AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene000243

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000243.t1 MTR_1g023660 55.263 114 51 0 176 289 227 340 1.67e-45 157
MS.gene000243.t1 MTR_8g099780 32.806 253 163 4 40 289 64 312 1.76e-44 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000243.t1 AT2G01930 51.163 301 117 10 1 289 1 283 1.05e-94 281
MS.gene000243.t1 AT2G01930 51.163 301 117 10 1 289 1 283 1.05e-94 281
MS.gene000243.t1 AT1G14685 50.847 295 123 8 1 289 1 279 3.53e-88 264
MS.gene000243.t1 AT1G14685 50.847 295 123 8 1 289 1 279 3.53e-88 264
MS.gene000243.t1 AT1G14685 50.847 295 123 8 1 289 1 279 3.53e-88 264
MS.gene000243.t1 AT1G14685 50.847 295 123 8 1 289 1 279 3.53e-88 264
MS.gene000243.t1 AT1G68120 46.780 295 120 10 4 289 3 269 7.62e-77 235
MS.gene000243.t1 AT2G35550 54.422 147 65 2 143 289 82 226 6.13e-50 165
MS.gene000243.t1 AT2G35550 54.422 147 65 2 143 289 82 226 6.13e-50 165
MS.gene000243.t1 AT2G35550 54.422 147 65 2 143 289 82 226 6.13e-50 165
MS.gene000243.t1 AT2G35550 54.422 147 65 2 143 289 127 271 8.48e-50 166
MS.gene000243.t1 AT2G21240 32.830 265 163 5 28 289 44 296 4.84e-44 152
MS.gene000243.t1 AT2G21240 32.830 265 163 5 28 289 44 296 4.84e-44 152
MS.gene000243.t1 AT5G42520 56.075 107 46 1 184 289 176 282 5.36e-42 146
MS.gene000243.t1 AT5G42520 56.075 107 46 1 184 289 232 338 7.85e-42 147
MS.gene000243.t1 AT5G42520 56.075 107 46 1 184 289 236 342 1.06e-41 147
MS.gene000243.t1 AT4G38910 43.478 138 77 1 152 289 122 258 1.21e-41 144
MS.gene000243.t1 AT4G38910 43.478 138 77 1 152 289 147 283 1.70e-41 145

Find 97 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATATCACCATCGGGAAAT+TGG 0.178341 6.1:+65658484 MS.gene000243:CDS
CGATAGATTTGAGGACTTAT+TGG 0.234611 6.1:+65659133 MS.gene000243:CDS
TGCAATTAACGGGATTGATT+TGG 0.279573 6.1:+65658876 MS.gene000243:CDS
GATAGATTTGAGGACTTATT+GGG 0.312732 6.1:+65659134 MS.gene000243:CDS
CCAACAAGTTTGTTACTATC+AGG 0.343708 6.1:+65659169 MS.gene000243:CDS
GCCTCAAACTACTTACCCTT+TGG 0.344791 6.1:+65658510 MS.gene000243:CDS
ATTCCTGTTTGTTCTTGCAC+TGG 0.347046 6.1:+65658916 MS.gene000243:CDS
CTTACCCTTTGGATTATATG+AGG 0.349085 6.1:+65658521 MS.gene000243:CDS
CACCTCAACAATGTTATAGA+TGG 0.355446 6.1:+65658941 MS.gene000243:CDS
ATGGACTTAACATAAGCAAT+TGG 0.360767 6.1:+65658338 MS.gene000243:CDS
TTTCTAATCCGATAGATTTG+AGG 0.399273 6.1:+65659124 MS.gene000243:CDS
AATGATTCGACCATGTGAAT+TGG 0.408906 6.1:+65658660 MS.gene000243:CDS
