AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene000333

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000333.t1 MTR_7g005280 78.475 223 11 5 2 189 35 255 1.57e-116 331
MS.gene000333.t1 MTR_7g070140 66.258 163 14 3 27 189 12 133 3.38e-65 197
MS.gene000333.t1 MTR_8g099750 56.849 146 52 3 3 138 35 179 1.54e-53 170
MS.gene000333.t1 MTR_3g098810 58.333 144 48 3 3 134 35 178 4.49e-51 164
MS.gene000333.t1 MTR_5g041940 47.126 174 79 4 8 170 29 200 9.69e-45 149
MS.gene000333.t1 MTR_7g085220 50.649 154 57 5 2 137 28 180 1.86e-44 150
MS.gene000333.t1 MTR_4g081870 57.143 133 45 4 8 130 35 165 2.50e-44 148
MS.gene000333.t1 MTR_4g089135 51.299 154 46 3 2 126 35 188 3.34e-44 150
MS.gene000333.t1 MTR_3g098810 61.538 117 42 2 3 116 35 151 5.05e-44 144
MS.gene000333.t1 MTR_2g080010 52.817 142 50 3 2 126 35 176 5.62e-43 147
MS.gene000333.t1 MTR_2g064090 44.262 183 87 5 2 171 26 206 3.22e-42 145
MS.gene000333.t1 MTR_7g070150 76.087 92 19 2 70 158 1 92 3.68e-42 137
MS.gene000333.t1 MTR_2157s0010 52.482 141 51 4 2 126 28 168 4.50e-41 140
MS.gene000333.t1 MTR_1g008740 52.174 138 55 3 14 146 46 177 4.76e-41 142
MS.gene000333.t1 MTR_1g008740 52.174 138 55 3 14 146 60 191 5.10e-41 142
MS.gene000333.t1 MTR_3g109340 52.846 123 54 2 14 132 54 176 8.70e-41 141
MS.gene000333.t1 MTR_7g100990 43.750 176 88 4 3 168 32 206 8.77e-41 140
MS.gene000333.t1 MTR_3g109340 52.419 124 54 2 14 132 54 177 1.71e-40 140
MS.gene000333.t1 MTR_3g064580 54.362 149 52 7 2 138 26 170 2.09e-40 145
MS.gene000333.t1 MTR_4g036030 51.880 133 55 4 2 127 27 157 3.03e-40 139
MS.gene000333.t1 MTR_2g093810 51.908 131 53 2 3 123 35 165 4.37e-40 139
MS.gene000333.t1 MTR_3g088110 52.055 146 58 3 2 138 27 169 4.55e-40 137
MS.gene000333.t1 MTR_4g035590 51.852 135 54 5 1 127 26 157 1.02e-39 138
MS.gene000333.t1 MTR_4g108760 51.079 139 58 4 2 132 37 173 1.43e-39 138
MS.gene000333.t1 MTR_1g069805 41.799 189 95 5 14 191 42 226 2.52e-39 135
MS.gene000333.t1 MTR_2g078700 47.826 138 64 2 1 130 42 179 2.57e-39 138
MS.gene000333.t1 MTR_5g021710 45.161 155 76 4 2 149 28 180 3.40e-39 137
MS.gene000333.t1 MTR_8g094580 42.932 191 86 5 2 182 27 204 5.25e-39 135
MS.gene000333.t1 MTR_6g084430 45.509 167 76 6 14 167 37 201 5.59e-39 136
MS.gene000333.t1 MTR_6g032770 46.104 154 69 3 1 146 37 184 6.19e-39 137
MS.gene000333.t1 MTR_8g076110 43.373 166 82 5 2 160 26 186 8.14e-39 135
MS.gene000333.t1 MTR_6g477900 40.741 189 95 6 2 178 26 209 1.82e-38 132
MS.gene000333.t1 MTR_1g096430 47.183 142 66 3 2 136 27 166 1.98e-38 135
MS.gene000333.t1 MTR_3g435150 47.586 145 66 3 2 138 36 178 2.00e-38 134
MS.gene000333.t1 MTR_4g101680 47.183 142 66 3 2 136 27 166 4.97e-38 134
MS.gene000333.t1 MTR_5g012080 48.507 134 60 3 2 127 27 159 5.90e-38 134
MS.gene000333.t1 MTR_2g062730 48.889 135 60 4 1 127 28 161 7.11e-38 133
MS.gene000333.t1 MTR_5g076850 41.441 222 94 9 2 189 26 245 1.05e-37 137
MS.gene000333.t1 MTR_3g070030 49.645 141 60 4 1 132 38 176 2.21e-37 132
MS.gene000333.t1 MTR_2g079990 51.825 137 58 3 2 132 36 170 3.43e-37 132
MS.gene000333.t1 MTR_7g011130 43.258 178 76 5 1 157 38 211 6.70e-37 131
MS.gene000333.t1 MTR_7g097090 52.632 114 50 2 14 124 42 154 7.50e-37 129
MS.gene000333.t1 MTR_5g090970 42.365 203 85 7 2 189 38 223 1.75e-36 129
MS.gene000333.t1 MTR_3g093040 40.556 180 86 7 11 181 137 304 2.14e-36 129
MS.gene000333.t1 MTR_2g064470 40.323 186 91 7 13 190 40 213 2.91e-36 128
MS.gene000333.t1 MTR_5g069030 43.784 185 74 8 13 188 56 219 3.47e-36 133
MS.gene000333.t1 MTR_8g059170 52.632 133 53 4 2 126 34 164 5.34e-36 128
