AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene000872

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000872.t1 MTR_1g006650 94.767 344 14 2 1 340 1 344 0.0 650
MS.gene000872.t1 MTR_3g109760 55.247 324 116 8 19 340 22 318 1.65e-104 309
MS.gene000872.t1 MTR_8g013950 46.884 337 131 12 23 340 35 342 5.79e-78 242
MS.gene000872.t1 MTR_8g076340 47.317 205 90 5 96 300 102 288 1.74e-46 159
MS.gene000872.t1 MTR_4g071590 34.615 312 141 10 5 299 15 280 6.74e-43 150
MS.gene000872.t1 MTR_4g471590 34.615 312 141 10 5 299 15 280 6.74e-43 150
MS.gene000872.t1 MTR_6g032830 39.732 224 101 6 107 296 35 258 6.77e-41 144
MS.gene000872.t1 MTR_5g021340 44.156 231 95 7 94 300 150 370 3.74e-39 143
MS.gene000872.t1 MTR_1g094930 35.463 313 142 11 27 294 9 306 1.46e-37 137
MS.gene000872.t1 MTR_3g117380 37.209 215 117 3 87 300 102 299 3.05e-37 136
MS.gene000872.t1 MTR_1g046680 78.873 71 15 0 229 299 171 241 9.79e-35 127
MS.gene000872.t1 MTR_7g085410 39.370 254 110 10 73 294 11 252 1.02e-34 128
MS.gene000872.t1 MTR_5g007600 74.648 71 18 0 229 299 258 328 4.68e-33 125
MS.gene000872.t1 MTR_5g007600 39.234 209 94 4 101 300 43 227 5.88e-29 114
MS.gene000872.t1 MTR_1g094930 78.462 65 14 0 230 294 147 211 1.10e-32 122
MS.gene000872.t1 MTR_1g116010 55.963 109 43 2 209 316 142 246 6.31e-32 120
MS.gene000872.t1 MTR_2g094600 76.923 65 15 0 230 294 216 280 1.75e-31 120
MS.gene000872.t1 MTR_4g058910 73.134 67 18 0 230 296 314 380 2.93e-30 119
MS.gene000872.t1 MTR_7g446110 62.903 62 23 0 230 291 187 248 3.65e-21 91.3
MS.gene000872.t1 MTR_7g445950 32.124 193 90 6 99 291 30 181 3.31e-19 84.3
MS.gene000872.t1 MTR_7g446070 33.495 206 105 8 88 291 18 193 6.44e-19 84.0
MS.gene000872.t1 MTR_7g445980 62.712 59 21 1 234 291 37 95 1.47e-18 80.1
MS.gene000872.t1 MTR_7g112330 70.588 34 10 0 232 265 24 57 2.80e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000872.t1 AT5G25830 56.981 265 97 7 93 340 67 331 6.29e-92 278
MS.gene000872.t1 AT4G32890 43.881 335 131 9 21 340 16 308 5.30e-80 246
MS.gene000872.t1 AT3G60530 48.309 207 63 6 93 298 63 226 3.63e-49 165
MS.gene000872.t1 AT2G45050 43.277 238 79 7 89 310 60 257 8.41e-49 165
MS.gene000872.t1 AT5G66320 38.519 270 116 8 69 312 86 331 3.61e-39 142
MS.gene000872.t1 AT5G66320 38.519 270 116 8 69 312 86 331 3.61e-39 142
MS.gene000872.t1 AT4G36240 37.544 285 106 9 22 297 10 231 6.03e-39 138
MS.gene000872.t1 AT4G34680 38.710 217 82 5 90 299 77 249 1.39e-36 133
MS.gene000872.t1 AT4G34680 38.710 217 82 5 90 299 77 249 1.39e-36 133
MS.gene000872.t1 AT3G51080 34.304 309 157 10 6 298 11 289 3.10e-34 128
MS.gene000872.t1 AT3G24050 74.286 70 18 0 229 298 193 262 2.58e-33 124
MS.gene000872.t1 AT1G08010 65.476 84 23 1 225 302 215 298 3.74e-33 125
MS.gene000872.t1 AT1G08010 65.476 84 23 1 225 302 215 298 3.74e-33 125
MS.gene000872.t1 AT1G08010 65.476 84 23 1 225 302 215 298 3.74e-33 125
MS.gene000872.t1 AT1G08000 70.833 72 21 0 225 296 213 284 3.52e-31 120
MS.gene000872.t1 AT1G08000 70.833 72 21 0 225 296 213 284 3.52e-31 120
MS.gene000872.t1 AT3G54810 62.963 81 30 0 230 310 229 309 6.24e-31 119
