AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene000998

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000998.t1 MTR_2g062310 93.224 428 28 1 1 428 1 427 0.0 789
MS.gene000998.t1 MTR_2g084275 45.055 91 49 1 9 99 31 120 5.12e-21 95.5
MS.gene000998.t1 MTR_4g063130 42.857 91 51 1 9 99 33 122 1.46e-20 93.6
MS.gene000998.t1 MTR_4g063130 42.857 91 51 1 9 99 33 122 2.00e-20 93.2
MS.gene000998.t1 MTR_4g057330 45.556 90 48 1 10 99 31 119 3.03e-20 93.2
MS.gene000998.t1 MTR_1g115370 42.105 95 53 2 10 103 13 106 1.25e-17 82.4
MS.gene000998.t1 MTR_8g091300 41.000 100 57 2 1 99 22 120 3.86e-17 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000998.t1 AT1G05577 35.897 429 178 15 5 417 7 354 6.92e-64 210
MS.gene000998.t1 AT2G28150 46.739 92 48 1 8 99 31 121 1.37e-23 103
MS.gene000998.t1 AT5G10150 39.474 114 67 2 1 114 36 147 2.77e-21 95.9
MS.gene000998.t1 AT3G46110 43.878 98 54 1 2 99 11 107 6.19e-21 93.2
MS.gene000998.t1 AT3G46110 43.878 98 54 1 2 99 11 107 6.95e-21 93.6
MS.gene000998.t1 AT5G10150 39.823 113 66 2 1 113 36 146 7.68e-21 94.4
MS.gene000998.t1 AT5G59790 41.758 91 52 1 9 99 45 134 9.51e-21 94.4
MS.gene000998.t1 AT5G59790 41.758 91 52 1 9 99 45 134 1.19e-20 93.6

Find 70 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGGTGCTTTGGGACTTCT+TGG 0.231915 2.3:+32143642 MS.gene000998:CDS
GGAAATCAGTCAGGATTCTT+TGG 0.308801 2.3:+32143154 MS.gene000998:CDS
CATGATCAAAATGAACATTA+TGG 0.310101 2.3:+32143671 MS.gene000998:CDS
CAAATCCACACTACCCCTTT+TGG 0.310924 2.3:+32142779 MS.gene000998:CDS
ATATGTGTGGCAGGATTTAA+TGG 0.312486 2.3:+32142703 MS.gene000998:CDS
GGAGGATCAGCTAGGTGCTT+TGG 0.317386 2.3:+32143632 MS.gene000998:CDS
TAGGACCAAGCGAAGGATTC+AGG 0.338359 2.3:-32142527 None:intergenic
GAGGATCAGCTAGGTGCTTT+GGG 0.353768 2.3:+32143633 MS.gene000998:CDS
GACGTATTCATTATCAGAAA+TGG 0.358743 2.3:-32142744 None:intergenic
CAAACTTCTTATAAACCATT+TGG 0.361784 2.3:+32144137 MS.gene000998:CDS
GGCACATTAATAGGCTCCTT+AGG 0.380003 2.3:-32143572 None:intergenic
ACGTATTCATTATCAGAAAT+GGG 0.408507 2.3:-32142743 None:intergenic
TCAGTTACTTACGAGCAAAT+TGG 0.422889 2.3:-32144164 None:intergenic
CAAAAGGTGGAGAAGTTAGA+AGG 0.438816 2.3:+32141819 MS.gene000998:CDS
GCACATTAATAGGCTCCTTA+GGG 0.439238 2.3:-32143571 None:intergenic
TGATCTAAATCAAATGTTAT+CGG 0.450570 2.3:+32143133 MS.gene000998:CDS
GCTTCTAATCTTAGTGAATG+AGG 0.454114 2.3:-32143444 None:intergenic
TGTGGATTTGTGATCCTTTG+AGG 0.457496 2.3:-32142766 None:intergenic
ACTTCTTATAAACCATTTGG+TGG 0.460136 2.3:+32144140 MS.gene000998:CDS
ATGATTCAACAACCTCTTGT+AGG 0.473719 2.3:-32142546 None:intergenic
AAAGATATTAAGAGATGGCT+TGG 0.473793 2.3:+32142482 MS.gene000998:intron
GATTCTTCTTCTGATAAAGA+TGG 0.475364 2.3:-32143077 None:intergenic
GTTCTTCATCTTGCTCGAAA+CGG 0.489342 2.3:+32141905 MS.gene000998:CDS
CATAATTTGATGAGTAAGAA+GGG 0.494107 2.3:+32143323 MS.gene000998:CDS
TGATAAAGTACATACCAAAA+GGG 0.495189 2.3:-32142793 None:intergenic
AATGTTATCGGAAATCAGTC+AGG 0.496121 2.3:+32143145 MS.gene000998:CDS
GAGCAAATTGGTCCACCAAA+TGG 0.501260 2.3:-32144152 None:intergenic
TGCTCAGAAAACTGCCCCTA+AGG 0.506577 2.3:+32143556 MS.gene000998:CDS