MS.gene000333.t1 MTR_6g012670 46.763 139 64 3 2 132 40 176 5.55e-36 128
MS.gene000333.t1 MTR_5g090970 42.157 204 85 7 2 189 38 224 6.46e-36 127
MS.gene000333.t1 MTR_3g093050 47.368 152 58 6 13 155 53 191 7.88e-36 132
MS.gene000333.t1 MTR_3g093050 47.368 152 58 6 13 155 53 191 9.38e-36 132
MS.gene000333.t1 MTR_7g011120 46.939 147 61 4 1 132 27 171 1.17e-35 127
MS.gene000333.t1 MTR_3g096140 40.933 193 87 7 2 172 27 214 1.91e-35 125
MS.gene000333.t1 MTR_5g040420 42.857 147 70 2 2 134 34 180 2.58e-35 127
MS.gene000333.t1 MTR_8g024480 44.521 146 60 4 1 127 33 176 7.23e-35 127
MS.gene000333.t1 MTR_3g096140 40.933 193 87 7 2 172 6 193 7.70e-35 125
MS.gene000333.t1 MTR_7g085260 50.000 134 57 4 3 126 38 171 1.02e-34 126
MS.gene000333.t1 MTR_3g096140 40.933 193 87 7 2 172 27 214 1.03e-34 125
MS.gene000333.t1 MTR_3g096920 49.630 135 56 3 2 127 27 158 2.56e-34 123
MS.gene000333.t1 MTR_8g467490 40.541 148 73 2 2 134 34 181 2.77e-34 125
MS.gene000333.t1 MTR_3g070040 46.043 139 66 3 1 132 27 163 3.42e-34 124
MS.gene000333.t1 MTR_8g063550 43.624 149 70 4 2 140 26 170 3.72e-34 124
MS.gene000333.t1 MTR_8g063550 43.624 149 70 4 2 140 26 170 7.23e-34 125
MS.gene000333.t1 MTR_3g116070 54.369 103 44 1 16 115 58 160 1.23e-33 122
MS.gene000333.t1 MTR_8g063550 43.624 149 70 4 2 140 26 170 1.59e-33 124
MS.gene000333.t1 MTR_2g068880 42.138 159 71 4 2 140 42 199 3.07e-33 120
MS.gene000333.t1 MTR_6g011860 33.333 222 113 6 2 189 35 255 3.21e-33 122
MS.gene000333.t1 MTR_1g090723 39.362 188 98 6 1 174 26 211 4.45e-33 124
MS.gene000333.t1 MTR_2g079990 55.263 114 46 2 2 112 36 147 7.29e-33 121
MS.gene000333.t1 MTR_1g090723 39.683 189 95 7 1 174 26 210 9.42e-33 123
MS.gene000333.t1 MTR_1g090723 39.037 187 99 6 1 174 26 210 1.04e-32 123
MS.gene000333.t1 MTR_5g014300 43.704 135 66 2 2 126 26 160 1.52e-32 119
MS.gene000333.t1 MTR_4g098630 42.105 152 79 3 2 144 26 177 1.76e-32 119
MS.gene000333.t1 MTR_0036s0150 48.120 133 56 4 17 140 41 169 1.93e-32 122
MS.gene000333.t1 MTR_8g093580 42.282 149 72 4 2 140 26 170 5.17e-32 120
MS.gene000333.t1 MTR_2g068920 43.836 146 61 4 2 127 41 185 5.46e-32 117
MS.gene000333.t1 MTR_1g097300 38.172 186 96 6 2 173 39 219 2.09e-31 119
MS.gene000333.t1 MTR_8g094580 42.405 158 71 4 32 182 6 150 5.44e-31 113
MS.gene000333.t1 MTR_3g096920 53.636 110 45 2 2 108 27 133 8.19e-30 112
MS.gene000333.t1 MTR_1g090720 46.309 149 62 4 2 135 62 207 8.47e-30 114
MS.gene000333.t1 MTR_4g134460 43.382 136 70 4 2 133 74 206 6.69e-29 111
MS.gene000333.t1 MTR_8g023840 45.690 116 55 3 13 123 43 155 8.73e-29 110
MS.gene000333.t1 MTR_2g086880 45.299 117 54 3 11 123 47 157 1.31e-28 111
MS.gene000333.t1 MTR_2g086880 45.299 117 54 3 11 123 47 157 1.36e-28 111
MS.gene000333.t1 MTR_4g075980 43.443 122 63 3 9 126 42 161 3.00e-27 104
MS.gene000333.t1 MTR_8g023900 34.568 162 95 4 13 169 225 380 2.92e-24 99.0
MS.gene000333.t1 MTR_8g023900 36.434 129 74 3 13 136 44 169 6.71e-20 86.7
MS.gene000333.t1 MTR_2g086690 40.945 127 59 5 13 125 37 161 4.50e-24 95.5
MS.gene000333.t1 MTR_8g023860 39.316 117 63 3 13 124 44 157 1.17e-23 97.1
MS.gene000333.t1 MTR_4g052620 40.476 126 61 5 13 125 37 161 9.86e-23 92.0
MS.gene000333.t1 MTR_8g023930 33.750 160 95 4 13 167 56 209 1.10e-22 94.7
MS.gene000333.t1 MTR_4g094302 35.821 134 68 3 2 124 31 157 1.11e-22 90.5
MS.gene000333.t1 MTR_4g094302 39.252 107 56 2 2 106 31 130 4.57e-21 85.5
MS.gene000333.t1 MTR_7g105170 30.256 195 103 7 12 175 36 228 1.04e-19 84.0
MS.gene000333.t1 MTR_8g023880 36.129 155 71 6 13 147 39 185 9.67e-19 81.6