MS.gene000872.t1 AT3G54810 62.963 81 30 0 230 310 229 309 6.24e-31 119
MS.gene000872.t1 AT2G28340 69.841 63 19 0 232 294 193 255 1.32e-26 107
MS.gene000872.t1 AT3G45170 64.179 67 24 0 232 298 117 183 2.63e-26 104

Find 117 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTCACTGTCCTTTCTTCT+TGG 0.090798 1.1:+12491279 None:intergenic
CCAATATCAGGAACGACATT+AGG 0.287162 1.1:+12492146 None:intergenic
GCAGTCTTTGCCTGCTTCCT+TGG 0.291400 1.1:+12491303 None:intergenic
TACTCTGATGTTGTAAAATC+TGG 0.292416 1.1:+12491001 None:intergenic
TATATTCAACAAGGAAGTTT+TGG 0.298704 1.1:-12491469 MS.gene000872:CDS
CTAGCTGCAGGCCTGTATTC+AGG 0.333508 1.1:+12491123 None:intergenic
CTCCGGAGACCTGTGTGTTC+CGG 0.345236 1.1:-12492096 MS.gene000872:intron
CAAAAGATGCAACTGATATC+AGG 0.358334 1.1:-12491555 MS.gene000872:CDS
CCTAATGTCGTTCCTGATAT+TGG 0.361673 1.1:-12492146 MS.gene000872:CDS
AAAACTTCCTTGTTGAATAT+AGG 0.362486 1.1:+12491471 None:intergenic
GAAATAGGAGGATGCTTTAC+GGG 0.365602 1.1:-12491631 MS.gene000872:intron
CGACGTCATTGTTGAGGTTA+AGG 0.370723 1.1:+12492291 None:intergenic
TGTTGAATATAGGACTGTTT+CGG 0.382615 1.1:+12491481 None:intergenic
AAGACACCACAATGGCGAAC+CGG 0.386976 1.1:-12491210 MS.gene000872:CDS
ACGATGCGAGTTGGAGTGTT+TGG 0.387998 1.1:+12491083 None:intergenic
AAATTCTGACAGCCAATATC+AGG 0.389939 1.1:+12492134 None:intergenic
TGAAATAGGAGGATGCTTTA+CGG 0.392306 1.1:-12491632 MS.gene000872:intron
TTACTTGATTCACCAACATA+TGG 0.405233 1.1:-12490950 MS.gene000872:CDS
AGGACTGTTTCGGTTGGGTT+GGG 0.406165 1.1:+12491491 None:intergenic
GTTGGGTTGGGAAAGCTCAC+GGG 0.412320 1.1:+12491503 None:intergenic
CAATGGCGAACCGGGCCTAA+TGG 0.414512 1.1:-12491201 MS.gene000872:CDS
CACACAGGTCTCCGGAGAAA+TGG 0.416213 1.1:+12492102 None:intergenic
CACGGTAACGGTGGAGGAAG+AGG 0.434827 1.1:+12492208 None:intergenic
CAATATCAGGAACGACATTA+GGG 0.440367 1.1:+12492147 None:intergenic
CTCTTGCTACGGGCCTTAGC+TGG 0.442400 1.1:+12491444 None:intergenic
TGTCGGAGGAAAAGGTGGTT+TGG 0.443866 1.1:+12492348 None:intergenic
GGTTGGGTTGGGAAAGCTCA+CGG 0.448750 1.1:+12491502 None:intergenic
TACATCATCTGCCTAAAATC+AGG 0.450652 1.1:+12490925 None:intergenic
GCTCACGGGGTTCTTCGTCC+TGG 0.451765 1.1:+12491517 None:intergenic
AATATAGGACTGTTTCGGTT+GGG 0.459476 1.1:+12491486 None:intergenic
TAGGACTGTTTCGGTTGGGT+TGG 0.462649 1.1:+12491490 None:intergenic
AGTGTTGTTGTCGGAGGAAA+AGG 0.462952 1.1:+12492340 None:intergenic
AAGGACAGTGACGGAGGGTC+AGG 0.466229 1.1:-12491270 MS.gene000872:CDS
GAGGCAGAAGGAAATGTTGC+GGG 0.466463 1.1:-12491043 MS.gene000872:CDS
TACTTGATTCACCAACATAT+GGG 0.466490 1.1:-12490949 MS.gene000872:CDS
CAACATTGGAAAGCCATTCC+AGG 0.469957 1.1:+12491607 None:intergenic
GTCGATTGGTGCCTGAATAC+AGG 0.470023 1.1:-12491134 MS.gene000872:CDS
AGACACCACAATGGCGAACC+GGG 0.471491 1.1:-12491209 MS.gene000872:CDS
GCCCACGAGTCCTCTTGCTA+CGG 0.473059 1.1:+12491433 None:intergenic
GGAGGATGCTTTACGGGACC+TGG 0.481852 1.1:-12491625 MS.gene000872:CDS
GAATATAGGACTGTTTCGGT+TGG 0.481982 1.1:+12491485 None:intergenic
GTTAGCTCGTCATCATTGTC+CGG 0.486841 1.1:-12492176 MS.gene000872:CDS