CATATCACCATCGGGAAATT+GGG 0.409037 6.1:+65658485 MS.gene000243:CDS
CCGGAAAAGCCGCCTCTGAT+TGG 0.413055 6.1:+65658424 MS.gene000243:CDS
TGGACTTAACATAAGCAATT+GGG 0.420997 6.1:+65658339 MS.gene000243:CDS
CTACGGAAATTGCAATTAAC+GGG 0.422090 6.1:+65658866 MS.gene000243:CDS
TTAGGAGACTTCGGCACCTT+CGG 0.426454 6.1:-65658757 None:intergenic
TCGACCATGTGAATTGGTTA+AGG 0.427145 6.1:+65658666 MS.gene000243:CDS
ACTACGGAAATTGCAATTAA+CGG 0.434305 6.1:+65658865 MS.gene000243:CDS
CCTGATAGTAACAAACTTGT+TGG 0.444146 6.1:-65659169 None:intergenic
CTATAACCTGGAGGGTTAGT+AGG 0.446214 6.1:-65658598 None:intergenic
CGAAATGCCGCGGTTATGTC+GGG 0.452368 6.1:+65658451 MS.gene000243:CDS
CTCTTCGGCTTCTTTGCCTT+AGG 0.455380 6.1:-65658775 None:intergenic
ACCACAGGTGCTTCCTCCAT+TGG 0.459398 6.1:-65658697 None:intergenic
TAATTTAGTGTTGTAATGGA+TGG 0.462352 6.1:+65658310 None:intergenic
ATAGATGGGGCTCGGGTGGA+TGG 0.464652 6.1:+65658956 MS.gene000243:CDS
TTCCTGTTTGTTCTTGCACT+GGG 0.468493 6.1:+65658917 MS.gene000243:CDS
TGATTCTTAAAAGATGAAAC+AGG 0.473276 6.1:-65658373 None:intergenic
AGGTTATAGTACTAGTATTC+CGG 0.475931 6.1:+65658612 MS.gene000243:CDS
GTTGTAATGGATGGAGATAA+TGG 0.478647 6.1:+65658319 None:intergenic
ACAATGTTATAGATGGGGCT+CGG 0.487220 6.1:+65658948 MS.gene000243:CDS
GGCACACGAGGTCCTCTCTT+CGG 0.493154 6.1:-65658790 None:intergenic
CCATTCACCTTCTCGACCAC+AGG 0.494618 6.1:-65658712 None:intergenic
ACAACTGATGCCATCGATGC+CGG 0.499881 6.1:+65658405 MS.gene000243:CDS
TTCTTTGCCTTAGGAGACTT+CGG 0.501514 6.1:-65658766 None:intergenic
GTCCCAGTGCAAGAACAAAC+AGG 0.501675 6.1:-65658919 None:intergenic
TCGAAATGCCGCGGTTATGT+CGG 0.501909 6.1:+65658450 MS.gene000243:CDS
GTGCAAGAACAAACAGGAAT+CGG 0.503075 6.1:-65658913 None:intergenic
GAAGGAGAATTCTCGTCCTT+CGG 0.503811 6.1:-65658811 None:intergenic
CAATGTTATAGATGGGGCTC+GGG 0.507375 6.1:+65658949 MS.gene000243:CDS
CCTGTGGTCGAGAAGGTGAA+TGG 0.509475 6.1:+65658712 MS.gene000243:CDS
ACCTCAACAATGTTATAGAT+GGG 0.523017 6.1:+65658942 MS.gene000243:CDS
CCGCGTCGTTTAGTACTCAT+AGG 0.528654 6.1:-65659021 None:intergenic
CAATAAGTCCTCAAATCTAT+CGG 0.528692 6.1:-65659132 None:intergenic
GTCGAGAAGGTGAATGGAAC+TGG 0.530658 6.1:+65658718 MS.gene000243:CDS
TCCAAAGGGTAAGTAGTTTG+AGG 0.531276 6.1:-65658511 None:intergenic
GAAGGACGAGAATTCTCCTT+CGG 0.531353 6.1:+65658813 MS.gene000243:CDS
CTTGGTGTTCGTTGAACCGA+AGG 0.532361 6.1:-65658829 None:intergenic
TTACCCTTTGGATTATATGA+GGG 0.536203 6.1:+65658522 MS.gene000243:CDS
CATCCCTCATATAATCCAAA+GGG 0.541845 6.1:-65658525 None:intergenic