MS.gene000333.t1 MTR_8g093790 35.256 156 72 7 6 156 33 164 1.25e-18 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000333.t1 AT5G13180 73.881 134 33 1 2 133 34 167 3.02e-72 219
MS.gene000333.t1 AT2G33480 73.438 128 31 2 2 128 35 160 5.48e-66 203
MS.gene000333.t1 AT2G33480 72.308 130 31 2 2 128 35 162 1.17e-65 202
MS.gene000333.t1 AT2G33480 69.524 105 27 2 27 128 3 105 1.78e-48 157
MS.gene000333.t1 AT1G69490 55.714 140 49 4 3 132 30 166 1.70e-43 146
MS.gene000333.t1 AT3G15510 53.521 142 49 3 2 126 37 178 2.33e-43 148
MS.gene000333.t1 AT3G04070 55.319 141 47 4 2 126 30 170 3.15e-43 147
MS.gene000333.t1 AT1G61110 54.545 143 46 4 2 126 36 177 6.85e-43 146
MS.gene000333.t1 AT5G07680 52.518 139 56 4 2 132 23 159 6.88e-42 143
MS.gene000333.t1 AT5G07680 52.518 139 56 4 2 132 37 173 7.17e-42 144
MS.gene000333.t1 AT2G24430 54.839 124 51 2 14 132 48 171 1.12e-41 142
MS.gene000333.t1 AT2G24430 54.839 124 51 2 14 132 48 171 1.12e-41 142
MS.gene000333.t1 AT5G61430 53.237 139 55 4 2 132 36 172 1.59e-41 143
MS.gene000333.t1 AT5G39610 51.449 138 57 3 3 132 41 176 2.84e-41 140
MS.gene000333.t1 AT1G77450 50.980 153 55 5 2 138 30 178 3.34e-41 140
MS.gene000333.t1 AT1G33280 53.719 121 48 2 13 127 39 157 3.91e-41 141
MS.gene000333.t1 AT3G04070 50.318 157 46 4 2 126 30 186 5.64e-41 142
MS.gene000333.t1 AT4G10350 49.367 158 64 5 13 161 40 190 6.57e-41 141
MS.gene000333.t1 AT1G12260 49.275 138 61 4 2 132 27 162 4.46e-40 139
MS.gene000333.t1 AT3G18400 42.784 194 94 6 2 190 25 206 6.46e-40 138
MS.gene000333.t1 AT1G12260 49.275 138 61 4 2 132 27 162 1.06e-39 139
MS.gene000333.t1 AT4G27410 44.560 193 91 7 2 187 34 217 1.42e-39 137
MS.gene000333.t1 AT1G65910 42.458 179 87 5 2 170 26 198 1.85e-39 142
MS.gene000333.t1 AT5G17260 50.000 140 59 3 2 132 26 163 2.54e-39 140
MS.gene000333.t1 AT1G62700 49.664 149 64 5 2 141 27 173 3.38e-39 138
MS.gene000333.t1 AT1G62700 49.664 149 64 5 2 141 27 173 3.38e-39 138
MS.gene000333.t1 AT1G76420 49.265 136 63 3 3 133 43 177 3.95e-39 136
MS.gene000333.t1 AT1G33060 53.175 126 49 3 9 126 51 174 4.19e-39 141
MS.gene000333.t1 AT1G33060 53.175 126 49 3 9 126 51 174 4.43e-39 141
MS.gene000333.t1 AT4G35580 44.910 167 72 5 13 161 40 204 4.61e-39 140
MS.gene000333.t1 AT1G54330 54.962 131 50 3 2 126 26 153 4.88e-39 135
MS.gene000333.t1 AT4G35580 44.910 167 72 5 13 161 40 204 5.06e-39 140
MS.gene000333.t1 AT4G35580 44.910 167 72 5 13 161 40 204 5.16e-39 140
MS.gene000333.t1 AT5G62380 50.000 136 56 5 1 127 25 157 6.75e-39 136
MS.gene000333.t1 AT5G62380 50.000 136 56 5 1 127 25 157 6.75e-39 136
MS.gene000333.t1 AT5G53950 49.254 134 60 2 1 126 36 169 7.28e-39 137
MS.gene000333.t1 AT3G03200 48.571 140 61 3 2 132 26 163 7.45e-39 139
MS.gene000333.t1 AT2G18060 49.296 142 62 5 2 135 29 168 2.28e-38 135
MS.gene000333.t1 AT2G18060 49.296 142 62 5 2 135 29 168 2.28e-38 135
MS.gene000333.t1 AT1G71930 48.485 132 59 3 2 126 29 158 3.15e-38 134
MS.gene000333.t1 AT1G71930 48.485 132 59 3 2 126 29 158 3.15e-38 134
MS.gene000333.t1 AT3G15170 48.507 134 61 3 1 126 39 172 4.04e-38 133
MS.gene000333.t1 AT3G12977 51.095 137 57 5 2 131 39 172 4.87e-38 132
MS.gene000333.t1 AT3G04060 52.273 132 54 4 3 126 41 171 7.90e-38 133
MS.gene000333.t1 AT4G36160 48.252 143 63 5 2 135 30 170 8.20e-38 134
MS.gene000333.t1 AT4G36160 48.252 143 63 5 2 135 30 170 8.20e-38 134
MS.gene000333.t1 AT4G36160 48.252 143 63 5 2 135 34 174 8.63e-38 134
MS.gene000333.t1 AT1G52880 51.773 141 52 3 2 126 37 177 9.93e-38 132
MS.gene000333.t1 AT5G66300 51.111 135 54 5 2 127 32 163 1.03e-37 132
MS.gene000333.t1 AT5G18270 50.758 132 56 3 3 126 42 172 1.18e-37 132