ATGCTTTACGGGACCTGGAA+TGG 0.494601 1.1:-12491620 MS.gene000872:CDS
GACGTGAGCTCCAGTCGCAA+GGG 0.498267 1.1:+12491409 None:intergenic
AATCAAGTAATCATCATTGT+TGG 0.499207 1.1:+12490963 None:intergenic
TGTTTGGTCAGCACAAATGT+AGG 0.504596 1.1:+12491099 None:intergenic
ATCGTAAAGTGTTGGAGCTA+CGG 0.505579 1.1:-12491065 MS.gene000872:CDS
AAGGTTGGTGTCGGAAATGA+TGG 0.507635 1.1:+12492256 None:intergenic
ACAGTGATGGTAGGTAAGGC+GGG 0.516162 1.1:+12491327 None:intergenic
GGTGGTTTGGAAAATGTTGT+TGG 0.523159 1.1:+12492361 None:intergenic
TACCGACAATTTCATTGTTG+AGG 0.524862 1.1:-12492318 MS.gene000872:CDS
AAACGATTCCTCAACAACAT+TGG 0.525151 1.1:+12491593 None:intergenic
TACCGGAACACACAGGTCTC+CGG 0.525459 1.1:+12492094 None:intergenic
ATTGACCACGGTAACGGTGG+AGG 0.527850 1.1:+12492202 None:intergenic
GCCCGTAGCAAGAGGACTCG+TGG 0.533598 1.1:-12491435 MS.gene000872:CDS
AAGATACAAGTCGGGTCGAT+TGG 0.534399 1.1:-12491148 MS.gene000872:CDS
TTCCGACACCAACCTTGACT+CGG 0.534554 1.1:-12492249 MS.gene000872:CDS
AGGCATGAAGGTGCGAAACC+AGG 0.535516 1.1:-12491535 MS.gene000872:CDS
CCCACGAGTCCTCTTGCTAC+GGG 0.537511 1.1:+12491434 None:intergenic
GACGGAGGGTCAGGTGGAGA+TGG 0.539597 1.1:-12491261 MS.gene000872:CDS
GTTGTTGTCGGAGGAAAAGG+TGG 0.541025 1.1:+12492343 None:intergenic
GAGGGTCAGGTGGAGATGGT+CGG 0.544742 1.1:-12491257 MS.gene000872:CDS
CTGCTTCCTTGGAACAGTGA+TGG 0.548423 1.1:+12491314 None:intergenic
CAACACTTTACGATGCGAGT+TGG 0.550252 1.1:+12491074 None:intergenic
TGGAACAGTGATGGTAGGTA+AGG 0.550597 1.1:+12491323 None:intergenic
CATCACTGTTCCAAGGAAGC+AGG 0.554828 1.1:-12491313 MS.gene000872:CDS
AAAGACTGCTCCAAGAAGAA+AGG 0.555772 1.1:-12491289 MS.gene000872:CDS
AACGCTATTGACCACGGTAA+CGG 0.557909 1.1:+12492196 None:intergenic
GACAGTGACGGAGGGTCAGG+TGG 0.558691 1.1:-12491267 MS.gene000872:CDS
ACAAATGTAGGGCTAGCTGC+AGG 0.560737 1.1:+12491111 None:intergenic
AGACGTGAGCTCCAGTCGCA+AGG 0.560751 1.1:+12491408 None:intergenic
GTCCTCAACAATGAAATTGT+CGG 0.566137 1.1:+12492316 None:intergenic
AACAGTGATGGTAGGTAAGG+CGG 0.571647 1.1:+12491326 None:intergenic
TAAAATCAGGTCCCATATGT+TGG 0.573858 1.1:+12490938 None:intergenic
GTTTGGTCAGCACAAATGTA+GGG 0.574012 1.1:+12491100 None:intergenic
CCCGTAGCAAGAGGACTCGT+GGG 0.574146 1.1:-12491434 MS.gene000872:CDS
TTGGGTTGGGAAAGCTCACG+GGG 0.578980 1.1:+12491504 None:intergenic
CAGCTAAGGCCCGTAGCAAG+AGG 0.579929 1.1:-12491443 MS.gene000872:CDS
GGCCGAGTCAAGGTTGGTGT+CGG 0.584263 1.1:+12492247 None:intergenic
TTAGGCCCGGTTCGCCATTG+TGG 0.587065 1.1:+12491204 None:intergenic
TTAGCTCGTCATCATTGTCC+GGG 0.587117 1.1:-12492175 MS.gene000872:CDS
GCAACTGATATCAGGCATGA+AGG 0.589173 1.1:-12491547 MS.gene000872:CDS
TTGTGGTGTAAGATACAAGT+CGG 0.589234 1.1:-12491157 MS.gene000872:CDS
AGTTGACTGTGGCCGAGTCA+AGG 0.589310 1.1:+12492237 None:intergenic
ATTCCCTACGTAGGAATGGA+AGG 0.590186 1.1:-12492389 None:intergenic
ATTGTCGGTAGTGTTGTTGT+CGG 0.590207 1.1:+12492331 None:intergenic
GGTCAGGTGGAGATGGTCGG+AGG 0.590443 1.1:-12491254 MS.gene000872:CDS
GTCGGTAGTGTTGTTGTCGG+AGG 0.590547 1.1:+12492334 None:intergenic
TACCTACCATCACTGTTCCA+AGG 0.594004 1.1:-12491320 MS.gene000872:CDS
