Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000729.t1 | XP_003616375.2 | 95.8 | 311 | 13 | 0 | 1 | 311 | 1 | 311 | 6.40E-143 | 516.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000729.t1 | Q9C707 | 76.4 | 106 | 24 | 1 | 207 | 311 | 183 | 288 | 7.1e-34 | 146.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000729.t1 | G7K1Y5 | 95.8 | 311 | 13 | 0 | 1 | 311 | 1 | 311 | 4.6e-143 | 516.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene000729.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000729.t1 | MTR_5g079500 | 96.785 | 311 | 10 | 0 | 1 | 311 | 1 | 311 | 0.0 | 627 |
MS.gene000729.t1 | MTR_2g021380 | 93.902 | 82 | 4 | 1 | 18 | 99 | 1 | 81 | 1.11e-46 | 154 |
MS.gene000729.t1 | MTR_3g073460 | 85.714 | 84 | 8 | 3 | 18 | 99 | 1 | 82 | 5.48e-35 | 123 |
MS.gene000729.t1 | MTR_5g005110 | 62.500 | 72 | 27 | 0 | 215 | 286 | 221 | 292 | 2.64e-25 | 103 |
MS.gene000729.t1 | MTR_1g106470 | 50.000 | 94 | 41 | 2 | 197 | 286 | 173 | 264 | 2.04e-24 | 100 |
MS.gene000729.t1 | MTR_1g106460 | 46.667 | 120 | 51 | 3 | 167 | 286 | 200 | 306 | 9.44e-24 | 99.4 |
MS.gene000729.t1 | MTR_3g103030 | 58.571 | 70 | 29 | 0 | 217 | 286 | 228 | 297 | 1.54e-22 | 95.9 |
MS.gene000729.t1 | MTR_1g018090 | 62.903 | 62 | 23 | 0 | 225 | 286 | 281 | 342 | 2.64e-22 | 95.9 |
MS.gene000729.t1 | MTR_8g093500 | 53.165 | 79 | 35 | 2 | 202 | 280 | 100 | 176 | 5.95e-19 | 85.1 |
MS.gene000729.t1 | MTR_3g101810 | 62.500 | 56 | 21 | 0 | 225 | 280 | 178 | 233 | 2.86e-18 | 83.2 |
MS.gene000729.t1 | MTR_1g106480 | 60.345 | 58 | 23 | 0 | 231 | 288 | 82 | 139 | 7.78e-18 | 79.3 |
MS.gene000729.t1 | MTR_7g069590 | 66.038 | 53 | 18 | 0 | 225 | 277 | 33 | 85 | 1.13e-17 | 79.0 |
MS.gene000729.t1 | MTR_4g131160 | 43.925 | 107 | 54 | 3 | 180 | 281 | 154 | 259 | 2.59e-17 | 82.0 |
MS.gene000729.t1 | MTR_4g131160 | 43.925 | 107 | 54 | 3 | 180 | 281 | 157 | 262 | 2.81e-17 | 82.0 |
MS.gene000729.t1 | MTR_1g080890 | 50.769 | 65 | 32 | 0 | 217 | 281 | 192 | 256 | 2.34e-14 | 73.2 |
MS.gene000729.t1 | MTR_5g017210 | 55.696 | 79 | 33 | 1 | 202 | 280 | 123 | 199 | 4.76e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000729.t1 | AT5G37800 | 53.439 | 189 | 66 | 5 | 130 | 311 | 121 | 294 | 7.82e-54 | 178 |
MS.gene000729.t1 | AT1G66470 | 61.905 | 147 | 49 | 2 | 163 | 309 | 147 | 286 | 1.57e-50 | 169 |
MS.gene000729.t1 | AT2G14760 | 60.000 | 70 | 28 | 0 | 217 | 286 | 236 | 305 | 4.42e-24 | 100 |
MS.gene000729.t1 | AT4G33880 | 60.000 | 70 | 28 | 0 | 217 | 286 | 265 | 334 | 8.33e-24 | 100 |
MS.gene000729.t1 | AT1G27740 | 54.430 | 79 | 36 | 0 | 208 | 286 | 157 | 235 | 1.67e-23 | 97.4 |
MS.gene000729.t1 | AT5G43175 | 58.442 | 77 | 30 | 1 | 212 | 286 | 124 | 200 | 1.89e-23 | 96.3 |