MS.gene000333.t1 AT1G01720 41.885 191 93 5 2 182 27 209 1.21e-37 131
MS.gene000333.t1 AT5G18270 50.758 132 56 3 3 126 42 172 2.19e-37 132
MS.gene000333.t1 AT5G04410 43.820 178 81 5 2 169 29 197 6.06e-37 134
MS.gene000333.t1 AT5G46590 47.761 134 60 3 2 126 26 158 7.96e-37 129
MS.gene000333.t1 AT4G27410 40.952 210 91 7 2 187 34 234 1.09e-36 130
MS.gene000333.t1 AT4G10350 49.624 133 57 3 32 161 18 143 1.61e-36 129
MS.gene000333.t1 AT3G10500 46.980 149 65 4 2 140 29 173 1.81e-36 133
MS.gene000333.t1 AT3G17730 46.617 133 61 3 2 126 26 156 1.91e-36 127
MS.gene000333.t1 AT1G79580 48.485 132 61 2 2 127 37 167 2.38e-36 130
MS.gene000333.t1 AT1G79580 48.485 132 61 2 2 127 37 167 2.38e-36 130
MS.gene000333.t1 AT1G79580 48.485 132 61 2 2 127 37 167 2.38e-36 130
MS.gene000333.t1 AT1G79580 48.485 132 61 2 2 127 37 167 2.38e-36 130
MS.gene000333.t1 AT1G79580 48.485 132 61 2 2 127 37 167 2.38e-36 130
MS.gene000333.t1 AT1G52890 48.905 137 62 3 2 132 34 168 2.68e-36 129
MS.gene000333.t1 AT5G63790 43.787 169 76 4 2 159 70 230 3.18e-36 128
MS.gene000333.t1 AT5G63790 43.787 169 76 4 2 159 80 240 3.57e-36 129
MS.gene000333.t1 AT3G10480 47.887 142 63 3 2 134 47 186 5.88e-36 130
MS.gene000333.t1 AT5G08790 44.379 169 80 4 2 159 27 192 6.58e-36 127
MS.gene000333.t1 AT1G56010 46.565 131 59 3 10 131 48 176 8.68e-36 127
MS.gene000333.t1 AT4G28530 50.847 118 54 2 14 128 58 174 8.95e-36 128
MS.gene000333.t1 AT3G10490 47.183 142 64 3 2 134 47 186 1.13e-35 125
MS.gene000333.t1 AT3G29035 49.275 138 60 3 3 132 45 180 2.00e-35 126
MS.gene000333.t1 AT3G15500 48.551 138 63 3 2 133 34 169 2.83e-35 126
MS.gene000333.t1 AT4G17980 45.185 135 64 2 2 126 26 160 4.53e-35 124
MS.gene000333.t1 AT3G10480 47.518 141 64 3 2 134 47 185 5.42e-35 128
MS.gene000333.t1 AT5G61430 56.604 106 39 3 32 132 6 109 5.92e-35 124
MS.gene000333.t1 AT4G17980 45.185 135 64 2 2 126 26 160 7.55e-35 124
MS.gene000333.t1 AT3G10490 47.183 142 64 3 2 134 47 186 1.89e-34 126
MS.gene000333.t1 AT2G46770 40.884 181 72 6 2 149 36 214 2.07e-34 125
MS.gene000333.t1 AT5G39820 36.585 205 93 6 2 174 40 239 1.30e-33 122
MS.gene000333.t1 AT1G32770 43.448 145 61 4 2 127 36 178 1.73e-33 122
MS.gene000333.t1 AT3G61910 41.279 172 74 7 2 149 31 199 1.82e-33 122
MS.gene000333.t1 AT5G46590 46.281 121 59 2 2 117 26 145 3.15e-33 120
MS.gene000333.t1 AT3G12977 55.340 103 40 3 33 131 19 119 1.67e-32 116
MS.gene000333.t1 AT5G24590 46.043 139 56 5 13 137 44 177 4.43e-32 120
MS.gene000333.t1 AT3G49530 41.071 168 74 6 14 173 45 195 6.34e-32 119
MS.gene000333.t1 AT3G49530 41.071 168 74 6 14 173 45 195 7.00e-32 120
MS.gene000333.t1 AT3G12910 46.154 130 52 4 13 124 54 183 9.21e-32 116
MS.gene000333.t1 AT3G10480 38.857 175 63 3 2 134 47 219 2.07e-31 119
MS.gene000333.t1 AT2G17040 47.500 120 57 3 11 126 35 152 2.41e-31 115
MS.gene000333.t1 AT1G26870 42.857 140 65 3 2 126 36 175 2.93e-31 117
MS.gene000333.t1 AT1G34190 44.966 149 68 5 2 140 36 180 3.09e-31 119
MS.gene000333.t1 AT1G32510 39.247 186 86 6 9 168 33 217 3.20e-31 115
MS.gene000333.t1 AT1G56010 50.980 102 42 2 36 131 10 109 4.76e-31 114
MS.gene000333.t1 AT5G09330 40.476 168 86 4 2 159 26 189 8.00e-31 117
MS.gene000333.t1 AT5G09330 40.476 168 86 4 2 159 26 189 8.00e-31 117
MS.gene000333.t1 AT5G09330 40.476 168 86 4 2 159 26 189 8.00e-31 117
MS.gene000333.t1 AT5G09330 40.476 168 86 4 2 159 26 189 8.00e-31 117
MS.gene000333.t1 AT5G09330 40.476 168 86 4 2 159 26 189 8.00e-31 117
MS.gene000333.t1 AT2G02450 40.741 162 84 5 2 159 71 224 1.87e-30 114
MS.gene000333.t1 AT2G02450 40.741 162 84 5 2 159 71 224 2.63e-30 115
