Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000780.t1 | RHN51648.1 | 94.4 | 90 | 5 | 0 | 1 | 90 | 7 | 96 | 9.20E-40 | 172.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000780.t1 | Q8L9Y3 | 38.8 | 85 | 51 | 1 | 7 | 90 | 6 | 90 | 8.5e-10 | 64.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000780.t1 | A0A072U908 | 94.4 | 90 | 5 | 0 | 1 | 90 | 7 | 96 | 6.6e-40 | 172.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene000780.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000780.t1 | MTR_6g045327 | 94.444 | 90 | 5 | 0 | 1 | 90 | 7 | 96 | 1.20e-55 | 178 |
| MS.gene000780.t1 | MTR_8g093040 | 62.222 | 90 | 34 | 0 | 1 | 90 | 7 | 96 | 3.65e-33 | 117 |
| MS.gene000780.t1 | MTR_4g021760 | 51.163 | 86 | 41 | 1 | 5 | 90 | 8 | 92 | 1.24e-21 | 87.8 |
| MS.gene000780.t1 | MTR_5g055260 | 52.439 | 82 | 38 | 1 | 8 | 89 | 10 | 90 | 1.52e-20 | 84.0 |
| MS.gene000780.t1 | MTR_4g021790 | 42.857 | 112 | 59 | 3 | 8 | 115 | 10 | 120 | 2.57e-20 | 83.6 |
| MS.gene000780.t1 | MTR_6g016850 | 51.220 | 82 | 39 | 1 | 7 | 88 | 8 | 88 | 3.82e-20 | 80.9 |
| MS.gene000780.t1 | MTR_8g105600 | 51.852 | 81 | 38 | 1 | 8 | 88 | 9 | 88 | 9.90e-20 | 84.0 |
| MS.gene000780.t1 | MTR_1g032570 | 38.710 | 124 | 68 | 4 | 7 | 126 | 10 | 129 | 4.67e-18 | 79.0 |
| MS.gene000780.t1 | MTR_4g021855 | 45.783 | 83 | 44 | 1 | 8 | 90 | 10 | 91 | 1.55e-17 | 76.6 |
| MS.gene000780.t1 | MTR_4g021845 | 45.783 | 83 | 44 | 1 | 8 | 90 | 10 | 91 | 2.33e-17 | 74.7 |
| MS.gene000780.t1 | MTR_2g034960 | 38.824 | 85 | 50 | 2 | 7 | 90 | 28 | 111 | 5.70e-12 | 61.6 |
| MS.gene000780.t1 | MTR_4g121020 | 38.824 | 85 | 50 | 2 | 7 | 90 | 30 | 113 | 1.26e-11 | 60.8 |
| MS.gene000780.t1 | MTR_4g121020 | 38.824 | 85 | 50 | 2 | 7 | 90 | 30 | 113 | 1.33e-11 | 60.5 |
| MS.gene000780.t1 | MTR_3g086100 | 32.941 | 85 | 57 | 0 | 6 | 90 | 11 | 95 | 5.46e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000780.t1 | AT2G01760 | 35.200 | 125 | 72 | 5 | 7 | 126 | 6 | 126 | 1.31e-13 | 66.2 |
Find 32 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAATATTTGCTAGATCTA+AGG | 0.250919 | 6.4:+29377287 | None:intergenic |
| TAGATCTAGCAAATATTGAT+TGG | 0.369080 | 6.4:-29377284 | MS.gene000780:CDS |
| TGACAGGAATATTGATTTGT+TGG | 0.378211 | 6.4:+29378789 | None:intergenic |
| ACTTCCCCAACAATTCTTAG+AGG | 0.388561 | 6.4:-29379141 | MS.gene000780:CDS |
| TAAGGTTTCTTCACCGGATA+CGG | 0.394232 | 6.4:+29377305 | None:intergenic |
| TGATTTGTTGGGTAATTTGT+TGG | 0.402510 | 6.4:+29378801 | None:intergenic |
| TAGGCCCTCTAAGAATTGTT+GGG | 0.405760 | 6.4:+29379136 | None:intergenic |
| TGCGACACCTTCCCCGTATC+CGG | 0.417481 | 6.4:-29377318 | MS.gene000780:CDS |
| CGCGGGATGCGAAGGAGAAA+AGG | 0.420058 | 6.4:+29377355 | None:intergenic |