TCATAATTTGATGAGTAAGA+AGG 0.513194 2.3:+32143322 MS.gene000998:CDS
CAAGAGTGGATATGTGTGGC+AGG 0.519703 2.3:+32142694 MS.gene000998:CDS
AAATCAAGCATGGAAACAAA+AGG 0.522656 2.3:+32141803 None:intergenic
AGATGGCTTGGTGAAGTGAG+AGG 0.523481 2.3:+32142494 MS.gene000998:CDS
TTTCAGCTCGGACAGGTCAT+CGG 0.536641 2.3:+32143178 MS.gene000998:CDS
GAGATGAAATAATCAAGAGC+AGG 0.544676 2.3:+32144090 MS.gene000998:CDS
AAAAGGGCTGAGATTTGTAA+AGG 0.547306 2.3:+32143599 MS.gene000998:CDS
AAAATGAACATTATGGAGCC+AGG 0.547597 2.3:+32143678 MS.gene000998:CDS
CTTGAAAAGATATTAAGAGA+TGG 0.548408 2.3:+32142477 MS.gene000998:intron
ATCAAATTATGATACAAAGA+AGG 0.549252 2.3:-32143311 None:intergenic
TGAGACGATGTTGACGATGT+TGG 0.555123 2.3:-32143413 None:intergenic
ACCTACCTGAATCCTTCGCT+TGG 0.556058 2.3:+32142522 MS.gene000998:CDS
AAACACATGAAGTCTTGTAA+AGG 0.559207 2.3:+32144924 MS.gene000998:CDS
AAGTCTTGTAAAGGAATGAA+AGG 0.559264 2.3:+32144933 MS.gene000998:CDS
TGTAAAGGAATGAAAGGCAT+GGG 0.564737 2.3:+32144939 MS.gene000998:CDS
GATAATGAATACGTCCTCAA+AGG 0.574396 2.3:+32142752 MS.gene000998:CDS
CGTATTCATTATCAGAAATG+GGG 0.578739 2.3:-32142742 None:intergenic
ATTTGTAAAGGAGACAAACT+AGG 0.580114 2.3:+32143611 MS.gene000998:CDS
ACATACCAAAAGGGGTAGTG+TGG 0.583512 2.3:-32142784 None:intergenic
TTGTAAAGGAATGAAAGGCA+TGG 0.590138 2.3:+32144938 MS.gene000998:CDS
CCTTCGCTTGGTCCTACAAG+AGG 0.590152 2.3:+32142534 MS.gene000998:CDS
TGAAGCTGTACAAGTTGAAG+AGG 0.593606 2.3:+32143031 MS.gene000998:CDS
GTTGATGATGCAGGCAATGT+GGG 0.595370 2.3:+32144874 MS.gene000998:intron
AATCTACTTTCTTAGTCACA+TGG 0.595550 2.3:+32141850 MS.gene000998:CDS
ATCTACTTTCTTAGTCACAT+GGG 0.598289 2.3:+32141851 MS.gene000998:CDS
GATAAAGTACATACCAAAAG+GGG 0.611244 2.3:-32142792 None:intergenic
AAGCTGTGTTTCCTCAGCAA+TGG 0.615582 2.3:-32144976 None:intergenic
ACAAACTAGGAGGATCAGCT+AGG 0.620815 2.3:+32143624 MS.gene000998:CDS
TACTTTCTTAGTCACATGGG+TGG 0.621822 2.3:+32141854 MS.gene000998:CDS
CACATTAATAGGCTCCTTAG+GGG 0.624516 2.3:-32143570 None:intergenic
TGAAGAACGCGAATGAGATG+AGG 0.629767 2.3:-32141890 None:intergenic
TCAAGCATGGAAACAAAAGG+TGG 0.631710 2.3:+32141806 None:intergenic
AACTATAGGAGGTACAAGAG+TGG 0.640091 2.3:+32142680 MS.gene000998:intron
GTATTCATTATCAGAAATGG+GGG 0.640428 2.3:-32142741 None:intergenic
CGAAACGGTGTTTATCTCAG+AGG 0.652327 2.3:+32141920 MS.gene000998:CDS
TTCAGCTACAACCATTGCTG+AGG 0.657539 2.3:+32144965 MS.gene000998:CDS
ACCAAGCGAAGGATTCAGGT+AGG 0.685603 2.3:-32142523 None:intergenic
GGTACAAGAGTGGATATGTG+TGG 0.687025 2.3:+32142690 MS.gene000998:CDS
TGTAAAGGAGACAAACTAGG+AGG 0.689066 2.3:+32143614 MS.gene000998:CDS
AGTTGATGATGCAGGCAATG+TGG 0.692418 2.3:+32144873 MS.gene000998:intron
CCTCTTGTAGGACCAAGCGA+AGG 0.701607 2.3:-32142534 None:intergenic
TTGGATTGGATGTGGAACTG+TGG 0.719863 2.3:+32143499 MS.gene000998:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGTGAATAAATAAAAAT+GGG - chr2.3:32142832-32142851 None:intergenic 10.0%
!! TTAATGTGAATAAATAAAAA+TGG - chr2.3:32142833-32142852 None:intergenic 10.0%
!! AAGAAACATGAAATTATTAT+TGG - chr2.3:32144049-32144068 None:intergenic 15.0%