MS.gene000333.t1 AT2G43000 44.604 139 67 5 2 133 38 173 7.50e-30 111
MS.gene000333.t1 AT1G34180 43.243 148 72 4 2 140 36 180 9.51e-30 114
MS.gene000333.t1 AT1G34180 43.243 148 72 4 2 140 36 180 2.43e-29 114
MS.gene000333.t1 AT5G64060 40.940 149 74 4 2 140 26 170 2.70e-29 111
MS.gene000333.t1 AT1G34180 40.000 160 72 4 2 140 36 192 5.24e-29 112
MS.gene000333.t1 AT1G34180 40.000 160 72 4 2 140 36 192 1.04e-28 112
MS.gene000333.t1 AT5G22290 35.366 164 97 3 2 161 41 199 1.82e-28 108
MS.gene000333.t1 AT3G44290 34.409 186 109 4 2 183 34 210 3.61e-27 103
MS.gene000333.t1 AT2G27300 42.735 117 57 3 11 123 43 153 8.78e-27 104
MS.gene000333.t1 AT3G44290 34.409 186 109 4 2 183 34 210 3.11e-26 102
MS.gene000333.t1 AT1G32870 41.606 137 66 5 14 140 42 174 6.19e-23 95.5
MS.gene000333.t1 AT1G32870 41.606 137 66 5 14 140 42 174 6.29e-23 95.5
MS.gene000333.t1 AT1G32870 41.606 137 66 5 14 140 78 210 7.87e-23 95.5
MS.gene000333.t1 AT1G02230 41.667 120 60 5 13 126 36 151 1.30e-22 93.6
MS.gene000333.t1 AT2G18060 53.086 81 34 3 57 135 2 80 2.48e-22 91.3
MS.gene000333.t1 AT1G02250 42.500 120 59 4 13 126 36 151 4.66e-22 92.0
MS.gene000333.t1 AT3G10490 50.575 87 37 2 52 134 2 86 5.71e-22 91.7
MS.gene000333.t1 AT3G10490 50.575 87 37 2 52 134 2 86 5.71e-22 91.7
MS.gene000333.t1 AT5G04395 39.344 122 57 2 2 106 48 169 1.61e-21 87.4
MS.gene000333.t1 AT4G01550 36.620 142 73 5 14 148 37 168 5.63e-21 89.7
MS.gene000333.t1 AT4G01540 44.037 109 54 4 34 141 63 165 2.14e-20 87.8
MS.gene000333.t1 AT4G01540 41.593 113 61 3 34 145 63 171 2.49e-20 87.8
MS.gene000333.t1 AT4G01540 41.593 113 61 3 34 145 63 171 2.52e-20 87.4
MS.gene000333.t1 AT4G01520 40.708 113 62 3 34 145 63 171 2.57e-20 86.7
MS.gene000333.t1 AT4G01540 41.593 113 61 3 34 145 63 171 2.89e-20 87.8
MS.gene000333.t1 AT3G44350 38.583 127 64 4 12 126 36 160 3.76e-20 85.1
MS.gene000333.t1 AT2G43000 47.872 94 42 4 44 133 5 95 6.11e-20 83.6
MS.gene000333.t1 AT5G64530 34.507 142 63 4 2 124 23 153 9.21e-20 82.8
MS.gene000333.t1 AT5G22380 37.302 126 64 4 13 125 38 161 1.25e-19 83.6
MS.gene000333.t1 AT3G04420 38.655 119 64 4 13 126 36 150 8.41e-19 82.0
MS.gene000333.t1 AT3G04420 38.655 119 64 4 13 126 36 150 8.91e-19 82.8
MS.gene000333.t1 AT5G64530 39.252 107 52 3 2 106 23 118 9.50e-19 79.3
MS.gene000333.t1 AT3G44350 40.741 108 54 3 12 111 36 141 4.34e-18 77.8
MS.gene000333.t1 AT5G14000 34.615 130 79 4 3 129 36 162 1.56e-16 74.7
MS.gene000333.t1 AT1G02220 37.008 127 60 6 14 132 37 151 2.93e-16 76.3
MS.gene000333.t1 AT5G22290 37.500 104 60 2 58 161 2 100 5.94e-16 73.6
MS.gene000333.t1 AT5G14000 36.134 119 71 3 3 118 36 152 8.33e-16 71.6
MS.gene000333.t1 AT5G50820 36.283 113 65 3 2 112 37 144 2.15e-15 71.2
MS.gene000333.t1 AT4G28530 41.250 80 44 1 14 90 58 137 7.21e-14 68.9
MS.gene000333.t1 AT1G01010 33.333 126 65 5 14 126 37 156 1.42e-12 65.5
MS.gene000333.t1 AT3G55210 37.500 96 55 3 39 133 85 176 1.06e-11 62.4

Find 44 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCATCCTCATCCTCTTT+TGG 0.172089 7.1:+88253608 MS.gene000333:CDS
TCGGTTCCCATTTGGGTATT+TGG 0.189837 7.1:-88253021 None:intergenic
CTGTTAGATCGGTTCCCATT+TGG 0.268180 7.1:-88253029 None:intergenic
TGTTAGATCGGTTCCCATTT+GGG 0.328133 7.1:-88253028 None:intergenic
GAGCTACAAACTCTGGTTAC+TGG 0.339051 7.1:+88253051 MS.gene000333:CDS
ATCTTTGCAAGTCTGATCCT+TGG 0.370348 7.1:+88252776 MS.gene000333:CDS
CCAAGCAGTTGCAGCAACTT+TGG 0.391601 7.1:+88253413 MS.gene000333:CDS
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 7.1:+88252777 MS.gene000333:CDS
CAGTGGAATCACAAATGAAT+TGG 0.418146 7.1:+88253553 MS.gene000333:CDS