| TTAGGCCCTCTAAGAATTGT+TGG | 0.426530 | 6.4:+29379135 | None:intergenic |
| AACGATGGCATTATGGATAG+TGG | 0.427074 | 6.4:+29379088 | None:intergenic |
| GCCATCGTTGAAAAGTCAAT+TGG | 0.435684 | 6.4:-29379074 | MS.gene000780:CDS |
| GACAGGAATATTGATTTGTT+GGG | 0.435755 | 6.4:+29378790 | None:intergenic |
| AATTTGTTGGAGAAAATCAT+AGG | 0.440238 | 6.4:+29378814 | None:intergenic |
| AAGGTTTCTTCACCGGATAC+GGG | 0.476917 | 6.4:+29377306 | None:intergenic |
| GGCTTCTTCTTAGGCCTCCC+CGG | 0.477798 | 6.4:-29377381 | MS.gene000780:intron |
| GCGAAGGAGAAAAGGAAGCC+GGG | 0.487875 | 6.4:+29377363 | None:intergenic |
| TAGATCTAAGGTTTCTTCAC+CGG | 0.488827 | 6.4:+29377299 | None:intergenic |
| ACAATTCTTAGAGGGCCTAA+AGG | 0.504318 | 6.4:-29379132 | MS.gene000780:CDS |
| TGCGAAGGAGAAAAGGAAGC+CGG | 0.507429 | 6.4:+29377362 | None:intergenic |
| GATCAATCACAAGAACCTTT+AGG | 0.516587 | 6.4:+29379117 | None:intergenic |
| CGTTGAAAAGTCAATTGGAT+GGG | 0.523926 | 6.4:-29379069 | MS.gene000780:CDS |
| TCAATTGGATGGGATTTCAA+AGG | 0.534106 | 6.4:-29379059 | MS.gene000780:intron |
| TATATGTTCTTACTAATGAC+AGG | 0.536013 | 6.4:+29378773 | None:intergenic |
| TTCTTCACCGGATACGGGGA+AGG | 0.559507 | 6.4:+29377311 | None:intergenic |
| TCGTTGAAAAGTCAATTGGA+TGG | 0.580260 | 6.4:-29379070 | MS.gene000780:CDS |
| CTTCCCCAACAATTCTTAGA+GGG | 0.585726 | 6.4:-29379140 | MS.gene000780:CDS |
| AAAAGAAGCATTAGAGCATG+TGG | 0.613637 | 6.4:+29378913 | None:intergenic |
| CGAAGGAGAAAAGGAAGCCG+GGG | 0.620635 | 6.4:+29377364 | None:intergenic |
| AGGAGAAAAGGAAGCCGGGG+AGG | 0.623304 | 6.4:+29377367 | None:intergenic |
| AGGCCCTCTAAGAATTGTTG+GGG | 0.628375 | 6.4:+29379137 | None:intergenic |
| AGGTTTCTTCACCGGATACG+GGG | 0.637826 | 6.4:+29377307 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATATTATATATATAA+AGG | - | chr6.4:29378586-29378605 | MS.gene000780:intron | 0.0% |
| !! | AAATATATTATATATATAAA+GGG | - | chr6.4:29378587-29378606 | MS.gene000780:intron | 0.0% |
| !! | TAAAAGAAAAGAAAAATAAG+TGG | + | chr6.4:29378098-29378117 | None:intergenic | 15.0% |
| !!! | ATCACTTCAATAATTTTTTT+TGG | + | chr6.4:29378187-29378206 | None:intergenic | 15.0% |
| !!! | ATTGAAAATTTGATAGATTT+TGG | - | chr6.4:29378327-29378346 | MS.gene000780:intron | 15.0% |
| !!! | ATTTAATTGATAATTCAGTA+TGG | + | chr6.4:29377412-29377431 | None:intergenic | 15.0% |
| !!! | TTGAAAATTTGATAGATTTT+GGG | - | chr6.4:29378328-29378347 | MS.gene000780:intron | 15.0% |
| !!! | GCATCTAAAATATAAATTGA+GGG | + | chr6.4:29378160-29378179 | None:intergenic | 20.0% |
| !!! | GTGTTTTTATTTTCTCTTTT+TGG | + | chr6.4:29378633-29378652 | None:intergenic | 20.0% |
| !!! | GTTTCTTTTTTGAATTACTT+TGG | - | chr6.4:29378253-29378272 | MS.gene000780:intron | 20.0% |
| !!! | TGCATCTAAAATATAAATTG+AGG | + | chr6.4:29378161-29378180 | None:intergenic | 20.0% |
| ! | AAAAGAAACTCATGTTGATA+TGG | - | chr6.4:29377954-29377973 | MS.gene000780:intron | 25.0% |
| ! | AATGCATCAAGAATTTCTAA+GGG | - | chr6.4:29378035-29378054 | MS.gene000780:intron | 25.0% |
| ! | TAGATCTAGCAAATATTGAT+TGG | - | chr6.4:29379140-29379159 | MS.gene000780:CDS | 25.0% |
| ! | TATATGTTCTTACTAATGAC+AGG | + | chr6.4:29377654-29377673 | None:intergenic | 25.0% |
| ! | TGAATGTATGTTATTAGCAA+AGG | - | chr6.4:29378402-29378421 | MS.gene000780:intron | 25.0% |
| !! | ATCAATATTTGCTAGATCTA+AGG | + | chr6.4:29379140-29379159 | None:intergenic | 25.0% |
| !! | GATCAAATTCATGTTGATAA+TGG | - | chr6.4:29377928-29377947 | MS.gene000780:intron | 25.0% |
| !!! | AATTTGTTGGAGAAAATCAT+AGG | + | chr6.4:29377613-29377632 | None:intergenic | 25.0% |
| !!! | TTAAACGGTTCTTTTTTGTT+GGG | + | chr6.4:29378002-29378021 | None:intergenic | 25.0% |
| CAAAAAAGAACCGTTTAACA+TGG | - | chr6.4:29378004-29378023 | MS.gene000780:intron | 30.0% | |
| CAATGCATCAAGAATTTCTA+AGG | - | chr6.4:29378034-29378053 | MS.gene000780:intron | 30.0% | |
| CATGATTTAGTTGTGTACTA+AGG | - | chr6.4:29378469-29378488 | MS.gene000780:intron | 30.0% | |
| TCAAAAAAGAAACCTGTAGA+TGG | + | chr6.4:29378246-29378265 | None:intergenic | 30.0% | |
| ! | AAGATTTTCTTGCAACATGT+TGG | + | chr6.4:29377891-29377910 | None:intergenic | 30.0% |
| !! | CTCTTTTTGGTGTAATTCTT+GGG | + | chr6.4:29378620-29378639 | None:intergenic | 30.0% |
| !! | GACAGGAATATTGATTTGTT+GGG | + | chr6.4:29377637-29377656 | None:intergenic | 30.0% |
| !! | GTTGGCAAATGTTTTTGATT+AGG | + | chr6.4:29377873-29377892 | None:intergenic | 30.0% |
| !! | TCTCTTTTTGGTGTAATTCT+TGG | + | chr6.4:29378621-29378640 | None:intergenic | 30.0% |
| !! | TGACAGGAATATTGATTTGT+TGG | + | chr6.4:29377638-29377657 | None:intergenic | 30.0% |
| !! | TGATTTGTTGGGTAATTTGT+TGG | + | chr6.4:29377626-29377645 | None:intergenic | 30.0% |
| !!! | GTTAAACGGTTCTTTTTTGT+TGG | + | chr6.4:29378003-29378022 | None:intergenic | 30.0% |
| !!! | TAAACGGTTCTTTTTTGTTG+GGG | + | chr6.4:29378001-29378020 | None:intergenic | 30.0% |
| !!! | TTTTGCATTGACTCTTTTGA+GGG | - | chr6.4:29377530-29377549 | MS.gene000780:intron | 30.0% |
| ATTGAAGTGATGAATGTTCC+TGG | - | chr6.4:29378196-29378215 | MS.gene000780:intron | 35.0% | |
| CGTTGAAAAGTCAATTGGAT+GGG | - | chr6.4:29377355-29377374 | MS.gene000780:CDS | 35.0% | |
| GATCAATCACAAGAACCTTT+AGG | + | chr6.4:29377310-29377329 | None:intergenic | 35.0% | |
| GGCAAAGAATCTTACTATCA+AGG | + | chr6.4:29378077-29378096 | None:intergenic | 35.0% | |
| TCAATTGGATGGGATTTCAA+AGG | - | chr6.4:29377365-29377384 | MS.gene000780:CDS | 35.0% | |
