AlfalfaGEDB | MS.gene000672

M. sativa cultivar XinJiangDaYe / MS.gene000672

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF01657.20 PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000672.t1	KEH43939.1	73.8	907	187	8	3	865	14	913	0.00E+00	1175.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000672.t1	Q8GWJ7	45.1	641	324	11	242	874	25	645	2.3e-130	468.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000672.t1	A0A072VPL3	73.8	907	187	8	3	865	14	913	0.0e+00	1175.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000672.t1	MTR_1g105600	74.201	907	183	10	3	865	14	913	0.0	1301
MS.gene000672.t1	MTR_6g057750	49.083	927	394	24	5	874	9	914	0.0	788
MS.gene000672.t1	MTR_8g028065	49.348	920	390	26	4	874	5	897	0.0	782
MS.gene000672.t1	MTR_6g057770	48.098	894	383	19	33	873	35	900	0.0	754
MS.gene000672.t1	MTR_6g057770	39.630	270	123	13	235	484	22	271	1.47e-35	145
MS.gene000672.t1	MTR_6g057770	37.288	118	58	3	29	146	282	383	1.15e-12	72.4
MS.gene000672.t1	MTR_0007s0020	48.103	896	382	21	8	849	8	874	0.0	753
MS.gene000672.t1	MTR_6g463710	47.987	894	384	19	33	873	35	900	0.0	753
MS.gene000672.t1	MTR_6g463710	39.630	270	123	13	235	484	22	271	1.50e-35	145
MS.gene000672.t1	MTR_6g463710	37.288	118	58	3	29	146	282	383	1.17e-12	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000672.t1	AT4G23180	43.598	656	332	15	237	874	34	669	2.26e-174	520
MS.gene000672.t1	AT4G23180	33.987	153	89	4	33	182	44	187	1.75e-12	71.6
MS.gene000672.t1	AT4G05200	42.209	661	344	18	240	874	27	675	2.10e-165	497
MS.gene000672.t1	AT4G05200	34.266	143	82	2	3	145	10	140	1.09e-15	82.0
MS.gene000672.t1	AT4G05200	42.209	661	344	18	240	874	45	693	4.98e-165	497
MS.gene000672.t1	AT4G05200	34.266	143	82	2	3	145	28	158	1.12e-15	82.0
MS.gene000672.t1	AT4G23270	42.746	641	339	11	242	874	25	645	1.62e-162	489
MS.gene000672.t1	AT4G23270	42.746	641	339	11	242	874	25	645	1.62e-162	489
MS.gene000672.t1	AT4G23160	40.269	668	344	15	237	874	40	682	4.93e-161	486
MS.gene000672.t1	AT4G23160	32.335	167	95	5	23	182	40	195	5.11e-12	70.1

