AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene000756

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000756.t1 MTR_0020s0020 94.135 341 20 0 1 341 1 341 0.0 581
MS.gene000756.t1 MTR_1g100777 54.203 345 110 10 1 340 1 302 9.75e-106 312
MS.gene000756.t1 MTR_5g010680 46.273 322 108 7 7 286 5 303 4.05e-80 248
MS.gene000756.t1 MTR_3g101870 45.205 219 102 3 23 227 14 228 8.02e-59 194
MS.gene000756.t1 MTR_5g089170 38.148 270 126 7 23 286 15 249 5.49e-53 175
MS.gene000756.t1 MTR_5g017470 44.091 220 81 4 26 230 2 194 6.20e-51 171
MS.gene000756.t1 MTR_7g091370 43.000 200 78 2 27 226 16 179 6.17e-45 154
MS.gene000756.t1 MTR_5g029680 61.111 108 42 0 17 124 16 123 1.60e-41 151
MS.gene000756.t1 MTR_7g095680 51.220 123 59 1 3 124 18 140 2.84e-40 145
MS.gene000756.t1 MTR_6g043060 49.606 127 64 0 32 158 21 147 1.13e-39 143
MS.gene000756.t1 MTR_1g071360 54.955 111 50 0 31 141 30 140 5.27e-39 141
MS.gene000756.t1 MTR_1g071360 54.955 111 50 0 31 141 27 137 8.55e-39 141
MS.gene000756.t1 MTR_4g077970 65.217 92 32 0 33 124 12 103 3.17e-38 142
MS.gene000756.t1 MTR_1g102860 61.702 94 36 0 31 124 38 131 5.86e-37 135
MS.gene000756.t1 MTR_8g083100 49.612 129 65 0 34 162 23 151 1.06e-36 138
MS.gene000756.t1 MTR_1g061170 52.101 119 51 1 33 145 49 167 1.35e-36 137
MS.gene000756.t1 MTR_8g087540 59.596 99 39 1 26 124 6 103 1.61e-36 136
MS.gene000756.t1 MTR_4g088900 36.585 205 92 5 31 231 31 201 4.70e-36 130
MS.gene000756.t1 MTR_2g100680 58.491 106 43 1 31 135 29 134 8.16e-36 135
MS.gene000756.t1 MTR_3g104550 58.511 94 39 0 31 124 44 137 1.03e-34 130
MS.gene000756.t1 MTR_6g086805 57.143 98 42 0 27 124 5 102 4.80e-34 128
MS.gene000756.t1 MTR_2g017890 48.739 119 61 0 33 151 15 133 3.78e-33 126
MS.gene000756.t1 MTR_2g100670 48.696 115 59 0 31 145 31 145 1.23e-32 124
MS.gene000756.t1 MTR_2g100670 55.319 94 42 0 31 124 139 232 1.14e-31 123
MS.gene000756.t1 MTR_8g105780 59.574 94 37 1 32 124 21 114 2.89e-31 121
MS.gene000756.t1 MTR_4g045757 56.897 58 25 0 33 90 14 71 1.51e-16 73.9
MS.gene000756.t1 MTR_5g047190 41.758 91 46 2 41 124 1 91 1.09e-15 72.0
MS.gene000756.t1 MTR_4g011850 29.630 135 49 2 93 227 9 97 7.48e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000756.t1 AT5G62020 47.321 336 103 9 26 340 16 298 1.27e-86 263
MS.gene000756.t1 AT4G11660 46.243 346 122 8 25 329 51 373 3.97e-79 246