CGTCGTCGACGTCATTGTTG+AGG 0.596242 1.1:+12492285 None:intergenic
ATGGCTTTCCAATGTTGTTG+AGG 0.597478 1.1:-12491601 MS.gene000872:CDS
AACGACATTAGGGTCGCACC+CGG 0.603894 1.1:+12492157 None:intergenic
CAACTCGCATCGTAAAGTGT+TGG 0.604228 1.1:-12491073 MS.gene000872:CDS
CTCTTCCTCCACCGTTACCG+TGG 0.606184 1.1:-12492207 MS.gene000872:CDS
TGTGGTGTAAGATACAAGTC+GGG 0.608929 1.1:-12491156 MS.gene000872:CDS
GTTGGAGCTACGGAGGCAGA+AGG 0.611025 1.1:-12491055 MS.gene000872:CDS
CGTCATTGTTGAGGTTAAGG+AGG 0.612987 1.1:+12492294 None:intergenic
GACTGTGGCCGAGTCAAGGT+TGG 0.614521 1.1:+12492241 None:intergenic
ACGTGAGCTCCAGTCGCAAG+GGG 0.619626 1.1:+12491410 None:intergenic
GCTATTGACCACGGTAACGG+TGG 0.631846 1.1:+12492199 None:intergenic
GAAGAAAGGACAGTGACGGA+GGG 0.637953 1.1:-12491275 MS.gene000872:CDS
AAAACATTATGCAACGCTTG+TGG 0.638941 1.1:-12491174 MS.gene000872:CDS
CCAAGAAGAAAGGACAGTGA+CGG 0.640630 1.1:-12491279 MS.gene000872:CDS
AGAAGAAAGGACAGTGACGG+AGG 0.643844 1.1:-12491276 MS.gene000872:CDS
TTCCTTGGAACAGTGATGGT+AGG 0.661750 1.1:+12491318 None:intergenic
AGTGATGGTAGGTAAGGCGG+GGG 0.663791 1.1:+12491329 None:intergenic
GTAAAGTGTTGGAGCTACGG+AGG 0.667005 1.1:-12491062 MS.gene000872:CDS
CAGTGATGGTAGGTAAGGCG+GGG 0.673174 1.1:+12491328 None:intergenic
GGAGGCAGAAGGAAATGTTG+CGG 0.675658 1.1:-12491044 MS.gene000872:CDS
AGTTCTGACTCAGAAGAAGA+CGG 0.679246 1.1:+12491363 None:intergenic
GGTAACGGTGGAGGAAGAGG+CGG 0.684503 1.1:+12492211 None:intergenic
TATAATATACCGGAACACAC+AGG 0.691414 1.1:+12492087 None:intergenic
AAACAGTCCTATATTCAACA+AGG 0.707758 1.1:-12491478 MS.gene000872:CDS
CGAGCTAACGCTATTGACCA+CGG 0.719172 1.1:+12492190 None:intergenic
CGTGAGCTCCAGTCGCAAGG+GGG 0.723454 1.1:+12491411 None:intergenic
TGACAGACAAGACACCACAA+TGG 0.724676 1.1:-12491218 MS.gene000872:CDS
AGAGGCGGTTGAGTTGACTG+TGG 0.744548 1.1:+12492226 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATACACATATAATATAC+CGG + chr1.1:12491224-12491243 None:intergenic 20.0%
!!! TTTGTGTTGAAATTTGAAAT+AGG - chr1.1:12491652-12491671 MS.gene000872:intron 20.0%
! AAAACTTCCTTGTTGAATAT+AGG + chr1.1:12491830-12491849 None:intergenic 25.0%
! AATCAAGTAATCATCATTGT+TGG + chr1.1:12492338-12492357 None:intergenic 25.0%
! CTGAAATTATTGGCAAAAAA+GGG + chr1.1:12491405-12491424 None:intergenic 25.0%
!! TATATTCAACAAGGAAGTTT+TGG - chr1.1:12491829-12491848 MS.gene000872:intron 25.0%
!!! GTTTTTTCTCCTGAAATTAT+TGG + chr1.1:12491415-12491434 None:intergenic 25.0%
AAACAGTCCTATATTCAACA+AGG - chr1.1:12491820-12491839 MS.gene000872:intron 30.0%
CCTGAAATTATTGGCAAAAA+AGG + chr1.1:12491406-12491425 None:intergenic 30.0%
TACTCTGATGTTGTAAAATC+TGG + chr1.1:12492300-12492319 None:intergenic 30.0%
TACTTGATTCACCAACATAT+GGG - chr1.1:12492349-12492368 MS.gene000872:CDS 30.0%
TAGGCTAAATACAACAGAAT+GGG - chr1.1:12491442-12491461 MS.gene000872:CDS 30.0%
TGTTGAATATAGGACTGTTT+CGG + chr1.1:12491820-12491839 None:intergenic 30.0%
TTACTTGATTCACCAACATA+TGG - chr1.1:12492348-12492367 MS.gene000872:CDS 30.0%
! GCATGAGTTAGAAATTTTCA+TGG + chr1.1:12491340-12491359 None:intergenic 30.0%
