AlfalfaGEDB | MS.gene00051

M. sativa cultivar XinJiangDaYe / MS.gene00051

KEGG: K09422
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0006325 GO:0006334 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044815 GO:0065003 GO:0065004 GO:0071824 GO:0071840 GO:0097159 GO:0110165 GO:1901363
PFAM: PF00249.34 PF00538.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00051.t1	XP_013463066.1	98	297	6	0	1	297	1	297	1.10E-132	483

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00051.t1	Q8VWK4	58.0	250	94	5	1	245	1	244	7.1e-69	262.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00051.t1	A0A072VG04	98.0	297	6	0	1	297	1	297	7.7e-133	483.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene00051.t1	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00051.t1	MTR_2g031870	98.316	297	5	0	1	297	1	297	0.0	592
MS.gene00051.t1	MTR_2g031870	89.562	297	5	1	1	297	1	271	0.0	521
MS.gene00051.t1	MTR_8g494240	75.104	241	54	2	1	239	1	237	3.93e-127	365
MS.gene00051.t1	MTR_8g494240	75.104	241	54	2	1	239	1	237	1.02e-126	365
MS.gene00051.t1	MTR_8g494240	75.104	241	54	2	1	239	1	237	4.52e-125	364
MS.gene00051.t1	MTR_8g494240	49.550	111	26	3	4	114	305	385	5.01e-21	93.2
MS.gene00051.t1	MTR_8g092810	67.063	252	74	1	1	243	1	252	1.93e-110	329
MS.gene00051.t1	MTR_0095s0040	72.258	155	41	1	1	153	1	155	9.20e-77	235
MS.gene00051.t1	MTR_5g015340	48.548	241	111	6	1	236	1	233	1.60e-63	203
MS.gene00051.t1	MTR_5g015340	48.548	241	111	6	1	236	1	233	1.60e-63	203

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00051.t1	AT1G49950	57.895	247	91	6	1	241	1	240	7.52e-87	263
MS.gene00051.t1	AT1G49950	57.895	247	91	6	1	241	1	240	7.52e-87	263
MS.gene00051.t1	AT1G49950	57.895	247	91	6	1	241	1	240	7.52e-87	263
MS.gene00051.t1	AT3G49850	42.735	234	128	3	1	232	1	230	1.06e-52	175
MS.gene00051.t1	AT3G49850	42.735	234	128	3	1	232	1	230	1.06e-52	175
MS.gene00051.t1	AT5G67580	43.210	243	131	5	1	239	1	240	4.42e-52	174
MS.gene00051.t1	AT5G67580	43.210	243	131	5	1	239	1	240	4.42e-52	174
MS.gene00051.t1	AT1G72740	30.796	289	173	3	1	289	1	262	2.31e-32	122
MS.gene00051.t1	AT1G72740	30.508	295	172	4	1	289	1	268	4.74e-30	115
MS.gene00051.t1	AT1G17520	38.342	193	112	2	1	187	1	192	3.34e-28	111

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Find 86 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTGGAGTTATCAAGCA+TGG	0.542386	2.1:-60138607	MS.gene00051:CDS
AAATCGATCTCGGACTTGGT+AGG	0.533919	2.1:+60135194	None:intergenic
AAATGTGATTTGTTTGCGGA+AGG	0.516426	2.1:-60134731	MS.gene00051:CDS
AACCATTGCTTCTTTCATTG+AGG	0.488576	2.1:-60137432	MS.gene00051:intron
AACTGCTCGAGCAGCACATG+CGG	0.528875	2.1:+60135130	None:intergenic
AAGCCAAGATTTACCGTCTT+TGG	0.203558	2.1:+60134979	None:intergenic
AAGCTGGAGTTATCAAGCAT+GGG	0.537538	2.1:-60138606	MS.gene00051:CDS
AAGGTCCATGTCTGCACAAG+AGG	0.566181	2.1:-60135156	MS.gene00051:CDS
AATACACGAGGACAACTCTA+TGG	0.413485	2.1:-60138305	MS.gene00051:CDS
AATCGATCTCGGACTTGGTA+GGG	0.545887	2.1:+60135195	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTTGGTTCATGGAATATA+CGG	+	chr2.1:60137277-60137296	None:intergenic	30.0%
AAGAAAATTACAACTCGACA+AGG	+	chr2.1:60137616-60137635	None:intergenic	30.0%
AAGCAGAACAAATAAAAGTG+TGG	+	chr2.1:60135881-60135900	None:intergenic	30.0%
AAGTGTTATAGCATTGCATT+TGG	-	chr2.1:60136820-60136839	MS.gene00051:intron	30.0%
ACACCCATCAACATTATTAT+TGG	-	chr2.1:60138001-60138020	MS.gene00051:intron	30.0%
ACATAAAACTTCTAATGTCG+CGG	-	chr2.1:60137369-60137388	MS.gene00051:intron	30.0%
AGAATTTGTGTAATGTGTAG+GGG	+	chr2.1:60137412-60137431	None:intergenic	30.0%
AGATTCTCTGATTGAAATAC+GGG	-	chr2.1:60135261-60135280	MS.gene00051:CDS	30.0%
ATATCTCTTGAAACTTGAAG+AGG	+	chr2.1:60135036-60135055	None:intergenic	30.0%
ATCTAAAGGTTTCGTTATGT+GGG	-	chr2.1:60134837-60134856	MS.gene00051:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	60134613	60138677	60134613	ID=MS.gene00051
chr2.1	mRNA	60134613	60138677	60134613	ID=MS.gene00051.t1;Parent=MS.gene00051
chr2.1	exon	60138528	60138677	60138528	ID=MS.gene00051.t1.exon1;Parent=MS.gene00051.t1
chr2.1	CDS	60138528	60138677	60138528	ID=cds.MS.gene00051.t1;Parent=MS.gene00051.t1
chr2.1	exon	60138199	60138419	60138199	ID=MS.gene00051.t1.exon2;Parent=MS.gene00051.t1
chr2.1	CDS	60138199	60138419	60138199	ID=cds.MS.gene00051.t1;Parent=MS.gene00051.t1
chr2.1	exon	60137433	60137517	60137433	ID=MS.gene00051.t1.exon3;Parent=MS.gene00051.t1
chr2.1	CDS	60137433	60137517	60137433	ID=cds.MS.gene00051.t1;Parent=MS.gene00051.t1
chr2.1	exon	60136280	60136363	60136280	ID=MS.gene00051.t1.exon4;Parent=MS.gene00051.t1
chr2.1	CDS	60136280	60136363	60136280	ID=cds.MS.gene00051.t1;Parent=MS.gene00051.t1
chr2.1	exon	60134993	60135342	60134993	ID=MS.gene00051.t1.exon5;Parent=MS.gene00051.t1
chr2.1	CDS	60134993	60135342	60134993	ID=cds.MS.gene00051.t1;Parent=MS.gene00051.t1
chr2.1	exon	60134684	60134753	60134684	ID=MS.gene00051.t1.exon6;Parent=MS.gene00051.t1
chr2.1	CDS	60134684	60134753	60134684	ID=cds.MS.gene00051.t1;Parent=MS.gene00051.t1
chr2.1	exon	60134613	60134627	60134613	ID=MS.gene00051.t1.exon7;Parent=MS.gene00051.t1
chr2.1	CDS	60134613	60134627	60134613	ID=cds.MS.gene00051.t1;Parent=MS.gene00051.t1

Gene Sequence

>MS.gene00051

ATGGGTGTTCCTAAGCAAAAATGGTCAGAAGAAGAGGAATCCGCACTTAAAGCTGGAGTTATCAAGCATGGGGTGGGTAAATGGCGTACGATCCTCAAGGATCCTGAATTTAACCATGTTTTATACCTTCGGTCAAATGTTGATCTAAAGGTTTGCTTATGTTGTGCTTATTTATTCATTTGTTGTGGTAATGAATTGAATTAATGTTGGACCGTAAAATCTGGATCTAAAGGTTTCGTTATGTGGGTTGTTGGGTAGGATAAATGGCGAAATTTGAGCGTGATGGCAAGTGGATGGGCTTCGAGGGAGAAGCCAAAGGGAGCAATGAAAAGGGTGCATTATCAGGCACCAATACACGAGGACAACTCTATGGCTGTCACTCCTTTTTCTCTAAGTGATGATGAATTTGTTGATGTTCAGCCTCTTCAAGTTTCAAGAGATATGCCGCAAATTTCTGGCCCAAAAAGCTCTAGTATAAGGTTGGGCCCAATTATTTTATTTTATTTTTGTTTTTTTAATATGGTAACTTATTTAATTGTTGTCTAATTGCGTTGACAAATAGCAGCCATAGCATAGTGGAATTTTAATAAACTACTATTGTTCTGTGATACACAATTCGATACAAAATATCATAGTAATACCTCAGTTAGATTCTCTGATTGAAATACGGGAGAATCCTATTCAATTCTTGATGGGATCAGATCAGAAACGGAGTCTTGCAAATTATCCCCTCAAGTGGAAGATAATTTCGAGATGTTCGAACGTAATCAAGGGTTCAATATGAATAGTGTCACTTTAGCAACCACACAAGGTGACACTTTACCACTGTTGATCGGCTTTTTGAAAAAGGATGAGGCAGAGATCGAGTAAGAATTTGAACAAACTAATATTTATCTTGATCAACTATTGGCAATACTCGCATCTATCACCTAGGGTGCAGAATAGAACAAATAATTTTATAGTGCAGTCGGCAGTTGTCTTTCAATTAGGGATTCTTGTTAATTGCCAAGCGTGTTAAGATCATTCATTCCATTGCTTTCCTTGTATTCTTGCCTGATTTCATTATCTTGTTTTGCGTGAATCATATAAAGGAATCATTATCTTGTTTTGCTTGCATCCTATAAAGGAATCATTTATTTAACTGTGTTTACGTTATACAGGTTGGATAACCTTATAATGGAAGCTATATCTAGCTTGAATGAACTTGGTGGTTCTAATAAAACAACCATTGCTTCTTTCATTGAGGTATAATTCTGATTGCTAAACCACACTTTTATTTGTTCTGCTTTTAATTCATTAGTTGACATGTTGTTATTCTAACTTCAGGATTGTAGATGTTATTATACGTAATAAATATCACATAAAATCATTATTTTATTTTGAAAGTATAGTATTTTAGAATATCTTAGAAAATTTATTGGGAGGTGTTTCCATATTCTATGATTAGTACAAATAAAAATCATTATTTTATTTTGAAAGTATTTTAGAATATCTTAGAAAATTTATTGGGAGGTGTTTCCATATTCTATGATTAGTACAAATATGGGTTAGTACTTCGTCTGAGAATGAATCCTGACGCAAGAGTGAGGTGGCTACCTTGTGAATTGTTATATGGTCATATGGAGGTCATGGGACAGCCTCTGATATGCTTGCTGGTGTAAGGCTGCATACATCTATCCCCACTAAGATGATCTCACCTATTGGGAGGCTTGTGCCCTAGATTAATAAATTACAATCACTTGCTGTGCCTATCATTTACAAGACAATATCCTTGTTTATAGTCCTAGAATTGTATAGAAGAAAATGTAAGAAATATGTAAAGATAATTAACAAATGCAAAAGAAGAAAAAAATAATCAACTACATACATATAATAACACTGATAACGCAAATGTTTAATTTCTTTGATTTTGCTAGCTAAGTTGGGGCCATCATGAAGCAGAGCTAGTTTGAAAAAGAAGGCTAAAATTAAGCCATTATGTTGAAGACAAGTGAGCCAATTAGCTCAAATTAGCTTCAGTGGTTTGAGACCTGTGCGTGTGAGTGTCTTGCAACAACTCCATGCCTTCTGAAACCTGGTTACTGTGTCTTGTGGTTTCTGCGACTGAAAGCTTAATGCATCCTGATCTATGATGCTATTTCAACTTTCAGTTGACTAAATCTTATGTGCTTAAGATATGACATTATATTCATTGTTATTACTAACTGAAGTGTTATAGCATTGCATTTGGTTGGATACTGCTCTGTTTTATATTTCTTATACAATATTGTTTGTGTGAAACATATGTTGAATTTCATCATTTTGTATTCTGTAGGACCATTACTGGGCACCTGCTGACTTCAAAAAGCTGCTGTCAGCAAAACTGAAGTATCTTACATCTCGTGGAAAACTGATCAAGGTATATTACAACACGTTTCATCATGTCATAACTCATCCATCTAATGCAAACTTACAATAAAAATTGTCATAAATGAACTTGCTTAACTCTAAGATGCTTGGATTAGTATTAGGAAAAATCAAAGTCTCACATTAGCTAGAAATAAGGCCAAGCAGAGCTTATAAAGCCTAGGCAATCCTCACCGTAGAAATTGGTTTGCTGGAGTTGAATCAGGCCAAAAAACACTAGATGGTATTAGTGTCTATCCAGACATTATTGGACCACCGTATATTCCATGAACCAAGTTTGTTAGTGTTGGGGGTGATGAGCAGGTGTGTTAGAAAAAACTTAAGACTCACATTGGCGTGAGATAAGGCCTACATAAAACTTCTAATGTCGCGGCAAATCTTAGGCCCCAACCCCTACACATTACACAAATTCTGGTATACCAATTATATGACTGTAGGTCTGAGTTCGTGGAGTGGAAAATGGGCTAGATATGGAGTAATAGCTGAATAAAATAATCTCAGGACAAGGGGATTTGGAGAGATGGTGAAACAAATAAGGAAAGATGTCATTAAAATGAAAGTAGTGACTTTTTTCTTGAAGGAATGAAAGTAGTGCCTTGTCGAGTTGTAATTTTCTTCTTCTTCAGCATACACATCTATTTGAAATAGGGGTGCTGTGGATGCTGTTGCGTGTTTTATTCTATTCTCTGTAGTCTGTTTCTTATATACAGCCGTTGGTTGTGGGTTTGGGCTGAGATTCTAGTATACAACTCCATTTTCTAATGTAGACTTAAAGACAGTTTTCTTCTTTATATTTGAATAATCAATATTTTTTCCTGATTTAGTCTTATACATTTATTGTGAGATGCTATTCTCATTTTTGGATGTCATGTAATGTTTACTTATTTCAATTTGAGATTTTATTTCATGGGTTGAATTTTATATTTCAGGTGAAGCGCAGGTATAGGATTGCACCTACTCCAGCATATTCAGACAGAGGAAGACACCCATCAACATTATTATTGGAAGGGAGGCAAAAAGGCTCTATGAAATTTTACAGGGATGAGAGCAATATCCCTACCAAGTCCGAGATCGATTTAGAATTAGAAAAAATAAGGTCCATGTCTGCACAAGAGGCAGCCGCATGTGCTGCTCGAGCAGTTGCTGAAGCGGAAGCCCTCATGGCGGAGGCTGAAGAGGCAACAAAGGAGGCAGAGGCTGCAGAAGCGGAGGCAGATGCAATGGAAGCTTTTGTAGAAGCTGAAAGGAAAAGGCTGAAGGAGAAAAACACCCAAAGACGGTAAATCTTGGCTTTTTCTTCCTTTGTCATACTATAACTTAATACATTAATAGGACATGTAGAAGATTCTTTTGGATTACATATGATATTATTTGGGAATGCCAATTTTATTTGCTCTTCCATAAAACCTGCTTGCGAGGGCATAATACATATCTCTTCTCAAAATTAATCATCTAAAATGATTAGAAATGTGATTTGTTGCACATCTCTTCTCAAAACTGATCATCTAAAATGATTAGAAATGTGATTTGTTTGCGGAAGGATTTATCGTTTCGGAAACATTCTATTAGGCATCTTAGTGATTATTTGGTATATCTATCAAATAGATGTGGTATTTTATTTTTTTTGCATATTTAAATTTGTAGATGATCCCTGCTTGA

Protein sequence

>MS.gene00051.t1

MGVPKQKWSEEEESALKAGVIKHGVGKWRTILKDPEFNHVLYLRSNVDLKDKWRNLSVMASGWASREKPKGAMKRVHYQAPIHEDNSMAVTPFSLSDDEFVDVQPLQVSRDMPQISGPKSSSIRLDNLIMEAISSLNELGGSNKTTIASFIEDHYWAPADFKKLLSAKLKYLTSRGKLIKVKRRYRIAPTPAYSDRGRHPSTLLLEGRQKGSMKFYRDESNIPTKSEIDLELEKIRSMSAQEAAACAARAVAEAEALMAEAEEATKEAEAAEAEADAMEAFVEAERKRLKEKNTQRRNVICLRKDLSFRKHSIRHLSDYLMIPA