MS.gene000756.t1 AT1G46264 47.783 203 102 2 28 227 29 230 1.30e-56 187
MS.gene000756.t1 AT4G36990 42.857 217 84 3 21 226 2 189 2.27e-51 172
MS.gene000756.t1 AT2G41690 43.939 198 93 3 31 228 38 217 8.98e-45 154
MS.gene000756.t1 AT4G17750 63.725 102 37 0 23 124 42 143 1.78e-40 148
MS.gene000756.t1 AT3G22830 60.000 110 44 0 15 124 43 152 3.23e-40 146
MS.gene000756.t1 AT1G32330 67.021 94 31 0 31 124 35 128 8.92e-40 146
MS.gene000756.t1 AT1G32330 67.021 94 31 0 31 124 35 128 9.26e-40 146
MS.gene000756.t1 AT3G02990 66.667 96 31 1 29 124 20 114 7.91e-39 144
MS.gene000756.t1 AT5G43840 59.223 103 42 0 31 133 17 119 1.12e-38 139
MS.gene000756.t1 AT3G51910 55.340 103 46 0 31 133 27 129 3.38e-38 137
MS.gene000756.t1 AT5G16820 65.625 96 32 1 29 124 24 118 5.38e-37 139
MS.gene000756.t1 AT5G16820 65.625 96 32 1 29 124 24 118 5.38e-37 139
MS.gene000756.t1 AT2G26150 59.574 94 38 0 31 124 42 135 2.69e-36 134
MS.gene000756.t1 AT2G26150 59.574 94 38 0 31 124 42 135 2.69e-36 134
MS.gene000756.t1 AT5G03720 40.984 183 61 2 33 215 55 190 4.21e-36 135
MS.gene000756.t1 AT5G03720 40.984 183 61 2 33 215 55 190 4.21e-36 135
MS.gene000756.t1 AT3G63350 56.701 97 42 0 27 123 22 118 5.17e-36 132
MS.gene000756.t1 AT5G54070 55.660 106 43 1 30 131 68 173 3.66e-35 131
MS.gene000756.t1 AT4G13980 57.843 102 42 1 34 134 24 125 8.30e-35 132
MS.gene000756.t1 AT3G24520 61.053 95 37 0 30 124 14 108 1.38e-34 129
MS.gene000756.t1 AT1G67970 40.244 164 79 3 33 195 19 164 9.24e-32 122
MS.gene000756.t1 AT5G45710 56.757 111 44 2 29 139 10 116 2.53e-29 115
MS.gene000756.t1 AT5G45710 56.757 111 44 2 29 139 10 116 2.53e-29 115
MS.gene000756.t1 AT4G18880 59.596 99 39 1 26 124 9 106 3.93e-28 113
MS.gene000756.t1 AT4G18870 46.067 89 43 3 34 120 14 99 5.49e-19 86.3
MS.gene000756.t1 AT4G18870 42.391 92 50 1 29 117 139 230 1.01e-18 85.5
MS.gene000756.t1 AT1G77570 39.773 88 48 3 34 117 27 113 4.15e-11 60.8

Find 79 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAATCAAGCGGCGGATT+TGG 0.255860 6.4:-34114222 None:intergenic
AGAGAAAACGGTTGTGAAAA+TGG 0.297213 6.4:+34114324 MS.gene000756:CDS
TTATTGTGTTTGAAATATTT+AGG 0.302478 6.4:-34113554 None:intergenic
ATGGATCCACGTTTATTGTT+TGG 0.338781 6.4:+34113501 MS.gene000756:CDS
GAAATGAATCCGAAGCTATT+CGG 0.407926 6.4:+34114276 MS.gene000756:CDS
GTTATTTCGTGGAACGAAGA+TGG 0.410793 6.4:+34113482 MS.gene000756:CDS