! GTGTTGAAATTTGAAATAGG+AGG - chr1.1:12491655-12491674 MS.gene000872:intron 30.0%
! TGTTTCAAGAGCATATATAG+AGG - chr1.1:12491618-12491637 MS.gene000872:CDS 30.0%
!!! CCTTTTTTGCCAATAATTTC+AGG - chr1.1:12491403-12491422 MS.gene000872:CDS 30.0%
!!! GTTGTAAAATCTGGTTTTGT+TGG + chr1.1:12492291-12492310 None:intergenic 30.0%
AAAACATTATGCAACGCTTG+TGG - chr1.1:12492124-12492143 MS.gene000872:CDS 35.0%
AAACGATTCCTCAACAACAT+TGG + chr1.1:12491708-12491727 None:intergenic 35.0%
AAATTCTGACAGCCAATATC+AGG + chr1.1:12491167-12491186 None:intergenic 35.0%
AATATAGGACTGTTTCGGTT+GGG + chr1.1:12491815-12491834 None:intergenic 35.0%
AGGAGAAAAAACAACTAGCT+AGG - chr1.1:12491423-12491442 MS.gene000872:CDS 35.0%
AGGCTAAATACAACAGAATG+GGG - chr1.1:12491443-12491462 MS.gene000872:CDS 35.0%
CAAAAGATGCAACTGATATC+AGG - chr1.1:12491743-12491762 MS.gene000872:intron 35.0%
CAATATCAGGAACGACATTA+GGG + chr1.1:12491154-12491173 None:intergenic 35.0%
CTAGGCTAAATACAACAGAA+TGG - chr1.1:12491441-12491460 MS.gene000872:CDS 35.0%
GTCCTCAACAATGAAATTGT+CGG + chr1.1:12490985-12491004 None:intergenic 35.0%
TAAAATCAGGTCCCATATGT+TGG + chr1.1:12492363-12492382 None:intergenic 35.0%
TACATCATCTGCCTAAAATC+AGG + chr1.1:12492376-12492395 None:intergenic 35.0%
TACCGACAATTTCATTGTTG+AGG - chr1.1:12490980-12490999 MS.gene000872:CDS 35.0%
TATAATATACCGGAACACAC+AGG + chr1.1:12491214-12491233 None:intergenic 35.0%
TGAAATAGGAGGATGCTTTA+CGG - chr1.1:12491666-12491685 MS.gene000872:intron 35.0%
TTGTGGTGTAAGATACAAGT+CGG - chr1.1:12492141-12492160 MS.gene000872:CDS 35.0%
! AACATATGGGACCTGATTTT+AGG - chr1.1:12492362-12492381 MS.gene000872:CDS 35.0%
!! AAGCGTTGCATAATGTTTTC+GGG + chr1.1:12492123-12492142 None:intergenic 35.0%
!! CAAGCGTTGCATAATGTTTT+CGG + chr1.1:12492124-12492143 None:intergenic 35.0%
!!! AAATCTGGTTTTGTTGGTGT+TGG + chr1.1:12492285-12492304 None:intergenic 35.0%
AAAGACTGCTCCAAGAAGAA+AGG - chr1.1:12492009-12492028 MS.gene000872:intron 40.0%
ATGGCTTTCCAATGTTGTTG+AGG - chr1.1:12491697-12491716 MS.gene000872:intron 40.0%
CCAATATCAGGAACGACATT+AGG + chr1.1:12491155-12491174 None:intergenic 40.0%
CCTAATGTCGTTCCTGATAT+TGG - chr1.1:12491152-12491171 MS.gene000872:CDS 40.0%
GAAATAGGAGGATGCTTTAC+GGG - chr1.1:12491667-12491686 MS.gene000872:intron 40.0%
GAATATAGGACTGTTTCGGT+TGG + chr1.1:12491816-12491835 None:intergenic 40.0%
GTTTGGTCAGCACAAATGTA+GGG + chr1.1:12492201-12492220 None:intergenic 40.0%
TGTGGTGTAAGATACAAGTC+GGG - chr1.1:12492142-12492161 MS.gene000872:CDS 40.0%
TGTTTGGTCAGCACAAATGT+AGG + chr1.1:12492202-12492221 None:intergenic 40.0%
! AGTTCTGACTCAGAAGAAGA+CGG + chr1.1:12491938-12491957 None:intergenic 40.0%
! ATTGTCGGTAGTGTTGTTGT+CGG + chr1.1:12490970-12490989 None:intergenic 40.0%
! GGTGGTTTGGAAAATGTTGT+TGG + chr1.1:12490940-12490959 None:intergenic 40.0%
! TTTTCTGACAGCCATTTCTC+CGG - chr1.1:12491185-12491204 MS.gene000872:CDS 40.0%
!! ATCGTAAAGTGTTGGAGCTA+CGG - chr1.1:12492233-12492252 MS.gene000872:CDS 40.0%
!! CATAATGTTTTCGGGCCATT+AGG + chr1.1:12492115-12492134 None:intergenic 40.0%
AACAGTGATGGTAGGTAAGG+CGG + chr1.1:12491975-12491994 None:intergenic 45.0%