MS.gene000729.t1 | AT2G14760 | 50.602 | 83 | 28 | 1 | 217 | 286 | 236 | 318 | 1.38e-20 | 90.9 |
MS.gene000729.t1 | AT5G01305 | 57.576 | 66 | 28 | 0 | 212 | 277 | 31 | 96 | 5.04e-20 | 85.9 |
MS.gene000729.t1 | AT2G24260 | 50.000 | 86 | 39 | 1 | 217 | 302 | 34 | 115 | 1.98e-19 | 86.3 |
MS.gene000729.t1 | AT2G24260 | 50.000 | 86 | 39 | 1 | 217 | 302 | 137 | 218 | 1.18e-18 | 85.5 |
MS.gene000729.t1 | AT4G30980 | 40.678 | 118 | 58 | 3 | 184 | 301 | 104 | 209 | 3.05e-18 | 84.0 |
MS.gene000729.t1 | AT4G30980 | 40.678 | 118 | 58 | 3 | 184 | 301 | 152 | 257 | 4.15e-18 | 84.0 |
MS.gene000729.t1 | AT4G00120 | 43.820 | 89 | 48 | 2 | 192 | 280 | 88 | 174 | 8.79e-17 | 77.8 |
MS.gene000729.t1 | AT5G58010 | 47.561 | 82 | 41 | 1 | 200 | 281 | 83 | 162 | 1.01e-16 | 79.3 |
MS.gene000729.t1 | AT3G21330 | 58.929 | 56 | 23 | 0 | 225 | 280 | 276 | 331 | 7.65e-16 | 77.8 |
MS.gene000729.t1 | AT3G50330 | 52.222 | 90 | 39 | 2 | 202 | 291 | 105 | 190 | 1.23e-11 | 63.9 |
Find 45 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCAGCTGTGCATGGCTTCT+TGG | 0.232597 | 5.2:-59956745 | None:intergenic |
TGTTGGCAGCTGATGAATTT+TGG | 0.271276 | 5.2:+59957336 | MS.gene000729:CDS |
CTTGAAGAAGCGATCTTCTA+TGG | 0.360051 | 5.2:+59956411 | MS.gene000729:CDS |
GATGGTTCACAAAGCACTAA+TGG | 0.373871 | 5.2:+59955941 | MS.gene000729:CDS |
CGTTTGGCACAAGCTCTTGT+AGG | 0.385412 | 5.2:-59956956 | None:intergenic |
TGCTTAGCTTTCAGCAGAGT+TGG | 0.386640 | 5.2:+59956134 | MS.gene000729:CDS |
AATGCAAAAGAGAAGCAAAA+TGG | 0.391258 | 5.2:+59956286 | MS.gene000729:CDS |
TTGTTGCAAATTATTCTCAT+TGG | 0.405551 | 5.2:-59956164 | None:intergenic |
TTCTTACTTGCAGCTGTGCA+TGG | 0.415931 | 5.2:-59956753 | None:intergenic |
AAATCTACCTTGGAACCGTT+TGG | 0.425715 | 5.2:-59956972 | None:intergenic |
ACCTTGGCAGCAACACTTTG+AGG | 0.436246 | 5.2:-59956807 | None:intergenic |
TCTCCTACTCTATGCAGAAA+AGG | 0.440008 | 5.2:+59956004 | MS.gene000729:CDS |
TCGTCATCACAAGGGACATT+TGG | 0.448252 | 5.2:-59956340 | None:intergenic |
TGTGCATGGCTTCTTGGCAT+TGG | 0.449331 | 5.2:-59956739 | None:intergenic |
AGCAACACTTTGAGGATCCT+TGG | 0.463727 | 5.2:-59956799 | None:intergenic |
CTCCTACTCTATGCAGAAAA+GGG | 0.464840 | 5.2:+59956005 | MS.gene000729:CDS |
TCCTCAAAGTGTTGCTGCCA+AGG | 0.467735 | 5.2:+59956806 | MS.gene000729:CDS |
GAAACTTCAAGTGGTAGCTA+TGG | 0.482106 | 5.2:+59956250 | MS.gene000729:CDS |
CATGGCTTCTTGGCATTGGT+AGG | 0.494730 | 5.2:-59956735 | None:intergenic |
ACAATGTAGAATGTTGTTGT+TGG | 0.495112 | 5.2:-59955849 | None:intergenic |
ATGAGAATAATTTGCAACAA+TGG | 0.519375 | 5.2:+59956167 | MS.gene000729:CDS |
GGTTGATTTGGTTACCATGT+TGG | 0.524353 | 5.2:+59957108 | MS.gene000729:intron |