GGGTGTTGCAACGGTGGTTG+TGG 0.423416 6.4:-34113378 None:intergenic
CATGGCTCCTTCGCCAGCTC+CGG 0.430979 6.4:+34113334 None:intergenic
GTCAAACTCCGGTGAAGAAC+AGG 0.439484 6.4:+34113981 MS.gene000756:CDS
AAGCTATTCGGTGTGGCGAT+TGG 0.446939 6.4:+34114288 MS.gene000756:CDS
TTCTTCACCGGCACGTGCAC+CGG 0.455123 6.4:+34114017 MS.gene000756:CDS
GGCTCCTTCGCCAGCTCCGG+TGG 0.461075 6.4:+34113337 MS.gene000756:CDS
TTTGAAAATTCCCACCGGTC+AGG 0.467906 6.4:-34113763 None:intergenic
TGGATTCACCGCCGTCATAC+CGG 0.469995 6.4:-34114202 None:intergenic
TCCTTCACCGGTACTGTTGA+CGG 0.472445 6.4:+34113927 MS.gene000756:CDS
GCTTGATTTGATGCCGGCGG+TGG 0.475803 6.4:+34114233 MS.gene000756:CDS
TGTTCTTCACCGGAGTTTGA+CGG 0.477010 6.4:-34113979 None:intergenic
AGCTCGGCCGGTGCACGTGC+CGG 0.493943 6.4:-34114024 None:intergenic
TGATGCCGGCGGTGGCAAAA+CGG 0.508254 6.4:+34114241 MS.gene000756:CDS
AAATTACTAGCAAAGACAGT+AGG 0.509112 6.4:-34113527 None:intergenic
ATTGAGTTGACGAACAAAGC+TGG 0.509850 6.4:-34113582 None:intergenic
CCTACATCAACCTGGTTCTA+CGG 0.514405 6.4:+34114374 MS.gene000756:CDS
ATCGCCACACCGAATAGCTT+CGG 0.514928 6.4:-34114285 None:intergenic
GCAAAACGAGTAAGAGAAAA+CGG 0.519247 6.4:+34114312 MS.gene000756:CDS
GCTCAAGGAAGTAGAGAATC+CGG 0.523566 6.4:+34114183 MS.gene000756:CDS
GGACGTGAAATCTGAACCGT+TGG 0.523870 6.4:+34114395 MS.gene000756:CDS
GATTTCACGTCCGTAGAACC+AGG 0.525961 6.4:-34114384 None:intergenic
GAGTTTGACGGTGAAATCAT+CGG 0.530218 6.4:-34113967 None:intergenic
GGTATTACCGTCAACAGTAC+CGG 0.536641 6.4:-34113934 None:intergenic
GACGGTTGCAGTTCCTTCAC+CGG 0.537577 6.4:+34113915 MS.gene000756:CDS
GCGGTGGCAAAACGGAGCTC+CGG 0.538825 6.4:+34114249 MS.gene000756:CDS
TCGACGAAAACGAGAGGTTG+AGG 0.541634 6.4:+34114049 MS.gene000756:CDS
GGCTTCTATGTGAGATTCAA+CGG 0.547067 6.4:+34113812 MS.gene000756:CDS
CTCAAGGGTGGGTGTTGCAA+CGG 0.547090 6.4:-34113387 None:intergenic
TCCGCCGCTTGATTTGATGC+CGG 0.547623 6.4:+34114227 MS.gene000756:CDS
AAGTAGAGAATCCGGTATGA+CGG 0.547644 6.4:+34114191 MS.gene000756:CDS
CAAACAGACGGTGGTGCTCA+AGG 0.562268 6.4:+34114168 MS.gene000756:CDS
TCAAATGAGTATTTCCGAAG+AGG 0.564250 6.4:+34113781 MS.gene000756:CDS
GAATAGATCTCTGAGACTCA+AGG 0.566281 6.4:-34113403 None:intergenic
AATAGATCTCTGAGACTCAA+GGG 0.568049 6.4:-34113402 None:intergenic
CCGTAGAACCAGGTTGATGT+AGG 0.571324 6.4:-34114374 None:intergenic