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Find 175 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTTGCAGCAGGTTT+GGG	0.367740	1.4:-81267913	None:intergenic
AAATTGCAAACCCTCCAAAG+TGG	0.615025	1.4:-81269086	None:intergenic
AACAAGGATAAAGAGAAAGT+AGG	0.574654	1.4:-81266756	None:intergenic
AACAGTCGTCTTAAAGAAAC+TGG	0.372508	1.4:-81267657	None:intergenic
AACGTTACAAAATTATAAGA+GGG	0.601709	1.4:+81269648	MS.gene000672:CDS
AACTCCAAGGAATTTCGTTT+TGG	0.311441	1.4:-81268117	None:intergenic
AAGATTGGTGAAGGTGGATT+TGG	0.287396	1.4:+81269157	MS.gene000672:CDS
AAGATTTCTTTGCTGTAACC+TGG	0.488588	1.4:-81269367	None:intergenic
AAGGAACAATCATAGTTCAA+TGG	0.462383	1.4:-81267073	None:intergenic
AAGTGGAGTATATCCAGACA+GGG	0.649368	1.4:+81267966	MS.gene000672:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAGGATAAAGAGAAAGT+AGG	-	chr1.4:81266759-81266778	None:intergenic	30.0%
AAGGAACAATCATAGTTCAA+TGG	-	chr1.4:81267076-81267095	None:intergenic	30.0%
AATAACATGCCAATGATAGT+AGG	+	chr1.4:81267395-81267414	MS.gene000672:intron	30.0%
AATGTTCCAAACACAATGTA+AGG	+	chr1.4:81268678-81268697	MS.gene000672:intron	30.0%
ACATACTCACATAAGTTATG+AGG	-	chr1.4:81270090-81270109	None:intergenic	30.0%
ACTTATAAAAGAGGTTGAGT+TGG	-	chr1.4:81269494-81269513	None:intergenic	30.0%
AGAAATCTTGTGGCATTAAT+AGG	+	chr1.4:81269381-81269400	MS.gene000672:CDS	30.0%
AGCAAGAAAGAACAGTTATA+AGG	+	chr1.4:81268913-81268932	MS.gene000672:CDS	30.0%
AGGAACAATCATAGTTCAAT+GGG	-	chr1.4:81267075-81267094	None:intergenic	30.0%
ATAACATGCCAATGATAGTA+GGG	+	chr1.4:81267396-81267415	MS.gene000672:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	81266740	81270519	81266740	ID=MS.gene000672
chr1.4	mRNA	81266740	81270519	81266740	ID=MS.gene000672.t1;Parent=MS.gene000672
chr1.4	exon	81266740	81267389	81266740	ID=MS.gene000672.t1.exon1;Parent=MS.gene000672.t1
chr1.4	CDS	81266740	81267389	81266740	ID=cds.MS.gene000672.t1;Parent=MS.gene000672.t1
chr1.4	exon	81267478	81268268	81267478	ID=MS.gene000672.t1.exon2;Parent=MS.gene000672.t1
chr1.4	CDS	81267478	81268268	81267478	ID=cds.MS.gene000672.t1;Parent=MS.gene000672.t1
chr1.4	exon	81268822	81268956	81268822	ID=MS.gene000672.t1.exon3;Parent=MS.gene000672.t1
chr1.4	CDS	81268822	81268956	81268822	ID=cds.MS.gene000672.t1;Parent=MS.gene000672.t1
chr1.4	exon	81269071	81269192	81269071	ID=MS.gene000672.t1.exon4;Parent=MS.gene000672.t1
chr1.4	CDS	81269071	81269192	81269071	ID=cds.MS.gene000672.t1;Parent=MS.gene000672.t1
chr1.4	exon	81269270	81269480	81269270	ID=MS.gene000672.t1.exon5;Parent=MS.gene000672.t1
chr1.4	CDS	81269270	81269480	81269270	ID=cds.MS.gene000672.t1;Parent=MS.gene000672.t1
chr1.4	exon	81269618	81269852	81269618	ID=MS.gene000672.t1.exon6;Parent=MS.gene000672.t1
chr1.4	CDS	81269618	81269852	81269618	ID=cds.MS.gene000672.t1;Parent=MS.gene000672.t1
chr1.4	exon	81269946	81270099	81269946	ID=MS.gene000672.t1.exon7;Parent=MS.gene000672.t1
chr1.4	CDS	81269946	81270099	81269946	ID=cds.MS.gene000672.t1;Parent=MS.gene000672.t1
chr1.4	exon	81270190	81270519	81270190	ID=MS.gene000672.t1.exon8;Parent=MS.gene000672.t1
chr1.4	CDS	81270190	81270519	81270190	ID=cds.MS.gene000672.t1;Parent=MS.gene000672.t1

Gene Sequence

>MS.gene000672

ATGACCTCTTTCCAAACCTACTTTCTCTTTATCCTTGTTTGCTTCATCAATTTTGGAACCACTAAAGCAAAGAACGATGATATTCTTTCCATGTATTGCTCAAACATCAACAAAACCGTTCTAAATAGCGACTTCCAATTGAATGTCAGGACCCTCCTTTTAGATTTATCTTCAAACGCCACCGCCAACAAAGAATTCTACAACACCACGGTAGCAGGCAAAAACCACTCTTCTGATACAGTCTATGGTATGTTTATGTGCAGGGGTGATGTCCCTGCTCATATCTGTAGTGAGTGCGTCACAAACATGACCCATCACAATTTATCCTCGGACCCATTGAACTATGATTGTTCCTTCTCCAAAGAGGTTGTGATTTGGAAGGAGTACTGCATGCTAAGATATTCCAACAATTCTTTCTTCTCCACTGCTGACATAAGTTCACCTTCTAGTTCCTGCTTGTCTGTCAACATGTTCAGCCAGGCAATATTCGAGCGTTTAGTTTTCAAAACCTTGAATAACGTGGCAGATGAGGCAGCCAATTTTTCAATCTGGCTTTCAAACCCTTTATTTTCAAGCTCAGTGCACACCAGACTTGTCACCCCAAGATTGCAGAAAGTGTCTGAATTTTACCATAACAAAGTTTCAGGACTGTAACAATAACATGCCAATGATAGTAGGGAACTCTGAAACTTCAAGCTGTTACATCAGATATGATGTGTACCCTTTCTATCGCCCTAGTAATGCTCCCATACCATCAGAAATCATTCCAGCTTCCAATACACTTGATTCAAAATACTCACATCATCCTACTTATCTTTCCCACAACTGTTCAACTGTAAGCAATAAAACCATAAACAGTGATTTTCTATCAAATCTCAGAACACTCTTCTCTTCTTTGTCTTCAAATGCCATCAGAACCAGTTTCTTTAAGACGACTGTTGACACGGTCAATGGCCTCTACATGTGCCGCGGTGACATCTCACTCTCCCCTACCCTCTGTCAGCAATGTGTCCAAGATGCAACCAAAAGAATATCTTCGGAGTGCCCTATCTCTAAAGAGGCTATAATTTGGTATGATAAATGCTTACTCCGCTATTCCTTTCATTCTATCCTTTCAGATATTGATACAAGTGGTCCAAAATTTCACCAATTTTATATGGCCAATACATTTAACCCAAACCTGCTGCAAAGCTTTTCCACATGGAAACTAGCAGATACTTTACATGAAGTGGAGTATATCCAGACAGGGGAGAGTACTATCAAGAATTATGAAACAAGATCGGTAAAATTGAATGATCATCAAACCCTTTACACGCTTGTTCAATGCACACCAGATTTGTCTGATGGAGACTGCAGCACCTGCCTGAAAAACATTTTCCAAAACGAAATTCCTTGGAGTTGTTTAGCAAGTCCAGAGGGAAAAATTCTATATCCCAGCTGCTATATGATGTTTGGATTGTCCCAATTCTACAACAATAATGATGAACCAGAGGCGTTAGAGCAAGTTAATCCTCCTCCAACAGCTAACGGTGAAGTTTCATTCAATTAATATAACTTGCATGACTCAATTCATCTATCCCTCTTCCAAAACATCTTTTAGCCAAATGAAAATTCAATGATAACTAAGTGATAAAATTCAAGTGGTTAATGAACTTCATCGAAAATCGAATGTACTACCCGAGTTCAATTCTTGGGTGAAACAATTTTGGCTATGCTTTACGTACCTTTCAACTGAACTTCGATAAATCAAGACCATTTTCTCGAAAGAATTGAAAGGTTAATACAAAAAAATTAATTATAATGATAAGTTATAATACTAATATGTAGTACTTGATTATTTATTATTTCATTACTCTTTATCTTTCAAAAATAACCAGCTATGCTTGAACTATAGAATCGTGAACCAATTAAAGCAACTTTGTTTATTATTGGTGTATGAATGTTCCAAACACAATGTAAGGCAACTACTTGACATCTTAATTTATGTATTTTCTTCTTGTAGTATGGCATTTTTACGGTTGTCATGGATTGCCAATTTTTATTAATGTAAGAAGCACGTGTTGATCATTTGTGCAGAGGAAGAAAAAAGAAGGCCAAGAATGGTGATAGTTGTTGTTCCGGTCATCCTTTCAACATTGCTCGTAACTTTTTCCTACTATTTGCTAACGAAAAGAGCAAGAAAGAACAGTTATAAGGCTTTAATTCTAAAAGAAAATTGTATGTATTGTGATTGTTACAGCTCGAAAAAAGTCAATTAATCCATATGTAAATGAATTTGTAATTCCATGAAGATTTGCTAATTGTTTTAATAATTCAAACATGTTTGTCTAGTTGGTCATGAAAGTACCACTTTGGAGGGTTTGCAATTTGAAATGGCCATAATTAAAACAGCAACAAACAACTTTTCACATGAAAACAAGATTGGTGAAGGTGGATTTGGAGAAGTTTACAAGGTGAGAAAACATGAAAAAGTTAATTTATTTTATTTGATTATAAAGTTCTCTGTATAAATGATGATTTGTTTTCTAAGGGCATTCTTTCTGATGGACGGCACATAGCTGTTAAGAGGCTTTCATCAAATTCCAACCAAGGCATAGTCGAGTTCAAGAATGAAATTTTACTGATAGCCAGGTTACAGCAAAGAAATCTTGTGGCATTAATAGGTTTTTGCCTAGAAGAGCAAGAGAAAATTCTTATCTATGAATATGTACCAAACGGGAGTCTTGATTCCTATTTATTTGGTTTGACTATCCAACTCAACCTCTTTTATAAGTTAATTATTCAAAGTAATTCATAAATTATGCATGATTTCAACTCTATGCATTATATTACAAAATATGTTCCTTTCAGTTTTCTCATTCATTCAAAATATGTGTAGATACTCAAGAACAGAAGTTAAGCTGGGCTGAACGTTACAAAATTATAAGAGGGACTGCTCTAGGAATTCTTTATTTGCATGAATATTCTCGCCTCAAAGTTATACACCGTGATCTCAAACCTAGTAATGTTCTATTAGATGAAAATATGAATCCTAAAATATCAGATTTTGGCATGGCTAGAATTGTTCAAATAGATCAAGATCGTGGACATACCAACAAAATTGCAGGAACATGGCATGTTTTAATTCTTACCTACATTTTTTTTCTTTCATTATTAAATGCATATGGTGTTCTGTTGCTAATTTCAATTATTATTTTTTACAATAGGGGTTACATGTCCCCGGAGTATGTAATGCTTGGACAATTTTCGGAGAAGTCGGATGTTTTTAGTTTTGGTGTCATTGTTTTAGAGATTATTACTGGAAAAAGAAATTTAAATCATTATGAATCACATCATGTTATCGAAGGCCTCATAACTTATGTGAGTATGTTAACCAAGCTGAGAAAATGAAAATTATTCAAATTAAGAGAAACCTGATGATTTGATTATTTAATTTTATAAATTGCACAGGCATGGAGACAATGGAAGAATGAAACTCCATTGATCATATTGGATCCAAAAATGCAAGAAAATTATTATCATACTGAAGTTATTAAGTGCATACAAATTGGTTTGTTATGTGTTCAAGAAAACCCAAATGTTAGACCTACAATGGCATCAGTTGTTTCATATCTTAATAATCATTCACCAGAACTGTCATCTCCACAAGAACCGGCATTTTTCATACACGATAGGATGAATCCAGAAGCAACAGCACAAATGGAATCAAGTTCTGCTAATAATTTTATATCATTTTCTGTCAACGATATGTCTATAAGTGAATTTTATCCTAGACGGTAG

Protein sequence

>MS.gene000672.t1

MTSFQTYFLFILVCFINFGTTKAKNDDILSMYCSNINKTVLNSDFQLNVRTLLLDLSSNATANKEFYNTTVAGKNHSSDTVYGMFMCRGDVPAHICSECVTNMTHHNLSSDPLNYDCSFSKEVVIWKEYCMLRYSNNSFFSTADISSPSSSCLSVNMFSQAIFERLVFKTLNNVADEAANFSIWLSNPLFSSSVHTRLVTPRLQKVSEFYHNKVSGLNAPIPSEIIPASNTLDSKYSHHPTYLSHNCSTVSNKTINSDFLSNLRTLFSSLSSNAIRTSFFKTTVDTVNGLYMCRGDISLSPTLCQQCVQDATKRISSECPISKEAIIWYDKCLLRYSFHSILSDIDTSGPKFHQFYMANTFNPNLLQSFSTWKLADTLHEVEYIQTGESTIKNYETRSVKLNDHQTLYTLVQCTPDLSDGDCSTCLKNIFQNEIPWSCLASPEGKILYPSCYMMFGLSQFYNNNDEPEALEQVNPPPTANEKRRPRMVIVVVPVILSTLLVTFSYYLLTKRARKNSYKALILKENFGHESTTLEGLQFEMAIIKTATNNFSHENKIGEGGFGEVYKGILSDGRHIAVKRLSSNSNQGIVEFKNEILLIARLQQRNLVALIGFCLEEQEKILIYEYVPNGSLDSYLFDTQEQKLSWAERYKIIRGTALGILYLHEYSRLKVIHRDLKPSNVLLDENMNPKISDFGMARIVQIDQDRGHTNKIAGTWGYMSPEYVMLGQFSEKSDVFSFGVIVLEIITGKRNLNHYESHHVIEGLITYAWRQWKNETPLIILDPKMQENYYHTEVIKCIQIGLLCVQENPNVRPTMASVVSYLNNHSPELSSPQEPAFFIHDRMNPEATAQMESSSANNFISFSVNDMSISEFYPRR