!! AGTTAAAGGTTAAAAAAATG+AGG - chr2.3:32142615-32142634 None:intergenic 20.0%
!! ATCAAATTATGATACAAAGA+AGG - chr2.3:32143314-32143333 None:intergenic 20.0%
!! CAAGGAAATAAAGATTAATA+AGG - chr2.3:32142573-32142592 None:intergenic 20.0%
!! CTAACAAATTATTGAACTAT+AGG + chr2.3:32142666-32142685 MS.gene000998:intron 20.0%
!! GATTTCAACTATTAAATGTT+AGG + chr2.3:32144208-32144227 MS.gene000998:intron 20.0%
!! GTTAAAAACCATTCTTAAAA+GGG + chr2.3:32143929-32143948 MS.gene000998:intron 20.0%
!! TGATCTAAATCAAATGTTAT+CGG + chr2.3:32143133-32143152 MS.gene000998:CDS 20.0%
!! TGTTAAAAACCATTCTTAAA+AGG + chr2.3:32143928-32143947 MS.gene000998:intron 20.0%
!! TTAGCAAAAGTTACATAATA+AGG - chr2.3:32142902-32142921 None:intergenic 20.0%
!! TTAGTTGCAAAAATTGATTA+TGG - chr2.3:32142650-32142669 None:intergenic 20.0%
!!! ATGAAATTTTTTGGTCTTAT+AGG + chr2.3:32144242-32144261 MS.gene000998:intron 20.0%
!!! TCACATTAATATTTTGAGTA+TGG + chr2.3:32142844-32142863 MS.gene000998:intron 20.0%
!!! TGATTTAGATCATTCTTTTT+TGG - chr2.3:32143125-32143144 None:intergenic 20.0%
!!! TTTTAAGAATGGTTTTTAAC+AGG - chr2.3:32143929-32143948 None:intergenic 20.0%
! AAAAAATGAGGTTGAGAAAA+TGG - chr2.3:32142603-32142622 None:intergenic 25.0%
! AAAATTCTACGACACTATAT+CGG - chr2.3:32142258-32142277 None:intergenic 25.0%
! ACAAATTATTGAACTATAGG+AGG + chr2.3:32142669-32142688 MS.gene000998:intron 25.0%
! ACGTATTCATTATCAGAAAT+GGG - chr2.3:32142746-32142765 None:intergenic 25.0%
! ATGATAAAGTACATACCAAA+AGG - chr2.3:32142797-32142816 None:intergenic 25.0%
! ATTCAAAACCATGTCTAAAA+GGG - chr2.3:32143906-32143925 None:intergenic 25.0%
! CAAACTTCTTATAAACCATT+TGG + chr2.3:32144137-32144156 MS.gene000998:CDS 25.0%
! CATAATTTGATGAGTAAGAA+GGG + chr2.3:32143323-32143342 MS.gene000998:CDS 25.0%
! CATGATCAAAATGAACATTA+TGG + chr2.3:32143671-32143690 MS.gene000998:CDS 25.0%
! CCATTAGTAATTTGAAGAAA+TGG + chr2.3:32144358-32144377 MS.gene000998:intron 25.0%
! CCATTTCTTCAAATTACTAA+TGG - chr2.3:32144361-32144380 None:intergenic 25.0%
! CTTGAAAAGATATTAAGAGA+TGG + chr2.3:32142477-32142496 MS.gene000998:intron 25.0%
! GAACAATTTGAAGGAAAATA+TGG - chr2.3:32141963-32141982 None:intergenic 25.0%
! GGAGATACATATATAGTTAA+AGG - chr2.3:32142629-32142648 None:intergenic 25.0%
! TAATGTGTCTTTACACATAT+GGG - chr2.3:32144805-32144824 None:intergenic 25.0%
! TCATAATTTGATGAGTAAGA+AGG + chr2.3:32143322-32143341 MS.gene000998:CDS 25.0%
! TGATAAAGTACATACCAAAA+GGG - chr2.3:32142796-32142815 None:intergenic 25.0%
! TTAATGTGTCTTTACACATA+TGG - chr2.3:32144806-32144825 None:intergenic 25.0%
!! AATATGTCACTTCAATTGTT+TGG + chr2.3:32144186-32144205 MS.gene000998:intron 25.0%
!!! AAACTGTGCATGAAATTTTT+TGG + chr2.3:32144233-32144252 MS.gene000998:intron 25.0%
!!! AAATTTTTTGGTCTTATAGG+TGG + chr2.3:32144245-32144264 MS.gene000998:intron 25.0%
AAAGATATTAAGAGATGGCT+TGG + chr2.3:32142482-32142501 MS.gene000998:intron 30.0%
AAATATACCGAAACTACAAC+TGG + chr2.3:32144533-32144552 MS.gene000998:intron 30.0%
AATATACCGAAACTACAACT+GGG + chr2.3:32144534-32144553 MS.gene000998:intron 30.0%
AATCCAATGCTACTATGATT+GGG + chr2.3:32143960-32143979 MS.gene000998:intron 30.0%