CTTCGGATTCATTTCCTCGC+CGG 0.573414 6.4:-34114268 None:intergenic
AATTACTAGCAAAGACAGTA+GGG 0.574678 6.4:-34113526 None:intergenic
CTATCGACGAGGTTATTTCG+TGG 0.578836 6.4:+34113471 MS.gene000756:CDS
GAAATCATCGGCATCGCCGT+TGG 0.579266 6.4:-34113955 None:intergenic
ACAGACGACGGTGAAGGTGT+TGG 0.580465 6.4:-34113850 None:intergenic
CTGTTGCGCCTACATCAACC+TGG 0.590610 6.4:+34114366 MS.gene000756:CDS
CGATATCACCTGTTCTTCAC+CGG 0.593359 6.4:-34113989 None:intergenic
ATGATTTCACCGTCAAACTC+CGG 0.595073 6.4:+34113970 MS.gene000756:CDS
AACAATAACACTCAAACAGA+CGG 0.595180 6.4:+34114156 MS.gene000756:CDS
ACCGTCAACAGTACCGGTGA+AGG 0.597630 6.4:-34113928 None:intergenic
TCATGTTCTTGACAATCCAA+CGG 0.598951 6.4:-34114411 None:intergenic
GATATCGTCGAGTTCTTCAC+CGG 0.604035 6.4:+34114005 MS.gene000756:CDS
TTAGAAAAGTAGTACCTGAC+CGG 0.612069 6.4:+34113749 MS.gene000756:CDS
ACCGCCGGCATCAAATCAAG+CGG 0.614650 6.4:-34114231 None:intergenic
AAGGGTGGGTGTTGCAACGG+TGG 0.622209 6.4:-34113384 None:intergenic
GCCGCTTGATTTGATGCCGG+CGG 0.632055 6.4:+34114230 MS.gene000756:CDS
ACAGACACAGACGACGGTGA+AGG 0.632232 6.4:-34113856 None:intergenic
AAAAGTAGTACCTGACCGGT+GGG 0.635759 6.4:+34113753 MS.gene000756:CDS
GATCTCTGAGACTCAAGGGT+GGG 0.636992 6.4:-34113398 None:intergenic
AGCAGAAACTACAACAGCGA+CGG 0.641238 6.4:+34113897 MS.gene000756:CDS
ACTCATTTGAAAATTCCCAC+CGG 0.642486 6.4:-34113768 None:intergenic
GCCGGCATCAAATCAAGCGG+CGG 0.648795 6.4:-34114228 None:intergenic
GAAAAGTAGTACCTGACCGG+TGG 0.652133 6.4:+34113752 MS.gene000756:CDS
AGCTTCTCGACGAAAACGAG+AGG 0.661566 6.4:+34114043 MS.gene000756:CDS
TAGAGAATCCGGTATGACGG+CGG 0.661957 6.4:+34114194 MS.gene000756:CDS
GGCAAAACGGAGCTCCGGCG+AGG 0.665647 6.4:+34114254 MS.gene000756:CDS
CGATAGATTTATCATCGACG+AGG 0.666770 6.4:-34113454 None:intergenic
ATTTCCGAAGAGGAGAAAAG+CGG 0.674735 6.4:+34113791 MS.gene000756:CDS
CCAGCTCCGGTGGAAAACAA+CGG 0.683738 6.4:+34113347 MS.gene000756:CDS
ACTGTTGACGGTAATACCAA+CGG 0.686195 6.4:+34113939 MS.gene000756:CDS
AGATCTCTGAGACTCAAGGG+TGG 0.688159 6.4:-34113399 None:intergenic
AGGGTTCCAAACAATAAACG+TGG 0.693378 6.4:-34113507 None:intergenic
CGATGATAAATCTATCGACG+AGG 0.705066 6.4:+34113460 MS.gene000756:CDS
GAATCCGAAGCTATTCGGTG+TGG 0.707189 6.4:+34114281 MS.gene000756:CDS
ATGATAATGATCGAACAGCG+TGG 0.724654 6.4:+34114430 MS.gene000756:CDS
GCAGAAACAGACACAGACGA+CGG 0.733840 6.4:-34113862 None:intergenic