AACGCTATTGACCACGGTAA+CGG + chr1.1:12491105-12491124 None:intergenic 45.0%
AAGATACAAGTCGGGTCGAT+TGG - chr1.1:12492150-12492169 MS.gene000872:CDS 45.0%
ACAGAATGGGGCACATTTCA+CGG - chr1.1:12491455-12491474 MS.gene000872:CDS 45.0%
CAACACTTTACGATGCGAGT+TGG + chr1.1:12492227-12492246 None:intergenic 45.0%
CAACATTGGAAAGCCATTCC+AGG + chr1.1:12491694-12491713 None:intergenic 45.0%
CAACTCGCATCGTAAAGTGT+TGG - chr1.1:12492225-12492244 MS.gene000872:CDS 45.0%
CCAAGAAGAAAGGACAGTGA+CGG - chr1.1:12492019-12492038 MS.gene000872:intron 45.0%
CGACGTCATTGTTGAGGTTA+AGG + chr1.1:12491010-12491029 None:intergenic 45.0%
CGTCATTGTTGAGGTTAAGG+AGG + chr1.1:12491007-12491026 None:intergenic 45.0%
GCAACTGATATCAGGCATGA+AGG - chr1.1:12491751-12491770 MS.gene000872:intron 45.0%
GTTAGCTCGTCATCATTGTC+CGG - chr1.1:12491122-12491141 MS.gene000872:CDS 45.0%
TACCTACCATCACTGTTCCA+AGG - chr1.1:12491978-12491997 MS.gene000872:intron 45.0%
TGACAGACAAGACACCACAA+TGG - chr1.1:12492080-12492099 MS.gene000872:intron 45.0%
TGGAACAGTGATGGTAGGTA+AGG + chr1.1:12491978-12491997 None:intergenic 45.0%
TTAGCTCGTCATCATTGTCC+GGG - chr1.1:12491123-12491142 MS.gene000872:CDS 45.0%
TTCCTTGGAACAGTGATGGT+AGG + chr1.1:12491983-12492002 None:intergenic 45.0%
! AGTGTTGTTGTCGGAGGAAA+AGG + chr1.1:12490961-12490980 None:intergenic 45.0%
!! AAGGTTGGTGTCGGAAATGA+TGG + chr1.1:12491045-12491064 None:intergenic 45.0%
!! TGAGGAATCGTTTTCAAGCG+AGG - chr1.1:12491715-12491734 MS.gene000872:intron 45.0%
!!! GGAAGTTTTGGTTCCAGCTA+AGG - chr1.1:12491841-12491860 MS.gene000872:intron 45.0%
AAGACACCACAATGGCGAAC+CGG - chr1.1:12492088-12492107 MS.gene000872:intron 50.0%
ACAGTGATGGTAGGTAAGGC+GGG + chr1.1:12491974-12491993 None:intergenic 50.0%
AGAAGAAAGGACAGTGACGG+AGG - chr1.1:12492022-12492041 MS.gene000872:intron 50.0%
AGGACTGTTTCGGTTGGGTT+GGG + chr1.1:12491810-12491829 None:intergenic 50.0%
ATGCTTTACGGGACCTGGAA+TGG - chr1.1:12491678-12491697 MS.gene000872:intron 50.0%
CATCACTGTTCCAAGGAAGC+AGG - chr1.1:12491985-12492004 MS.gene000872:intron 50.0%
CCGTCACTGTCCTTTCTTCT+TGG + chr1.1:12492022-12492041 None:intergenic 50.0%
CGAGCTAACGCTATTGACCA+CGG + chr1.1:12491111-12491130 None:intergenic 50.0%
CTGCTTCCTTGGAACAGTGA+TGG + chr1.1:12491987-12492006 None:intergenic 50.0%
GAGGCAGAAGGAAATGTTGC+GGG - chr1.1:12492255-12492274 MS.gene000872:CDS 50.0%
GGAGGCAGAAGGAAATGTTG+CGG - chr1.1:12492254-12492273 MS.gene000872:CDS 50.0%
GTTGTTGTCGGAGGAAAAGG+TGG + chr1.1:12490958-12490977 None:intergenic 50.0%
TAGGACTGTTTCGGTTGGGT+TGG + chr1.1:12491811-12491830 None:intergenic 50.0%
TGTCGGAGGAAAAGGTGGTT+TGG + chr1.1:12490953-12490972 None:intergenic 50.0%
TTCCGACACCAACCTTGACT+CGG - chr1.1:12491049-12491068 MS.gene000872:CDS 50.0%
! ACGATGCGAGTTGGAGTGTT+TGG + chr1.1:12492218-12492237 None:intergenic 50.0%
! GAAGAAAGGACAGTGACGGA+GGG - chr1.1:12492023-12492042 MS.gene000872:intron 50.0%
! GTCGATTGGTGCCTGAATAC+AGG - chr1.1:12492164-12492183 MS.gene000872:CDS 50.0%
!! ACAAATGTAGGGCTAGCTGC+AGG + chr1.1:12492190-12492209 None:intergenic 50.0%