TGTTATAGATGGGGCTCGGG+TGG 0.542239 6.1:+65658952 MS.gene000243:CDS
TGGATTATATGAGGGATGCA+TGG 0.548813 6.1:+65658530 MS.gene000243:CDS
TTCTCGTCCTTCGGCACACG+AGG 0.552572 6.1:-65658802 None:intergenic
TAACGGTGCATATCACCATC+GGG 0.558932 6.1:+65658477 MS.gene000243:CDS
ATTAGAGAAACTTGCAGCCG+AGG 0.559521 6.1:+65659092 MS.gene000243:CDS
ATTAGAAAAGTTATAACCCT+CGG 0.560267 6.1:-65659109 None:intergenic
AGGACTTATTGGGCAAAACA+TGG 0.561945 6.1:+65659144 MS.gene000243:CDS
ATGATACCTACTAACCCTCC+AGG 0.562585 6.1:+65658592 MS.gene000243:CDS
GAGAGGACCTCGTGTGCCGA+AGG 0.571472 6.1:+65658795 MS.gene000243:CDS
GCCGGAAGGAAAATGAGTAT+AGG 0.573233 6.1:+65659054 MS.gene000243:CDS
TTAGAGAAACTTGCAGCCGA+GGG 0.574547 6.1:+65659093 MS.gene000243:CDS
CGACGCGGTGCTAGAATAGC+CGG 0.576753 6.1:+65659036 MS.gene000243:CDS
TGATGAGCTGAAGATGTCTC+CGG 0.579222 6.1:-65658631 None:intergenic
GCGGTTATGTCGGGAACTAA+CGG 0.579757 6.1:+65658460 MS.gene000243:CDS
GGAAGCACCTGTGGTCGAGA+AGG 0.588134 6.1:+65658705 MS.gene000243:CDS
GAAGGTGCCGAAGTCTCCTA+AGG 0.590939 6.1:+65658759 MS.gene000243:CDS
GCATCCCTCATATAATCCAA+AGG 0.600896 6.1:-65658526 None:intergenic
GGACTTAACATAAGCAATTG+GGG 0.601047 6.1:+65658340 MS.gene000243:CDS
TTCGGTTCAACGAACACCAA+GGG 0.601561 6.1:+65658831 MS.gene000243:CDS
GCATTTCGACTTCCAATCAG+AGG 0.603067 6.1:-65658436 None:intergenic
CAAGTTTGTTACTATCAGGT+AGG 0.604667 6.1:+65659173 MS.gene000243:CDS
GCCAATGGAGGAAGCACCTG+TGG 0.607095 6.1:+65658696 MS.gene000243:CDS
CTAACGGTGCATATCACCAT+CGG 0.608113 6.1:+65658476 MS.gene000243:CDS
AAGGGCACAAAAGAAAACTA+CGG 0.609634 6.1:+65658849 MS.gene000243:CDS
CGTTTAGTACTCATAGGCAA+AGG 0.610952 6.1:-65659015 None:intergenic
ATGCATGGATTAGTAGTCAG+AGG 0.611474 6.1:+65658545 MS.gene000243:CDS
GAGGCATCCCAATTTCCCGA+TGG 0.615246 6.1:-65658492 None:intergenic
AAGGCAAAGAAGCCGAAGAG+AGG 0.622231 6.1:+65658778 MS.gene000243:CDS
CCCCATCTATAACATTGTTG+AGG 0.623582 6.1:-65658943 None:intergenic
TAAGAAGAGGCAAGGACCGA+AGG 0.629324 6.1:+65658741 MS.gene000243:CDS
TACTAGTACTATAACCTGGA+GGG 0.630649 6.1:-65658606 None:intergenic
TCTTCCTTAACCAATTCACA+TGG 0.638004 6.1:-65658670 None:intergenic
GGAATACTAGTACTATAACC+TGG 0.638956 6.1:-65658610 None:intergenic
GGTTAAGGAAGAAATGCCAA+TGG 0.642003 6.1:+65658681 MS.gene000243:CDS
TGCATGGATTAGTAGTCAGA+GGG 0.642777 6.1:+65658546 MS.gene000243:CDS
TGAATGGAACTGGTAAGAAG+AGG 0.650068 6.1:+65658728 MS.gene000243:CDS
GGAACTGGTAAGAAGAGGCA+AGG 0.651851 6.1:+65658733 MS.gene000243:CDS