AATAACACTCAAACAGACGG+TGG 0.734578 6.4:+34114159 MS.gene000756:CDS
TTCTATGTGAGATTCAACGG+AGG 0.744234 6.4:+34113815 MS.gene000756:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATGTTTTTGTCAAAAA+CGG - chr6.4:34113434-34113453 None:intergenic 15.0%
!!! TTATTGTGTTTGAAATATTT+AGG - chr6.4:34113557-34113576 None:intergenic 15.0%
!!! GTTTTGTTGATTTTTTTGCA+GGG + chr6.4:34113724-34113743 MS.gene000756:intron 25.0%
!!! TGTTTTGTTGATTTTTTTGC+AGG + chr6.4:34113723-34113742 MS.gene000756:intron 25.0%
AAATTACTAGCAAAGACAGT+AGG - chr6.4:34113530-34113549 None:intergenic 30.0%
AACAATAACACTCAAACAGA+CGG + chr6.4:34114156-34114175 MS.gene000756:CDS 30.0%
AATTACTAGCAAAGACAGTA+GGG - chr6.4:34113529-34113548 None:intergenic 30.0%
ACTCATTTGAAAATTCCCAC+CGG - chr6.4:34113771-34113790 None:intergenic 35.0%
AGAGAAAACGGTTGTGAAAA+TGG + chr6.4:34114324-34114343 MS.gene000756:CDS 35.0%
ATGGATCCACGTTTATTGTT+TGG + chr6.4:34113501-34113520 MS.gene000756:CDS 35.0%
GAAATGAATCCGAAGCTATT+CGG + chr6.4:34114276-34114295 MS.gene000756:CDS 35.0%
GCAAAACGAGTAAGAGAAAA+CGG + chr6.4:34114312-34114331 MS.gene000756:CDS 35.0%
TCAAATGAGTATTTCCGAAG+AGG + chr6.4:34113781-34113800 MS.gene000756:CDS 35.0%
TCATGTTCTTGACAATCCAA+CGG - chr6.4:34114414-34114433 None:intergenic 35.0%
TTAGAAAAGTAGTACCTGAC+CGG + chr6.4:34113749-34113768 MS.gene000756:CDS 35.0%
TTGACGAATTGAAGCGATAA+GGG + chr6.4:34113687-34113706 MS.gene000756:intron 35.0%
TTTGACGAATTGAAGCGATA+AGG + chr6.4:34113686-34113705 MS.gene000756:intron 35.0%
! GTTTTTGTCAAAAACGGTGT+AGG - chr6.4:34113428-34113447 None:intergenic 35.0%
!! AATAGATCTCTGAGACTCAA+GGG - chr6.4:34113405-34113424 None:intergenic 35.0%
AAGTAGAGAATCCGGTATGA+CGG + chr6.4:34114191-34114210 MS.gene000756:CDS 40.0%
AATAACACTCAAACAGACGG+TGG + chr6.4:34114159-34114178 MS.gene000756:CDS 40.0%
ACTGTTGACGGTAATACCAA+CGG + chr6.4:34113939-34113958 MS.gene000756:CDS 40.0%
AGGGTTCCAAACAATAAACG+TGG - chr6.4:34113510-34113529 None:intergenic 40.0%
ATGATTTCACCGTCAAACTC+CGG + chr6.4:34113970-34113989 MS.gene000756:CDS 40.0%
ATTTCCGAAGAGGAGAAAAG+CGG + chr6.4:34113791-34113810 MS.gene000756:CDS 40.0%
CGATAGATTTATCATCGACG+AGG - chr6.4:34113457-34113476 None:intergenic 40.0%
CGATGATAAATCTATCGACG+AGG + chr6.4:34113460-34113479 MS.gene000756:CDS 40.0%
GAGTTTGACGGTGAAATCAT+CGG - chr6.4:34113970-34113989 None:intergenic 40.0%
GGCTTCTATGTGAGATTCAA+CGG + chr6.4:34113812-34113831 MS.gene000756:CDS 40.0%
TTCTATGTGAGATTCAACGG+AGG + chr6.4:34113815-34113834 MS.gene000756:CDS 40.0%
! ATGATAATGATCGAACAGCG+TGG + chr6.4:34114430-34114449 MS.gene000756:CDS 40.0%
! GTTATTTCGTGGAACGAAGA+TGG + chr6.4:34113482-34113501 MS.gene000756:CDS 40.0%
!! ATTGAGTTGACGAACAAAGC+TGG - chr6.4:34113585-34113604 None:intergenic 40.0%
!! GAATAGATCTCTGAGACTCA+AGG - chr6.4:34113406-34113425 None:intergenic 40.0%
AAAAGTAGTACCTGACCGGT+GGG + chr6.4:34113753-34113772 MS.gene000756:CDS 45.0%
AGCAGAAACTACAACAGCGA+CGG + chr6.4:34113897-34113916 MS.gene000756:CDS 45.0%
CGATATCACCTGTTCTTCAC+CGG - chr6.4:34113992-34114011 None:intergenic 45.0%
GATATCGTCGAGTTCTTCAC+CGG + chr6.4:34114005-34114024 MS.gene000756:CDS 45.0%
GCTCAAGGAAGTAGAGAATC+CGG + chr6.4:34114183-34114202 MS.gene000756:CDS 45.0%
GGTATTACCGTCAACAGTAC+CGG - chr6.4:34113937-34113956 None:intergenic 45.0%
TGTTCTTCACCGGAGTTTGA+CGG - chr6.4:34113982-34114001 None:intergenic 45.0%
TTTGAAAATTCCCACCGGTC+AGG - chr6.4:34113766-34113785 None:intergenic 45.0%
! ATCAAATCAAGCGGCGGATT+TGG - chr6.4:34114225-34114244 None:intergenic 45.0%
! CTATCGACGAGGTTATTTCG+TGG + chr6.4:34113471-34113490 MS.gene000756:CDS 45.0%
!! CCTACATCAACCTGGTTCTA+CGG + chr6.4:34114374-34114393 MS.gene000756:CDS 45.0%
!! GTTTCTCCGTTGTTTTCCAC+CGG - chr6.4:34113356-34113375 None:intergenic 45.0%
!! AAAGAAAATAATATAATAAT+AGG - chr6.4:34113632-34113651 None:intergenic 5.0%
AGCTTCTCGACGAAAACGAG+AGG + chr6.4:34114043-34114062 MS.gene000756:CDS 50.0%
ATCGCCACACCGAATAGCTT+CGG - chr6.4:34114288-34114307 None:intergenic 50.0%
CTTCGGATTCATTTCCTCGC+CGG - chr6.4:34114271-34114290 None:intergenic 50.0%
GAAAAGTAGTACCTGACCGG+TGG + chr6.4:34113752-34113771 MS.gene000756:CDS 50.0%
GATTTCACGTCCGTAGAACC+AGG - chr6.4:34114387-34114406 None:intergenic 50.0%
GCAGAAACAGACACAGACGA+CGG - chr6.4:34113865-34113884 None:intergenic 50.0%
GGACGTGAAATCTGAACCGT+TGG + chr6.4:34114395-34114414 MS.gene000756:CDS 50.0%
GTCAAACTCCGGTGAAGAAC+AGG + chr6.4:34113981-34114000 MS.gene000756:CDS 50.0%
TAGAGAATCCGGTATGACGG+CGG + chr6.4:34114194-34114213 MS.gene000756:CDS 50.0%
TCCTTCACCGGTACTGTTGA+CGG + chr6.4:34113927-34113946 MS.gene000756:CDS 50.0%
TCGACGAAAACGAGAGGTTG+AGG + chr6.4:34114049-34114068 MS.gene000756:CDS 50.0%
! CTCGTTTTCGTCGAGAAGCT+CGG - chr6.4:34114043-34114062 None:intergenic 50.0%
! GAATCCGAAGCTATTCGGTG+TGG + chr6.4:34114281-34114300 MS.gene000756:CDS 50.0%
!! AAGCTATTCGGTGTGGCGAT+TGG + chr6.4:34114288-34114307 MS.gene000756:CDS 50.0%
!! AGATCTCTGAGACTCAAGGG+TGG - chr6.4:34113402-34113421 None:intergenic 50.0%
!! CCGTAGAACCAGGTTGATGT+AGG - chr6.4:34114377-34114396 None:intergenic 50.0%
!! GATCTCTGAGACTCAAGGGT+GGG - chr6.4:34113401-34113420 None:intergenic 50.0%
!!! GAAGCCGCTTTTCTCCTCTT+CGG - chr6.4:34113798-34113817 None:intergenic 50.0%
ACAGACACAGACGACGGTGA+AGG - chr6.4:34113859-34113878 None:intergenic 55.0%
ACCGCCGGCATCAAATCAAG+CGG - chr6.4:34114234-34114253 None:intergenic 55.0%
CAAACAGACGGTGGTGCTCA+AGG + chr6.4:34114168-34114187 MS.gene000756:CDS 55.0%
CCAGCTCCGGTGGAAAACAA+CGG + chr6.4:34113347-34113366 MS.gene000756:CDS 55.0%
CTGTTGCGCCTACATCAACC+TGG + chr6.4:34114366-34114385 MS.gene000756:CDS 55.0%
GAAATCATCGGCATCGCCGT+TGG - chr6.4:34113958-34113977 None:intergenic 55.0%
GACGGTTGCAGTTCCTTCAC+CGG + chr6.4:34113915-34113934 MS.gene000756:CDS 55.0%
TGGATTCACCGCCGTCATAC+CGG - chr6.4:34114205-34114224 None:intergenic 55.0%
! ACAGACGACGGTGAAGGTGT+TGG - chr6.4:34113853-34113872 None:intergenic 55.0%
! CTCAAGGGTGGGTGTTGCAA+CGG - chr6.4:34113390-34113409 None:intergenic 55.0%
! TCCGCCGCTTGATTTGATGC+CGG + chr6.4:34114227-34114246 MS.gene000756:CDS 55.0%
! TTTTCGTCGAGAAGCTCGGC+CGG - chr6.4:34114039-34114058 None:intergenic 55.0%
!! ACCGTCAACAGTACCGGTGA+AGG - chr6.4:34113931-34113950 None:intergenic 55.0%
GCCGGCATCAAATCAAGCGG+CGG - chr6.4:34114231-34114250 None:intergenic 60.0%
TGATGCCGGCGGTGGCAAAA+CGG + chr6.4:34114241-34114260 MS.gene000756:CDS 60.0%
TTCTTCACCGGCACGTGCAC+CGG + chr6.4:34114017-34114036 MS.gene000756:CDS 60.0%
! AAGGGTGGGTGTTGCAACGG+TGG - chr6.4:34113387-34113406 None:intergenic 60.0%
! GCCGCTTGATTTGATGCCGG+CGG + chr6.4:34114230-34114249 MS.gene000756:CDS 60.0%
! GCTTGATTTGATGCCGGCGG+TGG + chr6.4:34114233-34114252 MS.gene000756:CDS 60.0%
! GGGTGTTGCAACGGTGGTTG+TGG - chr6.4:34113381-34113400 None:intergenic 60.0%
! TTTTCCACCGGAGCTGGCGA+AGG - chr6.4:34113344-34113363 None:intergenic 60.0%
!! CCGTTGTTTTCCACCGGAGC+TGG - chr6.4:34113350-34113369 None:intergenic 60.0%
GCGGTGGCAAAACGGAGCTC+CGG + chr6.4:34114249-34114268 MS.gene000756:CDS 65.0%
! GAGCTCCGTTTTGCCACCGC+CGG - chr6.4:34114249-34114268 None:intergenic 65.0%