!! GTAAAGTGTTGGAGCTACGG+AGG - chr1.1:12492236-12492255 MS.gene000872:CDS 50.0%
AACGACATTAGGGTCGCACC+CGG + chr1.1:12491144-12491163 None:intergenic 55.0%
AGACACCACAATGGCGAACC+GGG - chr1.1:12492089-12492108 MS.gene000872:intron 55.0%
AGTGATGGTAGGTAAGGCGG+GGG + chr1.1:12491972-12491991 None:intergenic 55.0%
AGTTGACTGTGGCCGAGTCA+AGG + chr1.1:12491064-12491083 None:intergenic 55.0%
CACACAGGTCTCCGGAGAAA+TGG + chr1.1:12491199-12491218 None:intergenic 55.0%
CAGTGATGGTAGGTAAGGCG+GGG + chr1.1:12491973-12491992 None:intergenic 55.0%
CGTCGTCGACGTCATTGTTG+AGG + chr1.1:12491016-12491035 None:intergenic 55.0%
CTAGCTGCAGGCCTGTATTC+AGG + chr1.1:12492178-12492197 None:intergenic 55.0%
GCAGTCTTTGCCTGCTTCCT+TGG + chr1.1:12491998-12492017 None:intergenic 55.0%
TACCGGAACACACAGGTCTC+CGG + chr1.1:12491207-12491226 None:intergenic 55.0%
! AGGCATGAAGGTGCGAAACC+AGG - chr1.1:12491763-12491782 MS.gene000872:intron 55.0%
! ATTGACCACGGTAACGGTGG+AGG + chr1.1:12491099-12491118 None:intergenic 55.0%
! GCTATTGACCACGGTAACGG+TGG + chr1.1:12491102-12491121 None:intergenic 55.0%
! GTCGGTAGTGTTGTTGTCGG+AGG + chr1.1:12490967-12490986 None:intergenic 55.0%
!! AGAGGCGGTTGAGTTGACTG+TGG + chr1.1:12491075-12491094 None:intergenic 55.0%
!! GGTTGGGTTGGGAAAGCTCA+CGG + chr1.1:12491799-12491818 None:intergenic 55.0%
!! GTTGGGTTGGGAAAGCTCAC+GGG + chr1.1:12491798-12491817 None:intergenic 55.0%
!! TGTTTTCGGGCCATTAGGCC+CGG + chr1.1:12492110-12492129 None:intergenic 55.0%
!! TTGGGTTGGGAAAGCTCACG+GGG + chr1.1:12491797-12491816 None:intergenic 55.0%
ACGTGAGCTCCAGTCGCAAG+GGG + chr1.1:12491891-12491910 None:intergenic 60.0%
AGACGTGAGCTCCAGTCGCA+AGG + chr1.1:12491893-12491912 None:intergenic 60.0%
ATGGTAGGTAAGGCGGGGGT+AGG + chr1.1:12491968-12491987 None:intergenic 60.0%
CAATGGCGAACCGGGCCTAA+TGG - chr1.1:12492097-12492116 MS.gene000872:CDS 60.0%
CAGCTAAGGCCCGTAGCAAG+AGG - chr1.1:12491855-12491874 MS.gene000872:intron 60.0%
CCCACGAGTCCTCTTGCTAC+GGG + chr1.1:12491867-12491886 None:intergenic 60.0%
CCCGTAGCAAGAGGACTCGT+GGG - chr1.1:12491864-12491883 MS.gene000872:intron 60.0%
CTCCGGAGACCTGTGTGTTC+CGG - chr1.1:12491202-12491221 MS.gene000872:CDS 60.0%
CTCTTCCTCCACCGTTACCG+TGG - chr1.1:12491091-12491110 MS.gene000872:CDS 60.0%
CTCTTGCTACGGGCCTTAGC+TGG + chr1.1:12491857-12491876 None:intergenic 60.0%
GACGTGAGCTCCAGTCGCAA+GGG + chr1.1:12491892-12491911 None:intergenic 60.0%
GACTGTGGCCGAGTCAAGGT+TGG + chr1.1:12491060-12491079 None:intergenic 60.0%
GAGGGTCAGGTGGAGATGGT+CGG - chr1.1:12492041-12492060 MS.gene000872:intron 60.0%
GCCCACGAGTCCTCTTGCTA+CGG + chr1.1:12491868-12491887 None:intergenic 60.0%
GGAGGATGCTTTACGGGACC+TGG - chr1.1:12491673-12491692 MS.gene000872:intron 60.0%
GTTGGAGCTACGGAGGCAGA+AGG - chr1.1:12492243-12492262 MS.gene000872:CDS 60.0%
! AAGGACAGTGACGGAGGGTC+AGG - chr1.1:12492028-12492047 MS.gene000872:intron 60.0%
! CACGGTAACGGTGGAGGAAG+AGG + chr1.1:12491093-12491112 None:intergenic 60.0%
! GGTAACGGTGGAGGAAGAGG+CGG + chr1.1:12491090-12491109 None:intergenic 60.0%
! TTAGGCCCGGTTCGCCATTG+TGG + chr1.1:12492097-12492116 None:intergenic 60.0%