TTTCGACTTCCAATCAGAGG+CGG 0.656585 6.1:-65658433 None:intergenic
CCTCAACAATGTTATAGATG+GGG 0.670226 6.1:+65658943 MS.gene000243:CDS
TAAGGAAGAAATGCCAATGG+AGG 0.676077 6.1:+65658684 MS.gene000243:CDS
CTTCGGTTCAACGAACACCA+AGG 0.677515 6.1:+65658830 MS.gene000243:CDS
GATTGGAAGTCGAAATGCCG+CGG 0.697890 6.1:+65658441 MS.gene000243:CDS
ATACTAGTACTATAACCTGG+AGG 0.700408 6.1:-65658607 None:intergenic
GCAGTCTGCATGCTGCACAA+CGG 0.723033 6.1:+65658978 MS.gene000243:CDS
GCGGTGCTAGAATAGCCGGA+AGG 0.737428 6.1:+65659040 MS.gene000243:CDS
GTTAGTTCCCGACATAACCG+CGG 0.737494 6.1:-65658458 None:intergenic
CCTATGAGTACTAAACGACG+CGG 0.777544 6.1:+65659021 MS.gene000243:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATTAGAAAAGTTATAACCCT+CGG - chr6.1:65659112-65659131 None:intergenic 25.0%
! TGATTCTTAAAAGATGAAAC+AGG - chr6.1:65658376-65658395 None:intergenic 25.0%
!!! TCATCTTTTAAGAATCATCT+TGG + chr6.1:65658379-65658398 MS.gene000243:CDS 25.0%
ACCTCAACAATGTTATAGAT+GGG + chr6.1:65658942-65658961 MS.gene000243:CDS 30.0%
ACTACGGAAATTGCAATTAA+CGG + chr6.1:65658865-65658884 MS.gene000243:CDS 30.0%
AGGTTATAGTACTAGTATTC+CGG + chr6.1:65658612-65658631 MS.gene000243:CDS 30.0%
ATGGACTTAACATAAGCAAT+TGG + chr6.1:65658338-65658357 MS.gene000243:CDS 30.0%
CAATAAGTCCTCAAATCTAT+CGG - chr6.1:65659135-65659154 None:intergenic 30.0%
GATAGATTTGAGGACTTATT+GGG + chr6.1:65659134-65659153 MS.gene000243:CDS 30.0%
TGGACTTAACATAAGCAATT+GGG + chr6.1:65658339-65658358 MS.gene000243:CDS 30.0%
TTACCCTTTGGATTATATGA+GGG + chr6.1:65658522-65658541 MS.gene000243:CDS 30.0%
TTTCTAATCCGATAGATTTG+AGG + chr6.1:65659124-65659143 MS.gene000243:CDS 30.0%
AATGATTCGACCATGTGAAT+TGG + chr6.1:65658660-65658679 MS.gene000243:CDS 35.0%
ATACTAGTACTATAACCTGG+AGG - chr6.1:65658610-65658629 None:intergenic 35.0%
CACCTCAACAATGTTATAGA+TGG + chr6.1:65658941-65658960 MS.gene000243:CDS 35.0%
CATCCCTCATATAATCCAAA+GGG - chr6.1:65658528-65658547 None:intergenic 35.0%
CCTCAACAATGTTATAGATG+GGG + chr6.1:65658943-65658962 MS.gene000243:CDS 35.0%
CCTGATAGTAACAAACTTGT+TGG - chr6.1:65659172-65659191 None:intergenic 35.0%
CGATAGATTTGAGGACTTAT+TGG + chr6.1:65659133-65659152 MS.gene000243:CDS 35.0%
CTACGGAAATTGCAATTAAC+GGG + chr6.1:65658866-65658885 MS.gene000243:CDS 35.0%
CTTACCCTTTGGATTATATG+AGG + chr6.1:65658521-65658540 MS.gene000243:CDS 35.0%
GGAATACTAGTACTATAACC+TGG - chr6.1:65658613-65658632 None:intergenic 35.0%
GGACTTAACATAAGCAATTG+GGG + chr6.1:65658340-65658359 MS.gene000243:CDS 35.0%
