Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000381.t1 | TKY57836.1 | 35.7 | 255 | 138 | 4 | 3 | 232 | 8 | 261 | 7.60E-32 | 147.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000381.t1 | Q9FFI5 | 29.3 | 157 | 72 | 7 | 4 | 128 | 6 | 155 | 1.7e-08 | 61.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000381.t1 | A0A1S3UD91 | 32.6 | 273 | 139 | 6 | 2 | 232 | 7 | 276 | 3.8e-25 | 124.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene000381.t1 | TF | NAC |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000381.t1 | MTR_1g047060 | 64.706 | 85 | 30 | 0 | 94 | 178 | 3 | 87 | 1.88e-31 | 111 |
MS.gene000381.t1 | MTR_6g084430 | 31.169 | 154 | 72 | 6 | 2 | 128 | 3 | 149 | 3.15e-12 | 65.1 |
MS.gene000381.t1 | MTR_1g069805 | 31.973 | 147 | 76 | 6 | 4 | 128 | 10 | 154 | 7.95e-12 | 63.5 |
MS.gene000381.t1 | MTR_7g097090 | 32.667 | 150 | 71 | 7 | 4 | 128 | 10 | 154 | 1.02e-11 | 63.5 |
MS.gene000381.t1 | MTR_3g064580 | 30.128 | 156 | 72 | 6 | 4 | 128 | 6 | 155 | 1.16e-11 | 64.3 |
MS.gene000381.t1 | MTR_1g008740 | 30.519 | 154 | 77 | 6 | 2 | 128 | 25 | 175 | 1.64e-11 | 63.2 |
MS.gene000381.t1 | MTR_1g008740 | 30.519 | 154 | 77 | 6 | 2 | 128 | 11 | 161 | 1.95e-11 | 63.2 |
MS.gene000381.t1 | MTR_4g094302 | 27.097 | 155 | 77 | 6 | 4 | 129 | 11 | 158 | 3.18e-11 | 60.8 |
MS.gene000381.t1 | MTR_3g109340 | 29.677 | 155 | 76 | 5 | 2 | 128 | 20 | 169 | 4.45e-11 | 62.0 |
MS.gene000381.t1 | MTR_8g094580 | 31.013 | 158 | 70 | 7 | 4 | 129 | 7 | 157 | 4.80e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000381.t1 | AT2G24430 | 33.117 | 154 | 72 | 6 | 2 | 128 | 14 | 163 | 5.98e-14 | 70.1 |
MS.gene000381.t1 | AT2G24430 | 33.117 | 154 | 72 | 6 | 2 | 128 | 14 | 163 | 5.98e-14 | 70.1 |
MS.gene000381.t1 | AT2G27300 | 28.037 | 214 | 119 | 8 | 4 | 186 | 14 | 223 | 2.88e-12 | 65.5 |
MS.gene000381.t1 | AT1G54330 | 29.605 | 152 | 74 | 6 | 4 | 128 | 6 | 151 | 3.42e-11 | 62.0 |
Find 55 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAGCTTAAGCATGCACTTC+TGG | 0.248003 | 1.1:-30848559 | MS.gene000381:CDS |
CAATGGTTCTGAGCTAATTA+AGG | 0.256935 | 1.1:-30850016 | MS.gene000381:CDS |
GCTGGTGCTGGTGCTGCTGC+TGG | 0.339157 | 1.1:-30849456 | MS.gene000381:CDS |
GGAGCTGATAACGTGGTTCT+AGG | 0.360842 | 1.1:-30849826 | MS.gene000381:CDS |
CGTGTGTTTGACTGCCCACC+AGG | 0.412298 | 1.1:-30849579 | MS.gene000381:CDS |
GCTGGTGCTGCTGCTGGTGT+TGG | 0.415359 | 1.1:-30849450 | MS.gene000381:CDS |
AACACACGGCAACACACAAA+AGG | 0.418206 | 1.1:+30849594 | None:intergenic |
GTTGGTCCTGCTGTTGATGA+TGG | 0.422696 | 1.1:-30849432 | MS.gene000381:CDS |
AGGTGATGCATCGTATTTGC+AGG | 0.428163 | 1.1:-30849394 | MS.gene000381:intron |
GAAGAGGTTCAAAATTTCAA+TGG | 0.430022 | 1.1:-30850033 | MS.gene000381:CDS |
GGTACTGTAAGACAGGATAT+TGG | 0.432912 | 1.1:-30849882 | MS.gene000381:CDS |
TGGCGTTGGCTTCGTCCCTT+CGG | 0.444128 | 1.1:-30850097 | MS.gene000381:CDS |
TGATGTCACTCAGAAACCTA+TGG | 0.460864 | 1.1:-30849487 | MS.gene000381:CDS |
GCCTTCTTCAACATCCGTTA+AGG | 0.461031 | 1.1:+30849530 | None:intergenic |
CCTCCTCTGCTCATCAACTT+TGG | 0.480636 | 1.1:+30849903 | None:intergenic |
CAGAGGAGGTACTGTAAGAC+AGG | 0.483813 | 1.1:-30849889 | MS.gene000381:CDS |
GAATTGCTTCCACCTGGCGT+TGG | 0.493230 | 1.1:-30850111 | MS.gene000381:CDS |
ATGGATTTGAAAGGTGAGTT+CGG | 0.495119 | 1.1:-30849555 | MS.gene000381:CDS |
AAAATGGGTCATACTGGTAC+AGG | 0.496351 | 1.1:+30849986 | None:intergenic |
CCACATGGACGCTAGGACAC+CGG | 0.500540 | 1.1:-30848583 | MS.gene000381:CDS |
GATGTCACTCAGAAACCTAT+GGG | 0.511266 | 1.1:-30849486 | MS.gene000381:CDS |
GACAGGATATTGGATGCAGA+AGG | 0.514396 | 1.1:-30849872 | MS.gene000381:CDS |
AGGTGAGTTCGGAGCCTTAA+CGG | 0.523642 | 1.1:-30849544 | MS.gene000381:CDS |
AGTGCATGCTTAAGCTGCTC+CGG | 0.526169 | 1.1:+30848564 | None:intergenic |
GAAGGGACGAAGCCAACGCC+AGG | 0.531335 | 1.1:+30850099 | None:intergenic |
TGGACGCTGTCAAAACTAGC+TGG | 0.540827 | 1.1:-30849762 | MS.gene000381:CDS |
CACTCTTGCTAACAAGCCTC+AGG | 0.544263 | 1.1:-30849725 | MS.gene000381:intron |
GTTGAAGAAGGCGATGCTGC+TGG | 0.544550 | 1.1:-30849519 | MS.gene000381:CDS |
TCACCTTTCAAATCCATCCC+TGG | 0.550106 | 1.1:+30849561 | None:intergenic |
GCCTTAACGGATGTTGAAGA+AGG | 0.552951 | 1.1:-30849531 | MS.gene000381:CDS |
GCTATTCGAGACATTACCGT+TGG | 0.557631 | 1.1:-30849847 | MS.gene000381:CDS |
TTGTCTTCCACATGGACGCT+AGG | 0.559553 | 1.1:-30848590 | MS.gene000381:CDS |
GTTTGACTGCCCACCAGGGA+TGG | 0.561595 | 1.1:-30849574 | MS.gene000381:CDS |
TGGCAAGGTAGTGGCTAACA+AGG | 0.563537 | 1.1:+30850067 | None:intergenic |
GCACAACCATCATCAACAGC+AGG | 0.592957 | 1.1:+30849426 | None:intergenic |
GCAATGGAATTGCTTCCACC+TGG | 0.596598 | 1.1:-30850117 | MS.gene000381:CDS |
GGGACGAAGCCAACGCCAGG+TGG | 0.602159 | 1.1:+30850102 | None:intergenic |
CCACCAGGGATGGATTTGAA+AGG | 0.604333 | 1.1:-30849564 | MS.gene000381:CDS |
GATGGTTGTGCTGCTGAGCA+AGG | 0.608689 | 1.1:-30849414 | MS.gene000381:CDS |
CCAAAGTTGATGAGCAGAGG+AGG | 0.609229 | 1.1:-30849903 | MS.gene000381:CDS |
ACAGGATATTGGATGCAGAA+GGG | 0.612256 | 1.1:-30849871 | MS.gene000381:CDS |
CTATTTAGGAAATTCACCGA+TGG | 0.613156 | 1.1:-30849782 | MS.gene000381:CDS |
CTGCCAAAGTTGATGAGCAG+AGG | 0.624165 | 1.1:-30849906 | MS.gene000381:CDS |
AACCACGTTATCAGCTCCAA+CGG | 0.626095 | 1.1:+30849831 | None:intergenic |
CCTTTCAAATCCATCCCTGG+TGG | 0.628327 | 1.1:+30849564 | None:intergenic |
CTTTCAAATCCATCCCTGGT+GGG | 0.631727 | 1.1:+30849565 | None:intergenic |
TACCGTTGGAGCTGATAACG+TGG | 0.651576 | 1.1:-30849833 | MS.gene000381:CDS |
TGACTGTGTTGTCTTCCACA+TGG | 0.651853 | 1.1:-30848598 | MS.gene000381:CDS |
CTGGTGGGCAGTCAAACACA+CGG | 0.652222 | 1.1:+30849580 | None:intergenic |
CCGGTGTCCTAGCGTCCATG+TGG | 0.665425 | 1.1:+30848583 | None:intergenic |
TAACAAGGAGTTCATCCGAA+GGG | 0.665782 | 1.1:+30850082 | None:intergenic |
ATGTCACTCAGAAACCTATG+GGG | 0.683258 | 1.1:-30849485 | MS.gene000381:CDS |
GTGTGTTTGACTGCCCACCA+GGG | 0.701217 | 1.1:-30849578 | MS.gene000381:CDS |
CTAACAAGGAGTTCATCCGA+AGG | 0.706470 | 1.1:+30850081 | None:intergenic |
TGTCACTCAGAAACCTATGG+GGG | 0.731150 | 1.1:-30849484 | MS.gene000381:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAATTTATAAAAAAAAA+AGG | + | chr1.1:30849861-30849880 | None:intergenic | 0.0% |
!! | ATCAATATTAATTAATCTAT+TGG | - | chr1.1:30848980-30848999 | MS.gene000381:intron | 10.0% |
!! | TTAAAAAAATGGTTTAATTA+GGG | - | chr1.1:30849620-30849639 | MS.gene000381:intron | 10.0% |
!! | TTTAAAAAAATGGTTTAATT+AGG | - | chr1.1:30849619-30849638 | MS.gene000381:intron | 10.0% |
!!! | TTTTTGAAATTTTAAAGAAT+CGG | + | chr1.1:30849695-30849714 | None:intergenic | 10.0% |
!! | GATAAAATTTATCAAAACTT+TGG | - | chr1.1:30849510-30849529 | MS.gene000381:CDS | 15.0% |
!! | TTATATATAAATAATTGTGC+AGG | - | chr1.1:30849019-30849038 | MS.gene000381:intron | 15.0% |
!!! | GGAGTTTATTTTTAAAAAAA+TGG | - | chr1.1:30849609-30849628 | MS.gene000381:intron | 15.0% |
!! | AAATAATGATGAATTTGTCA+TGG | + | chr1.1:30849885-30849904 | None:intergenic | 20.0% |
!!! | AAAATAAACTCCGAATTTTT+TGG | + | chr1.1:30849601-30849620 | None:intergenic | 20.0% |
!!! | CAACTTTTCATTTCATTTTA+TGG | - | chr1.1:30849936-30849955 | MS.gene000381:intron | 20.0% |
! | ATATGTATTTGACTGCTATT+GGG | - | chr1.1:30849367-30849386 | MS.gene000381:intron | 25.0% |
! | TGATGAAATAACGAACAAAA+GGG | + | chr1.1:30848964-30848983 | None:intergenic | 25.0% |
! | TTGATGAAATAACGAACAAA+AGG | + | chr1.1:30848965-30848984 | None:intergenic | 25.0% |
!! | ATTTTATGGTAGAGATAAGA+AGG | - | chr1.1:30849950-30849969 | MS.gene000381:intron | 25.0% |
!! | TCTCTCTTCTTTTTCTATTT+AGG | - | chr1.1:30848842-30848861 | MS.gene000381:intron | 25.0% |
!!! | GTTTTGTTTTGATGTTTATC+AGG | - | chr1.1:30849998-30850017 | MS.gene000381:intron | 25.0% |
AACGACCACGATTTAAAAAT+TGG | + | chr1.1:30849460-30849479 | None:intergenic | 30.0% | |
AAGTAAGGCGCAATTAAAAT+GGG | + | chr1.1:30848670-30848689 | None:intergenic | 30.0% | |
ACATGTTACAATCACATGAA+TGG | + | chr1.1:30849732-30849751 | None:intergenic | 30.0% | |
CATATGTATTTGACTGCTAT+TGG | - | chr1.1:30849366-30849385 | MS.gene000381:intron | 30.0% | |
CATCAAAATCATTGATGTTG+TGG | + | chr1.1:30849428-30849447 | None:intergenic | 30.0% | |
GAAGAGGTTCAAAATTTCAA+TGG | - | chr1.1:30848605-30848624 | MS.gene000381:CDS | 30.0% | |
TTGGCTTCTTCCAAAAAATT+CGG | - | chr1.1:30849588-30849607 | MS.gene000381:CDS | 30.0% | |
! | AATTTTTAAATCGTGGTCGT+TGG | - | chr1.1:30849459-30849478 | MS.gene000381:CDS | 30.0% |
! | CTCATTAGTGTCAATTTTGT+GGG | - | chr1.1:30849560-30849579 | MS.gene000381:CDS | 30.0% |
! | TATGGCCAATTTTTAAATCG+TGG | - | chr1.1:30849452-30849471 | MS.gene000381:CDS | 30.0% |
! | TCTCATTAGTGTCAATTTTG+TGG | - | chr1.1:30849559-30849578 | MS.gene000381:CDS | 30.0% |
!! | CAATGATTTTGATGTCTGTA+TGG | - | chr1.1:30849434-30849453 | MS.gene000381:CDS | 30.0% |
!!! | AACCTCTTCATTGTTTTTGT+TGG | + | chr1.1:30848594-30848613 | None:intergenic | 30.0% |
AAAATGATGCGCTTGAATGT+GGG | - | chr1.1:30849402-30849421 | MS.gene000381:CDS | 35.0% | |
ATGGATTTGAAAGGTGAGTT+CGG | - | chr1.1:30849083-30849102 | MS.gene000381:intron | 35.0% | |
CTATTTAGGAAATTCACCGA+TGG | - | chr1.1:30848856-30848875 | MS.gene000381:intron | 35.0% | |
GAAATAACGAACAAAAGGGA+AGG | + | chr1.1:30848960-30848979 | None:intergenic | 35.0% | |
GAAGTAAGGCGCAATTAAAA+TGG | + | chr1.1:30848671-30848690 | None:intergenic | 35.0% | |
GCAATTAAAATGGGTCATAC+TGG | + | chr1.1:30848661-30848680 | None:intergenic | 35.0% | |
TAAAATGATGCGCTTGAATG+TGG | - | chr1.1:30849401-30849420 | MS.gene000381:CDS | 35.0% | |
TGAAGCAGTAAAATTCCCTT+GGG | + | chr1.1:30848712-30848731 | None:intergenic | 35.0% | |
TGCCAACAAAAACAATGAAG+AGG | - | chr1.1:30848589-30848608 | MS.gene000381:CDS | 35.0% | |
TTTCCCAAATACAATACCTG+AGG | + | chr1.1:30848932-30848951 | None:intergenic | 35.0% | |