| TCGTTGAAAAGTCAATTGGA+TGG | - | chr6.4:29377354-29377373 | MS.gene000780:CDS | 35.0% | |
| TTGATTAGGTCATCACTCAA+AGG | + | chr6.4:29377859-29377878 | None:intergenic | 35.0% | |
| TTGCTTGAGACCATGTTAAA+CGG | + | chr6.4:29378017-29378036 | None:intergenic | 35.0% | |
| ! | ACTTTTCAACGATGGCATTA+TGG | + | chr6.4:29377346-29377365 | None:intergenic | 35.0% |
| ! | CTTGTGACTCAAGTCTTTTT+AGG | + | chr6.4:29378762-29378781 | None:intergenic | 35.0% |
| ! | TAGATCTAAGGTTTCTTCAC+CGG | + | chr6.4:29379128-29379147 | None:intergenic | 35.0% |
| !! | AAAAGAAGCATTAGAGCATG+TGG | + | chr6.4:29377514-29377533 | None:intergenic | 35.0% |
| !! | TCCAATTGACTTTTCAACGA+TGG | + | chr6.4:29377354-29377373 | None:intergenic | 35.0% |
| !!! | AAACGGTTCTTTTTTGTTGG+GGG | + | chr6.4:29378000-29378019 | None:intergenic | 35.0% |
| !!! | CTTTTGCATTGACTCTTTTG+AGG | - | chr6.4:29377529-29377548 | MS.gene000780:intron | 35.0% |
| !!! | TCTTTGAGGAGCTGTTTTTA+GGG | + | chr6.4:29378703-29378722 | None:intergenic | 35.0% |
| !!! | TGGTTTTTCTTTGGGGTTTT+TGG | + | chr6.4:29378655-29378674 | None:intergenic | 35.0% |
| !!! | TTCTTTGAGGAGCTGTTTTT+AGG | + | chr6.4:29378704-29378723 | None:intergenic | 35.0% |
| AACGATGGCATTATGGATAG+TGG | + | chr6.4:29377339-29377358 | None:intergenic | 40.0% | |
| ACAATTCTTAGAGGGCCTAA+AGG | - | chr6.4:29377292-29377311 | MS.gene000780:CDS | 40.0% | |
| ACTTCCCCAACAATTCTTAG+AGG | - | chr6.4:29377283-29377302 | MS.gene000780:CDS | 40.0% | |
| ATATGCTCTCTTGTCAAACC+AGG | + | chr6.4:29378217-29378236 | None:intergenic | 40.0% | |
| ATATGTGACATGTGCAGTGA+TGG | - | chr6.4:29377767-29377786 | MS.gene000780:intron | 40.0% | |
| CTTCCCCAACAATTCTTAGA+GGG | - | chr6.4:29377284-29377303 | MS.gene000780:CDS | 40.0% | |
| GCCATCGTTGAAAAGTCAAT+TGG | - | chr6.4:29377350-29377369 | MS.gene000780:CDS | 40.0% | |
| TAAGGTTTCTTCACCGGATA+CGG | + | chr6.4:29379122-29379141 | None:intergenic | 40.0% | |
| TATGTGACATGTGCAGTGAT+GGG | - | chr6.4:29377768-29377787 | MS.gene000780:intron | 40.0% | |
| ! | TAGGCCCTCTAAGAATTGTT+GGG | + | chr6.4:29377291-29377310 | None:intergenic | 40.0% |
| ! | TGTTGATGGATCAACAAGTG+CGG | - | chr6.4:29377791-29377810 | MS.gene000780:intron | 40.0% |
| ! | TTAGGCCCTCTAAGAATTGT+TGG | + | chr6.4:29377292-29377311 | None:intergenic | 40.0% |
| !! | ACTCTTTTGAGGGAAGCAAA+GGG | - | chr6.4:29377540-29377559 | MS.gene000780:intron | 40.0% |
| !! | TGACTCAAGTCTTTTTAGGC+TGG | + | chr6.4:29378758-29378777 | None:intergenic | 40.0% |
| !!! | CTTTGAGGAGCTGTTTTTAG+GGG | + | chr6.4:29378702-29378721 | None:intergenic | 40.0% |
| !!! | TTTGAGGAGCTGTTTTTAGG+GGG | + | chr6.4:29378701-29378720 | None:intergenic | 40.0% |
| AAGGTTTCTTCACCGGATAC+GGG | + | chr6.4:29379121-29379140 | None:intergenic | 45.0% | |
| ACTCCCGACACAAGTCAAAA+AGG | - | chr6.4:29378822-29378841 | MS.gene000780:CDS | 45.0% | |
| ATCAACAAGTGCGGCTATGA+AGG | - | chr6.4:29377800-29377819 | MS.gene000780:intron | 45.0% | |
| CTAAGGGCTGTGAATCAGTT+TGG | - | chr6.4:29378051-29378070 | MS.gene000780:intron | 45.0% | |
| GACCTCGAATCAAAGGCAAT+CGG | - | chr6.4:29378791-29378810 | MS.gene000780:CDS | 45.0% | |
| GCATATTGCTAGCCATCTAC+AGG | - | chr6.4:29378231-29378250 | MS.gene000780:intron | 45.0% | |
| GCATTAGAGCATGTGGTAAC+TGG | + | chr6.4:29377507-29377526 | None:intergenic | 45.0% | |
| GCTTGAGGAAGTCTACAGAT+AGG | + | chr6.4:29378931-29378950 | None:intergenic | 45.0% | |
| GTCATATCGTTCACTGATGG+CGG | + | chr6.4:29378733-29378752 | None:intergenic | 45.0% | |
| GTCATTCCTATTCCAGATCC+CGG | + | chr6.4:29378899-29378918 | None:intergenic | 45.0% | |
| GTCTACAGATAGGTGTGAAG+TGG | + | chr6.4:29378921-29378940 | None:intergenic | 45.0% | |
| GTGGTCATATCGTTCACTGA+TGG | + | chr6.4:29378736-29378755 | None:intergenic | 45.0% | |
| TGTTCAAAGATGCAGAGCTG+AGG | + | chr6.4:29378958-29378977 | None:intergenic | 45.0% | |
| ! | AGGCCCTCTAAGAATTGTTG+GGG | + | chr6.4:29377290-29377309 | None:intergenic | 45.0% |
| ! | AGGGGGATTTGGCATTTTGA+GGG | + | chr6.4:29378684-29378703 | None:intergenic | 45.0% |
| ! | ATTGCCTTTGATTCGAGGTC+GGG | + | chr6.4:29378791-29378810 | None:intergenic | 45.0% |
| ! | GATTGCCTTTGATTCGAGGT+CGG | + | chr6.4:29378792-29378811 | None:intergenic | 45.0% |
| ! | TAGGGGGATTTGGCATTTTG+AGG | + | chr6.4:29378685-29378704 | None:intergenic | 45.0% |
| !! | ATTTGGCATTTTGAGGGTGC+TGG | + | chr6.4:29378678-29378697 | None:intergenic | 45.0% |
| !! | CTCAAGTCTTTTTAGGCTGG+TGG | + | chr6.4:29378755-29378774 | None:intergenic | 45.0% |
| !! | GACTCTTTTGAGGGAAGCAA+AGG | - | chr6.4:29377539-29377558 | MS.gene000780:intron | 45.0% |
| !! | GTGCTGGTGGTTTTTCTTTG+GGG | + | chr6.4:29378662-29378681 | None:intergenic | 45.0% |
| !!! | CGCAACCAGTCTTTTTTTCG+CGG | + | chr6.4:29379090-29379109 | None:intergenic | 45.0% |
| !!! | GAGCTGTTTTTAGGGGGATT+TGG | + | chr6.4:29378695-29378714 | None:intergenic | 45.0% |
| !!! | GCAACCAGTCTTTTTTTCGC+GGG | + | chr6.4:29379089-29379108 | None:intergenic | 45.0% |
| !!! | GGTGCCTTTTTGACTTGTGT+CGG | + | chr6.4:29378829-29378848 | None:intergenic | 45.0% |
| !!! | GGTGCTGGTGGTTTTTCTTT+GGG | + | chr6.4:29378663-29378682 | None:intergenic | 45.0% |
| !!! | GTGCCTTTTTGACTTGTGTC+GGG | + | chr6.4:29378828-29378847 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTGAA+TGG | - | chr6.4:29378562-29378581 | MS.gene000780:intron | 5.0% |
| AGGCAAGGGAACTCTGACTT+TGG | + | chr6.4:29379008-29379027 | None:intergenic | 50.0% | |
| AGGCCTAAGAAGAAGCCTAC+GGG | + | chr6.4:29379040-29379059 | None:intergenic | 50.0% | |
| AGGTTTCTTCACCGGATACG+GGG | + | chr6.4:29379120-29379139 | None:intergenic | 50.0% | |
| ATTCCTATTCCAGATCCCGG+AGG | + | chr6.4:29378896-29378915 | None:intergenic | 50.0% | |
| CAAGGGAACTCTGACTTTGG+TGG | + | chr6.4:29379005-29379024 | None:intergenic | 50.0% | |
| CAGAGCTGAGGAATAGCTTG+AGG | + | chr6.4:29378946-29378965 | None:intergenic | 50.0% | |
| CGGCTATGAAGGCTAGCAAA+CGG | - | chr6.4:29377811-29377830 | MS.gene000780:intron | 50.0% | |
| CTAAGAAGAAGCCTACGGGT+AGG | + | chr6.4:29379036-29379055 | None:intergenic | 50.0% | |
| CTACCCGTAGGCTTCTTCTT+AGG | - | chr6.4:29379034-29379053 | MS.gene000780:intron | 50.0% | |
| GAGGCCTAAGAAGAAGCCTA+CGG | + | chr6.4:29379041-29379060 | None:intergenic | 50.0% | |
| GCATCCCGCGAAAAAAAGAC+TGG | - | chr6.4:29379082-29379101 | MS.gene000780:CDS | 50.0% | |
| GCTATGAAGGCTAGCAAACG+GGG | - | chr6.4:29377813-29377832 | MS.gene000780:intron | 50.0% | |
| GGCTATGAAGGCTAGCAAAC+GGG | - | chr6.4:29377812-29377831 | MS.gene000780:intron | 50.0% | |
| TCAGGTTTAGGTGTCTGCTC+CGG | + | chr6.4:29378869-29378888 | None:intergenic | 50.0% | |
| TCCGGTGGTTCGTGAATTGA+GGG | + | chr6.4:29378851-29378870 | None:intergenic | 50.0% | |
| TGCGAAGGAGAAAAGGAAGC+CGG | + | chr6.4:29379065-29379084 | None:intergenic | 50.0% | |
| TTCCTATTCCAGATCCCGGA+GGG | + | chr6.4:29378895-29378914 | None:intergenic | 50.0% | |
| ! | ACTTGTGTCGGGAGTCTTGT+GGG | + | chr6.4:29378817-29378836 | None:intergenic | 50.0% |
| ! | GTCAGAGTTCCCTTGCCTTT+TGG | - | chr6.4:29379010-29379029 | MS.gene000780:intron | 50.0% |
| !! | ATGGCGGTGTTGGTTCTTTG+AGG | + | chr6.4:29378717-29378736 | None:intergenic | 50.0% |
| !! | TGTGCAGTGATGGGTGTTGA+TGG | - | chr6.4:29377777-29377796 | MS.gene000780:intron | 50.0% |
| !!! | CTTTTTTTCGCGGGATGCGA+AGG | + | chr6.4:29379080-29379099 | None:intergenic | 50.0% |
| !!! | GGGTGCTGGTGGTTTTTCTT+TGG | + | chr6.4:29378664-29378683 | None:intergenic | 50.0% |
| AAGCCTACGGGTAGGCCAAA+AGG | + | chr6.4:29379028-29379047 | None:intergenic | 55.0% | |
| ACGGGTAGGCCAAAAGGCAA+GGG | + | chr6.4:29379022-29379041 | None:intergenic | 55.0% | |
| CCCCTCAATTCACGAACCAC+CGG | - | chr6.4:29378847-29378866 | MS.gene000780:CDS | 55.0% | |
| CCGGTGGTTCGTGAATTGAG+GGG | + | chr6.4:29378850-29378869 | None:intergenic | 55.0% | |
| CGAAGGAGAAAAGGAAGCCG+GGG | + | chr6.4:29379063-29379082 | None:intergenic | 55.0% | |
| CTCCGGTGGTTCGTGAATTG+AGG | + | chr6.4:29378852-29378871 | None:intergenic | 55.0% | |
| GACTTGTGTCGGGAGTCTTG+TGG | + | chr6.4:29378818-29378837 | None:intergenic | 55.0% | |
| GCGAAGGAGAAAAGGAAGCC+GGG | + | chr6.4:29379064-29379083 | None:intergenic | 55.0% | |