TACTAGTACTATAACCTGGA+GGG - chr6.1:65658609-65658628 None:intergenic 35.0%
TCTTCCTTAACCAATTCACA+TGG - chr6.1:65658673-65658692 None:intergenic 35.0%
TGCAATTAACGGGATTGATT+TGG + chr6.1:65658876-65658895 MS.gene000243:CDS 35.0%
! AAGGGCACAAAAGAAAACTA+CGG + chr6.1:65658849-65658868 MS.gene000243:CDS 35.0%
! TCCTATACTCATTTTCCTTC+CGG - chr6.1:65659058-65659077 None:intergenic 35.0%
!! CCAACAAGTTTGTTACTATC+AGG + chr6.1:65659169-65659188 MS.gene000243:CDS 35.0%
ACAATGTTATAGATGGGGCT+CGG + chr6.1:65658948-65658967 MS.gene000243:CDS 40.0%
AGGACTTATTGGGCAAAACA+TGG + chr6.1:65659144-65659163 MS.gene000243:CDS 40.0%
ATTCCTGTTTGTTCTTGCAC+TGG + chr6.1:65658916-65658935 MS.gene000243:CDS 40.0%
CATATCACCATCGGGAAATT+GGG + chr6.1:65658485-65658504 MS.gene000243:CDS 40.0%
CCCCATCTATAACATTGTTG+AGG - chr6.1:65658946-65658965 None:intergenic 40.0%
CGTTTAGTACTCATAGGCAA+AGG - chr6.1:65659018-65659037 None:intergenic 40.0%
GCATCCCTCATATAATCCAA+AGG - chr6.1:65658529-65658548 None:intergenic 40.0%
GGTTAAGGAAGAAATGCCAA+TGG + chr6.1:65658681-65658700 MS.gene000243:CDS 40.0%
GTGCAAGAACAAACAGGAAT+CGG - chr6.1:65658916-65658935 None:intergenic 40.0%
TAAGGAAGAAATGCCAATGG+AGG + chr6.1:65658684-65658703 MS.gene000243:CDS 40.0%
TCCAAAGGGTAAGTAGTTTG+AGG - chr6.1:65658514-65658533 None:intergenic 40.0%
TCGACCATGTGAATTGGTTA+AGG + chr6.1:65658666-65658685 MS.gene000243:CDS 40.0%
TGAATGGAACTGGTAAGAAG+AGG + chr6.1:65658728-65658747 MS.gene000243:CDS 40.0%
TGGATTATATGAGGGATGCA+TGG + chr6.1:65658530-65658549 MS.gene000243:CDS 40.0%
TTCCTGTTTGTTCTTGCACT+GGG + chr6.1:65658917-65658936 MS.gene000243:CDS 40.0%
TTCTTTGCCTTAGGAGACTT+CGG - chr6.1:65658769-65658788 None:intergenic 40.0%
! GTAGTTTTCTTTTGTGCCCT+TGG - chr6.1:65658850-65658869 None:intergenic 40.0%
!! ATGCATGGATTAGTAGTCAG+AGG + chr6.1:65658545-65658564 MS.gene000243:CDS 40.0%
!! TGCATGGATTAGTAGTCAGA+GGG + chr6.1:65658546-65658565 MS.gene000243:CDS 40.0%
ATGATACCTACTAACCCTCC+AGG + chr6.1:65658592-65658611 MS.gene000243:CDS 45.0%
ATTAGAGAAACTTGCAGCCG+AGG + chr6.1:65659092-65659111 MS.gene000243:CDS 45.0%
CAATGTTATAGATGGGGCTC+GGG + chr6.1:65658949-65658968 MS.gene000243:CDS 45.0%
CCTATGAGTACTAAACGACG+CGG + chr6.1:65659021-65659040 MS.gene000243:CDS 45.0%
CTAACGGTGCATATCACCAT+CGG + chr6.1:65658476-65658495 MS.gene000243:CDS 45.0%
GAAGGACGAGAATTCTCCTT+CGG + chr6.1:65658813-65658832 MS.gene000243:CDS 45.0%
GAAGGAGAATTCTCGTCCTT+CGG - chr6.1:65658814-65658833 None:intergenic 45.0%