! | AAGCCTCAGGTATTGTATTT+GGG | - | chr1.1:30848926-30848945 | MS.gene000381:intron | 35.0% |
! | GTCAATTTTGTGGGATAACT+TGG | - | chr1.1:30849569-30849588 | MS.gene000381:CDS | 35.0% |
!! | CAATGGTTCTGAGCTAATTA+AGG | - | chr1.1:30848622-30848641 | MS.gene000381:intron | 35.0% |
!!! | CTTCATTGTTTTTGTTGGCA+AGG | + | chr1.1:30848589-30848608 | None:intergenic | 35.0% |
AAAATGGGTCATACTGGTAC+AGG | + | chr1.1:30848655-30848674 | None:intergenic | 40.0% | |
ACAGGATATTGGATGCAGAA+GGG | - | chr1.1:30848767-30848786 | MS.gene000381:intron | 40.0% | |
AGGACGTGATTTGAAGAATC+TGG | + | chr1.1:30849841-30849860 | None:intergenic | 40.0% | |
AGTAAAATTCCCTTGGGTGA+CGG | + | chr1.1:30848706-30848725 | None:intergenic | 40.0% | |
ATGTCACTCAGAAACCTATG+GGG | - | chr1.1:30849153-30849172 | MS.gene000381:intron | 40.0% | |
GATGTCACTCAGAAACCTAT+GGG | - | chr1.1:30849152-30849171 | MS.gene000381:intron | 40.0% | |
GGAAGGAAAAGGATGAAGTA+AGG | + | chr1.1:30848685-30848704 | None:intergenic | 40.0% | |
GGTACTGTAAGACAGGATAT+TGG | - | chr1.1:30848756-30848775 | MS.gene000381:intron | 40.0% | |
GTGAAGCAGTAAAATTCCCT+TGG | + | chr1.1:30848713-30848732 | None:intergenic | 40.0% | |
TAACAAGGAGTTCATCCGAA+GGG | + | chr1.1:30848559-30848578 | None:intergenic | 40.0% | |
TGATGTCACTCAGAAACCTA+TGG | - | chr1.1:30849151-30849170 | MS.gene000381:intron | 40.0% | |
! | CAAGCCTCAGGTATTGTATT+TGG | - | chr1.1:30848925-30848944 | MS.gene000381:intron | 40.0% |
!! | TGTTTTTGTTGGCAAGGTAG+TGG | + | chr1.1:30848583-30848602 | None:intergenic | 40.0% |
AACACACGGCAACACACAAA+AGG | + | chr1.1:30849047-30849066 | None:intergenic | 45.0% | |
AACCACGTTATCAGCTCCAA+CGG | + | chr1.1:30848810-30848829 | None:intergenic | 45.0% | |
AGGTGATGCATCGTATTTGC+AGG | - | chr1.1:30849244-30849263 | MS.gene000381:intron | 45.0% | |
CTAACAAGGAGTTCATCCGA+AGG | + | chr1.1:30848560-30848579 | None:intergenic | 45.0% | |
CTTTCAAATCCATCCCTGGT+GGG | + | chr1.1:30849076-30849095 | None:intergenic | 45.0% | |
GACAGGATATTGGATGCAGA+AGG | - | chr1.1:30848766-30848785 | MS.gene000381:intron | 45.0% | |
GCCTTCTTCAACATCCGTTA+AGG | + | chr1.1:30849111-30849130 | None:intergenic | 45.0% | |
GCTATTCGAGACATTACCGT+TGG | - | chr1.1:30848791-30848810 | MS.gene000381:intron | 45.0% | |
TCACCTTTCAAATCCATCCC+TGG | + | chr1.1:30849080-30849099 | None:intergenic | 45.0% | |
TGACTGTGTTGTCTTCCACA+TGG | - | chr1.1:30850040-30850059 | MS.gene000381:CDS | 45.0% | |
TGTCACTCAGAAACCTATGG+GGG | - | chr1.1:30849154-30849173 | MS.gene000381:intron | 45.0% | |
! | GCCTTAACGGATGTTGAAGA+AGG | - | chr1.1:30849107-30849126 | MS.gene000381:intron | 45.0% |
!!! | CTAGTTTTGACAGCGTCCAT+CGG | + | chr1.1:30848875-30848894 | None:intergenic | 45.0% |
AGGTGAGTTCGGAGCCTTAA+CGG | - | chr1.1:30849094-30849113 | MS.gene000381:intron | 50.0% | |
AGTGCATGCTTAAGCTGCTC+CGG | + | chr1.1:30850077-30850096 | None:intergenic | 50.0% | |
CACTCTTGCTAACAAGCCTC+AGG | - | chr1.1:30848913-30848932 | MS.gene000381:intron | 50.0% | |
CCTCCTCTGCTCATCAACTT+TGG | + | chr1.1:30848738-30848757 | None:intergenic | 50.0% | |
CCTTTCAAATCCATCCCTGG+TGG | + | chr1.1:30849077-30849096 | None:intergenic | 50.0% | |
GCACAACCATCATCAACAGC+AGG | + | chr1.1:30849215-30849234 | None:intergenic | 50.0% | |
GCAGCTTAAGCATGCACTTC+TGG | - | chr1.1:30850079-30850098 | MS.gene000381:CDS | 50.0% | |
TGGACGCTGTCAAAACTAGC+TGG | - | chr1.1:30848876-30848895 | MS.gene000381:intron | 50.0% | |
TTGTCTTCCACATGGACGCT+AGG | - | chr1.1:30850048-30850067 | MS.gene000381:CDS | 50.0% | |
! | CCACCAGGGATGGATTTGAA+AGG | - | chr1.1:30849074-30849093 | MS.gene000381:intron | 50.0% |
! | CTTTTCCTTCCGTCACCCAA+GGG | - | chr1.1:30848694-30848713 | MS.gene000381:intron | 50.0% |
! | GGAGCTGATAACGTGGTTCT+AGG | - | chr1.1:30848812-30848831 | MS.gene000381:intron | 50.0% |
! | GTTGGTCCTGCTGTTGATGA+TGG | - | chr1.1:30849206-30849225 | MS.gene000381:intron | 50.0% |
! | TACCGTTGGAGCTGATAACG+TGG | - | chr1.1:30848805-30848824 | MS.gene000381:intron | 50.0% |
! | TGGCAAGGTAGTGGCTAACA+AGG | + | chr1.1:30848574-30848593 | None:intergenic | 50.0% |
!! | AAATTCCCTTGGGTGACGGA+AGG | + | chr1.1:30848702-30848721 | None:intergenic | 50.0% |
!! | CAGAGGAGGTACTGTAAGAC+AGG | - | chr1.1:30848749-30848768 | MS.gene000381:intron | 50.0% |
!! | CCAAAGTTGATGAGCAGAGG+AGG | - | chr1.1:30848735-30848754 | MS.gene000381:intron | 50.0% |
!! | CTGCCAAAGTTGATGAGCAG+AGG | - | chr1.1:30848732-30848751 | MS.gene000381:intron | 50.0% |
ACTCAGAAACCTATGGGGGC+TGG | - | chr1.1:30849158-30849177 | MS.gene000381:intron | 55.0% | |
GAATTGCTTCCACCTGGCGT+TGG | - | chr1.1:30848527-30848546 | MS.gene000381:CDS | 55.0% | |
GTGTGTTTGACTGCCCACCA+GGG | - | chr1.1:30849060-30849079 | MS.gene000381:intron | 55.0% | |
GTTGAAGAAGGCGATGCTGC+TGG | - | chr1.1:30849119-30849138 | MS.gene000381:intron | 55.0% | |
! | CCTTTTCCTTCCGTCACCCA+AGG | - | chr1.1:30848693-30848712 | MS.gene000381:intron | 55.0% |
! | CTGGTGGGCAGTCAAACACA+CGG | + | chr1.1:30849061-30849080 | None:intergenic | 55.0% |
! | GATGGTTGTGCTGCTGAGCA+AGG | - | chr1.1:30849224-30849243 | MS.gene000381:intron | 55.0% |
!! | CCTTGGGTGACGGAAGGAAA+AGG | + | chr1.1:30848696-30848715 | None:intergenic | 55.0% |
CCACATGGACGCTAGGACAC+CGG | - | chr1.1:30850055-30850074 | MS.gene000381:CDS | 60.0% | |
CGTGTGTTTGACTGCCCACC+AGG | - | chr1.1:30849059-30849078 | MS.gene000381:intron | 60.0% | |
GTTTGACTGCCCACCAGGGA+TGG | - | chr1.1:30849064-30849083 | MS.gene000381:intron | 60.0% | |
! | AAACCTATGGGGGCTGGTGC+TGG | - | chr1.1:30849164-30849183 | MS.gene000381:intron | 60.0% |
!! | TGGCGTTGGCTTCGTCCCTT+CGG | - | chr1.1:30848541-30848560 | MS.gene000381:CDS | 60.0% |
CCGGTGTCCTAGCGTCCATG+TGG | + | chr1.1:30850058-30850077 | None:intergenic | 65.0% | |
GAAGGGACGAAGCCAACGCC+AGG | + | chr1.1:30848542-30848561 | None:intergenic | 65.0% | |
!! | GCTGGTGCTGCTGCTGGTGT+TGG | - | chr1.1:30849188-30849207 | MS.gene000381:intron | 65.0% |
GCACCAGCACCAGCCCCCAT+AGG | + | chr1.1:30849170-30849189 | None:intergenic | 70.0% | |
GGGACGAAGCCAACGCCAGG+TGG | + | chr1.1:30848539-30848558 | None:intergenic | 70.0% | |
!! | ATGGGGGCTGGTGCTGGTGC+TGG | - | chr1.1:30849170-30849189 | MS.gene000381:intron | 70.0% |
!! | GCTGGTGCTGGTGCTGCTGC+TGG | - | chr1.1:30849182-30849201 | MS.gene000381:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 30848524 | 30850136 | 30848524 | ID=MS.gene000381 |
chr1.1 | mRNA | 30848524 | 30850136 | 30848524 | ID=MS.gene000381.t1;Parent=MS.gene000381 |
chr1.1 | exon | 30850000 | 30850136 | 30850000 | ID=MS.gene000381.t1.exon1;Parent=MS.gene000381.t1 |
chr1.1 | CDS | 30850000 | 30850136 | 30850000 | ID=cds.MS.gene000381.t1;Parent=MS.gene000381.t1 |
chr1.1 | exon | 30849726 | 30849945 | 30849726 | ID=MS.gene000381.t1.exon2;Parent=MS.gene000381.t1 |
chr1.1 | CDS | 30849726 | 30849945 | 30849726 | ID=cds.MS.gene000381.t1;Parent=MS.gene000381.t1 |
chr1.1 | exon | 30849395 | 30849619 | 30849395 | ID=MS.gene000381.t1.exon3;Parent=MS.gene000381.t1 |
chr1.1 | CDS | 30849395 | 30849619 | 30849395 | ID=cds.MS.gene000381.t1;Parent=MS.gene000381.t1 |
chr1.1 | exon | 30848524 | 30848640 | 30848524 | ID=MS.gene000381.t1.exon4;Parent=MS.gene000381.t1 |
chr1.1 | CDS | 30848524 | 30848640 | 30848524 | ID=cds.MS.gene000381.t1;Parent=MS.gene000381.t1 |
Gene Sequence |
Protein sequence |