TCATCGTCGTCGTCATCACA+AGG | 0.527111 | 5.2:-59956349 | None:intergenic |
GAGTCTTTGATTAATTTCAA+AGG | 0.527349 | 5.2:+59956067 | MS.gene000729:CDS |
TAGCTTTCAGCAGAGTTGGA+TGG | 0.529318 | 5.2:+59956138 | MS.gene000729:CDS |
CTACAAGAGCTTGTGCCAAA+CGG | 0.536984 | 5.2:+59956957 | MS.gene000729:CDS |
ACACTTTGAGGATCCTTGGA+TGG | 0.541193 | 5.2:-59956795 | None:intergenic |
GTTTCTTCAGTTGCAAGTGA+AGG | 0.554782 | 5.2:+59957153 | MS.gene000729:CDS |
TGATGATAGCTTAATAAAAG+AGG | 0.558766 | 5.2:+59956369 | MS.gene000729:CDS |
GGTGGAAAAGCTCCTGACAT+TGG | 0.579618 | 5.2:+59957368 | MS.gene000729:CDS |
AGAAGATCGCTTCTTCAAGA+CGG | 0.585959 | 5.2:-59956407 | None:intergenic |
ACAAACTTGTGCATGGTGCA+AGG | 0.588546 | 5.2:+59956214 | MS.gene000729:CDS |
CAAAATGGTGAAAGTTCATG+TGG | 0.590862 | 5.2:+59956301 | MS.gene000729:CDS |
GCTTGTGCCAAACGGTTCCA+AGG | 0.593716 | 5.2:+59956965 | MS.gene000729:CDS |
ACTAATTGCTTTCTCCAACA+TGG | 0.596287 | 5.2:-59957122 | None:intergenic |
AATAGCTTTGAAACTTCAAG+TGG | 0.597044 | 5.2:+59956241 | MS.gene000729:CDS |
TAGAGTAGGAGAATTTGTAA+TGG | 0.598886 | 5.2:-59955993 | None:intergenic |
ACATAAGTCAAATCCATCCA+AGG | 0.604373 | 5.2:+59956782 | MS.gene000729:CDS |
TCTATGATTGAAGAAGAAGA+TGG | 0.607243 | 5.2:+59955923 | MS.gene000729:CDS |
ATGGTGAAAGTTCATGTGGA+TGG | 0.618317 | 5.2:+59956305 | MS.gene000729:CDS |
AAGTAACACAAACTTGTGCA+TGG | 0.624267 | 5.2:+59956207 | MS.gene000729:CDS |
GAAGAGAGAGAATAAGTGAG+AGG | 0.626364 | 5.2:+59956925 | MS.gene000729:CDS |
TATTACAACAATCTCATGCA+AGG | 0.632712 | 5.2:+59956100 | MS.gene000729:CDS |
TGATAGCTTAATAAAAGAGG+CGG | 0.653073 | 5.2:+59956372 | MS.gene000729:CDS |
CATCGTCGTCGTCATCACAA+GGG | 0.710822 | 5.2:-59956348 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAATTAATAAAATTAA+CGG | - | chr5.2:59956615-59956634 | None:intergenic | 0.0% |
!! | GAATTAAATATAATTCTAAT+TGG | - | chr5.2:59957071-59957090 | None:intergenic | 10.0% |
!! | GATAAATTAAAAATTGTTTA+GGG | + | chr5.2:59957245-59957264 | MS.gene000729:intron | 10.0% |
!! | TGATAAATTAAAAATTGTTT+AGG | + | chr5.2:59957244-59957263 | MS.gene000729:intron | 10.0% |
!! | AGATAAAATTTGTGTTTATA+GGG | + | chr5.2:59956699-59956718 | MS.gene000729:intron | 15.0% |
!! | CAAATTATTAGAACATATTT+AGG | + | chr5.2:59956635-59956654 | MS.gene000729:intron | 15.0% |
!!! | ACTAGTTATTATATTTTTCT+TGG | + | chr5.2:59957268-59957287 | MS.gene000729:intron | 15.0% |
!!! | TTTTGTTATATATTTGTTCA+TGG | + | chr5.2:59957307-59957326 | MS.gene000729:intron | 15.0% |
!! | AATCAAAACATGATATAACT+TGG | - | chr5.2:59956844-59956863 | None:intergenic | 20.0% |
!! | ATAAAATTTGTGTTTATAGG+GGG | + | chr5.2:59956701-59956720 | MS.gene000729:intron | 20.0% |
!! | ATCAAAACATGATATAACTT+GGG | - | chr5.2:59956843-59956862 | None:intergenic | 20.0% |
