248 2.77e-45 157
MS.gene000218.t1 AT2G21230 54.444 180 66 3 76 243 287 462 1.43e-44 159
MS.gene000218.t1 AT2G21230 54.444 180 66 3 76 243 287 462 1.43e-44 159
MS.gene000218.t1 AT2G21230 52.688 186 66 4 76 243 287 468 2.52e-42 153
MS.gene000218.t1 AT2G21230 53.846 169 62 3 76 232 287 451 3.47e-40 146
MS.gene000218.t1 AT1G06850 72.152 79 21 1 123 201 121 198 7.96e-28 108
MS.gene000218.t1 AT2G13150 35.503 169 93 4 83 244 83 242 6.63e-19 84.7
MS.gene000218.t1 AT2G42380 46.465 99 53 0 149 247 184 282 7.89e-19 85.5
MS.gene000218.t1 AT3G58120 47.368 95 50 0 149 243 200 294 1.41e-18 85.1
MS.gene000218.t1 AT2G12940 32.597 181 108 5 83 260 82 251 1.63e-17 81.6
MS.gene000218.t1 AT2G12900 38.235 102 62 1 143 244 109 209 3.05e-16 77.4
MS.gene000218.t1 AT2G42380 45.238 84 46 0 149 232 184 267 5.40e-15 73.9
MS.gene000218.t1 AT3G58120 45.679 81 44 0 149 229 200 280 5.38e-14 71.2
MS.gene000218.t1 AT1G58110 28.571 252 135 7 22 244 87 322 5.12e-13 69.3
MS.gene000218.t1 AT1G58110 28.571 252 135 7 22 244 87 322 5.12e-13 69.3
MS.gene000218.t1 AT2G21235 38.235 102 62 1 151 252 359 459 1.26e-12 68.6
MS.gene000218.t1 AT2G42380 41.414 99 47 1 149 247 184 271 1.45e-12 67.4
MS.gene000218.t1 AT2G42380 64.444 45 16 0 149 193 184 228 1.77e-11 63.5
MS.gene000218.t1 AT2G42380 64.444 45 16 0 149 193 184 228 1.77e-11 63.5

Find 89 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGCCAGGTTGTGTCTGC+TGG 0.238257 6.3:+26328389 None:intergenic
TTGATCCTAAGAGAGCTAAA+AGG 0.339939 6.3:-26333183 MS.gene000218:intron
CGTCTGAGGGACGGCATCTC+AGG 0.343810 6.3:-26333396 MS.gene000218:CDS
TGATTTGACTGCTCAGAATA+AGG 0.343859 6.3:-26329117 MS.gene000218:CDS
AATCATTTGGCTGCCGTTGC+CGG 0.347670 6.3:-26328487 MS.gene000218:CDS
GGGTTAGGGTTTGGTGGTGA+AGG 0.352329 6.3:-26333343 MS.gene000218:CDS
GAGTCCATCGGGACAGCGTC+AGG 0.359931 6.3:+26333442 None:intergenic
CCCGTTAAATGAAGGATTAC+CGG 0.363659 6.3:+26328468 None:intergenic
TGTTGTATACGATCTACTTT+TGG 0.365809 6.3:+26328302 None:intergenic
GTCTGAGATGGGGTTGTTTG+AGG 0.370079 6.3:-26333263 MS.gene000218:CDS
GCCGGTAATCCTTCATTTAA+CGG 0.378261 6.3:-26328469 MS.gene000218:CDS
TTTGATGGGTTAGGGTTTGG+TGG 0.386396 6.3:-26333349 MS.gene000218:CDS
GGTTAGGGTTTGGTGGTGAA+GGG 0.395694 6.3:-26333342 MS.gene000218:CDS
TGCACAACTTACAGTCCTTC+AGG 0.397567 6.3:-26331506 MS.gene000218:intron
AGAAAGAACTTCAACGCCTT+AGG 0.400050 6.3:-26328519 MS.gene000218:CDS
CCGGTAATCCTTCATTTAAC+GGG 0.400994 6.3:-26328468 MS.gene000218:CDS
CTGAGTGAGAACGGCGGTGG+TGG 0.401141 6.3:+26333554 None:intergenic
GGGTTGTTTGAGGTTGGTGA+TGG 0.408636 6.3:-26333253 MS.gene000218:CDS
TCGTGGTCGCTCTAACTTCA+TGG 0.412681 6.3:-26328335 MS.gene000218:CDS
GAGATGGGGTTGTTTGAGGT+TGG 0.424470 6.3:-26333259 MS.gene000218:CDS
GTTAGGGTTTGGTGGTGAAG+GGG 0.427763 6.3:-26333341 MS.gene000218:CDS
CATGCCAGGTTGTGTCTGCT+GGG 0.434483 6.3:+26328390 None:intergenic
ACAGCGTCAGGGGACGGAAG+AGG 0.437721 6.3:+26333454 None:intergenic
GGTTGTGTCTGCTGGGGTTG+AGG 0.447864 6.3:+26328397 None:intergenic
TAGGGCGCAAAAGAATCATT+TGG 0.455099 6.3:-26328500 MS.gene000218:CDS
CAGCGTCAGGGGACGGAAGA+GGG 0.460154 6.3:+26333455 None:intergenic
GAACGAGAAGGCGGCATGCC+AGG 0.461441 6.3:+26328376 None:intergenic
GAAAGAACTTCAACGCCTTA+GGG 0.472203 6.3:-26328518 MS.gene000218:CDS
TCGATGGATGGGTCTGAGAT+GGG 0.474377 6.3:-26333274 MS.gene000218:CDS
TTCGATGGATGGGTCTGAGA+TGG 0.478441 6.3:-26333275 MS.gene000218:CDS
AGGGGACGGAAGAGGGAGGT+TGG 0.483008 6.3:+26333462 None:intergenic
AAGTCAATTATAACTGGTGG+TGG 0.495733 6.3:+26333604 None:intergenic
GTCCCCTGACGCTGTCCCGA+TGG 0.496675 6.3:-26333446 MS.gene000218:CDS
AGAGGAAGGTGAGTAGACAT+AGG 0.498750 6.3:-26333306 MS.gene000218:CDS
GGAGAAAGTTGAAGAGAGGA+AGG 0.499134 6.3:-26333320 MS.gene000218:CDS
ATCGAAGTCGGACGGGTCGA+AGG 0.500424 6.3:+26333489 None:intergenic
GAGAACATCCCGTTAAATGA+AGG 0.504928 6.3:+26328460 None:intergenic
CATCGGGAAGTCAGCGTCTG+AGG 0.506258 6.3:-26333410 MS.gene000218:CDS
CGGTGGTGGGTCCCACGTGA+TGG 0.512907 6.3:+26333568 None:intergenic
CGTCGAAGTTAGCTGCGAAA+CGG 0.514192 6.3:+26333521 None:intergenic
AGAGCGACCACGACCGTTGA+AGG 0.516566 6.3:+26328345 None:intergenic
GATCAACCCTTCAACGGTCG+TGG 0.516911 6.3:-26328352 MS.gene000218:CDS
CAACCCCAGCAGACACAACC+TGG 0.516981 6.3:-26328394 MS.gene000218:CDS
AACTCGATATACAAGTGAGC+TGG 0.519563 6.3:-26331572 MS.gene000218:CDS
ATCGGGACAGCGTCAGGGGA+CGG 0.525014 6.3:+26333448 None:intergenic
TGGACTCATCAGAGTCCATC+GGG 0.530528 6.3:+26333431 None:intergenic
AGGATTACTCATCTGTTGCA+TGG 0.537744 6.3:+26328417 None:intergenic
TGAGTGAGAACGGCGGTGGT+GGG 0.539319 6.3:+26333555 None:intergenic
AAGGGGAGAAAGTTGAAGAG+AGG 0.540706 6.3:-26333324 MS.gene000218:CDS
AGTTCAGCAAGTTTCTCAGC+CGG 0.541555 6.3:+26333214 None:intergenic
TGGACTCTGATGAGTCCATC+GGG 0.544487 6.3:-26333426 MS.gene000218:CDS
TGGTGGGTCCCACGTGATGG+TGG 0.546686 6.3:+26333571 None:intergenic
TGGAGATATCGAAGTCGGAC+GGG 0.546734 6.3:+26333482 None:intergenic
AAGCTTTGCTTGTTGCTCGA+AGG 0.549248 6.3:+26329073 None:intergenic
AGGTATAGTAGTTCGATGGA+TGG 0.550518 6.3:-26333286 MS.gene000218:CDS
CGTTCTGATCAACCCTTCAA+CGG 0.556715 6.3:-26328358 MS.gene000218:CDS
GTCCATCGGGACAGCGTCAG+GGG 0.557593 6.3:+26333444 None:intergenic
ATCGGGAAGTCAGCGTCTGA+GGG 0.559162 6.3:-26333409 MS.gene000218:CDS
TCTAAGTCAATTATAACTGG+TGG 0.559887 6.3:+26333601 None:intergenic