TTAAGCATTATTTCCAAAAG+AGG 0.440986 7.1:-88253621 None:intergenic
AAAGAAGCCAAATACCCAAA+TGG 0.451382 7.1:+88253014 MS.gene000333:CDS
TCTGGTTACTGGAAAGCAAC+TGG 0.454286 7.1:+88253062 MS.gene000333:CDS
TCAAAGAGTCATGAAGTTGT+TGG 0.455914 7.1:+88253107 MS.gene000333:CDS
GACTTGCAAAGATCAACTTC+AGG 0.465462 7.1:-88252766 None:intergenic
AAGATCAACTTCAGGAATGA+TGG 0.468508 7.1:-88252758 None:intergenic
AAGAAGCCAAATACCCAAAT+GGG 0.481949 7.1:+88253015 MS.gene000333:CDS
TTCCTCTCACTCCAACCCCT+TGG 0.484311 7.1:+88253214 MS.gene000333:CDS
CCAAAGTTGCTGCAACTGCT+TGG 0.489565 7.1:-88253413 None:intergenic
TTTGTGATTCCACTGCTAGC+TGG 0.494748 7.1:-88253545 None:intergenic
ATTATTTCCAAAAGAGGATG+AGG 0.507684 7.1:-88253615 None:intergenic
GAATGATGGAAGCAGGTAAA+GGG 0.510410 7.1:-88252744 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.514880 7.1:-88253208 None:intergenic
ACTGCTAGCTGGTGAGGAGG+AGG 0.524725 7.1:-88253534 None:intergenic
AGTTTGTAGCTCTGTTAGAT+CGG 0.532621 7.1:-88253040 None:intergenic
GGAATGATGGAAGCAGGTAA+AGG 0.533367 7.1:-88252745 None:intergenic
ACTTCAGGAATGATGGAAGC+AGG 0.542259 7.1:-88252751 None:intergenic
GACCAAGGGGTTGGAGTGAG+AGG 0.548262 7.1:-88253216 None:intergenic
CTCATGGTTCAAGAACTGAT+TGG 0.548704 7.1:+88253168 MS.gene000333:CDS
TTTGTCGCATATTTCTGAAG+AGG 0.550659 7.1:+88253354 MS.gene000333:CDS
AGACTGACTGACCAAGGGGT+TGG 0.552341 7.1:-88253225 None:intergenic
TCTAACAGAGCTACAAACTC+TGG 0.560803 7.1:+88253044 MS.gene000333:CDS
TTTCCAAAAGAGGATGAGGA+TGG 0.565330 7.1:-88253611 None:intergenic
TCTGATCCTTGGGATTTACC+TGG 0.570788 7.1:+88252787 MS.gene000333:CDS
GATTCCACTGCTAGCTGGTG+AGG 0.572585 7.1:-88253540 None:intergenic
TCCTCCTCACCAGCTAGCAG+TGG 0.575561 7.1:+88253536 MS.gene000333:CDS
CGCATATTTCTGAAGAGGAG+AGG 0.580940 7.1:+88253359 MS.gene000333:CDS
TACAGAGGCAAACCACCTCA+TGG 0.581454 7.1:+88253152 MS.gene000333:CDS
TCCACTGCTAGCTGGTGAGG+AGG 0.609090 7.1:-88253537 None:intergenic
TACATACCAGGTAAATCCCA+AGG 0.614952 7.1:-88252793 None:intergenic
TCAGTTCTTGAACCATGAGG+TGG 0.615010 7.1:-88253164 None:intergenic
TAGGTGATTTGGAACAAGAG+AGG 0.615569 7.1:+88252976 MS.gene000333:intron
CAGTTGCAGCAACTTTGGTG+AGG 0.652051 7.1:+88253418 MS.gene000333:CDS
ATATTTCTGAAGAGGAGAGG+TGG 0.674268 7.1:+88253362 MS.gene000333:CDS
CAATCAGTTCTTGAACCATG+AGG 0.707588 7.1:-88253167 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATTAATATTAATATGAA+TGG + chr7.1:88253296-88253315 MS.gene000333:intron 10.0%
!! AATATTAATATGAATGGAAT+TGG + chr7.1:88253302-88253321 MS.gene000333:intron 15.0%
!! ATATTAATATGAATGGAATT+GGG + chr7.1:88253303-88253322 MS.gene000333:intron 15.0%
!! TTATAAATGAAGAAAAGAAA+AGG - chr7.1:88252819-88252838 None:intergenic 15.0%
!!! TGAATTTGTTTGTAATTTAA+AGG + chr7.1:88253261-88253280 MS.gene000333:intron 15.0%
!! ATTTGTTTGTAATTTAAAGG+TGG + chr7.1:88253264-88253283 MS.gene000333:intron 20.0%
!!! GGATTAATTCTTTTTCTTTT+AGG + chr7.1:88252957-88252976 MS.gene000333:intron 20.0%
! TTAAGCATTATTTCCAAAAG+AGG - chr7.1:88253624-88253643 None:intergenic 25.0%
!! CTTTTTGCAGAATGAAAATT+GGG + chr7.1:88253328-88253347 MS.gene000333:intron 25.0%
!! TCTTTTTGCAGAATGAAAAT+TGG + chr7.1:88253327-88253346 MS.gene000333:intron 25.0%
!!! TCTTTTTCTTTTAGGTGATT+TGG + chr7.1:88252965-88252984 MS.gene000333:intron 25.0%
ATTATTTCCAAAAGAGGATG+AGG - chr7.1:88253618-88253637 None:intergenic 30.0%
! AAATTCAAGTTCAAAAGTGG+TGG + chr7.1:88253466-88253485 MS.gene000333:intron 30.0%
! CTCAAATTCAAGTTCAAAAG+TGG + chr7.1:88253463-88253482 MS.gene000333:intron 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG + chr7.1:88253137-88253156 MS.gene000333:CDS 30.0%
AAAGAAGCCAAATACCCAAA+TGG + chr7.1:88253014-88253033 MS.gene000333:CDS 35.0%
AAGAAGCCAAATACCCAAAT+GGG + chr7.1:88253015-88253034 MS.gene000333:CDS 35.0%
AAGATCAACTTCAGGAATGA+TGG - chr7.1:88252761-88252780 None:intergenic 35.0%
ACAACAAGTTCTTCATCAGT+TGG - chr7.1:88252694-88252713 None:intergenic 35.0%
CAGTGGAATCACAAATGAAT+TGG + chr7.1:88253553-88253572 MS.gene000333:CDS 35.0%
TAGTACAAGTCATCATGTTC+CGG - chr7.1:88252907-88252926 None:intergenic 35.0%
TCAAAGAGTCATGAAGTTGT+TGG + chr7.1:88253107-88253126 MS.gene000333:CDS 35.0%
TGTTCAATACTTGAAGCGTA+AGG + chr7.1:88252711-88252730 MS.gene000333:intron 35.0%
TTTCTATGATTTCTTGGCAC+AGG + chr7.1:88253490-88253509 MS.gene000333:intron 35.0%
! AGTTTGTAGCTCTGTTAGAT+CGG - chr7.1:88253043-88253062 None:intergenic 35.0%
! GAAAAGAAAAGGTACATACC+AGG - chr7.1:88252808-88252827 None:intergenic 35.0%
! GGTGGTTTTCTATGATTTCT+TGG + chr7.1:88253484-88253503 MS.gene000333:intron 35.0%
! TTTGTCGCATATTTCTGAAG+AGG + chr7.1:88253354-88253373 MS.gene000333:CDS 35.0%
AAAGAAAGACTGACTGACCA+AGG - chr7.1:88253234-88253253 None:intergenic 40.0%
AAGAAAGACTGACTGACCAA+GGG - chr7.1:88253233-88253252 None:intergenic 40.0%
AGTACAAGTCATCATGTTCC+GGG - chr7.1:88252906-88252925 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG + chr7.1:88252776-88252795 MS.gene000333:CDS 40.0%
CAAGTTCTTCATCAGTTGGA+TGG - chr7.1:88252690-88252709 None:intergenic 40.0%
CAATCAGTTCTTGAACCATG+AGG - chr7.1:88253170-88253189 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG + chr7.1:88252936-88252955 MS.gene000333:intron 40.0%
CTCATGGTTCAAGAACTGAT+TGG + chr7.1:88253168-88253187 MS.gene000333:CDS 40.0%
CTTCATCAGTTGGATGGAAA+CGG - chr7.1:88252684-88252703 None:intergenic 40.0%
GACTTGCAAAGATCAACTTC+AGG - chr7.1:88252769-88252788 None:intergenic 40.0%
TACATACCAGGTAAATCCCA+AGG - chr7.1:88252796-88252815 None:intergenic 40.0%
TCTAACAGAGCTACAAACTC+TGG + chr7.1:88253044-88253063 MS.gene000333:CDS 40.0%
TCTTTGCAAGTCTGATCCTT+GGG + chr7.1:88252777-88252796 MS.gene000333:CDS 40.0%
TTTCCAAAAGAGGATGAGGA+TGG - chr7.1:88253614-88253633 None:intergenic 40.0%
! ATATTTCTGAAGAGGAGAGG+TGG + chr7.1:88253362-88253381 MS.gene000333:CDS 40.0%
! GAATGATGGAAGCAGGTAAA+GGG - chr7.1:88252747-88252766 None:intergenic 40.0%
! TAGGTGATTTGGAACAAGAG+AGG + chr7.1:88252976-88252995 MS.gene000333:intron 40.0%
! TGTTAGATCGGTTCCCATTT+GGG - chr7.1:88253031-88253050 None:intergenic 40.0%
AGAAAGACTGACTGACCAAG+GGG - chr7.1:88253232-88253251 None:intergenic 45.0%
CACAGATATCGGACACAACA+TGG + chr7.1:88252861-88252880 MS.gene000333:intron 45.0%
CGAAGCACAGACACAGATAT+CGG + chr7.1:88252850-88252869 MS.gene000333:intron 45.0%
GAGCTACAAACTCTGGTTAC+TGG + chr7.1:88253051-88253070 MS.gene000333:CDS 45.0%
TCAGTTCTTGAACCATGAGG+TGG - chr7.1:88253167-88253186 None:intergenic 45.0%
TCGGTTCCCATTTGGGTATT+TGG - chr7.1:88253024-88253043 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG + chr7.1:88252787-88252806 MS.gene000333:CDS 45.0%
TCTGGTTACTGGAAAGCAAC+TGG + chr7.1:88253062-88253081 MS.gene000333:CDS 45.0%
TTTGTGATTCCACTGCTAGC+TGG - chr7.1:88253548-88253567 None:intergenic 45.0%
! ACTTCAGGAATGATGGAAGC+AGG - chr7.1:88252754-88252773 None:intergenic 45.0%
! AGGAGAGGTGGTGCTAAAAA+TGG + chr7.1:88253374-88253393 MS.gene000333:CDS 45.0%
! AGGTGGTGCTAAAAATGGAG+AGG + chr7.1:88253379-88253398 MS.gene000333:CDS 45.0%
! CGCATATTTCTGAAGAGGAG+AGG + chr7.1:88253359-88253378 MS.gene000333:CDS 45.0%
! CTGTTAGATCGGTTCCCATT+TGG - chr7.1:88253032-88253051 None:intergenic 45.0%
! CTTCCATCCTCATCCTCTTT+TGG + chr7.1:88253608-88253627 MS.gene000333:CDS 45.0%