GGCAAAACGGAGCTCCGGCG+AGG + chr6.4:34114254-34114273 MS.gene000756:CDS 70.0%
AGCTCGGCCGGTGCACGTGC+CGG - chr6.4:34114027-34114046 None:intergenic 75.0%
GGCTCCTTCGCCAGCTCCGG+TGG + chr6.4:34113337-34113356 MS.gene000756:CDS 75.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 34113335 34114494 34113335 ID=MS.gene000756
chr6.4 mRNA 34113335 34114494 34113335 ID=MS.gene000756.t1;Parent=MS.gene000756
chr6.4 exon 34113335 34113610 34113335 ID=MS.gene000756.t1.exon1;Parent=MS.gene000756.t1
chr6.4 CDS 34113335 34113610 34113335 ID=cds.MS.gene000756.t1;Parent=MS.gene000756.t1
chr6.4 exon 34113745 34114494 34113745 ID=MS.gene000756.t1.exon2;Parent=MS.gene000756.t1
chr6.4 CDS 34113745 34114494 34113745 ID=cds.MS.gene000756.t1;Parent=MS.gene000756.t1
Gene Sequence

>MS.gene000756

ATGGCTCCTTCGCCAGCTCCGGTGGAAAACAACGGAGAAACAACCACAACCACCGTTGCAACACCCACCCTTGAGTCTCAGAGATCTATTCCTACACCGTTTTTGACAAAAACATATAACCTCGTCGATGATAAATCTATCGACGAGGTTATTTCGTGGAACGAAGATGGATCCACGTTTATTGTTTGGAACCCTACTGTCTTTGCTAGTAATTTGCTTCCTAAATATTTCAAACACAATAATTTCTCCAGCTTTGTTCGTCAACTCAATACTTATGTAAATTCAACTTTCTTTCCTATTATTATATTATTTTCTTTTATGCTTGTTTTTGTATGAATTTTAATTAATATTTTTGACGAATTGAAGCGATAAGGGCTGAATTTTAACTTGTTTTGTTGATTTTTTTGCAGGGATTTAGAAAAGTAGTACCTGACCGGTGGGAATTTTCAAATGAGTATTTCCGAAGAGGAGAAAAGCGGCTTCTATGTGAGATTCAACGGAGGAAGATCTGTTCTCCAACACCTTCACCGTCGTCTGTGTCTGTTTCTGCTGCTGTAACAGCAGCAGAAACTACAACAGCGACGGTTGCAGTTCCTTCACCGGTACTGTTGACGGTAATACCAACGGCGATGCCGATGATTTCACCGTCAAACTCCGGTGAAGAACAGGTGATATCGTCGAGTTCTTCACCGGCACGTGCACCGGCCGAGCTTCTCGACGAAAACGAGAGGTTGAGGAAAGAGAACTCTCTATTGAATAAAGAACTTGCTGAGATGAGATTGCTTTGTAACAATATATACTCTCTGATGTCAAATTTTGCAAACAATAACACTCAAACAGACGGTGGTGCTCAAGGAAGTAGAGAATCCGGTATGACGGCGGTGAATCCAAATCCGCCGCTTGATTTGATGCCGGCGGTGGCAAAACGGAGCTCCGGCGAGGAAATGAATCCGAAGCTATTCGGTGTGGCGATTGGAGCAAAACGAGTAAGAGAAAACGGTTGTGAAAATGGTGAAAGAGAAGATGATACACTGTTGCGCCTACATCAACCTGGTTCTACGGACGTGAAATCTGAACCGTTGGATTGTCAAGAACATGATAATGATCGAACAGCGTGGTTGAATCAGAGTCGTAGAAAGAATCAGAATTTTTGTAAATGA
Protein sequence

>MS.gene000756.t1

MAPSPAPVENNGETTTTTVATPTLESQRSIPTPFLTKTYNLVDDKSIDEVISWNEDGSTFIVWNPTVFASNLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKICSPTPSPSSVSVSAAVTAAETTTATVAVPSPVLLTVIPTAMPMISPSNSGEEQVISSSSSPARAPAELLDENERLRKENSLLNKELAEMRLLCNNIYSLMSNFANNNTQTDGGAQGSRESGMTAVNPNPPLDLMPAVAKRSSGEEMNPKLFGVAIGAKRVRENGCENGEREDDTLLRLHQPGSTDVKSEPLDCQEHDNDRTAWLNQSRRKNQNFCK