| GGAGCAGACACCTAAACCTG+AGG | - | chr6.4:29378868-29378887 | MS.gene000780:CDS | 55.0% | |
| TACGGGTAGGCCAAAAGGCA+AGG | + | chr6.4:29379023-29379042 | None:intergenic | 55.0% | |
| TCCTATTCCAGATCCCGGAG+GGG | + | chr6.4:29378894-29378913 | None:intergenic | 55.0% | |
| TGCTCCCGACCTCGAATCAA+AGG | - | chr6.4:29378784-29378803 | MS.gene000780:intron | 55.0% | |
| TTCTTCACCGGATACGGGGA+AGG | + | chr6.4:29379116-29379135 | None:intergenic | 55.0% | |
| ! | GGCCGATTGCCTTTGATTCG+AGG | + | chr6.4:29378796-29378815 | None:intergenic | 55.0% |
| ! | TTGCCTTTTGGCCTACCCGT+AGG | - | chr6.4:29379022-29379041 | MS.gene000780:intron | 55.0% |
| !! | TCGTTCACTGATGGCGGTGT+TGG | + | chr6.4:29378727-29378746 | None:intergenic | 55.0% |
| !!! | TGGCATTTTGAGGGTGCTGG+TGG | + | chr6.4:29378675-29378694 | None:intergenic | 55.0% |
| ACCTAAACCTGAGGCCCCTC+CGG | - | chr6.4:29378877-29378896 | MS.gene000780:CDS | 60.0% | |
| AGGAGAAAAGGAAGCCGGGG+AGG | + | chr6.4:29379060-29379079 | None:intergenic | 60.0% | |
| CGCGGGATGCGAAGGAGAAA+AGG | + | chr6.4:29379072-29379091 | None:intergenic | 60.0% | |
| GGCTTCTTCTTAGGCCTCCC+CGG | - | chr6.4:29379043-29379062 | MS.gene000780:intron | 60.0% | |
| GGTTTAGGTGTCTGCTCCGG+TGG | + | chr6.4:29378866-29378885 | None:intergenic | 60.0% | |
| TGCGACACCTTCCCCGTATC+CGG | - | chr6.4:29379106-29379125 | MS.gene000780:CDS | 60.0% | |
| CCTAAACCTGAGGCCCCTCC+GGG | - | chr6.4:29378878-29378897 | MS.gene000780:CDS | 65.0% | |
| ! | GCCCCTCCGGGATCTGGAAT+AGG | - | chr6.4:29378890-29378909 | MS.gene000780:CDS | 65.0% |
| CCCGGAGGGGCCTCAGGTTT+AGG | + | chr6.4:29378881-29378900 | None:intergenic | 70.0% | |
| CCAGATCCCGGAGGGGCCTC+AGG | + | chr6.4:29378887-29378906 | None:intergenic | 75.0% | |
| CCTGAGGCCCCTCCGGGATC+TGG | - | chr6.4:29378884-29378903 | MS.gene000780:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 29377275 | 29379171 | 29377275 | ID=MS.gene000780 |
| chr6.4 | mRNA | 29377275 | 29379171 | 29377275 | ID=MS.gene000780.t1;Parent=MS.gene000780 |
| chr6.4 | exon | 29379060 | 29379171 | 29379060 | ID=MS.gene000780.t1.exon1;Parent=MS.gene000780.t1 |
| chr6.4 | CDS | 29379060 | 29379171 | 29379060 | ID=cds.MS.gene000780.t1;Parent=MS.gene000780.t1 |
| chr6.4 | exon | 29378786 | 29378938 | 29378786 | ID=MS.gene000780.t1.exon2;Parent=MS.gene000780.t1 |
| chr6.4 | CDS | 29378786 | 29378938 | 29378786 | ID=cds.MS.gene000780.t1;Parent=MS.gene000780.t1 |
| chr6.4 | exon | 29377275 | 29377390 | 29377275 | ID=MS.gene000780.t1.exon3;Parent=MS.gene000780.t1 |
| chr6.4 | CDS | 29377275 | 29377390 | 29377275 | ID=cds.MS.gene000780.t1;Parent=MS.gene000780.t1 |
| Gene Sequence |
| Protein sequence |