AATCTACTTTCTTAGTCACA+TGG + chr2.3:32141850-32141869 MS.gene000998:CDS 30.0%
AATTGCAGATCATAGACAAT+AGG - chr2.3:32142364-32142383 None:intergenic 30.0%
ACACAATGTTATCAAATAGC+TGG + chr2.3:32142314-32142333 MS.gene000998:intron 30.0%
ACTTCTTATAAACCATTTGG+TGG + chr2.3:32144140-32144159 MS.gene000998:CDS 30.0%
AGTAAGAAGGGTAAAAAAGA+TGG + chr2.3:32143335-32143354 MS.gene000998:CDS 30.0%
AGTGTGTTCAAAAATTGGAT+TGG + chr2.3:32143485-32143504 MS.gene000998:CDS 30.0%
ATCTACTTTCTTAGTCACAT+GGG + chr2.3:32141851-32141870 MS.gene000998:CDS 30.0%
ATTTGTAAAGGAGACAAACT+AGG + chr2.3:32143611-32143630 MS.gene000998:CDS 30.0%
CGTATTCATTATCAGAAATG+GGG - chr2.3:32142745-32142764 None:intergenic 30.0%
GACGTATTCATTATCAGAAA+TGG - chr2.3:32142747-32142766 None:intergenic 30.0%
GATAAAGTACATACCAAAAG+GGG - chr2.3:32142795-32142814 None:intergenic 30.0%
GATTCAAAACCATGTCTAAA+AGG - chr2.3:32143907-32143926 None:intergenic 30.0%
GATTCTTCTTCTGATAAAGA+TGG - chr2.3:32143080-32143099 None:intergenic 30.0%
GCATCATCAACTACTATTTA+TGG - chr2.3:32144865-32144884 None:intergenic 30.0%
GTAATTTGAAGAAATGGAAG+CGG + chr2.3:32144364-32144383 MS.gene000998:intron 30.0%
GTATTCATTATCAGAAATGG+GGG - chr2.3:32142744-32142763 None:intergenic 30.0%
GTATTGTCAATATCAGACAT+TGG + chr2.3:32144409-32144428 MS.gene000998:intron 30.0%
GTGTACTAAATTGTGTATCA+CGG - chr2.3:32142298-32142317 None:intergenic 30.0%
TATTAATGTGCCCGAAAAAA+GGG + chr2.3:32143583-32143602 MS.gene000998:CDS 30.0%
TCACACATAGTTCAAAATTG+CGG + chr2.3:32142059-32142078 MS.gene000998:intron 30.0%
TCCAACAAAAAAAGCCAATA+AGG + chr2.3:32144564-32144583 MS.gene000998:intron 30.0%
TGACTAGTGTGTTCAAAAAT+TGG + chr2.3:32143480-32143499 MS.gene000998:CDS 30.0%
TTATGATACAATTTCTCACC+TGG - chr2.3:32143699-32143718 None:intergenic 30.0%
TTATGATGTTTACCAACTCT+TGG + chr2.3:32144687-32144706 MS.gene000998:intron 30.0%
! AAACACATGAAGTCTTGTAA+AGG + chr2.3:32144924-32144943 MS.gene000998:CDS 30.0%
! AAGTCTTGTAAAGGAATGAA+AGG + chr2.3:32144933-32144952 MS.gene000998:CDS 30.0%
! AATTTTCCCAGTTGTAGTTT+CGG - chr2.3:32144543-32144562 None:intergenic 30.0%
! TTCAAAAATTGGATTGGATG+TGG + chr2.3:32143491-32143510 MS.gene000998:CDS 30.0%
! TTGAAGAAGAGAAGCTTTTA+GGG + chr2.3:32143228-32143247 MS.gene000998:CDS 30.0%
! TTTTACAGAAAAAGCTGTGA+TGG + chr2.3:32144068-32144087 MS.gene000998:intron 30.0%
!! CCTCTAAAACCTTTATATTG+CGG - chr2.3:32142092-32142111 None:intergenic 30.0%
!! TAAATAGTAGTTGATGATGC+AGG + chr2.3:32144865-32144884 MS.gene000998:intron 30.0%
!!! ACCTTATTGGCTTTTTTTGT+TGG - chr2.3:32144568-32144587 None:intergenic 30.0%
!!! TCTAAGCATGGTTTTAAGTT+GGG - chr2.3:32143867-32143886 None:intergenic 30.0%
!!! TTCTAAGCATGGTTTTAAGT+TGG - chr2.3:32143868-32143887 None:intergenic 30.0%
AAAAGGGCTGAGATTTGTAA+AGG + chr2.3:32143599-32143618 MS.gene000998:CDS 35.0%
AAAATGAACATTATGGAGCC+AGG + chr2.3:32143678-32143697 MS.gene000998:CDS 35.0%
AATGTTATCGGAAATCAGTC+AGG + chr2.3:32143145-32143164 MS.gene000998:CDS 35.0%
ACCAGTACAGAACAATTTGA+AGG - chr2.3:32141972-32141991 None:intergenic 35.0%
ATATGTGTGGCAGGATTTAA+TGG + chr2.3:32142703-32142722 MS.gene000998:CDS 35.0%