AGTCCATCGGGACAGCGTCA+GGG 0.559909 6.3:+26333443 None:intergenic
GGAAGTCAGCGTCTGAGGGA+CGG 0.567008 6.3:-26333405 MS.gene000218:CDS
GAGCGACCACGACCGTTGAA+GGG 0.569915 6.3:+26328346 None:intergenic
GGTATAGTAGTTCGATGGAT+GGG 0.582990 6.3:-26333285 MS.gene000218:CDS
CTCAGACGCTGACTTCCCGA+TGG 0.584518 6.3:+26333411 None:intergenic
ATGGACTCTGATGAGTCCAT+CGG 0.585619 6.3:-26333427 MS.gene000218:CDS
GCATCTCAGGAGCTTGTCTG+TGG 0.585738 6.3:-26333383 MS.gene000218:CDS
ATGGACTCATCAGAGTCCAT+CGG 0.588783 6.3:+26333430 None:intergenic
CTGCTGCACGATCGAAAGAG+AGG 0.598234 6.3:-26331597 MS.gene000218:CDS
GATATACAAGTGAGCTGGAG+AGG 0.598508 6.3:-26331567 MS.gene000218:CDS
AGGTGGTGTCTGAGTGAGAA+CGG 0.599071 6.3:+26333545 None:intergenic
ACATAGGTATAGTAGTTCGA+TGG 0.599361 6.3:-26333290 MS.gene000218:CDS
CGATGGATGGGTCTGAGATG+GGG 0.601831 6.3:-26333273 MS.gene000218:CDS
CAACAAGCAAAGCTTAGAGA+AGG 0.603588 6.3:-26329065 MS.gene000218:intron
TTGGAGATATCGAAGTCGGA+CGG 0.611978 6.3:+26333481 None:intergenic
CGTCAGGGGACGGAAGAGGG+AGG 0.618743 6.3:+26333458 None:intergenic
AAATGAAGGATTACCGGCAA+CGG 0.623798 6.3:+26328474 None:intergenic
GAAAACATGCCACCATCACG+TGG 0.629605 6.3:-26333580 MS.gene000218:CDS
GAGGTTGGAGATATCGAAGT+CGG 0.632312 6.3:+26333477 None:intergenic
GAAGTTAGCTGCGAAACGGA+AGG 0.637672 6.3:+26333525 None:intergenic
TGGTGTGAAGAAATCTATGC+CGG 0.640871 6.3:-26333233 MS.gene000218:CDS
TGTCTGAGTGAGAACGGCGG+TGG 0.649339 6.3:+26333551 None:intergenic
AAGGGTTGATCAGAACGAGA+AGG 0.660536 6.3:+26328364 None:intergenic
GGTTGATCAGAACGAGAAGG+CGG 0.661757 6.3:+26328367 None:intergenic
ATGCCAGGTTGTGTCTGCTG+GGG 0.664418 6.3:+26328391 None:intergenic
GTTAGCTGCGAAACGGAAGG+TGG 0.670064 6.3:+26333528 None:intergenic
ATTCTGAGCAGTCAAATCAG+TGG 0.697438 6.3:+26329121 None:intergenic
GGACTGTAAGTTGTGCAGAG+AGG 0.716589 6.3:+26331512 None:intergenic
AAAACATGCCACCATCACGT+GGG 0.739972 6.3:-26333579 MS.gene000218:CDS
TGGTGTCTGAGTGAGAACGG+CGG 0.821224 6.3:+26333548 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTATGTACTAAATTTA+AGG - chr6.3:26328861-26328880 MS.gene000218:intron 10.0%
!! ATATAAGTTTAATGAATATG+TGG - chr6.3:26328940-26328959 MS.gene000218:intron 15.0%
!! GAAAAAAAAAATAGATGAAA+TGG - chr6.3:26330247-26330266 MS.gene000218:intron 15.0%
!! GTAAACGTATATATAATTTA+CGG + chr6.3:26329559-26329578 None:intergenic 15.0%
!! TATATGATAGAATATTATAG+CGG - chr6.3:26328968-26328987 MS.gene000218:intron 15.0%
!!! ACAAAATTTAGTTATTTTCT+TGG - chr6.3:26332253-26332272 MS.gene000218:intron 15.0%
!!! TTATTTTGTAATGGATAATT+TGG - chr6.3:26329881-26329900 MS.gene000218:intron 15.0%
!! AAAAAACATCTTAAAACAAC+GGG + chr6.3:26329935-26329954 None:intergenic 20.0%
!! AAAGACTTAAAAGATTTGTA+TGG + chr6.3:26331141-26331160 None:intergenic 20.0%
!! AAATGTGCAAAAGAATAAAA+AGG - chr6.3:26332765-26332784 MS.gene000218:intron 20.0%
!! AAATTGTATGTGTTTATGAT+CGG - chr6.3:26329191-26329210 MS.gene000218:intron 20.0%
!! AAGATACTGTGATTAATTTA+TGG + chr6.3:26331868-26331887 None:intergenic 20.0%
!! ATACATACAAATGTATAGTT+TGG - chr6.3:26330709-26330728 MS.gene000218:intron 20.0%
!! ATTCAATAAAGATGTGATAA+AGG + chr6.3:26332958-26332977 None:intergenic 20.0%
!! CAGTTAAAATTTGATCAAAA+CGG + chr6.3:26331191-26331210 None:intergenic 20.0%
!! GAAAAAACATCTTAAAACAA+CGG + chr6.3:26329936-26329955 None:intergenic 20.0%
!! TATTAAGTGTTCTATGAAAT+GGG - chr6.3:26331164-26331183 MS.gene000218:intron 20.0%
!! TTACCATTTAAATATGAACA+TGG - chr6.3:26333367-26333386 MS.gene000218:CDS 20.0%
!! TTATCACATCTTTATTGAAT+TGG - chr6.3:26332958-26332977 MS.gene000218:intron 20.0%
!! TTCAATAAAGATGTGATAAA+GGG + chr6.3:26332957-26332976 None:intergenic 20.0%
!!! ATGTGTCTTTTATTTTGTAA+TGG - chr6.3:26329872-26329891 MS.gene000218:intron 20.0%
!!! ATTTTGACCTATATTTCAAA+TGG - chr6.3:26330025-26330044 MS.gene000218:intron 20.0%
!!! TGTGTGTTTTATTTTGTAAT+TGG - chr6.3:26330147-26330166 MS.gene000218:intron 20.0%
!!! TTGTAGCATAGTTTTAAAAA+AGG + chr6.3:26333065-26333084 None:intergenic 20.0%
!!! TTTTCTAAGTCAATTATAAC+TGG + chr6.3:26328351-26328370 None:intergenic 20.0%
! AAAAATATCTGTCTTAAGGA+TGG + chr6.3:26332520-26332539 None:intergenic 25.0%
! AAAATAGATGAAATGGTCTT+TGG - chr6.3:26330254-26330273 MS.gene000218:intron 25.0%
! ACTCAAAAATATCTGTCTTA+AGG + chr6.3:26332524-26332543 None:intergenic 25.0%
! AGTTGGTTGTTACATAAATT+TGG + chr6.3:26331792-26331811 None:intergenic 25.0%
! ATAGCTAAATCGTGTAAAAT+AGG + chr6.3:26331502-26331521 None:intergenic 25.0%
! ATCAAATTCACAAACACAAT+TGG + chr6.3:26329825-26329844 None:intergenic 25.0%
! ATCTACATCATTGTTAAAGA+TGG + chr6.3:26330567-26330586 None:intergenic 25.0%
! ATGCAATCATAATCAAAATG+AGG + chr6.3:26331269-26331288 None:intergenic 25.0%
! ATTAAGTGTTCTATGAAATG+GGG - chr6.3:26331165-26331184 MS.gene000218:intron 25.0%
! ATTAATCACAGTATCTTGTT+AGG - chr6.3:26331871-26331890 MS.gene000218:intron 25.0%
! ATTCCATAGAAGTAACTAAA+TGG + chr6.3:26332344-26332363 None:intergenic 25.0%
! ATTCCATTTAGTTACTTCTA+TGG - chr6.3:26332338-26332357 MS.gene000218:intron 25.0%
! CAGAAAAATCTTATACCATA+TGG + chr6.3:26331661-26331680 None:intergenic 25.0%
! CATCTAAAAATCACATGAAA+AGG + chr6.3:26332625-26332644 None:intergenic 25.0%
! CTATTAAGTGTTCTATGAAA+TGG - chr6.3:26331163-26331182 MS.gene000218:intron 25.0%