! GGAATGATGGAAGCAGGTAA+AGG - chr7.1:88252748-88252767 None:intergenic 45.0%
CAGTTGCAGCAACTTTGGTG+AGG + chr7.1:88253418-88253437 MS.gene000333:CDS 50.0%
CCAAAGTTGCTGCAACTGCT+TGG - chr7.1:88253416-88253435 None:intergenic 50.0%
CCAAGCAGTTGCAGCAACTT+TGG + chr7.1:88253413-88253432 MS.gene000333:CDS 50.0%
GTTGGATGGAAACGGAAACC+TGG - chr7.1:88252676-88252695 None:intergenic 50.0%
TACAGAGGCAAACCACCTCA+TGG + chr7.1:88253152-88253171 MS.gene000333:CDS 50.0%
AGACTGACTGACCAAGGGGT+TGG - chr7.1:88253228-88253247 None:intergenic 55.0%
CACTGACACGTTCAGACACC+CGG + chr7.1:88252885-88252904 MS.gene000333:intron 55.0%
GATTCCACTGCTAGCTGGTG+AGG - chr7.1:88253543-88253562 None:intergenic 55.0%
GGATGGAAACGGAAACCTGG+TGG - chr7.1:88252673-88252692 None:intergenic 55.0%
GGTGAAGTGAGATTGCCACC+AGG + chr7.1:88252655-88252674 MS.gene000333:intron 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG - chr7.1:88253211-88253230 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG + chr7.1:88253214-88253233 MS.gene000333:CDS 55.0%
ACTGCTAGCTGGTGAGGAGG+AGG - chr7.1:88253537-88253556 None:intergenic 60.0%
GACCAAGGGGTTGGAGTGAG+AGG - chr7.1:88253219-88253238 None:intergenic 60.0%
TCCACTGCTAGCTGGTGAGG+AGG - chr7.1:88253540-88253559 None:intergenic 60.0%
TCCTCCTCACCAGCTAGCAG+TGG + chr7.1:88253536-88253555 MS.gene000333:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 88252653 88253643 88252653 ID=MS.gene000333
chr7.1 mRNA 88252653 88253643 88252653 ID=MS.gene000333.t1;Parent=MS.gene000333
chr7.1 exon 88252653 88252655 88252653 ID=MS.gene000333.t1.exon1;Parent=MS.gene000333.t1
chr7.1 CDS 88252653 88252655 88252653 ID=cds.MS.gene000333.t1;Parent=MS.gene000333.t1
chr7.1 exon 88252727 88252808 88252727 ID=MS.gene000333.t1.exon2;Parent=MS.gene000333.t1
chr7.1 CDS 88252727 88252808 88252727 ID=cds.MS.gene000333.t1;Parent=MS.gene000333.t1
chr7.1 exon 88252979 88253235 88252979 ID=MS.gene000333.t1.exon3;Parent=MS.gene000333.t1
chr7.1 CDS 88252979 88253235 88252979 ID=cds.MS.gene000333.t1;Parent=MS.gene000333.t1
chr7.1 exon 88253338 88253439 88253338 ID=MS.gene000333.t1.exon4;Parent=MS.gene000333.t1
chr7.1 CDS 88253338 88253439 88253338 ID=cds.MS.gene000333.t1;Parent=MS.gene000333.t1
chr7.1 exon 88253512 88253643 88253512 ID=MS.gene000333.t1.exon5;Parent=MS.gene000333.t1
chr7.1 CDS 88253512 88253643 88253512 ID=cds.MS.gene000333.t1;Parent=MS.gene000333.t1
Gene Sequence

>MS.gene000333

ATGGTGAAGTGAGATTGCCACCAGGTTTCCGTTTCCATCCAACTGATGAAGAACTTGTTGTTCAATACTTGAAGCGTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTATGTACCTTTTCTTTTCTTCATTTATAATCATAACTTAACGAAGCACAGACACAGATATCGGACACAACATGGACACTGACACGTTCAGACACCCGGAACATGATGACTTGTACTACTACTACTACTACTGCAAACAATGTCATGTGGATTAATTCTTTTTCTTTTAGGTGATTTGGAACAAGAGAGGTACTTTTTCAGTACTAAAGAAGCCAAATACCCAAATGGGAACCGATCTAACAGAGCTACAAACTCTGGTTACTGGAAAGCAACTGGTTTAGACAAACAAATCATGAATTCAAAGAGTCATGAAGTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGGTCAGTCAGTCTTTCTTTCTTTCTCTGAATTTGTTTGTAATTTAAAGGTGGTGTTGACTTTGAATTAATATTAATATGAATGGAATTGGGTTCTTTTTGCAGAATGAAAATTGGGTTCTTTGTCGCATATTTCTGAAGAGGAGAGGTGGTGCTAAAAATGGAGAGGAGAGTGTGAAGCCAAGCAGTTGCAGCAACTTTGGTGAGGTGAAGAAGAACTCAGCTTCAAGCTCAAATTCAAGTTCAAAAGTGGTGGTTTTCTATGATTTCTTGGCACAGGAGAAGAACAATACTGATGCATCCTCCTCCTCACCAGCTAGCAGTGGAATCACAAATGAATTGGATGAACATGAAAATGAAGACAGCAGTAACTCACTTCCATCCTCATCCTCTTTTGGAAATAATGCTTAA
Protein sequence

>MS.gene000333.t1

MRKVFSFPLPASIIPEVDLCKSDPWDLPGDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIMNSKSHEVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVLCRIFLKRRGGAKNGEESVKPSSCSNFGEEKNNTDASSSSPASSGITNELDEHENEDSSNSLPSSSSFGNNA