ATGATTCAACAACCTCTTGT+AGG - chr2.3:32142549-32142568 None:intergenic 35.0%
CAACTGCATACGCAATTTAA+AGG - chr2.3:32143740-32143759 None:intergenic 35.0%
CGAAACCTATACTTACACAT+AGG + chr2.3:32144333-32144352 MS.gene000998:intron 35.0%
CTATTAATGTGCCCGAAAAA+AGG + chr2.3:32143582-32143601 MS.gene000998:CDS 35.0%
GAATCCAATGCTACTATGAT+TGG + chr2.3:32143959-32143978 MS.gene000998:intron 35.0%
GACTATGACTATTCTAAGCA+TGG - chr2.3:32143879-32143898 None:intergenic 35.0%
GAGATGAAATAATCAAGAGC+AGG + chr2.3:32144090-32144109 MS.gene000998:CDS 35.0%
GAGTTTCTGCATTAGTACAA+AGG - chr2.3:32142968-32142987 None:intergenic 35.0%
GATAATGAATACGTCCTCAA+AGG + chr2.3:32142752-32142771 MS.gene000998:CDS 35.0%
GCTTCTAATCTTAGTGAATG+AGG - chr2.3:32143447-32143466 None:intergenic 35.0%
GGAGTAGAAAAAGTTGAATC+AGG - chr2.3:32143395-32143414 None:intergenic 35.0%
GTAGAAAAAGTTGAATCAGG+AGG - chr2.3:32143392-32143411 None:intergenic 35.0%
GTTTCGTGTCTATCAATGTT+TGG - chr2.3:32144319-32144338 None:intergenic 35.0%
TAACCCAATCATAGTAGCAT+TGG - chr2.3:32143966-32143985 None:intergenic 35.0%
TCAGTTACTTACGAGCAAAT+TGG - chr2.3:32144167-32144186 None:intergenic 35.0%
TCCTTCAAATTGTTCTGTAC+TGG + chr2.3:32141968-32141987 MS.gene000998:intron 35.0%
TTAAATTGCGTATGCAGTTG+CGG + chr2.3:32143740-32143759 MS.gene000998:intron 35.0%
TTGTAAAGGAATGAAAGGCA+TGG + chr2.3:32144938-32144957 MS.gene000998:CDS 35.0%
! ATGTGTTTGTGCATTTTCTC+AGG - chr2.3:32144912-32144931 None:intergenic 35.0%
! GTTGAAGAAGAGAAGCTTTT+AGG + chr2.3:32143227-32143246 MS.gene000998:CDS 35.0%
! TGTAAAGGAATGAAAGGCAT+GGG + chr2.3:32144939-32144958 MS.gene000998:CDS 35.0%
!! CACAAACACCCTTTTAAGAA+TGG - chr2.3:32143940-32143959 None:intergenic 35.0%
!! CCGCAATATAAAGGTTTTAG+AGG + chr2.3:32142089-32142108 MS.gene000998:intron 35.0%
!! CTAAAGTGTCGAAGTTACTT+AGG + chr2.3:32144467-32144486 MS.gene000998:intron 35.0%
!! CTTTTAGGGAATGGAAAAGA+AGG + chr2.3:32143242-32143261 MS.gene000998:CDS 35.0%
!! TGAGAAAATGGACTAAAGCA+AGG - chr2.3:32142591-32142610 None:intergenic 35.0%
!! TGTTGACTAGTTTGTAGGTT+GGG + chr2.3:32144490-32144509 MS.gene000998:intron 35.0%
!! TTAGATCAAAAGAGTGTCTG+TGG - chr2.3:32144451-32144470 None:intergenic 35.0%
!! TTAGGTGTTGACTAGTTTGT+AGG + chr2.3:32144485-32144504 MS.gene000998:intron 35.0%
!!! ACAAATCTCAGCCCTTTTTT+CGG - chr2.3:32143597-32143616 None:intergenic 35.0%
!!! ATTGCTTGTTTTGTCTGTTC+TGG + chr2.3:32142167-32142186 MS.gene000998:intron 35.0%
!!! CTTTTTTCGGGCACATTAAT+AGG - chr2.3:32143584-32143603 None:intergenic 35.0%
CAAAAGGTGGAGAAGTTAGA+AGG + chr2.3:32141819-32141838 MS.gene000998:CDS 40.0%
CAATAAGGTCAAGATTCTGC+TGG + chr2.3:32144579-32144598 MS.gene000998:intron 40.0%
CACATTAATAGGCTCCTTAG+GGG - chr2.3:32143573-32143592 None:intergenic 40.0%
CAGCAGAATCTTGACCTTAT+TGG - chr2.3:32144581-32144600 None:intergenic 40.0%
CCACAATACAAACCATTTCG+AGG - chr2.3:32143829-32143848 None:intergenic 40.0%
CGTGTCTATCAATGTTTGGT+AGG - chr2.3:32144315-32144334 None:intergenic 40.0%
GCACATTAATAGGCTCCTTA+GGG - chr2.3:32143574-32143593 None:intergenic 40.0%
GGAAATCAGTCAGGATTCTT+TGG + chr2.3:32143154-32143173 MS.gene000998:CDS 40.0%
GGTACACAACCGCAATATAA+AGG + chr2.3:32142080-32142099 MS.gene000998:intron 40.0%
GTCGAAGTTGCAATTGCATT+CGG + chr2.3:32143794-32143813 MS.gene000998:intron 40.0%
GTTCTTCATCTTGCTCGAAA+CGG + chr2.3:32141905-32141924 MS.gene000998:CDS 40.0%
TACTTTCTTAGTCACATGGG+TGG + chr2.3:32141854-32141873 MS.gene000998:CDS 40.0%
TATCAGAAATGGGGGTTATG+AGG - chr2.3:32142736-32142755 None:intergenic 40.0%
TGGTGCCTATGTGTAAGTAT+AGG - chr2.3:32144341-32144360 None:intergenic 40.0%
TGTAAAGGAGACAAACTAGG+AGG + chr2.3:32143614-32143633 MS.gene000998:CDS 40.0%
TGTGGATTTGTGATCCTTTG+AGG - chr2.3:32142769-32142788 None:intergenic 40.0%
TTACCAACTCTTGGTTGCAT+GGG + chr2.3:32144696-32144715 MS.gene000998:intron 40.0%
TTTACCAACTCTTGGTTGCA+TGG + chr2.3:32144695-32144714 MS.gene000998:intron 40.0%
! AACTATAGGAGGTACAAGAG+TGG + chr2.3:32142680-32142699 MS.gene000998:intron 40.0%
! AGTCATGACCCTTTTAGACA+TGG + chr2.3:32143895-32143914 MS.gene000998:intron 40.0%
! CCTCGAAATGGTTTGTATTG+TGG + chr2.3:32143826-32143845 MS.gene000998:intron 40.0%
! TGAAGCTGTACAAGTTGAAG+AGG + chr2.3:32143031-32143050 MS.gene000998:CDS 40.0%
!! GAAGAGAAGCTTTTAGGGAA+TGG + chr2.3:32143233-32143252 MS.gene000998:CDS 40.0%
!! GTGTTGACTAGTTTGTAGGT+TGG + chr2.3:32144489-32144508 MS.gene000998:intron 40.0%
!!! CAAATCTCAGCCCTTTTTTC+GGG - chr2.3:32143596-32143615 None:intergenic 40.0%
!!! GGATTCTTTGGTTTTCAGCT+CGG + chr2.3:32143166-32143185 MS.gene000998:CDS 40.0%
AAGCTGTGTTTCCTCAGCAA+TGG - chr2.3:32144979-32144998 None:intergenic 45.0%
ACAAACTAGGAGGATCAGCT+AGG + chr2.3:32143624-32143643 MS.gene000998:CDS 45.0%
ACATACCAAAAGGGGTAGTG+TGG - chr2.3:32142787-32142806 None:intergenic 45.0%
CGAAACGGTGTTTATCTCAG+AGG + chr2.3:32141920-32141939 MS.gene000998:CDS 45.0%
GAGCAAATTGGTCCACCAAA+TGG - chr2.3:32144155-32144174 None:intergenic 45.0%
GGCACATTAATAGGCTCCTT+AGG - chr2.3:32143575-32143594 None:intergenic 45.0%
GGTACAAGAGTGGATATGTG+TGG + chr2.3:32142690-32142709 MS.gene000998:CDS 45.0%
TGAAGAACGCGAATGAGATG+AGG - chr2.3:32141893-32141912 None:intergenic 45.0%
TGAGACGATGTTGACGATGT+TGG - chr2.3:32143416-32143435 None:intergenic 45.0%
TTACACTGCGAACCACAATG+TGG + chr2.3:32143763-32143782 MS.gene000998:intron 45.0%
TTCAGCTACAACCATTGCTG+AGG + chr2.3:32144965-32144984 MS.gene000998:CDS 45.0%
TTGTATTGTGGCCGCAATTG+CGG + chr2.3:32143838-32143857 MS.gene000998:intron 45.0%
! CAAATCCACACTACCCCTTT+TGG + chr2.3:32142779-32142798 MS.gene000998:CDS 45.0%
! TTGGATTGGATGTGGAACTG+TGG + chr2.3:32143499-32143518 MS.gene000998:CDS 45.0%
!! AGTTGATGATGCAGGCAATG+TGG + chr2.3:32144873-32144892 MS.gene000998:intron 45.0%
!! GTTGATGATGCAGGCAATGT+GGG + chr2.3:32144874-32144893 MS.gene000998:intron 45.0%
!! TCTGTTCTGGCTCTGACATT+AGG + chr2.3:32142180-32142199 MS.gene000998:intron 45.0%
AAGTTGGGCAACCGCAATTG+CGG - chr2.3:32143852-32143871 None:intergenic 50.0%
ACCAAGCGAAGGATTCAGGT+AGG - chr2.3:32142526-32142545 None:intergenic 50.0%
ACCTACCTGAATCCTTCGCT+TGG + chr2.3:32142522-32142541 MS.gene000998:CDS 50.0%
AGGTCAAGATTCTGCTGGTG+TGG + chr2.3:32144584-32144603 MS.gene000998:intron 50.0%
CAAGAGTGGATATGTGTGGC+AGG + chr2.3:32142694-32142713 MS.gene000998:CDS 50.0%
CGACTGCATCAACCACATTG+TGG - chr2.3:32143778-32143797 None:intergenic 50.0%
GAGGATCAGCTAGGTGCTTT+GGG + chr2.3:32143633-32143652 MS.gene000998:CDS 50.0%
TAGCCCATGCAACCAAGAGT+TGG - chr2.3:32144702-32144721 None:intergenic 50.0%
TAGGACCAAGCGAAGGATTC+AGG - chr2.3:32142530-32142549 None:intergenic 50.0%
TGCTCAGAAAACTGCCCCTA+AGG + chr2.3:32143556-32143575 MS.gene000998:CDS 50.0%
TTTCAGCTCGGACAGGTCAT+CGG + chr2.3:32143178-32143197 MS.gene000998:CDS 50.0%
! TAGGGGCAGTTTTCTGAGCA+GGG - chr2.3:32143556-32143575 None:intergenic 50.0%
! TTAGGGGCAGTTTTCTGAGC+AGG - chr2.3:32143557-32143576 None:intergenic 50.0%
!! AGATGGCTTGGTGAAGTGAG+AGG + chr2.3:32142494-32142513 MS.gene000998:CDS 50.0%
!! CTAGGTGCTTTGGGACTTCT+TGG + chr2.3:32143642-32143661 MS.gene000998:CDS 50.0%
!!! CTTTGGTTTTCAGCTCGGAC+AGG + chr2.3:32143171-32143190 MS.gene000998:CDS 50.0%
CCTCTTGTAGGACCAAGCGA+AGG - chr2.3:32142537-32142556 None:intergenic 55.0%
CCTTCGCTTGGTCCTACAAG+AGG + chr2.3:32142534-32142553 MS.gene000998:CDS 55.0%
CGGTTGCAGATGCCTCGAAA+TGG + chr2.3:32143814-32143833 MS.gene000998:intron 55.0%
GGAGGATCAGCTAGGTGCTT+TGG + chr2.3:32143632-32143651 MS.gene000998:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 32141812 32145043 32141812 ID=MS.gene000998
chr2.3 mRNA 32141812 32145043 32141812 ID=MS.gene000998.t1;Parent=MS.gene000998
chr2.3 exon 32141812 32141941 32141812 ID=MS.gene000998.t1.exon1;Parent=MS.gene000998.t1
chr2.3 CDS 32141812 32141941 32141812 ID=cds.MS.gene000998.t1;Parent=MS.gene000998.t1
chr2.3 exon 32142486 32142555 32142486 ID=MS.gene000998.t1.exon2;Parent=MS.gene000998.t1
chr2.3 CDS 32142486 32142555 32142486 ID=cds.MS.gene000998.t1;Parent=MS.gene000998.t1
chr2.3 exon 32142688 32142800 32142688 ID=MS.gene000998.t1.exon3;Parent=MS.gene000998.t1
chr2.3 CDS 32142688 32142800 32142688 ID=cds.MS.gene000998.t1;Parent=MS.gene000998.t1
chr2.3 exon 32142982 32143699 32142982 ID=MS.gene000998.t1.exon4;Parent=MS.gene000998.t1
chr2.3 CDS 32142982 32143699 32142982 ID=cds.MS.gene000998.t1;Parent=MS.gene000998.t1
chr2.3 exon 32144076 32144174 32144076 ID=MS.gene000998.t1.exon5;Parent=MS.gene000998.t1
chr2.3 CDS 32144076 32144174 32144076 ID=cds.MS.gene000998.t1;Parent=MS.gene000998.t1
chr2.3 exon 32144887 32145043 32144887 ID=MS.gene000998.t1.exon6;Parent=MS.gene000998.t1
chr2.3 CDS 32144887 32145043 32144887 ID=cds.MS.gene000998.t1;Parent=MS.gene000998.t1
Gene Sequence

>MS.gene000998

ATGGAAACAAAAGGTGGAGAAGTTAGAAGGCTTCACATAATCTACTTTCTTAGTCACATGGGTGGTCATGCAGAACATCCTCATCTCATTCGCGTTCTTCATCTTGCTCGAAACGGTGTTTATCTCAGAGGTAAAACTCGTTTATGTTCCATATTTTCCTTCAAATTGTTCTGTACTGGTTCTGATCTTAGTACATCTGTTTTTTTTTTCTGATGATCATAATGTTTGTTCTTAAATGTGTATTCTGTCACACATAGTTCAAAATTGCGGTACACAACCGCAATATAAAGGTTTTAGAGGTTCACAATCATAATTGTAGCTGCATTTGTCAGCATTTTAGAACTATGCTGTCACAATTGCTTGTTTTGTCTGTTCTGGCTCTGACATTAGGACATCTTGTTTTTTCTGCTGCTCATAATGTCACTCACAATGTTGTCAAATAGCCGATATAGTGTCGTAGAATTTTAACAAATTGTTATCGTTCCGTGATACACAATTTAGTACACAATGTTATCAAATAGCTGGCTATTAGCAGAAGTTGAACAAACTCCTATTGTCTATGATCTGCAATTAACAACATTGTTATTCATAAATGCTTCATGAATATTAATAATTAATTTGTGACAATGATTTGTGAGTCTAAAATGACACTTTCTTTTTTATTTCTTGAAAAGATATTAAGAGATGGCTTGGTGAAGTGAGAGGAAGAGACCTACCTGAATCCTTCGCTTGGTCCTACAAGAGGTTGTTGAATCATACCTTATTAATCTTTATTTCCTTGCTTTAGTCCATTTTCTCAACCTCATTTTTTTAACCTTTAACTATATATGTATCTCCATAATCAATTTTTGCAACTAACAAATTATTGAACTATAGGAGGTACAAGAGTGGATATGTGTGGCAGGATTTAATGGATGACGACCTCATAACCCCCATTTCTGATAATGAATACGTCCTCAAAGGATCACAAATCCACACTACCCCTTTTGGTATGTACTTTATCATAATCACTACTGTCCCATTTTTATTTATTCACATTAATATTTTGAGTATGGTCATCACTAATTTCTATCTATCTACATTATTGCCTTATTATGTAACTTTTGCTAAGAATGTTAAACAAGAATAATTAAGTTGTACACTTTTTTTTTTTCCTTTGTACTAATGCAGAAACTCATGCAATTAATTCAACAATCAATGAAAAGAAAACTGATACTGATGAAGCTGTACAAGTTGAAGAGGACAAACAAAAGCAGCAAAAGAAACCATCTTTATCAGAAGAAGAATCTGAAATTCAGAAAGAAACTGATCCAAAAAAGAATGATCTAAATCAAATGTTATCGGAAATCAGTCAGGATTCTTTGGTTTTCAGCTCGGACAGGTCATCGGTGACTGACGATGATTCTTCTTTTAAAGTTGAAGAAGAGAAGCTTTTAGGGAATGGAAAAGAAGGTTGCTTGAATGACAAGAAACATGAGAAGCTTGATAGTTTCTCATTTCCTTCTTTGTATCATAATTTGATGAGTAAGAAGGGTAAAAAAGATGGTCATAATAACAAAACTGATACTACTACTACACCTCCTGATTCAACTTTTTCTACTCCAACATCGTCAACATCGTCTCAATCTCAATCCTCATTCACTAAGATTAGAAGCAATTCTATTAGAGTGACTAGTGTGTTCAAAAATTGGATTGGATGTGGAACTGTGGCAACAAATGATGCTGCTTTTGTCTCTATGAACCCTGCTCAGAAAACTGCCCCTAAGGAGCCTATTAATGTGCCCGAAAAAAGGGCTGAGATTTGTAAAGGAGACAAACTAGGAGGATCAGCTAGGTGCTTTGGGACTTCTTGGAATTATCATGATCAAAATGAACATTATGGAGCCAGGTGAGAAATTGTATCATAAATTTAGCTTAGAATCATGCCTTTAAATTGCGTATGCAGTTGCGGTTACACTGCGAACCACAATGTGGTTGATGCAGTCGAAGTTGCAATTGCATTCGGTTGCAGATGCCTCGAAATGGTTTGTATTGTGGCCGCAATTGCGGTTGCCCAACTTAAAACCATGCTTAGAATAGTCATAGTCATGACCCTTTTAGACATGGTTTTGAATCCTGTTAAAAACCATTCTTAAAAGGGTGTTTGTGAATCCAATGCTACTATGATTGGGTTACATTTACATTAGACATACGTCACTATGATTATTTGCAAAATTTAATGTCATGACACGTGACCAATAATAATTTCATGTTTCTTTTTACAGAAAAAGCTGTGATGGAGATGAAATAATCAAGAGCAGGAAAAAGCTAAGCGAGTTAATGAGTCAAACTTCTTATAAACCATTTGGTGGACCAATTTGCTCGTAAGTAACTGAATATGTCACTTCAATTGTTTGGATTTCAACTATTAAATGTTAGGACAAACTGTGCATGAAATTTTTTGGTCTTATAGGTGGAAGATATTTTATGTAACACACAAGTTGAGTATCAATAGTGTTGACCTACCAAACATTGATAGACACGAAACCTATACTTACACATAGGCACCATTAGTAATTTGAAGAAATGGAAGCGGTTGAATGTAAACACATGTGCTTGTATTGTCAATATCAGACATTGGCACATATCGAACACTGCCACAGACACTCTTTTGATCTAAAGTGTCGAAGTTACTTAGGTGTTGACTAGTTTGTAGGTTGGGCAATAAAAAACAAAAACAAGAAATATACCGAAACTACAACTGGGAAAATTTTCCAACAAAAAAAGCCAATAAGGTCAAGATTCTGCTGGTGTGGTTATTATATTGTCAAAAATCAGAATAATGTTTTTTTCTTGTAAAAGAAATACAAAATATAAGTTGACATTGATTGCTAGATTATGATGTTTACCAACTCTTGGTTGCATGGGCTAGATATACTTAGTAGCTGAATTTCTCGCATCTTAATTTAATGCATCAAAGTTAGAATAGTATGAGCTACATACTTTATATGCCCATATGTGTAAAGACACATTAAATTTTGTGTATTTAATTTTGATTATGAAAGATGAGACCATAAATAGTAGTTGATGATGCAGGCAATGTGGGAAGTCATTCAAGCCTGAGAAAATGCACAAACACATGAAGTCTTGTAAAGGAATGAAAGGCATGGGAACTTCAGCTACAACCATTGCTGAGGAAACACAGCTTCATAGATCAACTTCATCATCTAAAGATTACCTTTTGCAAAATTAA
Protein sequence

>MS.gene000998.t1

METKGGEVRRLHIIYFLSHMGGHAEHPHLIRVLHLARNGVYLRDIKRWLGEVRGRDLPESFAWSYKRRYKSGYVWQDLMDDDLITPISDNEYVLKGSQIHTTPFETHAINSTINEKKTDTDEAVQVEEDKQKQQKKPSLSEEESEIQKETDPKKNDLNQMLSEISQDSLVFSSDRSSVTDDDSSFKVEEEKLLGNGKEGCLNDKKHEKLDSFSFPSLYHNLMSKKGKKDGHNNKTDTTTTPPDSTFSTPTSSTSSQSQSSFTKIRSNSIRVTSVFKNWIGCGTVATNDAAFVSMNPAQKTAPKEPINVPEKRAEICKGDKLGGSARCFGTSWNYHDQNEHYGARKSCDGDEIIKSRKKLSELMSQTSYKPFGGPICSQCGKSFKPEKMHKHMKSCKGMKGMGTSATTIAEETQLHRSTSSSKDYLLQN