!! | GAGATAAAATTTGTGTTTAT+AGG | + | chr5.2:59956698-59956717 | MS.gene000729:intron | 20.0% |
!! | GATAAAATTTGTGTTTATAG+GGG | + | chr5.2:59956700-59956719 | MS.gene000729:intron | 20.0% |
! | ACTAATTTGAAAATCTACCT+TGG | - | chr5.2:59956985-59957004 | None:intergenic | 25.0% |
! | ATGACTCTAAACATCATAAA+TGG | - | chr5.2:59956471-59956490 | None:intergenic | 25.0% |
! | ATGAGAGAAAATGAAAGTTT+AGG | + | chr5.2:59957213-59957232 | MS.gene000729:intron | 25.0% |
! | GAGTCTTTGATTAATTTCAA+AGG | + | chr5.2:59956067-59956086 | MS.gene000729:CDS | 25.0% |
! | GGAAAAATTTACAAAGACTT+TGG | - | chr5.2:59957049-59957068 | None:intergenic | 25.0% |
! | TAAAATTTGTGTTTATAGGG+GGG | + | chr5.2:59956702-59956721 | MS.gene000729:intron | 25.0% |
! | TATATATTTGTTCATGGTGT+AGG | + | chr5.2:59957313-59957332 | MS.gene000729:intron | 25.0% |
! | TGAGAGAAAATGAAAGTTTA+GGG | + | chr5.2:59957214-59957233 | MS.gene000729:intron | 25.0% |
! | TGATGATAGCTTAATAAAAG+AGG | + | chr5.2:59956369-59956388 | MS.gene000729:CDS | 25.0% |
! | TTGTTGCAAATTATTCTCAT+TGG | - | chr5.2:59956167-59956186 | None:intergenic | 25.0% |
!! | ATGAGAATAATTTGCAACAA+TGG | + | chr5.2:59956167-59956186 | MS.gene000729:CDS | 25.0% |
!! | CTCTTTTGCATTATTGAATA+TGG | - | chr5.2:59956278-59956297 | None:intergenic | 25.0% |
AATGCAAAAGAGAAGCAAAA+TGG | + | chr5.2:59956286-59956305 | MS.gene000729:CDS | 30.0% | |
AATTTACAAAGACTTTGGCT+TGG | - | chr5.2:59957044-59957063 | None:intergenic | 30.0% | |
ACAATGTAGAATGTTGTTGT+TGG | - | chr5.2:59955852-59955871 | None:intergenic | 30.0% | |
GAGTACTTCATGAAATTGAA+TGG | + | chr5.2:59956669-59956688 | MS.gene000729:intron | 30.0% | |
TAGAGTAGGAGAATTTGTAA+TGG | - | chr5.2:59955996-59956015 | None:intergenic | 30.0% | |
TATTACAACAATCTCATGCA+AGG | + | chr5.2:59956100-59956119 | MS.gene000729:CDS | 30.0% | |
TCTATGATTGAAGAAGAAGA+TGG | + | chr5.2:59955923-59955942 | MS.gene000729:CDS | 30.0% | |
TGATAGCTTAATAAAAGAGG+CGG | + | chr5.2:59956372-59956391 | MS.gene000729:CDS | 30.0% | |
!! | AATAGCTTTGAAACTTCAAG+TGG | + | chr5.2:59956241-59956260 | MS.gene000729:CDS | 30.0% |
!! | ATTCTGATGATGAATTTTGC+AGG | + | chr5.2:59957087-59957106 | MS.gene000729:intron | 30.0% |
!! | TATTTTTGACGAGACTACTA+TGG | + | chr5.2:59955871-59955890 | MS.gene000729:CDS | 30.0% |
!!! | ATGAATTTTGCAGGTTGATT+TGG | + | chr5.2:59957096-59957115 | MS.gene000729:intron | 30.0% |
!!! | CACAAGTTTGTGTTACTTTT+AGG | - | chr5.2:59956205-59956224 | None:intergenic | 30.0% |
AAGTAACACAAACTTGTGCA+TGG | + | chr5.2:59956207-59956226 | MS.gene000729:CDS | 35.0% | |
ACATAAGTCAAATCCATCCA+AGG | + | chr5.2:59956782-59956801 | MS.gene000729:CDS | 35.0% | |