! GAAATGATATGGTAAAGTTT+AGG - chr6.3:26332202-26332221 MS.gene000218:intron 25.0%
! GAGAAATAAGTGAAATGATA+TGG - chr6.3:26332191-26332210 MS.gene000218:intron 25.0%
! GTTAAGAAACATTGAGTATT+GGG - chr6.3:26329081-26329100 MS.gene000218:CDS 25.0%
! TAAAACTATGCTACAAAAGT+TGG - chr6.3:26333069-26333088 MS.gene000218:intron 25.0%
! TAAATCGTGTAAAATAGGAT+TGG + chr6.3:26331497-26331516 None:intergenic 25.0%
! TAGCCATGTTCATATTTAAA+TGG + chr6.3:26333373-26333392 None:intergenic 25.0%
! TATTTCAAATGGTTAATCCT+AGG - chr6.3:26330036-26330055 MS.gene000218:intron 25.0%
! TCAATAAAGATGTGATAAAG+GGG + chr6.3:26332956-26332975 None:intergenic 25.0%
! TCTCAGTAGTAAATACTTAA+GGG + chr6.3:26332171-26332190 None:intergenic 25.0%
! TTAATAAACCATCGTAAGTA+GGG + chr6.3:26329706-26329725 None:intergenic 25.0%
! TTCAAGCAATGATATTTCTT+TGG + chr6.3:26333305-26333324 None:intergenic 25.0%
! TTCAGTGTAATCATATGTAT+TGG + chr6.3:26330852-26330871 None:intergenic 25.0%
! TTTAATAAACCATCGTAAGT+AGG + chr6.3:26329707-26329726 None:intergenic 25.0%
! TTTCTTGATCCATAAAAAAG+TGG - chr6.3:26332920-26332939 MS.gene000218:intron 25.0%
!! AAATATTGTTTGTGTTTTGC+AGG - chr6.3:26330307-26330326 MS.gene000218:intron 25.0%
!! ACTTTGAAAACATAGAAAGT+AGG + chr6.3:26331353-26331372 None:intergenic 25.0%
!! ATAAAAAGTGATTTTGCTTG+TGG + chr6.3:26328805-26328824 None:intergenic 25.0%
!! ATATTCCTCTTTTATCAAAG+GGG - chr6.3:26331043-26331062 MS.gene000218:intron 25.0%
!! ATCATAGATATTTGATGACT+TGG + chr6.3:26332668-26332687 None:intergenic 25.0%
!! ATCGGATATTTTCAAAACTA+AGG + chr6.3:26333145-26333164 None:intergenic 25.0%
!! CATATTCCTCTTTTATCAAA+GGG - chr6.3:26331042-26331061 MS.gene000218:intron 25.0%
!! CATTTTATATGCCAATTTTG+TGG - chr6.3:26331993-26332012 MS.gene000218:intron 25.0%
!! CTTCTCTTAAAAGTTTTTCT+AGG + chr6.3:26329308-26329327 None:intergenic 25.0%
!! CTTTGAAAACATAGAAAGTA+GGG + chr6.3:26331352-26331371 None:intergenic 25.0%
!! GGATTAACCATTTGAAATAT+AGG + chr6.3:26330035-26330054 None:intergenic 25.0%
!! TATTGAATTGGACTAGAAAA+AGG - chr6.3:26332970-26332989 MS.gene000218:intron 25.0%
!! TCATATTCCTCTTTTATCAA+AGG - chr6.3:26331041-26331060 MS.gene000218:intron 25.0%
!! TCGGATATTTTCAAAACTAA+GGG + chr6.3:26333144-26333163 None:intergenic 25.0%
!! TTTTGCATCATTTACGATTT+TGG - chr6.3:26333117-26333136 MS.gene000218:intron 25.0%
!!! AAGCAAAATCCACTTTTTTA+TGG + chr6.3:26332932-26332951 None:intergenic 25.0%
!!! ACAGATATTTTTGAGTAAAG+TGG - chr6.3:26332528-26332547 MS.gene000218:intron 25.0%
!!! ATCTTTTAGTTAGGAAAACA+TGG + chr6.3:26331568-26331587 None:intergenic 25.0%
!!! CTTTTCATGTGATTTTTAGA+TGG - chr6.3:26332623-26332642 MS.gene000218:intron 25.0%
!!! GTTGCTTTTGTGATATAAAT+CGG - chr6.3:26333250-26333269 MS.gene000218:CDS 25.0%
!!! TGGTTTTATTTTCGAAAACT+AGG + chr6.3:26331772-26331791 None:intergenic 25.0%
!!! TGTAGTTGATTCTAAGATTA+GGG - chr6.3:26329995-26330014 MS.gene000218:intron 25.0%
AAAGGAAATAACATACCTGA+AGG + chr6.3:26330458-26330477 None:intergenic 30.0%
AATCTTATACCATATGGTGA+AGG + chr6.3:26331655-26331674 None:intergenic 30.0%
ACATCATTGTTAAAGATGGA+GGG + chr6.3:26330563-26330582 None:intergenic 30.0%
ACCAGAAATTCCATATGTAT+AGG + chr6.3:26329790-26329809 None:intergenic 30.0%
AGAGAGAAGATTATGTAGTT+AGG - chr6.3:26329234-26329253 MS.gene000218:intron 30.0%
ATCCCTAAATACGTTAGATA+GGG + chr6.3:26333172-26333191 None:intergenic 30.0%
ATGAAATGGTCTTTGGATTA+TGG - chr6.3:26330261-26330280 MS.gene000218:intron 30.0%
CAATAAAGATGTGATAAAGG+GGG + chr6.3:26332955-26332974 None:intergenic 30.0%
CAATCATGCTTACGAAAAAT+TGG - chr6.3:26331523-26331542 MS.gene000218:CDS 30.0%
CCTACTTCAACGATATAAAA+TGG + chr6.3:26331687-26331706 None:intergenic 30.0%
CCTTAAAACGAGAACTAAAA+AGG - chr6.3:26332288-26332307 MS.gene000218:intron 30.0%
CGATTCTAAGTTTAGAAGTT+TGG - chr6.3:26329749-26329768 MS.gene000218:intron 30.0%
CTAAATCATGAAACAGAAGA+TGG + chr6.3:26331295-26331314 None:intergenic 30.0%
CTCTCAGTAGTAAATACTTA+AGG + chr6.3:26332172-26332191 None:intergenic 30.0%
CTTCTATATATGTTGATCCT+AGG + chr6.3:26330056-26330075 None:intergenic 30.0%
GAAAAGTTCAGATGATATGT+AGG + chr6.3:26331012-26331031 None:intergenic 30.0%
GGAAGTTAATCCTATACATA+TGG - chr6.3:26329777-26329796 MS.gene000218:intron 30.0%
GGTAAAGTTTAGGCTATTAT+AGG - chr6.3:26332212-26332231 MS.gene000218:intron 30.0%
GGTTAAGAAACATTGAGTAT+TGG - chr6.3:26329080-26329099 MS.gene000218:CDS 30.0%
GGTTGTAACGCAAATTATAT+AGG + chr6.3:26330764-26330783 None:intergenic 30.0%
GTTACTTCTATGGAATACAT+TGG - chr6.3:26332348-26332367 MS.gene000218:intron 30.0%
TACATCATTGTTAAAGATGG+AGG + chr6.3:26330564-26330583 None:intergenic 30.0%
TACGTTAGATAGGGAAAAAT+CGG + chr6.3:26333163-26333182 None:intergenic 30.0%
TCACTAGTCAGAAAACTAAA+AGG + chr6.3:26332385-26332404 None:intergenic 30.0%
TCCTATACATATGGAATTTC+TGG - chr6.3:26329786-26329805 MS.gene000218:intron 30.0%
TCTAAGTCAATTATAACTGG+TGG + chr6.3:26328348-26328367 None:intergenic 30.0%
TCTACTAAAGTGACGATAAA+AGG + chr6.3:26332077-26332096 None:intergenic 30.0%
TGTCAAATTACTACAAGTAG+AGG - chr6.3:26329278-26329297 MS.gene000218:intron 30.0%
TGTTTGTAACATGTTCTTGT+TGG - chr6.3:26330525-26330544 MS.gene000218:intron 30.0%
TTAACCATGACTCACAAATT+AGG + chr6.3:26329581-26329600 None:intergenic 30.0%
TTCAGAACAGTGAAATGAAA+AGG + chr6.3:26330476-26330495 None:intergenic 30.0%
TTCCCTATCTAACGTATTTA+GGG - chr6.3:26333167-26333186 MS.gene000218:intron 30.0%
TTTATATCGTTGAAGTAGGT+TGG - chr6.3:26331688-26331707 MS.gene000218:intron 30.0%
TTTCCCTATCTAACGTATTT+AGG - chr6.3:26333166-26333185 MS.gene000218:intron 30.0%
! AAGTTTAGAAGTTTGGAATC+TGG - chr6.3:26329756-26329775 MS.gene000218:intron 30.0%
! ACCATCTACGTAAAATTTTG+TGG + chr6.3:26331430-26331449 None:intergenic 30.0%
! CCATTTTATATCGTTGAAGT+AGG - chr6.3:26331684-26331703 MS.gene000218:intron 30.0%
! GTAATCATATGTATTGGTGT+CGG + chr6.3:26330846-26330865 None:intergenic 30.0%
! GTACAAATGCAAGATTTTAC+TGG - chr6.3:26331922-26331941 MS.gene000218:intron 30.0%
! TCCACAAAATTTTACGTAGA+TGG - chr6.3:26331426-26331445 MS.gene000218:intron 30.0%
! TTTACCTAATTTGTGAGTCA+TGG - chr6.3:26329574-26329593 MS.gene000218:intron 30.0%
! TTTTTGGATCCTTAATCTTG+TGG - chr6.3:26331715-26331734 MS.gene000218:intron 30.0%
!! AATAGGATTGGTTGAACTTT+AGG + chr6.3:26331485-26331504 None:intergenic 30.0%
!! AGTTGGCTTAAATACAGTTT+TGG - chr6.3:26333086-26333105 MS.gene000218:intron 30.0%
!! CATGTGATTTTTAGATGGAT+AGG - chr6.3:26332628-26332647 MS.gene000218:intron 30.0%
!! CTGTAGTTGATTCTAAGATT+AGG - chr6.3:26329994-26330013 MS.gene000218:intron 30.0%
!! GTAGTTGATTCTAAGATTAG+GGG - chr6.3:26329996-26330015 MS.gene000218:intron 30.0%
!!! ATAAACCTTTTAGCTCTCTT+AGG + chr6.3:26328771-26328790 None:intergenic 30.0%
!!! CCTTTTTAGTTCTCGTTTTA+AGG + chr6.3:26332291-26332310 None:intergenic 30.0%
!!! GAAGTAGGTTGGTTTATTTT+TGG - chr6.3:26331699-26331718 MS.gene000218:intron 30.0%
!!! GCAAAAGTGTTTTGCAAAAA+TGG + chr6.3:26333334-26333353 None:intergenic 30.0%
!!! TGGATTCAGAGTTTTTTGAT+GGG - chr6.3:26328583-26328602 MS.gene000218:intron 30.0%
AAACACCCCTTTGATAAAAG+AGG + chr6.3:26331051-26331070 None:intergenic 35.0%
AAAGGATTGCCACAAGATTA+AGG + chr6.3:26331727-26331746 None:intergenic 35.0%
AAAGTGTGACATTGTCTAAG+TGG + chr6.3:26333223-26333242 None:intergenic 35.0%
AAGTCAATTATAACTGGTGG+TGG + chr6.3:26328345-26328364 None:intergenic 35.0%
ACATAGGTATAGTAGTTCGA+TGG - chr6.3:26328656-26328675 MS.gene000218:intron 35.0%
AGTCTCGTACTAAAGTTTCT+TGG - chr6.3:26329649-26329668 MS.gene000218:intron 35.0%
AGTCTCTAACTGAAGTTTGT+CGG - chr6.3:26329512-26329531 MS.gene000218:intron 35.0%
AGTTAGGAGAGTAAATCAGA+TGG - chr6.3:26329250-26329269 MS.gene000218:intron 35.0%
ATCAGACACACAAACACAAT+TGG + chr6.3:26330098-26330117 None:intergenic 35.0%
ATCTGTAATCCAACAAACCA+AGG + chr6.3:26332585-26332604 None:intergenic 35.0%
ATTTGTGAGTCATGGTTAAG+CGG - chr6.3:26329582-26329601 MS.gene000218:intron 35.0%
CATACTCTAAGTGTGTTTGA+GGG - chr6.3:26331947-26331966 MS.gene000218:intron 35.0%
CATCCCTAAATACGTTAGAT+AGG + chr6.3:26333173-26333192 None:intergenic 35.0%
CGTAAATGATGCAAAATAGC+AGG + chr6.3:26333113-26333132 None:intergenic 35.0%
CTGTACTCATAACTTTGAAC+TGG - chr6.3:26330978-26330997 MS.gene000218:intron 35.0%
GAGTAAAGTGGTAATTATCC+AGG - chr6.3:26332540-26332559 MS.gene000218:intron 35.0%
GCATATCCTTGGTATTATGT+GGG + chr6.3:26330637-26330656 None:intergenic 35.0%
GGATTATGGAGAATTCAGTT+TGG - chr6.3:26330275-26330294 MS.gene000218:intron 35.0%
GTCTCGTACTAAAGTTTCTT+GGG - chr6.3:26329650-26329669 MS.gene000218:intron 35.0%
TAAAGAAACCATCGCGAATA+GGG + chr6.3:26329168-26329187 None:intergenic 35.0%
TATGTAACAACCAACTGTAG+TGG - chr6.3:26331796-26331815 MS.gene000218:intron 35.0%
TCATCACAACACCACAAAAT+TGG + chr6.3:26332007-26332026 None:intergenic 35.0%
TCTGTAATCCAACAAACCAA+GGG + chr6.3:26332584-26332603 None:intergenic 35.0%
TGACTAGTGACTATGTTAGA+GGG - chr6.3:26332395-26332414 MS.gene000218:intron 35.0%
TGAGATAGTAGGATAAGACT+TGG - chr6.3:26329013-26329032 MS.gene000218:intron 35.0%
TGATTTGACTGCTCAGAATA+AGG - chr6.3:26332829-26332848 MS.gene000218:intron 35.0%
TGCATATCCTTGGTATTATG+TGG + chr6.3:26330638-26330657 None:intergenic 35.0%
TGGAAATACAAGCACGAAAT+CGG + chr6.3:26331410-26331429 None:intergenic 35.0%
TGTTAGGATTTATGTTCGTC+TGG - chr6.3:26331887-26331906 MS.gene000218:intron 35.0%
TTAAAGAAACCATCGCGAAT+AGG + chr6.3:26329169-26329188 None:intergenic 35.0%
TTAAGCAGTCTCAGGTTTAA+TGG + chr6.3:26331228-26331247 None:intergenic 35.0%
TTCTTTGAGTGTACTATCTC+TGG - chr6.3:26332042-26332061 MS.gene000218:intron 35.0%
TTGATCCTAAGAGAGCTAAA+AGG - chr6.3:26328763-26328782 MS.gene000218:intron 35.0%
TTGTAACATGTTCTTGTTGG+TGG - chr6.3:26330528-26330547 MS.gene000218:intron 35.0%
! AAAAACCCTCCTTTTTATCC+TGG + chr6.3:26331459-26331478 None:intergenic 35.0%
! AATTTTACGTAGATGGTCCT+AGG - chr6.3:26331433-26331452 MS.gene000218:intron 35.0%
! AGATATTTGATGACTTGGAG+TGG + chr6.3:26332663-26332682 None:intergenic 35.0%
! ATGTGTTTATGATCGGCTTA+GGG - chr6.3:26329198-26329217 MS.gene000218:intron 35.0%
! GGTTTTCTTGTGAAGTTGTT+TGG + chr6.3:26328324-26328343 None:intergenic 35.0%
! GTGACTTAATTTGACTCAGT+TGG - chr6.3:26329059-26329078 MS.gene000218:intron 35.0%
! TATGTGTTTATGATCGGCTT+AGG - chr6.3:26329197-26329216 MS.gene000218:intron 35.0%
!! AAGAAACATTGAGTATTGGG+TGG - chr6.3:26329084-26329103 MS.gene000218:CDS 35.0%
!! AGAAACATTGAGTATTGGGT+GGG - chr6.3:26329085-26329104 MS.gene000218:CDS 35.0%
!! ATGTTCTTGTTGGTGGTTTA+TGG - chr6.3:26330535-26330554 MS.gene000218:intron 35.0%
!! GTGATTTTTAGATGGATAGG+TGG - chr6.3:26332631-26332650 MS.gene000218:intron 35.0%
!!! CAGAGTTTTTTGATGGGTTA+GGG - chr6.3:26328589-26328608 MS.gene000218:intron 35.0%
!!! GTGGATTCAGAGTTTTTTGA+TGG - chr6.3:26328582-26328601 MS.gene000218:intron 35.0%
!!! TCAGAGTTTTTTGATGGGTT+AGG - chr6.3:26328588-26328607 MS.gene000218:intron 35.0%
!!! TTTTTTGATGGGTTAGGGTT+TGG - chr6.3:26328594-26328613 MS.gene000218:intron 35.0%
AAATGAAGGATTACCGGCAA+CGG + chr6.3:26333475-26333494 None:intergenic 40.0%
AACTCGATATACAAGTGAGC+TGG - chr6.3:26330374-26330393 MS.gene000218:intron 40.0%
AACTGTAATCCCACTAAGTG+GGG + chr6.3:26329392-26329411 None:intergenic 40.0%
AAGTGTGTTTGAGGGAATCT+TGG - chr6.3:26331955-26331974 MS.gene000218:intron 40.0%
AAGTTTGTCGGGATATTCTG+AGG - chr6.3:26329524-26329543 MS.gene000218:intron 40.0%
ACATGCAACATGCATATCCT+TGG + chr6.3:26330648-26330667 None:intergenic 40.0%
AGAAAGAACTTCAACGCCTT+AGG - chr6.3:26333427-26333446 MS.gene000218:CDS 40.0%
AGGAGAGTAAATCAGATGGA+GGG - chr6.3:26329254-26329273 MS.gene000218:intron 40.0%
AGGATTACTCATCTGTTGCA+TGG + chr6.3:26333532-26333551 None:intergenic 40.0%
AGGGCTTTCTTCCATAATAC+TGG - chr6.3:26332414-26332433 MS.gene000218:intron 40.0%
AGGTATAGTAGTTCGATGGA+TGG - chr6.3:26328660-26328679 MS.gene000218:intron 40.0%
AGTACAGTGTCCAAATGCAA+GGG + chr6.3:26330965-26330984 None:intergenic 40.0%
ATGGAACCCACATAATACCA+AGG - chr6.3:26330628-26330647 MS.gene000218:intron 40.0%
ATGTAGTTTACCCCACTTAG+TGG - chr6.3:26329379-26329398 MS.gene000218:intron 40.0%
ATTCTGAGCAGTCAAATCAG+TGG + chr6.3:26332828-26332847 None:intergenic 40.0%
CAACAAGCAAAGCTTAGAGA+AGG - chr6.3:26332881-26332900 MS.gene000218:intron 40.0%
CAACTGTAATCCCACTAAGT+GGG + chr6.3:26329393-26329412 None:intergenic 40.0%
CCCGTTAAATGAAGGATTAC+CGG + chr6.3:26333481-26333500 None:intergenic 40.0%
CCGGTAATCCTTCATTTAAC+GGG - chr6.3:26333478-26333497 MS.gene000218:CDS 40.0%
CTGACTAGTGACTATGTTAG+AGG - chr6.3:26332394-26332413 MS.gene000218:intron 40.0%
CTGTAATCCAACAAACCAAG+GGG + chr6.3:26332583-26332602 None:intergenic 40.0%
GAAAGAACTTCAACGCCTTA+GGG - chr6.3:26333428-26333447 MS.gene000218:CDS 40.0%
GAGAACATCCCGTTAAATGA+AGG + chr6.3:26333489-26333508 None:intergenic 40.0%
GCATACTCTAAGTGTGTTTG+AGG - chr6.3:26331946-26331965 MS.gene000218:intron 40.0%
GCCGGTAATCCTTCATTTAA+CGG - chr6.3:26333477-26333496 MS.gene000218:CDS 40.0%
GGGCTTTCTTCCATAATACT+GGG - chr6.3:26332415-26332434 MS.gene000218:intron 40.0%
GGTATAGTAGTTCGATGGAT+GGG - chr6.3:26328661-26328680 MS.gene000218:intron 40.0%
GTCAAATACCCTACTTACGA+TGG - chr6.3:26329695-26329714 MS.gene000218:intron 40.0%
GTCTCTAACTGAAGTTTGTC+GGG - chr6.3:26329513-26329532 MS.gene000218:intron 40.0%
GTTTCAGATTAAGCAGTCTC+AGG + chr6.3:26331236-26331255 None:intergenic 40.0%
TAAATCGAGCCTTCACCATA+TGG - chr6.3:26331643-26331662 MS.gene000218:intron 40.0%
TAGGAGAGTAAATCAGATGG+AGG - chr6.3:26329253-26329272 MS.gene000218:intron 40.0%
TAGGGCGCAAAAGAATCATT+TGG - chr6.3:26333446-26333465 MS.gene000218:CDS 40.0%
TATGCATGTTGCATGTGTGT+AGG - chr6.3:26330652-26330671 MS.gene000218:intron 40.0%
TCAACTGTAATCCCACTAAG+TGG + chr6.3:26329394-26329413 None:intergenic 40.0%
TCCATAATACTGGGAGAGAT+TGG - chr6.3:26332424-26332443 MS.gene000218:intron 40.0%
TGGTGTGAAGAAATCTATGC+CGG - chr6.3:26328713-26328732 MS.gene000218:intron 40.0%
TGTAGTTTACCCCACTTAGT+GGG - chr6.3:26329380-26329399 MS.gene000218:intron 40.0%
TGTGCGGTCATAACTGTTTA+TGG - chr6.3:26330609-26330628 MS.gene000218:intron 40.0%
! AATGATTCTTTTGCGCCCTA+AGG + chr6.3:26333446-26333465 None:intergenic 40.0%
! ATTTGATGACTTGGAGTGGT+TGG + chr6.3:26332659-26332678 None:intergenic 40.0%
! TTAAGCGGTGTTGAGTTTGT+GGG - chr6.3:26329597-26329616 MS.gene000218:intron 40.0%
! TTTGATGACTTGGAGTGGTT+GGG + chr6.3:26332658-26332677 None:intergenic 40.0%
!! AAACATTGAGTATTGGGTGG+GGG - chr6.3:26329087-26329106 MS.gene000218:CDS 40.0%
!! CTGCAGCACATCTTTTAGTT+AGG + chr6.3:26331577-26331596 None:intergenic 40.0%
!! GAAACATTGAGTATTGGGTG+GGG - chr6.3:26329086-26329105 MS.gene000218:CDS 40.0%
!!! CTGTCTGATTTTGAGTTGTG+CGG - chr6.3:26330593-26330612 MS.gene000218:intron 40.0%
AAAACATGCCACCATCACGT+GGG - chr6.3:26328367-26328386 MS.gene000218:CDS 45.0%
AACCTATGAAGCACAGACAC+AGG + chr6.3:26330931-26330950 None:intergenic 45.0%
AACGACACATGTTCGACAAC+AGG + chr6.3:26330821-26330840 None:intergenic 45.0%
AAGGGGAGAAAGTTGAAGAG+AGG - chr6.3:26328622-26328641 MS.gene000218:intron 45.0%
ACTATCTCACGTCAGCTACA+CGG + chr6.3:26329002-26329021 None:intergenic 45.0%
AGAGGAAGGTGAGTAGACAT+AGG - chr6.3:26328640-26328659 MS.gene000218:intron 45.0%
AGTTCAGCAAGTTTCTCAGC+CGG + chr6.3:26328735-26328754 None:intergenic 45.0%
ATGGACTCATCAGAGTCCAT+CGG + chr6.3:26328519-26328538 None:intergenic 45.0%
ATGGACTCTGATGAGTCCAT+CGG - chr6.3:26328519-26328538 MS.gene000218:CDS 45.0%
CATGTGTGTAGGTACTAGGT+AGG - chr6.3:26330663-26330682 MS.gene000218:intron 45.0%
CGTTCTGATCAACCCTTCAA+CGG - chr6.3:26333588-26333607 MS.gene000218:CDS 45.0%
CTAGGCCAGGATAAAAAGGA+GGG - chr6.3:26331451-26331470 MS.gene000218:intron 45.0%
GAGGTTGGAGATATCGAAGT+CGG + chr6.3:26328472-26328491 None:intergenic 45.0%
GAGTACAGTGTCCAAATGCA+AGG + chr6.3:26330966-26330985 None:intergenic 45.0%
GATATACAAGTGAGCTGGAG+AGG - chr6.3:26330379-26330398 MS.gene000218:intron 45.0%
GCCAATCTCTCCCAGTATTA+TGG + chr6.3:26332428-26332447 None:intergenic 45.0%
GCGTTACAACCTATGAAGCA+CGG - chr6.3:26330773-26330792 MS.gene000218:intron 45.0%
GGAGAAAGTTGAAGAGAGGA+AGG - chr6.3:26328626-26328645 MS.gene000218:intron 45.0%
GGATACTATGACGAGCATCT+GGG - chr6.3:26329671-26329690 MS.gene000218:intron 45.0%
GTGTACTATCTCTGGTGATC+TGG - chr6.3:26332050-26332069 MS.gene000218:intron 45.0%
GTTAAGCGACACTCAGTTTG+TGG - chr6.3:26329452-26329471 MS.gene000218:intron 45.0%
GTTGCATGTGTGTAGGTACT+AGG - chr6.3:26330659-26330678 MS.gene000218:intron 45.0%
TCTTGTGGCAATCCTTTCCA+AGG - chr6.3:26331730-26331749 MS.gene000218:intron 45.0%
TGAAATTAACAGCGTGCGAG+AGG + chr6.3:26332728-26332747 None:intergenic 45.0%
TGCACAACTTACAGTCCTTC+AGG - chr6.3:26330440-26330459 MS.gene000218:intron 45.0%
TGTAGCCAATCTCTGTGACT+CGG - chr6.3:26329426-26329445 MS.gene000218:intron 45.0%
TGTAGCTGACGTGAGATAGT+AGG - chr6.3:26329002-26329021 MS.gene000218:intron 45.0%
TTGGAGATATCGAAGTCGGA+CGG + chr6.3:26328468-26328487 None:intergenic 45.0%
! AAGCTTTGCTTGTTGCTCGA+AGG + chr6.3:26332876-26332895 None:intergenic 45.0%
! AAGGGTTGATCAGAACGAGA+AGG + chr6.3:26333585-26333604 None:intergenic 45.0%
! ATGATCGGCTTAGGGAGTTT+GGG - chr6.3:26329206-26329225 MS.gene000218:intron 45.0%
! CATGTTTCTGCACCTTGGAA+AGG + chr6.3:26331745-26331764 None:intergenic 45.0%
! GGTGTTGTGATGAGTGAAGA+TGG - chr6.3:26332014-26332033 MS.gene000218:intron 45.0%
! GTTAAGCGGTGTTGAGTTTG+TGG - chr6.3:26329596-26329615 MS.gene000218:intron 45.0%
! TATGATCGGCTTAGGGAGTT+TGG - chr6.3:26329205-26329224 MS.gene000218:intron 45.0%
!! AACATTGAGTATTGGGTGGG+GGG - chr6.3:26329088-26329107 MS.gene000218:CDS 45.0%
!! TTTGATGGGTTAGGGTTTGG+TGG - chr6.3:26328597-26328616 MS.gene000218:intron 45.0%
AACAAACCAAGGGGACCATG+TGG + chr6.3:26332574-26332593 None:intergenic 50.0%
AAGCGACACTCAGTTTGTGG+TGG - chr6.3:26329455-26329474 MS.gene000218:intron 50.0%
AATCATTTGGCTGCCGTTGC+CGG - chr6.3:26333459-26333478 MS.gene000218:CDS 50.0%
ACAAACCAAGGGGACCATGT+GGG + chr6.3:26332573-26332592 None:intergenic 50.0%
ACCAACCGAGTCACAGAGAT+TGG + chr6.3:26329434-26329453 None:intergenic 50.0%
ACCATCGCGAATAGGGTCTT+TGG + chr6.3:26329161-26329180 None:intergenic 50.0%
AGCGACACTCAGTTTGTGGT+GGG - chr6.3:26329456-26329475 MS.gene000218:intron 50.0%
AGGTGGTGTCTGAGTGAGAA+CGG + chr6.3:26328404-26328423 None:intergenic 50.0%
ATCCAGGCATTCAACCCACA+TGG - chr6.3:26332556-26332575 MS.gene000218:intron 50.0%
CCTAGGCCAGGATAAAAAGG+AGG - chr6.3:26331450-26331469 MS.gene000218:intron 50.0%
CGTCGAAGTTAGCTGCGAAA+CGG + chr6.3:26328428-26328447 None:intergenic 50.0%
CTACACGCTTCCCTTGCATT+TGG - chr6.3:26330952-26330971 MS.gene000218:intron 50.0%
GAAAACATGCCACCATCACG+TGG - chr6.3:26328366-26328385 MS.gene000218:CDS 50.0%
GAAGTTAGCTGCGAAACGGA+AGG + chr6.3:26328424-26328443 None:intergenic 50.0%
GGACTGTAAGTTGTGCAGAG+AGG + chr6.3:26330437-26330456 None:intergenic 50.0%
GGGATACTATGACGAGCATC+TGG - chr6.3:26329670-26329689 MS.gene000218:intron 50.0%
GGTCCTAGGCCAGGATAAAA+AGG - chr6.3:26331447-26331466 MS.gene000218:intron 50.0%
GGTTGATCAGAACGAGAAGG+CGG + chr6.3:26333582-26333601 None:intergenic 50.0%
GTCCTGTGTCTGTGCTTCAT+AGG - chr6.3:26330926-26330945 MS.gene000218:intron 50.0%
TCGTGGTCGCTCTAACTTCA+TGG - chr6.3:26333611-26333630 MS.gene000218:CDS 50.0%
TGGACTCATCAGAGTCCATC+GGG + chr6.3:26328518-26328537 None:intergenic 50.0%
TGGACTCTGATGAGTCCATC+GGG - chr6.3:26328520-26328539 MS.gene000218:CDS 50.0%
TGGAGATATCGAAGTCGGAC+GGG + chr6.3:26328467-26328486 None:intergenic 50.0%
TTCGATGGATGGGTCTGAGA+TGG - chr6.3:26328671-26328690 MS.gene000218:intron 50.0%
TTGAGTTTGTGGGAGGACTG+AGG - chr6.3:26329607-26329626 MS.gene000218:intron 50.0%
! CCTCCTTTTTATCCTGGCCT+AGG + chr6.3:26331453-26331472 None:intergenic 50.0%
! GAGATGGGGTTGTTTGAGGT+TGG - chr6.3:26328687-26328706 MS.gene000218:intron 50.0%
! GCACTCATGTTTCTGCACCT+TGG + chr6.3:26331750-26331769 None:intergenic 50.0%
! GTCTGAGATGGGGTTGTTTG+AGG - chr6.3:26328683-26328702 MS.gene000218:intron 50.0%
! TCGATGGATGGGTCTGAGAT+GGG - chr6.3:26328672-26328691 MS.gene000218:intron 50.0%
!! ACATGGTCCCCTTGGTTTGT+TGG - chr6.3:26332573-26332592 MS.gene000218:intron 50.0%
!! GGGTTGTTTGAGGTTGGTGA+TGG - chr6.3:26328693-26328712 MS.gene000218:intron 50.0%
!! GGTTAGGGTTTGGTGGTGAA+GGG - chr6.3:26328604-26328623 MS.gene000218:intron 50.0%
!! GTTAGGGTTTGGTGGTGAAG+GGG - chr6.3:26328605-26328624 MS.gene000218:intron 50.0%
AACAGGACACGCCTAACCTG+AGG + chr6.3:26330804-26330823 None:intergenic 55.0%
ATCGGGAAGTCAGCGTCTGA+GGG - chr6.3:26328537-26328556 MS.gene000218:CDS 55.0%
ATGAAGCACGGACACTCCTC+AGG - chr6.3:26330785-26330804 MS.gene000218:intron 55.0%
ATGCCAGGTTGTGTCTGCTG+GGG + chr6.3:26333558-26333577 None:intergenic 55.0%
CATGCCAGGTTGTGTCTGCT+GGG + chr6.3:26333559-26333578 None:intergenic 55.0%
CCAGTAGCGTCCACTACAGT+TGG + chr6.3:26331809-26331828 None:intergenic 55.0%
CGACACTCAGTTTGTGGTGG+GGG - chr6.3:26329458-26329477 MS.gene000218:intron 55.0%
CTGCTGCACGATCGAAAGAG+AGG - chr6.3:26330349-26330368 MS.gene000218:intron 55.0%
GATCAACCCTTCAACGGTCG+TGG - chr6.3:26333594-26333613 MS.gene000218:CDS 55.0%
GCATCTCAGGAGCTTGTCTG+TGG - chr6.3:26328563-26328582 MS.gene000218:intron 55.0%
GCCAAAGACCCTATTCGCGA+TGG - chr6.3:26329157-26329176 MS.gene000218:intron 55.0%
GCGACACTCAGTTTGTGGTG+GGG - chr6.3:26329457-26329476 MS.gene000218:intron 55.0%
GTTAGCTGCGAAACGGAAGG+TGG + chr6.3:26328421-26328440 None:intergenic 55.0%
TACGTAGATGGTCCTAGGCC+AGG - chr6.3:26331438-26331457 MS.gene000218:intron 55.0%
TGGTGTCTGAGTGAGAACGG+CGG + chr6.3:26328401-26328420 None:intergenic 55.0%
TTCAACCCACATGGTCCCCT+TGG - chr6.3:26332565-26332584 MS.gene000218:intron 55.0%
! AGCGGTGTTGAGTTTGTGGG+AGG - chr6.3:26329600-26329619 MS.gene000218:intron 55.0%
! CGATGGATGGGTCTGAGATG+GGG - chr6.3:26328673-26328692 MS.gene000218:intron 55.0%
! GACCATGTGGGTTGAATGCC+TGG + chr6.3:26332561-26332580 None:intergenic 55.0%
!! ATTGAGTATTGGGTGGGGGG+AGG - chr6.3:26329091-26329110 MS.gene000218:CDS 55.0%
!! CCAACTGTAGTGGACGCTAC+TGG - chr6.3:26331806-26331825 MS.gene000218:intron 55.0%
!! GAGGAGTGTCCGTGCTTCAT+AGG + chr6.3:26330785-26330804 None:intergenic 55.0%
!! GCCAATCTCTGTGACTCGGT+TGG - chr6.3:26329430-26329449 MS.gene000218:intron 55.0%
!! GGGTTAGGGTTTGGTGGTGA+AGG - chr6.3:26328603-26328622 MS.gene000218:intron 55.0%
!! GGTTTGTTGGGGGTGCTCTA+AGG - chr6.3:26329123-26329142 MS.gene000218:CDS 55.0%
!! TTGAGTATTGGGTGGGGGGA+GGG - chr6.3:26329092-26329111 MS.gene000218:CDS 55.0%
AGAGCGACCACGACCGTTGA+AGG + chr6.3:26333604-26333623 None:intergenic 60.0%
AGTCCATCGGGACAGCGTCA+GGG + chr6.3:26328506-26328525 None:intergenic 60.0%
ATCGAAGTCGGACGGGTCGA+AGG + chr6.3:26328460-26328479 None:intergenic 60.0%
CAACCCCAGCAGACACAACC+TGG - chr6.3:26333552-26333571 MS.gene000218:CDS 60.0%
CATCGGGAAGTCAGCGTCTG+AGG - chr6.3:26328536-26328555 MS.gene000218:CDS 60.0%
GAGCGACCACGACCGTTGAA+GGG + chr6.3:26333603-26333622 None:intergenic 60.0%
GCACGGACACTCCTCAGGTT+AGG - chr6.3:26330790-26330809 MS.gene000218:intron 60.0%
GCATGCCAGGTTGTGTCTGC+TGG + chr6.3:26333560-26333579 None:intergenic 60.0%
GGAAGTCAGCGTCTGAGGGA+CGG - chr6.3:26328541-26328560 MS.gene000218:intron 60.0%
GGTTGTGTCTGCTGGGGTTG+AGG + chr6.3:26333552-26333571 None:intergenic 60.0%
TGAGTGAGAACGGCGGTGGT+GGG + chr6.3:26328394-26328413 None:intergenic 60.0%
TGTCTGAGTGAGAACGGCGG+TGG + chr6.3:26328398-26328417 None:intergenic 60.0%
! CACTCAGTTTGTGGTGGGGG+AGG - chr6.3:26329461-26329480 MS.gene000218:intron 60.0%
! TTTGTGGTGGGGGAGGACTG+AGG - chr6.3:26329468-26329487 MS.gene000218:intron 60.0%
!! AGGGGGCGCTGAGGTTTGTT+GGG - chr6.3:26329111-26329130 MS.gene000218:CDS 60.0%
!! CTCAGACGCTGACTTCCCGA+TGG + chr6.3:26328538-26328557 None:intergenic 60.0%
!! TGAGTATTGGGTGGGGGGAG+GGG - chr6.3:26329093-26329112 MS.gene000218:CDS 60.0%
ACAGCGTCAGGGGACGGAAG+AGG + chr6.3:26328495-26328514 None:intergenic 65.0%
AGGGGACGGAAGAGGGAGGT+TGG + chr6.3:26328487-26328506 None:intergenic 65.0%
ATCGGGACAGCGTCAGGGGA+CGG + chr6.3:26328501-26328520 None:intergenic 65.0%
CAGCGTCAGGGGACGGAAGA+GGG + chr6.3:26328494-26328513 None:intergenic 65.0%
CGTCTGAGGGACGGCATCTC+AGG - chr6.3:26328550-26328569 MS.gene000218:intron 65.0%
CTGAGTGAGAACGGCGGTGG+TGG + chr6.3:26328395-26328414 None:intergenic 65.0%
GAACGAGAAGGCGGCATGCC+AGG + chr6.3:26333573-26333592 None:intergenic 65.0%
GAGTCCATCGGGACAGCGTC+AGG + chr6.3:26328507-26328526 None:intergenic 65.0%
GTCCATCGGGACAGCGTCAG+GGG + chr6.3:26328505-26328524 None:intergenic 65.0%
! TGGTGGGTCCCACGTGATGG+TGG + chr6.3:26328378-26328397 None:intergenic 65.0%
!! GAGGGGGCGCTGAGGTTTGT+TGG - chr6.3:26329110-26329129 MS.gene000218:CDS 65.0%
!! GAGTATTGGGTGGGGGGAGG+GGG - chr6.3:26329094-26329113 MS.gene000218:CDS 65.0%
!! GGGGCGCTGAGGTTTGTTGG+GGG - chr6.3:26329113-26329132 MS.gene000218:CDS 65.0%
!! GGGGGCGCTGAGGTTTGTTG+GGG - chr6.3:26329112-26329131 MS.gene000218:CDS 65.0%
!! GGGGTGCTCTAAGGCGTGTC+TGG - chr6.3:26329132-26329151 MS.gene000218:intron 65.0%
CGTCAGGGGACGGAAGAGGG+AGG + chr6.3:26328491-26328510 None:intergenic 70.0%
GTCCCCTGACGCTGTCCCGA+TGG - chr6.3:26328500-26328519 MS.gene000218:CDS 70.0%
!! CGGTGGTGGGTCCCACGTGA+TGG + chr6.3:26328381-26328400 None:intergenic 70.0%
!!! GGTGGGGGGAGGGGGCGCTG+AGG - chr6.3:26329102-26329121 MS.gene000218:CDS 85.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 26328315 26333653 26328315 ID=MS.gene000218
chr6.3 mRNA 26328315 26333653 26328315 ID=MS.gene000218.t1;Parent=MS.gene000218
chr6.3 exon 26333184 26333653 26333184 ID=MS.gene000218.t1.exon1;Parent=MS.gene000218.t1
chr6.3 CDS 26333184 26333653 26333184 ID=cds.MS.gene000218.t1;Parent=MS.gene000218.t1
chr6.3 exon 26331507 26331639 26331507 ID=MS.gene000218.t1.exon2;Parent=MS.gene000218.t1
chr6.3 CDS 26331507 26331639 26331507 ID=cds.MS.gene000218.t1;Parent=MS.gene000218.t1
chr6.3 exon 26329066 26329150 26329066 ID=MS.gene000218.t1.exon3;Parent=MS.gene000218.t1
chr6.3 CDS 26329066 26329150 26329066 ID=cds.MS.gene000218.t1;Parent=MS.gene000218.t1
chr6.3 exon 26328315 26328559 26328315 ID=MS.gene000218.t1.exon4;Parent=MS.gene000218.t1
chr6.3 CDS 26328315 26328559 26328315 ID=cds.MS.gene000218.t1;Parent=MS.gene000218.t1
Gene Sequence

>MS.gene000218

ATGGAACCAAACAACTTCACAAGAAAACCACCACCAGTTATAATTGACTTAGAAAACATGCCACCATCACGTGGGACCCACCACCGCCGTTCTCACTCAGACACCACCTTCCGTTTCGCAGCTAACTTCGACGATCTTCTCACCTTCGACCCGTCCGACTTCGATATCTCCAACCTCCCTCTTCCGTCCCCTGACGCTGTCCCGATGGACTCTGATGAGTCCATCGGGAAGTCAGCGTCTGAGGGACGGCATCTCAGGAGCTTGTCTGTGGATTCAGAGTTTTTTGATGGGTTAGGGTTTGGTGGTGAAGGGGAGAAAGTTGAAGAGAGGAAGGTGAGTAGACATAGGTATAGTAGTTCGATGGATGGGTCTGAGATGGGGTTGTTTGAGGTTGGTGATGGTGTGAAGAAATCTATGCCGGCTGAGAAACTTGCTGAACTTGCTCTTATTGATCCTAAGAGAGCTAAAAGGTTTATCATCATCATCACCACAAGCAAAATCACTTTTTATAATCACTTTTTAAGTTTGTTTTCGAAGAAATTAATTATATTTATGTACTAAATTTAAGGTTTTTGTTTTTCTTTTTATGAAAAAAAAATTAATATTTAGTTTTTAATTAGAGTCTATATAAGTTTAATGAATATGTGGTATGATATATGATAGAATATTATAGCGGTGTTTGATCCGTGTAGCTGACGTGAGATAGTAGGATAAGACTTGGTTGTTGTTGTTTGTTCAATTTGTGTGACTTAATTTGACTCAGTTGGTTAAGAAACATTGAGTATTGGGTGGGGGGAGGGGGCGCTGAGGTTTGTTGGGGGTGCTCTAAGGCGTGTCTGGTTGCCAAAGACCCTATTCGCGATGGTTTCTTTAAAAAAATTGTATGTGTTTATGATCGGCTTAGGGAGTTTGGGTATGTAGAGAGAAGATTATGTAGTTAGGAGAGTAAATCAGATGGAGGGTTGTCAAATTACTACAAGTAGAGGAAGACCTAGAAAAACTTTTAAGAGAAGTTATTAAGAAAGATTTAGAGATTGATAGAACTTTATGACGTTGTTTGATGCATGTAGTTTACCCCACTTAGTGGGATTACAGTTGATTATTGTTGTTATGTAGCCAATCTCTGTGACTCGGTTGGTTAAGCGACACTCAGTTTGTGGTGGGGGAGGACTGAGGTTTGAACTCAGTAGAGAGATTAGTCTCTAACTGAAGTTTGTCGGGATATTCTGAGGAGCATAATACCGTAAATTATATATACGTTTACCTAATTTGTGAGTCATGGTTAAGCGGTGTTGAGTTTGTGGGAGGACTGAGGTTTGATCTCAGAAGAGATTAGTCTCGTACTAAAGTTTCTTGGGATACTATGACGAGCATCTGGGTGTCAAATACCCTACTTACGATGGTTTATTAAAACAAAATTAATGTATTTATGATCGATTCTAAGTTTAGAAGTTTGGAATCTGGAAGTTAATCCTATACATATGGAATTTCTGGTCAATGAGTAAAACCAATTGTGTTTGTGAATTTGATCTTGTCATAGATTTGTTTTAGTTTTTTATGTGTCTTTTATTTTGTAATGGATAATTTGGAACACAATTAGATTAAAATTTGTTTTCACCCGTTGTTTTAAGATGTTTTTTCTTCACAAAAAGATTATGTTCGTGTTAAATTGATTGTGTCTGTAGTTGATTCTAAGATTAGGGGTTTGAAATTTTGACCTATATTTCAAATGGTTAATCCTAGGATCAACATATATAGAAGTTTTAGTCAAAGACTAAAACCAATTGTGTTTGTGTGTCTGATCTTATCAGAAATTTGATTTTTAATTTATATGTGTGTTTTATTTTGTAATTGGTGATTATAAATCAGTTGTTTCTCTTAATGATAAGATTCTTTCTTATTGTATGATGCAACATGATTTTTTTCTATAATGAAAAAAAAAATAGATGAAATGGTCTTTGGATTATGGAGAATTCAGTTTGGTGCTTAAACAAATATTGTTTGTGTTTTGCAGGATTCTTGCAAATAGACAATCTGCTGCACGATCGAAAGAGAGGAAAACTCGATATACAAGTGAGCTGGAGAGGAAAGTGCAGACGCTTCAAACTGAAGCAACTAACCTCTCTGCACAACTTACAGTCCTTCAGGTATGTTATTTCCTTTTCATTTCACTGTTCTGAATTGTAGCTTTGAATGAATAGATGTGAATTTGTTTGTAACATGTTCTTGTTGGTGGTTTATGGAGCCCTCCATCTTTAACAATGATGTAGATTTATTTCTGTCTGATTTTGAGTTGTGCGGTCATAACTGTTTATGGAACCCACATAATACCAAGGATATGCATGTTGCATGTGTGTAGGTACTAGGTAGGTATTTATGTACACATATACATACATACATACAAATGTATAGTTTGGTGAAATTAAATTTAATTACTCTATTACATCCTATATAATTTGCGTTACAACCTATGAAGCACGGACACTCCTCAGGTTAGGCGTGTCCTGTTGTCGAACATGTGTCGTTGTCCGACACCAATACATATGATTACACTGAATTATGTCATTTTCTTAAATTATTATCAGTGTCGATGCGTCAGTGTACGTGTCGTGTCCTGTGTCTGTGCTTCATAGGTTACTACACGCTTCCCTTGCATTTGGACACTGTACTCATAACTTTGAACTGGCTTTGAAGCCTACATATCATCTGAACTTTTCTATAAATTTTCATATTCCTCTTTTATCAAAGGGGTGTTTATTTAAAAATTTAAAAAAGTTGTGATCTCTGTAATTTTATGCTTGAATTTTTTTCTGTTATCGATTACCATACAAATCTTTTAAGTCTTTTTCTATTAAGTGTTCTATGAAATGGGGCCGTTTTGATCAAATTTTAACTGATTCTGATTGTGAACCATTAAACCTGAGACTGCTTAATCTGAAACTAATTATAGACCTCATTTTGATTATGATTGCATTATCCATCTTCTGTTTCATGATTTAGTTCATTATTCACTACTAGTGTCATTAAACATCTTCCCTACTTTCTATGTTTTCAAAGTAATTTCACTATAAGCAACTCTTTTGTGAGCTCTGCCGATTTCGTGCTTGTATTTCCACAAAATTTTACGTAGATGGTCCTAGGCCAGGATAAAAAGGAGGGTTTTTTTTCCTAAAGTTCAACCAATCCTATTTTACACGATTTAGCTATGCAATCATGCTTACGAAAAATTGGTTTTTGATGCTGTCACTGTCCATGTTTTCCTAACTAAAAGATGTGCTGCAGTGTGTCATACAGTCTGCAGTGATCTCATTATTTTCATGCATAAATATAAATCGAGCCTTCACCATATGGTATAAGATTTTTCTGAAACCATTTTATATCGTTGAAGTAGGTTGGTTTATTTTTGGATCCTTAATCTTGTGGCAATCCTTTCCAAGGTGCAGAAACATGAGTGCCTAGTTTTCGAAAATAAAACCAAATTTATGTAACAACCAACTGTAGTGGACGCTACTGGATGCATACGTTTGCATAGATAGATGACATGATTGCTCCATAAATTAATCACAGTATCTTGTTAGGATTTATGTTCGTCTGGCTTTATTACAGTGTACAAATGCAAGATTTTACTGGTGCATACTCTAAGTGTGTTTGAGGGAATCTTGGTTGAGTTTAGAGAATCATTTTATATGCCAATTTTGTGGTGTTGTGATGAGTGAAGATGGCAAGATTCTTTGAGTGTACTATCTCTGGTGATCTGGTCCTTTTATCGTCACTTTAGTAGAATAATTTTGTTCTTATGTATTTGTCTTTTTCAAAGTTCATTACAACACGTACTTTTATTTCGTCAAAAATACCCTTAAGTATTTACTACTGAGAGAGAAATAAGTGAAATGATATGGTAAAGTTTAGGCTATTATAGGAAAAAGACAAATAATTCAACAAAATTTAGTTATTTTCTTGGTATGTTAAATAACCTTAAAACGAGAACTAAAAAGGTGAGAAACGTCGGAATTCTCAAGAATTATTCCATTTAGTTACTTCTATGGAATACATTGGTCTTCTTAGTTCCTTTTAGTTTTCTGACTAGTGACTATGTTAGAGGGCTTTCTTCCATAATACTGGGAGAGATTGGCATGCATTGTTCTATAATATTAGATTCACGATTTTGAAAATAGATGTTGCGATTCTCGATTTGATATTAACCATCCTTAAGACAGATATTTTTGAGTAAAGTGGTAATTATCCAGGCATTCAACCCACATGGTCCCCTTGGTTTGTTGGATTACAGATTCAAAACATAATTGTTGCCTTTTCATGTGATTTTTAGATGGATAGGTGGTCCCAACCACTCCAAGTCATCAAATATCTATGATCTAAATTTTTACTGACTGAATTAATTTAAATGTTATGCCTCTCGCACGCTGTTAATTTCAATTTGTGTAAACTTAAAAAATGTGCAAAAGAATAAAAAGGAAGCAAACTAATCATTGAATCATGATGCAGAGAGACACCACTGATTTGACTGCTCAGAATAAGGAGCTCAAAATGAAGTTAGATGCCTTCGAGCAACAAGCAAAGCTTAGAGAAGGTATGTATCGTTTCATATTTCTTGATCCATAAAAAAGTGGATTTTGCTTCCCCCTTTATCACATCTTTATTGAATTGGACTAGAAAAAGGCTGAATCATTCATTTGTTTGTTGTGCGAAAAAAGATCTTGTGAATCTTCATTAATATCTATCAATTTTACCTTTTTTAAAACTATGCTACAAAAGTTGGCTTAAATACAGTTTTGGTCCTGCTATTTTGCATCATTTACGATTTTGGACCCTTAGTTTTGAAAATATCCGATTTTTCCCTATCTAACGTATTTAGGGATGCTTTTATAAGCGAGATTAAATGTGAATCCACTTAGACAATGTCACACTTTAAATTTAGTTGCTTTTGTGATATAAATCGGTGTATATTTTGATGACATGAAGATTAATTCCAAAGAAATATCATTGCTTGAAATTTGACCATTTTTGCAAAACACTTTTGCTTGTTATCAAGTTTTACCATTTAAATATGAACATGGCTACACTTTGTGATTGCAGATCTCAATGAAGCATTGAAGAAAGAACTTCAACGCCTTAGGGCGCAAAAGAATCATTTGGCTGCCGTTGCCGGTAATCCTTCATTTAACGGGATGTTCTCGCAATTTGCTACACAATTAACCATGCAACAGATGAGTAATCCTCAACCCCAGCAGACACAACCTGGCATGCCGCCTTCTCGTTCTGATCAACCCTTCAACGGTCGTGGTCGCTCTAACTTCATGGACTTCAATTACCAAAAGTAG
Protein sequence

>MS.gene000218.t1

MEPNNFTRKPPPVIIDLENMPPSRGTHHRRSHSDTTFRFAANFDDLLTFDPSDFDISNLPLPSPDAVPMDSDESIGKSASEGRHLRSLSVDSEFFDGLGFGGEGEKVEERKVSRHRYSSSMDGSEMGLFEVGDGVKKSMPAEKLAELALIDPKRAKRILANRQSAARSKERKTRYTSELERKVQTLQTEATNLSAQLTVLQRDTTDLTAQNKELKMKLDAFEQQAKLREDLNEALKKELQRLRAQKNHLAAVAGNPSFNGMFSQFATQLTMQQMSNPQPQQTQPGMPPSRSDQPFNGRGRSNFMDFNYQK