AlfalfaGEDB | MS.gene000702

M. sativa cultivar XinJiangDaYe / MS.gene000702

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0046983 GO:0097159 GO:1901363
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000702.t1	AES77546.1	91.8	159	13	0	1	159	1	159	7.90E-73	283.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000702.t1	Q9FJK3	47.4	156	81	1	1	155	1	156	4.9e-31	135.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000702.t1	G7L356	91.8	159	13	0	1	159	1	159	5.7e-73	283.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene000702.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000702.t1	MTR_7g011950	91.824	159	13	0	1	159	1	159	3.25e-98	280
MS.gene000702.t1	MTR_4g028720	90.566	159	15	0	1	159	1	159	3.19e-95	272
MS.gene000702.t1	MTR_1g077320	83.648	159	26	0	1	159	1	159	3.85e-88	254
MS.gene000702.t1	MTR_5g047580	69.872	156	47	0	1	156	1	156	5.71e-75	221
MS.gene000702.t1	MTR_1g077390	68.790	157	49	0	1	157	1	157	9.13e-74	218
MS.gene000702.t1	MTR_1g084950	75.000	156	39	0	1	156	1	156	2.53e-73	217
MS.gene000702.t1	MTR_1g077300	74.843	159	38	1	1	159	1	157	1.19e-72	215
MS.gene000702.t1	MTR_5g047560	59.615	156	47	1	1	156	1	140	1.38e-57	176
MS.gene000702.t1	MTR_1g090697	53.548	155	72	0	1	155	1	155	9.17e-56	172
MS.gene000702.t1	MTR_1g090783	55.556	153	68	0	3	155	2	154	1.58e-55	172

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000702.t1	AT5G48670	47.712	153	79	1	1	152	1	153	9.48e-36	126
MS.gene000702.t1	AT3G05860	40.940	149	87	1	1	148	1	149	1.07e-33	118
MS.gene000702.t1	AT3G05860	40.940	149	87	1	1	148	1	149	7.20e-33	117
MS.gene000702.t1	AT3G05860	40.940	149	87	1	1	148	1	149	9.78e-33	117
MS.gene000702.t1	AT5G26630	39.375	160	96	1	1	159	1	160	1.02e-28	105
MS.gene000702.t1	AT1G65300	37.324	142	88	1	3	143	2	143	1.36e-27	104
MS.gene000702.t1	AT1G65330	37.415	147	91	1	3	148	2	148	5.26e-27	102
MS.gene000702.t1	AT5G26650	35.294	153	98	1	4	155	2	154	3.63e-25	99.4
MS.gene000702.t1	AT5G27960	34.641	153	99	1	4	155	2	154	6.12e-24	95.5
MS.gene000702.t1	AT5G27810	44.792	96	52	1	29	123	1	96	2.57e-22	86.3

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Find 26 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTAAAGGAAGCCAAAC+AGG	0.425294	7.1:+49024661	MS.gene000702:CDS
AAGCCAAACAGGTGATTGAG+AGG	0.637552	7.1:+49024672	MS.gene000702:CDS
ACCTACAAGAGGAGGAAGAA+AGG	0.464332	7.1:+49024542	MS.gene000702:CDS
ACCTCTGTTTCAGAATCAAA+AGG	0.516061	7.1:-49024632	None:intergenic
ACCTTTCTTCCTCCTCTTGT+AGG	0.274122	7.1:-49024543	None:intergenic
AGAGAACTCACTATTCTTTG+TGG	0.526508	7.1:+49024581	MS.gene000702:CDS
AGAGGTGTGGCCAAATCTAA+AGG	0.522555	7.1:+49024649	MS.gene000702:CDS
AGCAGAACATTCTTATGTTT+TGG	0.267458	7.1:+49024816	MS.gene000702:CDS
ATACCTCTCAATCACCTGTT+TGG	0.354870	7.1:-49024675	None:intergenic
CAAAGCCATGACTAGGAAGA+AGG	0.543154	7.1:+49024478	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCAAATGATTACTAAAGCTA+CGG	+	chr7.1:49024754-49024773	MS.gene000702:CDS	30.0%
TTCCAATGATTCAACAAGAA+AGG	+	chr7.1:49024517-49024536	MS.gene000702:CDS	30.0%
TTTGCAAAAGGAAACTTTCT+CGG	-	chr7.1:49024739-49024758	None:intergenic	30.0%
AAATCTAAAGGAAGCCAAAC+AGG	+	chr7.1:49024661-49024680	MS.gene000702:CDS	35.0%
ACCTCTGTTTCAGAATCAAA+AGG	-	chr7.1:49024635-49024654	None:intergenic	35.0%
AGAGAACTCACTATTCTTTG+TGG	+	chr7.1:49024581-49024600	MS.gene000702:CDS	35.0%
CTCCTTTCTTGTTGAATCAT+TGG	-	chr7.1:49024522-49024541	None:intergenic	35.0%
ATACCTCTCAATCACCTGTT+TGG	-	chr7.1:49024678-49024697	None:intergenic	40.0%
TCAGAAACAGTCACATCATC+TGG	-	chr7.1:49024863-49024882	None:intergenic	40.0%
AAGCCAAACAGGTGATTGAG+AGG	+	chr7.1:49024672-49024691	MS.gene000702:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	49024485	49024964	49024485	ID=MS.gene000702
chr7.1	mRNA	49024485	49024964	49024485	ID=MS.gene000702.t1;Parent=MS.gene000702
chr7.1	exon	49024485	49024964	49024485	ID=MS.gene000702.t1.exon1;Parent=MS.gene000702.t1
chr7.1	CDS	49024485	49024964	49024485	ID=cds.MS.gene000702.t1;Parent=MS.gene000702.t1

Gene Sequence

>MS.gene000702

ATGACTAGGAAGAAGGTGAAACTCGCCTTTATTTCCAATGATTCAACAAGAAAGGAGACCTACAAGAGGAGGAAGAAAGGTATCATCAAGAAGGTGAGAGAACTCACTATTCTTTGTGGTATTTCAGCATGTGCTATAATTTATGATCCTTTTGATTCTGAAACAGAGGTGTGGCCAAATCTAAAGGAAGCCAAACAGGTGATTGAGAGGTATCAAAACTCATATATGAAAGATGAGAGAAAAAATGTGAACCGAGAAAGTTTCCTTTTGCAAATGATTACTAAAGCTACGGAACAACTGAGAATGCAAAGACACGACAATCATGAGAATGAGCAGAACATTCTTATGTTTTGGTACATGCAAAACAACAAGCTGCCAGATGATGTGACTGTTTCTGATTTGAAAGACTTGGATAAGTTAATTGAAAAAAATATGAAGGAAATTGATGACAAGATGGCTTCACTTAGTTTATCAAACTGA

Protein sequence

>MS.gene000702.t1

MTRKKVKLAFISNDSTRKETYKRRKKGIIKKVRELTILCGISACAIIYDPFDSETEVWPNLKEAKQVIERYQNSYMKDERKNVNRESFLLQMITKATEQLRMQRHDNHENEQNILMFWYMQNNKLPDDVTVSDLKDLDKLIEKNMKEIDDKMASLSLSN