ACTAATTGCTTTCTCCAACA+TGG | - | chr5.2:59957125-59957144 | None:intergenic | 35.0% | |
CAAAATGGTGAAAGTTCATG+TGG | + | chr5.2:59956301-59956320 | MS.gene000729:CDS | 35.0% | |
CGGTTATGTGCAATATATCA+AGG | - | chr5.2:59956529-59956548 | None:intergenic | 35.0% | |
TGATATATTGCACATAACCG+CGG | + | chr5.2:59956529-59956548 | MS.gene000729:intron | 35.0% | |
! | TGTTTTACTTGACCAATGTC+AGG | - | chr5.2:59957383-59957402 | None:intergenic | 35.0% |
AAATCTACCTTGGAACCGTT+TGG | - | chr5.2:59956975-59956994 | None:intergenic | 40.0% | |
AGAAGATCGCTTCTTCAAGA+CGG | - | chr5.2:59956410-59956429 | None:intergenic | 40.0% | |
ATGGTGAAAGTTCATGTGGA+TGG | + | chr5.2:59956305-59956324 | MS.gene000729:CDS | 40.0% | |
CTCCTACTCTATGCAGAAAA+GGG | + | chr5.2:59956005-59956024 | MS.gene000729:CDS | 40.0% | |
CTTGAAGAAGCGATCTTCTA+TGG | + | chr5.2:59956411-59956430 | MS.gene000729:CDS | 40.0% | |
GAAACTTCAAGTGGTAGCTA+TGG | + | chr5.2:59956250-59956269 | MS.gene000729:CDS | 40.0% | |
GAAGAGAGAGAATAAGTGAG+AGG | + | chr5.2:59956925-59956944 | MS.gene000729:CDS | 40.0% | |
GTTTCTTCAGTTGCAAGTGA+AGG | + | chr5.2:59957153-59957172 | MS.gene000729:CDS | 40.0% | |
TCTCCTACTCTATGCAGAAA+AGG | + | chr5.2:59956004-59956023 | MS.gene000729:CDS | 40.0% | |
TTTGTTCATGGTGTAGGTGT+TGG | + | chr5.2:59957319-59957338 | MS.gene000729:intron | 40.0% | |
! | GATGGTTCACAAAGCACTAA+TGG | + | chr5.2:59955941-59955960 | MS.gene000729:CDS | 40.0% |
! | TGTTGGCAGCTGATGAATTT+TGG | + | chr5.2:59957336-59957355 | MS.gene000729:CDS | 40.0% |
!! | GATGAATTTTGGCCAGTCAA+TGG | + | chr5.2:59957347-59957366 | MS.gene000729:CDS | 40.0% |
!! | GGTTGATTTGGTTACCATGT+TGG | + | chr5.2:59957108-59957127 | MS.gene000729:intron | 40.0% |
ACAAACTTGTGCATGGTGCA+AGG | + | chr5.2:59956214-59956233 | MS.gene000729:CDS | 45.0% | |
CTACAAGAGCTTGTGCCAAA+CGG | + | chr5.2:59956957-59956976 | MS.gene000729:CDS | 45.0% | |
TAGCTTTCAGCAGAGTTGGA+TGG | + | chr5.2:59956138-59956157 | MS.gene000729:CDS | 45.0% | |
TCGTCATCACAAGGGACATT+TGG | - | chr5.2:59956343-59956362 | None:intergenic | 45.0% | |
TTCTTACTTGCAGCTGTGCA+TGG | - | chr5.2:59956756-59956775 | None:intergenic | 45.0% | |
! | ACACTTTGAGGATCCTTGGA+TGG | - | chr5.2:59956798-59956817 | None:intergenic | 45.0% |
! | AGCAACACTTTGAGGATCCT+TGG | - | chr5.2:59956802-59956821 | None:intergenic | 45.0% |
! | CTTGGGTTTGAAGCAAACCT+TGG | - | chr5.2:59956826-59956845 | None:intergenic | 45.0% |
! | TGATGTTTCTGTCCTGATCG+CGG | + | chr5.2:59956582-59956601 | MS.gene000729:intron | 45.0% |
! | TGCCCTTTTCTGCATAGAGT+AGG | - | chr5.2:59956010-59956029 | None:intergenic | 45.0% |
! | TGCTTAGCTTTCAGCAGAGT+TGG | + | chr5.2:59956134-59956153 | MS.gene000729:CDS | 45.0% |