!! GGCCGAGTCAAGGTTGGTGT+CGG + chr1.1:12491054-12491073 None:intergenic 60.0%
CGTGAGCTCCAGTCGCAAGG+GGG + chr1.1:12491890-12491909 None:intergenic 65.0%
GACGGAGGGTCAGGTGGAGA+TGG - chr1.1:12492037-12492056 MS.gene000872:intron 65.0%
GCCCGTAGCAAGAGGACTCG+TGG - chr1.1:12491863-12491882 MS.gene000872:intron 65.0%
GCTCACGGGGTTCTTCGTCC+TGG + chr1.1:12491784-12491803 None:intergenic 65.0%
GGTCAGGTGGAGATGGTCGG+AGG - chr1.1:12492044-12492063 MS.gene000872:intron 65.0%
! GACAGTGACGGAGGGTCAGG+TGG - chr1.1:12492031-12492050 MS.gene000872:intron 65.0%
CTCGTGGGCCCCCTTGCGAC+TGG - chr1.1:12491879-12491898 MS.gene000872:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 12490924 12492396 12490924 ID=MS.gene000872
chr1.1 mRNA 12490924 12492396 12490924 ID=MS.gene000872.t1;Parent=MS.gene000872
chr1.1 exon 12492097 12492396 12492097 ID=MS.gene000872.t1.exon1;Parent=MS.gene000872.t1
chr1.1 CDS 12492097 12492396 12492097 ID=cds.MS.gene000872.t1;Parent=MS.gene000872.t1
chr1.1 exon 12490924 12491646 12490924 ID=MS.gene000872.t1.exon2;Parent=MS.gene000872.t1
chr1.1 CDS 12490924 12491646 12490924 ID=cds.MS.gene000872.t1;Parent=MS.gene000872.t1
Gene Sequence

>MS.gene000872

ATGGAAGGCACGACCAACAACATTTTCCAAACCACCTTTTCCTCCGACAACAACACTACCGACAATTTCATTGTTGAGGACCTCCTTAACCTCAACAATGACGTCGACGACGACGCTACCATCATTTCCGACACCAACCTTGACTCGGCCACAGTCAACTCAACCGCCTCTTCCTCCACCGTTACCGTGGTCAATAGCGTTAGCTCGTCATCATTGTCCGGGTGCGACCCTAATGTCGTTCCTGATATTGGCTGTCAGAATTTTTCTGACAGCCATTTCTCCGGAGACCTGTGTGTTCCGGTATATTATATGTGTATATGCATTATCAATTATTATCTTTTTAAAAAAATATAAAAAGCACATAGACACTTCACAATTTTCTAACTCGTTTAATTTGACTTTTTCTATTAGTTCCATGAAAATTTCTAACTCATGCACGTATAACATATAACATCACATTGCATTTGAAGATTTTGAACCCTTTTTTGCCAATAATTTCAGGAGAAAAAACAACTAGCTAGGCTAAATACAACAGAATGGGGCACATTTCACGGTTCGAAAACTAAATTTTATTGCAACATTTGTTTCAATTATTACGAAATTATTGAGCATCACAAAAATAGTACACGTGAAAGCATTACTATGACTATGAACAAAAAATGTGTATGATTGATTACTTGTGTACAATGTAATATGTTTCAAGAGCATATATAGAGGAATAATTATTGTTTGTGTTGAAATTTGAAATAGGAGGATGCTTTACGGGACCTGGAATGGCTTTCCAATGTTGTTGAGGAATCGTTTTCAAGCGAGGATCTTCAAAAGATGCAACTGATATCAGGCATGAAGGTGCGAAACCAGGACGAAGAACCCCGTGAGCTTTCCCAACCCAACCGAAACAGTCCTATATTCAACAAGGAAGTTTTGGTTCCAGCTAAGGCCCGTAGCAAGAGGACTCGTGGGCCCCCTTGCGACTGGAGCTCACGTCTTCTTGTTTTGTCTCAAACAACACCGTCTTCTTCTGAGTCAGAACTTCTTATTCCTACCCCCGCCTTACCTACCATCACTGTTCCAAGGAAGCAGGCAAAGACTGCTCCAAGAAGAAAGGACAGTGACGGAGGGTCAGGTGGAGATGGTCGGAGGTGTCTGCATTGCATGACAGACAAGACACCACAATGGCGAACCGGGCCTAATGGCCCGAAAACATTATGCAACGCTTGTGGTGTAAGATACAAGTCGGGTCGATTGGTGCCTGAATACAGGCCTGCAGCTAGCCCTACATTTGTGCTGACCAAACACTCCAACTCGCATCGTAAAGTGTTGGAGCTACGGAGGCAGAAGGAAATGTTGCGGGCACACCAACACCAACAAAACCAGATTTTACAACATCAGAGTATGATGTTTGATATGTCCAACAATGATGATTACTTGATTCACCAACATATGGGACCTGATTTTAGGCAGATGATGTAG
Protein sequence

>MS.gene000872.t1

MEGTTNNIFQTTFSSDNNTTDNFIVEDLLNLNNDVDDDATIISDTNLDSATVNSTASSSTVTVVNSVSSSSLSGCDPNVVPDIGCQNFSDSHFSGDLCVPEDALRDLEWLSNVVEESFSSEDLQKMQLISGMKVRNQDEEPRELSQPNRNSPIFNKEVLVPAKARSKRTRGPPCDWSSRLLVLSQTTPSSSESELLIPTPALPTITVPRKQAKTAPRRKDSDGGSGGDGRRCLHCMTDKTPQWRTGPNGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLRAHQHQQNQILQHQSMMFDMSNNDDYLIHQHMGPDFRQMM