GCATATCACCATCGGGAAAT+TGG + chr6.1:65658484-65658503 MS.gene000243:CDS 45.0%
GCATTTCGACTTCCAATCAG+AGG - chr6.1:65658439-65658458 None:intergenic 45.0%
GCCGGAAGGAAAATGAGTAT+AGG + chr6.1:65659054-65659073 MS.gene000243:CDS 45.0%
GCCTCAAACTACTTACCCTT+TGG + chr6.1:65658510-65658529 MS.gene000243:CDS 45.0%
TAACGGTGCATATCACCATC+GGG + chr6.1:65658477-65658496 MS.gene000243:CDS 45.0%
TGATGAGCTGAAGATGTCTC+CGG - chr6.1:65658634-65658653 None:intergenic 45.0%
TTAGAGAAACTTGCAGCCGA+GGG + chr6.1:65659093-65659112 MS.gene000243:CDS 45.0%
TTCGGTTCAACGAACACCAA+GGG + chr6.1:65658831-65658850 MS.gene000243:CDS 45.0%
TTTCGACTTCCAATCAGAGG+CGG - chr6.1:65658436-65658455 None:intergenic 45.0%
! CTATAACCTGGAGGGTTAGT+AGG - chr6.1:65658601-65658620 None:intergenic 45.0%
AAGGCAAAGAAGCCGAAGAG+AGG + chr6.1:65658778-65658797 MS.gene000243:CDS 50.0%
ACAACTGATGCCATCGATGC+CGG + chr6.1:65658405-65658424 MS.gene000243:CDS 50.0%
CCGCGTCGTTTAGTACTCAT+AGG - chr6.1:65659024-65659043 None:intergenic 50.0%
CTCTTCGGCTTCTTTGCCTT+AGG - chr6.1:65658778-65658797 None:intergenic 50.0%
CTTCGGTTCAACGAACACCA+AGG + chr6.1:65658830-65658849 MS.gene000243:CDS 50.0%
GATTGGAAGTCGAAATGCCG+CGG + chr6.1:65658441-65658460 MS.gene000243:CDS 50.0%
GCGGTTATGTCGGGAACTAA+CGG + chr6.1:65658460-65658479 MS.gene000243:CDS 50.0%
GGAACTGGTAAGAAGAGGCA+AGG + chr6.1:65658733-65658752 MS.gene000243:CDS 50.0%
GTCCCAGTGCAAGAACAAAC+AGG - chr6.1:65658922-65658941 None:intergenic 50.0%
GTCGAGAAGGTGAATGGAAC+TGG + chr6.1:65658718-65658737 MS.gene000243:CDS 50.0%
GTTAGTTCCCGACATAACCG+CGG - chr6.1:65658461-65658480 None:intergenic 50.0%
TAAGAAGAGGCAAGGACCGA+AGG + chr6.1:65658741-65658760 MS.gene000243:CDS 50.0%
TCGAAATGCCGCGGTTATGT+CGG + chr6.1:65658450-65658469 MS.gene000243:CDS 50.0%
TTAGGAGACTTCGGCACCTT+CGG - chr6.1:65658760-65658779 None:intergenic 50.0%
!! CTTGGTGTTCGTTGAACCGA+AGG - chr6.1:65658832-65658851 None:intergenic 50.0%
ACCACAGGTGCTTCCTCCAT+TGG - chr6.1:65658700-65658719 None:intergenic 55.0%
CCATTCACCTTCTCGACCAC+AGG - chr6.1:65658715-65658734 None:intergenic 55.0%
CCTGTGGTCGAGAAGGTGAA+TGG + chr6.1:65658712-65658731 MS.gene000243:CDS 55.0%
CGAAATGCCGCGGTTATGTC+GGG + chr6.1:65658451-65658470 MS.gene000243:CDS 55.0%
GCAGTCTGCATGCTGCACAA+CGG + chr6.1:65658978-65658997 MS.gene000243:CDS 55.0%
TGTTATAGATGGGGCTCGGG+TGG + chr6.1:65658952-65658971 MS.gene000243:CDS 55.0%
! CCAATCAGAGGCGGCTTTTC+CGG - chr6.1:65658427-65658446 None:intergenic 55.0%
! GAGGCATCCCAATTTCCCGA+TGG - chr6.1:65658495-65658514 None:intergenic 55.0%