!! | GAATTTTGGCCAGTCAATGG+TGG | + | chr5.2:59957350-59957369 | MS.gene000729:CDS | 45.0% |
!! | AATTAAATATAATTCTAATT+GGG | - | chr5.2:59957070-59957089 | None:intergenic | 5.0% |
ACCTTGGCAGCAACACTTTG+AGG | - | chr5.2:59956810-59956829 | None:intergenic | 50.0% | |
CATCGTCGTCGTCATCACAA+GGG | - | chr5.2:59956351-59956370 | None:intergenic | 50.0% | |
CGTTTGGCACAAGCTCTTGT+AGG | - | chr5.2:59956959-59956978 | None:intergenic | 50.0% | |
GCACATAACCGCGGTCAAAT+GGG | + | chr5.2:59956538-59956557 | MS.gene000729:intron | 50.0% | |
GGTGGAAAAGCTCCTGACAT+TGG | + | chr5.2:59957368-59957387 | MS.gene000729:CDS | 50.0% | |
TCATCGTCGTCGTCATCACA+AGG | - | chr5.2:59956352-59956371 | None:intergenic | 50.0% | |
TGCACATAACCGCGGTCAAA+TGG | + | chr5.2:59956537-59956556 | MS.gene000729:intron | 50.0% | |
TGTGCATGGCTTCTTGGCAT+TGG | - | chr5.2:59956742-59956761 | None:intergenic | 50.0% | |
! | GGAGCTTTTCCACCATTGAC+TGG | - | chr5.2:59957362-59957381 | None:intergenic | 50.0% |
!! | CATGGCTTCTTGGCATTGGT+AGG | - | chr5.2:59956738-59956757 | None:intergenic | 50.0% |
!! | TCCTCAAAGTGTTGCTGCCA+AGG | + | chr5.2:59956806-59956825 | MS.gene000729:CDS | 50.0% |
CTCTGTGACCCATTTGACCG+CGG | - | chr5.2:59956549-59956568 | None:intergenic | 55.0% | |
GCTTGTGCCAAACGGTTCCA+AGG | + | chr5.2:59956965-59956984 | MS.gene000729:CDS | 55.0% | |
TGCAGCTGTGCATGGCTTCT+TGG | - | chr5.2:59956748-59956767 | None:intergenic | 55.0% | |
AACGGTCTGCAACCGCGATC+AGG | - | chr5.2:59956597-59956616 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 59955839 | 59957436 | 59955839 | ID=MS.gene000729 |
chr5.2 | mRNA | 59955839 | 59957436 | 59955839 | ID=MS.gene000729.t1;Parent=MS.gene000729 |
chr5.2 | exon | 59955839 | 59956432 | 59955839 | ID=MS.gene000729.t1.exon1;Parent=MS.gene000729.t1 |
chr5.2 | CDS | 59955839 | 59956432 | 59955839 | ID=cds.MS.gene000729.t1;Parent=MS.gene000729.t1 |
chr5.2 | exon | 59956720 | 59956827 | 59956720 | ID=MS.gene000729.t1.exon2;Parent=MS.gene000729.t1 |
chr5.2 | CDS | 59956720 | 59956827 | 59956720 | ID=cds.MS.gene000729.t1;Parent=MS.gene000729.t1 |
chr5.2 | exon | 59956921 | 59956986 | 59956921 | ID=MS.gene000729.t1.exon3;Parent=MS.gene000729.t1 |
chr5.2 | CDS | 59956921 | 59956986 | 59956921 | ID=cds.MS.gene000729.t1;Parent=MS.gene000729.t1 |
chr5.2 | exon | 59957109 | 59957174 | 59957109 | ID=MS.gene000729.t1.exon4;Parent=MS.gene000729.t1 |
chr5.2 | CDS | 59957109 | 59957174 | 59957109 | ID=cds.MS.gene000729.t1;Parent=MS.gene000729.t1 |
chr5.2 | exon | 59957335 | 59957436 | 59957335 | ID=MS.gene000729.t1.exon5;Parent=MS.gene000729.t1 |
chr5.2 | CDS | 59957335 | 59957436 | 59957335 | ID=cds.MS.gene000729.t1;Parent=MS.gene000729.t1 |
Gene Sequence |
Protein sequence |