!! GAAGGTGCCGAAGTCTCCTA+AGG + chr6.1:65658759-65658778 MS.gene000243:CDS 55.0%
ATAGATGGGGCTCGGGTGGA+TGG + chr6.1:65658956-65658975 MS.gene000243:CDS 60.0%
CCGGAAAAGCCGCCTCTGAT+TGG + chr6.1:65658424-65658443 MS.gene000243:CDS 60.0%
GGCACACGAGGTCCTCTCTT+CGG - chr6.1:65658793-65658812 None:intergenic 60.0%
TTCTCGTCCTTCGGCACACG+AGG - chr6.1:65658805-65658824 None:intergenic 60.0%
! CGACGCGGTGCTAGAATAGC+CGG + chr6.1:65659036-65659055 MS.gene000243:CDS 60.0%
! GCGGTGCTAGAATAGCCGGA+AGG + chr6.1:65659040-65659059 MS.gene000243:CDS 60.0%
!! GCCAATGGAGGAAGCACCTG+TGG + chr6.1:65658696-65658715 MS.gene000243:CDS 60.0%
!! GGAAGCACCTGTGGTCGAGA+AGG + chr6.1:65658705-65658724 MS.gene000243:CDS 60.0%
GAGAGGACCTCGTGTGCCGA+AGG + chr6.1:65658795-65658814 MS.gene000243:CDS 65.0%
!! GGCGGCTTTTCCGGCATCGA+TGG - chr6.1:65658418-65658437 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 65658325 65659194 65658325 ID=MS.gene000243
chr6.1 mRNA 65658325 65659194 65658325 ID=MS.gene000243.t1;Parent=MS.gene000243
chr6.1 exon 65658325 65659194 65658325 ID=MS.gene000243.t1.exon1;Parent=MS.gene000243.t1
chr6.1 CDS 65658325 65659194 65658325 ID=cds.MS.gene000243.t1;Parent=MS.gene000243.t1
Gene Sequence

>MS.gene000243

ATGGATGGAGATAATGGACTTAACATAAGCAATTGGGGATACTATGAACCTGTTTCATCTTTTAAGAATCATCTTGGTTTACAACTGATGCCATCGATGCCGGAAAAGCCGCCTCTGATTGGAAGTCGAAATGCCGCGGTTATGTCGGGAACTAACGGTGCATATCACCATCGGGAAATTGGGATGCCTCAAACTACTTACCCTTTGGATTATATGAGGGATGCATGGATTAGTAGTCAGAGGGATAATAAGTATATGAATATGAATATGATACCTACTAACCCTCCAGGTTATAGTACTAGTATTCCGGAGACATCTTCAGCTCATCATATTCAAATGATTCGACCATGTGAATTGGTTAAGGAAGAAATGCCAATGGAGGAAGCACCTGTGGTCGAGAAGGTGAATGGAACTGGTAAGAAGAGGCAAGGACCGAAGGTGCCGAAGTCTCCTAAGGCAAAGAAGCCGAAGAGAGGACCTCGTGTGCCGAAGGACGAGAATTCTCCTTCGGTTCAACGAACACCAAGGGCACAAAAGAAAACTACGGAAATTGCAATTAACGGGATTGATTTGGATATTTCAAGTATTCCGATTCCTGTTTGTTCTTGCACTGGGACACCTCAACAATGTTATAGATGGGGCTCGGGTGGATGGCAGTCTGCATGCTGCACAACGGCTATATCGATATATCCTTTGCCTATGAGTACTAAACGACGCGGTGCTAGAATAGCCGGAAGGAAAATGAGTATAGGAGCTTTTAAGAAAGTATTAGAGAAACTTGCAGCCGAGGGTTATAACTTTTCTAATCCGATAGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTTACTATCAGGTAG
Protein sequence

>MS.gene000243.t1

MDGDNGLNISNWGYYEPVSSFKNHLGLQLMPSMPEKPPLIGSRNAAVMSGTNGAYHHREIGMPQTTYPLDYMRDAWISSQRDNKYMNMNMIPTNPPGYSTSIPETSSAHHIQMIRPCELVKEEMPMEEAPVVEKVNGTGKKRQGPKVPKSPKAKKPKRGPRVPKDENSPSVQRTPRAQKKTTEIAINGIDLDISSIPIPVCSCTGTPQQCYRWGSGGWQSACCTTAISIYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR