Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001078.t1 | AES69496.2 | 85.8 | 246 | 35 | 0 | 1 | 246 | 130 | 375 | 4.50E-107 | 397.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001078.t1 | Q9LSE2 | 49.4 | 241 | 96 | 2 | 4 | 239 | 265 | 484 | 4.8e-49 | 196.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001078.t1 | G7IWT3 | 85.8 | 246 | 35 | 0 | 1 | 246 | 130 | 375 | 3.2e-107 | 397.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene001078.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001078.t1 | MTR_3g030700 | 88.618 | 246 | 28 | 0 | 1 | 246 | 130 | 375 | 2.70e-160 | 449 |
| MS.gene001078.t1 | MTR_3g104100 | 69.380 | 258 | 66 | 2 | 2 | 246 | 122 | 379 | 2.73e-110 | 322 |
| MS.gene001078.t1 | MTR_2g081040 | 70.325 | 246 | 60 | 2 | 14 | 246 | 116 | 361 | 6.82e-105 | 308 |
| MS.gene001078.t1 | MTR_3g498695 | 49.573 | 234 | 97 | 4 | 12 | 240 | 259 | 476 | 2.68e-67 | 216 |
| MS.gene001078.t1 | MTR_3g498695 | 49.145 | 234 | 97 | 5 | 12 | 240 | 259 | 475 | 8.75e-65 | 209 |
| MS.gene001078.t1 | MTR_7g083900 | 55.026 | 189 | 78 | 1 | 65 | 246 | 284 | 472 | 2.29e-61 | 200 |
| MS.gene001078.t1 | MTR_7g083900 | 54.737 | 190 | 78 | 2 | 65 | 246 | 284 | 473 | 2.77e-60 | 197 |
| MS.gene001078.t1 | MTR_3g111290 | 37.563 | 197 | 104 | 3 | 46 | 242 | 152 | 329 | 6.70e-32 | 119 |
| MS.gene001078.t1 | MTR_5g030770 | 41.969 | 193 | 83 | 4 | 55 | 241 | 141 | 310 | 1.22e-31 | 118 |
| MS.gene001078.t1 | MTR_5g030770 | 42.632 | 190 | 92 | 6 | 55 | 241 | 141 | 316 | 1.90e-31 | 118 |
| MS.gene001078.t1 | MTR_1g112680 | 31.959 | 194 | 101 | 4 | 57 | 223 | 307 | 496 | 3.00e-23 | 98.2 |
| MS.gene001078.t1 | MTR_8g064700 | 30.688 | 189 | 119 | 4 | 57 | 240 | 234 | 415 | 2.44e-19 | 86.7 |
| MS.gene001078.t1 | MTR_4g057270 | 30.851 | 188 | 123 | 4 | 58 | 243 | 140 | 322 | 2.03e-18 | 83.2 |
| MS.gene001078.t1 | MTR_2g084280 | 30.256 | 195 | 115 | 5 | 56 | 243 | 122 | 302 | 4.99e-17 | 79.0 |
| MS.gene001078.t1 | MTR_2g038040 | 35.593 | 177 | 96 | 9 | 66 | 228 | 51 | 223 | 5.28e-16 | 75.1 |
| MS.gene001078.t1 | MTR_8g024770 | 33.526 | 173 | 106 | 5 | 44 | 212 | 256 | 423 | 3.26e-15 | 74.7 |
| MS.gene001078.t1 | MTR_8g067280 | 30.723 | 166 | 109 | 2 | 55 | 214 | 450 | 615 | 9.36e-15 | 73.6 |
| MS.gene001078.t1 | MTR_8g024790 | 43.373 | 83 | 47 | 0 | 39 | 121 | 263 | 345 | 2.60e-14 | 72.0 |
| MS.gene001078.t1 | MTR_0250s0040 | 28.342 | 187 | 127 | 4 | 34 | 218 | 53 | 234 | 1.42e-13 | 68.9 |
| MS.gene001078.t1 | MTR_8g027495 | 31.073 | 177 | 106 | 4 | 59 | 231 | 450 | 614 | 4.41e-13 | 68.6 |
| MS.gene001078.t1 | MTR_5g014640 | 26.087 | 207 | 132 | 5 | 45 | 243 | 129 | 322 | 9.35e-13 | 67.0 |
| MS.gene001078.t1 | MTR_5g030430 | 42.647 | 68 | 39 | 0 | 55 | 122 | 481 | 548 | 2.26e-12 | 66.6 |
| MS.gene001078.t1 | MTR_7g117670 | 46.269 | 67 | 36 | 0 | 59 | 125 | 394 | 460 | 2.51e-12 | 66.2 |
| MS.gene001078.t1 | MTR_1g072320 | 52.830 | 53 | 25 | 0 | 69 | 121 | 472 | 524 | 2.94e-12 | 66.2 |
| MS.gene001078.t1 | MTR_4g091990 | 28.767 | 146 | 78 | 3 | 66 | 210 | 44 | 164 | 3.85e-12 | 63.9 |
| MS.gene001078.t1 | MTR_2g010450 | 28.333 | 180 | 118 | 4 | 46 | 218 | 149 | 324 | 5.76e-12 | 65.1 |
| MS.gene001078.t1 | MTR_7g096350 | 42.647 | 68 | 39 | 0 | 55 | 122 | 343 | 410 | 8.44e-12 | 64.7 |
| MS.gene001078.t1 | MTR_4g092700 | 46.552 | 58 | 31 | 0 | 65 | 122 | 156 | 213 | 4.16e-11 | 62.4 |
| MS.gene001078.t1 | MTR_7g110810 | 34.188 | 117 | 69 | 2 | 21 | 134 | 163 | 274 | 5.75e-11 | 62.0 |
| MS.gene001078.t1 | MTR_8g098275 | 29.000 | 200 | 111 | 5 | 69 | 242 | 246 | 440 | 6.16e-11 | 62.0 |
| MS.gene001078.t1 | MTR_4g066380 | 23.153 | 203 | 147 | 2 | 33 | 235 | 119 | 312 | 9.87e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001078.t1 | AT3G26744 | 56.906 | 181 | 73 | 1 | 65 | 240 | 305 | 485 | 2.22e-64 | 208 |
| MS.gene001078.t1 | AT3G26744 | 56.906 | 181 | 73 | 1 | 65 | 240 | 305 | 485 | 2.22e-64 | 208 |
| MS.gene001078.t1 | AT3G26744 | 56.906 | 181 | 73 | 1 | 65 | 240 | 305 | 485 | 2.22e-64 | 208 |
| MS.gene001078.t1 | AT1G12860 | 58.192 | 177 | 73 | 1 | 65 | 240 | 265 | 441 | 1.18e-63 | 205 |
| MS.gene001078.t1 | AT3G26744 | 57.055 | 163 | 65 | 1 | 65 | 222 | 305 | 467 | 1.78e-57 | 190 |
| MS.gene001078.t1 | AT1G12860 | 58.491 | 159 | 65 | 1 | 65 | 222 | 265 | 423 | 1.52e-56 | 186 |
| MS.gene001078.t1 | AT5G65640 | 40.415 | 193 | 103 | 5 | 51 | 241 | 160 | 342 | 2.03e-28 | 110 |
| MS.gene001078.t1 | AT5G10570 | 46.012 | 163 | 64 | 6 | 57 | 216 | 140 | 281 | 4.45e-27 | 106 |
| MS.gene001078.t1 | AT2G16910 | 33.161 | 193 | 111 | 3 | 66 | 241 | 313 | 504 | 1.54e-24 | 102 |
| MS.gene001078.t1 | AT2G28160 | 33.166 | 199 | 114 | 7 | 17 | 209 | 86 | 271 | 4.33e-17 | 79.3 |
| MS.gene001078.t1 | AT2G28160 | 33.166 | 199 | 114 | 7 | 17 | 209 | 86 | 271 | 4.51e-17 | 79.3 |
| MS.gene001078.t1 | AT5G65640 | 59.459 | 74 | 28 | 1 | 51 | 122 | 160 | 233 | 9.40e-16 | 75.5 |
| MS.gene001078.t1 | AT4G29930 | 28.667 | 150 | 88 | 2 | 66 | 212 | 53 | 186 | 8.48e-15 | 71.6 |
| MS.gene001078.t1 | AT5G46760 | 32.099 | 162 | 105 | 3 | 55 | 214 | 403 | 561 | 1.13e-14 | 73.6 |
| MS.gene001078.t1 | AT4G29930 | 28.667 | 150 | 88 | 2 | 66 | 212 | 53 | 186 | 1.70e-14 | 70.9 |
| MS.gene001078.t1 | AT4G29930 | 29.932 | 147 | 93 | 1 | 66 | 212 | 53 | 189 | 1.95e-14 | 70.9 |
| MS.gene001078.t1 | AT2G46510 | 41.975 | 81 | 47 | 0 | 42 | 122 | 370 | 450 | 2.55e-14 | 72.4 |
| MS.gene001078.t1 | AT4G17880 | 31.056 | 161 | 104 | 3 | 55 | 214 | 404 | 558 | 6.70e-13 | 68.2 |
| MS.gene001078.t1 | AT1G32640 | 44.118 | 68 | 38 | 0 | 55 | 122 | 440 | 507 | 1.34e-12 | 67.4 |
| MS.gene001078.t1 | AT4G29930 | 29.630 | 162 | 98 | 3 | 66 | 211 | 53 | 214 | 1.72e-12 | 65.9 |
| MS.gene001078.t1 | AT4G09820 | 29.143 | 175 | 95 | 6 | 69 | 240 | 365 | 513 | 1.94e-12 | 66.6 |
| MS.gene001078.t1 | AT5G57150 | 29.775 | 178 | 117 | 5 | 66 | 237 | 53 | 228 | 2.32e-12 | 65.1 |
| MS.gene001078.t1 | AT4G29930 | 29.630 | 162 | 98 | 3 | 66 | 211 | 53 | 214 | 2.79e-12 | 65.1 |
| MS.gene001078.t1 | AT4G29930 | 29.630 | 162 | 98 | 3 | 66 | 211 | 53 | 214 | 2.79e-12 | 65.1 |
| MS.gene001078.t1 | AT1G01260 | 41.667 | 84 | 49 | 0 | 55 | 138 | 421 | 504 | 3.58e-12 | 65.9 |
| MS.gene001078.t1 | AT1G01260 | 41.667 | 84 | 49 | 0 | 55 | 138 | 421 | 504 | 3.58e-12 | 65.9 |
| MS.gene001078.t1 | AT1G01260 | 41.667 | 84 | 49 | 0 | 55 | 138 | 421 | 504 | 3.58e-12 | 65.9 |
| MS.gene001078.t1 | AT2G22760 | 25.444 | 169 | 104 | 3 | 69 | 227 | 121 | 277 | 3.76e-12 | 65.1 |
| MS.gene001078.t1 | AT4G00870 | 30.000 | 160 | 94 | 6 | 59 | 209 | 239 | 389 | 4.16e-12 | 65.5 |
| MS.gene001078.t1 | AT4G29930 | 44.615 | 65 | 36 | 0 | 66 | 130 | 53 | 117 | 4.77e-12 | 63.2 |
| MS.gene001078.t1 | AT5G57150 | 32.026 | 153 | 96 | 5 | 66 | 212 | 54 | 204 | 9.75e-12 | 63.2 |
| MS.gene001078.t1 | AT1G10610 | 47.945 | 73 | 33 | 1 | 56 | 123 | 151 | 223 | 1.11e-11 | 63.9 |
| MS.gene001078.t1 | AT1G10610 | 47.945 | 73 | 33 | 1 | 56 | 123 | 218 | 290 | 1.18e-11 | 64.3 |
| MS.gene001078.t1 | AT5G57150 | 32.026 | 153 | 96 | 5 | 66 | 212 | 54 | 204 | 1.36e-11 | 62.8 |
| MS.gene001078.t1 | AT1G10610 | 46.667 | 75 | 35 | 1 | 56 | 125 | 248 | 322 | 1.38e-11 | 64.3 |
| MS.gene001078.t1 | AT5G57150 | 32.026 | 153 | 96 | 5 | 66 | 212 | 53 | 203 | 1.60e-11 | 62.4 |
| MS.gene001078.t1 | AT2G22760 | 25.000 | 160 | 98 | 3 | 69 | 218 | 121 | 268 | 3.18e-11 | 62.4 |
| MS.gene001078.t1 | AT5G57150 | 32.026 | 153 | 96 | 5 | 66 | 212 | 54 | 204 | 4.68e-11 | 61.6 |
Find 53 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGATACCTTGCTAATCTT+TGG | 0.307734 | 3.4:-24236473 | None:intergenic |
| TGCTTCCAAACCAGGTGTTT+TGG | 0.321052 | 3.4:+24237753 | MS.gene001078:CDS |
| GGCAATGGCATAAATGATTT+AGG | 0.332588 | 3.4:-24237425 | None:intergenic |
| AACTGTTCTTTAAGTTGAAC+TGG | 0.363366 | 3.4:-24237473 | None:intergenic |
| GAGGTTAGTGTAAGGGAAGG+GGG | 0.370874 | 3.4:+24237706 | MS.gene001078:CDS |
| TCAGCGATGAGACTCTTTGA+TGG | 0.390318 | 3.4:-24236395 | None:intergenic |
| ATGGATAAAGTTTCAATACT+TGG | 0.403138 | 3.4:+24237329 | MS.gene001078:CDS |
| CGAGACCAAAACACCTGGTT+TGG | 0.403922 | 3.4:-24237758 | None:intergenic |
| AGCAGTATTGTTGAAAGCAT+TGG | 0.405039 | 3.4:+24238656 | MS.gene001078:CDS |
| AGAGGTTAGTGTAAGGGAAG+GGG | 0.415000 | 3.4:+24237705 | MS.gene001078:CDS |
| ATCATCAAAATTATCTATGA+TGG | 0.425712 | 3.4:-24236324 | None:intergenic |
| TGCAGGTAGAGGTTAGTGTA+AGG | 0.441298 | 3.4:+24237698 | MS.gene001078:intron |
| TGGATAAAGTTTCAATACTT+GGG | 0.444870 | 3.4:+24237330 | MS.gene001078:CDS |
| GAGAAGAAGATGAGAAAAGA+TGG | 0.452397 | 3.4:+24236194 | None:intergenic |
| AAGATGAGAAAAGATGGAAA+TGG | 0.473387 | 3.4:+24236200 | None:intergenic |
| GCAGGTAGAGGTTAGTGTAA+GGG | 0.480291 | 3.4:+24237699 | MS.gene001078:intron |
| AAGTAAATAAATACCTCTGT+TGG | 0.492091 | 3.4:-24237530 | None:intergenic |
| GGATGCTGTCGACTACTTGA+AGG | 0.496639 | 3.4:+24237352 | MS.gene001078:CDS |
| GCTGACATGGTAGATGTCAT+AGG | 0.500385 | 3.4:-24237446 | None:intergenic |
| TGAAACAACTTATGTTAGCC+TGG | 0.501626 | 3.4:-24237819 | None:intergenic |
| TTCTTTAAGTTGAACTGGAA+GGG | 0.505976 | 3.4:-24237468 | None:intergenic |
| ATGATTTGTGCTTCCAAACC+AGG | 0.508952 | 3.4:+24237745 | MS.gene001078:CDS |
| CCTTGGATCGGATGTTCACC+AGG | 0.510168 | 3.4:+24237801 | MS.gene001078:CDS |
| GGACCGAAAAGCGAAGAAGA+AGG | 0.532518 | 3.4:+24236367 | MS.gene001078:CDS |
| AAATAAATACCTCTGTTGGT+TGG | 0.533206 | 3.4:-24237526 | None:intergenic |
| TTGGGAAGATGAAGAACCAT+AGG | 0.537979 | 3.4:+24236270 | MS.gene001078:CDS |
| TAGAGGTTAGTGTAAGGGAA+GGG | 0.540206 | 3.4:+24237704 | MS.gene001078:CDS |
| CTAATGAGAGTGTTGATGTT+GGG | 0.543283 | 3.4:+24236252 | MS.gene001078:CDS |
| GTTCTTTAAGTTGAACTGGA+AGG | 0.561089 | 3.4:-24237469 | None:intergenic |
| TTGAACTGGAAGGGCTGACA+TGG | 0.561404 | 3.4:-24237459 | None:intergenic |
| ATGATGACATTAGATAGCCT+TGG | 0.561509 | 3.4:+24237784 | MS.gene001078:CDS |
| GACATTAGATAGCCTTGGAT+CGG | 0.562136 | 3.4:+24237789 | MS.gene001078:CDS |
| AGGTTAGTGTAAGGGAAGGG+GGG | 0.566704 | 3.4:+24237707 | MS.gene001078:CDS |
| GTAGAGGTTAGTGTAAGGGA+AGG | 0.567309 | 3.4:+24237703 | MS.gene001078:CDS |
| TGAAAATTGTGTTGCTGAGG+GGG | 0.581516 | 3.4:+24236346 | MS.gene001078:CDS |
| TCTAGATGTGTTCAAAGCTG+AGG | 0.585169 | 3.4:+24237852 | MS.gene001078:CDS |
| GGATAAAGTTTCAATACTTG+GGG | 0.586418 | 3.4:+24237331 | MS.gene001078:CDS |
| CCTGGTGAACATCCGATCCA+AGG | 0.588925 | 3.4:-24237801 | None:intergenic |
| GGAAATGGAGTGGTTGACAA+AGG | 0.589998 | 3.4:+24236215 | MS.gene001078:CDS |
| TCATCGCTGAGAGGAAGCGA+AGG | 0.590161 | 3.4:+24236408 | MS.gene001078:CDS |
| ATGGTAGATGTCATAGGCAA+TGG | 0.592443 | 3.4:-24237440 | None:intergenic |
| ATGAAAATTGTGTTGCTGAG+GGG | 0.598682 | 3.4:+24236345 | MS.gene001078:CDS |
| TCTAATGAGAGTGTTGATGT+TGG | 0.621197 | 3.4:+24236251 | MS.gene001078:CDS |
| TCAGCAACACAATAAAGACC+AGG | 0.624613 | 3.4:+24238611 | MS.gene001078:intron |
| TGTTGTGCCAAAGATTAGCA+AGG | 0.628908 | 3.4:+24236466 | MS.gene001078:CDS |
| ACACAATAAAGACCAGGAGT+TGG | 0.633720 | 3.4:+24238617 | MS.gene001078:CDS |
| TGATGAAAATTGTGTTGCTG+AGG | 0.638841 | 3.4:+24236343 | MS.gene001078:CDS |
| GATGAAAATTGTGTTGCTGA+GGG | 0.642802 | 3.4:+24236344 | MS.gene001078:CDS |
| TGGCATAAATGATTTAGGAG+AGG | 0.645303 | 3.4:-24237420 | None:intergenic |
| GAAGAACCATAGGAAAAGTG+AGG | 0.656724 | 3.4:+24236280 | MS.gene001078:CDS |
| CAAAGAGTCTCATCGCTGAG+AGG | 0.675915 | 3.4:+24236399 | MS.gene001078:CDS |
| GAGAAAAGATGGAAATGGAG+TGG | 0.701649 | 3.4:+24236205 | MS.gene001078:CDS |
| ATAGTCGAGACCAAAACACC+TGG | 0.710993 | 3.4:-24237763 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTTATATTAATTT+TGG | + | chr3.4:24238573-24238592 | MS.gene001078:intron | 0.0% |
| !! | AAATTATAAAATAAATGACA+GGG | - | chr3.4:24237927-24237946 | None:intergenic | 10.0% |
| !! | TATTTATTCACTTTATATAT+AGG | + | chr3.4:24237632-24237651 | MS.gene001078:intron | 10.0% |
| !! | TTATGTATATTTATTCATAT+GGG | + | chr3.4:24236819-24236838 | MS.gene001078:intron | 10.0% |
| !! | TTTATGTATATTTATTCATA+TGG | + | chr3.4:24236818-24236837 | MS.gene001078:intron | 10.0% |
| !!! | AAATATTAGTTTAAAAAATG+GGG | - | chr3.4:24236901-24236920 | None:intergenic | 10.0% |
| !!! | ATAAAGTGAATAAATATTTT+TGG | - | chr3.4:24237628-24237647 | None:intergenic | 10.0% |
| !!! | ATATATGAGATTTTTATTAT+TGG | + | chr3.4:24238383-24238402 | MS.gene001078:intron | 10.0% |
| !!! | CAAATATTAGTTTAAAAAAT+GGG | - | chr3.4:24236902-24236921 | None:intergenic | 10.0% |
| !!! | TAAAGTGAATAAATATTTTT+GGG | - | chr3.4:24237627-24237646 | None:intergenic | 10.0% |
| !!! | TCAAATATTAGTTTAAAAAA+TGG | - | chr3.4:24236903-24236922 | None:intergenic | 10.0% |
| !! | AAATACATATACTTGTATTA+TGG | - | chr3.4:24237295-24237314 | None:intergenic | 15.0% |
| !! | ATTGTCTTATACAAAAATTA+AGG | - | chr3.4:24237100-24237119 | None:intergenic | 15.0% |
| !! | GAAATTATAAAATAAATGAC+AGG | - | chr3.4:24237928-24237947 | None:intergenic | 15.0% |
| !! | TATTATTATTAGTGAAAAGA+CGG | + | chr3.4:24236617-24236636 | MS.gene001078:intron | 15.0% |
| !! | TTGTCTTATACAAAAATTAA+GGG | - | chr3.4:24237099-24237118 | None:intergenic | 15.0% |
| !!! | AATATTAGTTTAAAAAATGG+GGG | - | chr3.4:24236900-24236919 | None:intergenic | 15.0% |
| !!! | ACTCTTTTTTTTTTTTTTTG+TGG | + | chr3.4:24238456-24238475 | MS.gene001078:intron | 15.0% |
| !! | AAAAAAAAAAAAGCAGATGA+CGG | - | chr3.4:24236655-24236674 | None:intergenic | 20.0% |
| !! | AATAATATGATAGTATTTGC+AGG | + | chr3.4:24237681-24237700 | MS.gene001078:intron | 20.0% |
| !! | ATCATCAAAATTATCTATGA+TGG | - | chr3.4:24236327-24236346 | None:intergenic | 20.0% |
| !! | ATTATAAACTAAATAATCGC+CGG | - | chr3.4:24238055-24238074 | None:intergenic | 20.0% |
| !! | ATTATTATTAGTGAAAAGAC+GGG | + | chr3.4:24236618-24236637 | MS.gene001078:intron | 20.0% |
| !! | CATAGGTTATTAACAATATT+TGG | + | chr3.4:24237072-24237091 | MS.gene001078:intron | 20.0% |
| !! | GATAAAATAGTTTAAACGAA+GGG | + | chr3.4:24237580-24237599 | MS.gene001078:intron | 20.0% |
| !!! | AAATATTTGGTGTTTGAATT+TGG | + | chr3.4:24238417-24238436 | MS.gene001078:intron | 20.0% |
| !!! | ATATTAGTTTAAAAAATGGG+GGG | - | chr3.4:24236899-24236918 | None:intergenic | 20.0% |
| !!! | CAAAATTGTCATTTCTAAAA+AGG | + | chr3.4:24237558-24237577 | MS.gene001078:intron | 20.0% |
| !!! | CTTTTTTTTTTTTTTTGTGG+TGG | + | chr3.4:24238459-24238478 | MS.gene001078:intron | 20.0% |
| !!! | GCAATCTTTTAAATTATGTT+AGG | + | chr3.4:24236924-24236943 | MS.gene001078:intron | 20.0% |
| !!! | GGCTTTTAATAACAAATATT+TGG | + | chr3.4:24238404-24238423 | MS.gene001078:intron | 20.0% |
| !!! | TATTTCATTTCTTTTACAGA+TGG | + | chr3.4:24237310-24237329 | MS.gene001078:intron | 20.0% |
| !!! | TTTTTATCATGATCACATAT+TGG | - | chr3.4:24237984-24238003 | None:intergenic | 20.0% |
| ! | AAAAAAAAAAAGCAGATGAC+GGG | - | chr3.4:24236654-24236673 | None:intergenic | 25.0% |
| ! | AAGTAAATAAATACCTCTGT+TGG | - | chr3.4:24237533-24237552 | None:intergenic | 25.0% |
| ! | ACATATACTTGTATTATGGA+GGG | - | chr3.4:24237291-24237310 | None:intergenic | 25.0% |
| ! | ATGGATAAAGTTTCAATACT+TGG | + | chr3.4:24237329-24237348 | MS.gene001078:CDS | 25.0% |
| ! | GGATAAAATAGTTTAAACGA+AGG | + | chr3.4:24237579-24237598 | MS.gene001078:intron | 25.0% |
| ! | TACATATACTTGTATTATGG+AGG | - | chr3.4:24237292-24237311 | None:intergenic | 25.0% |
| ! | TGGATAAAGTTTCAATACTT+GGG | + | chr3.4:24237330-24237349 | MS.gene001078:CDS | 25.0% |
| !! | AAAAATCAAAGATGATTTGC+TGG | - | chr3.4:24238306-24238325 | None:intergenic | 25.0% |
| !! | GTTTTATGTGCTTGAATTAT+AGG | - | chr3.4:24236773-24236792 | None:intergenic | 25.0% |
| !!! | AGTGAATAAATATTTTTGGG+TGG | - | chr3.4:24237624-24237643 | None:intergenic | 25.0% |
| !!! | CTAAACTTTTTAAAGCATAC+CGG | + | chr3.4:24238033-24238052 | MS.gene001078:intron | 25.0% |
| AAATAAATACCTCTGTTGGT+TGG | - | chr3.4:24237529-24237548 | None:intergenic | 30.0% | |
| CTTGTTTGAGCTAAGAAAAA+AGG | - | chr3.4:24237255-24237274 | None:intergenic | 30.0% | |
| GGATAAAGTTTCAATACTTG+GGG | + | chr3.4:24237331-24237350 | MS.gene001078:CDS | 30.0% | |
| GTTTAAACGAAGGGTAAAAA+TGG | + | chr3.4:24237589-24237608 | MS.gene001078:intron | 30.0% | |
| TATGATACCTTGCTAATCTT+TGG | - | chr3.4:24236476-24236495 | None:intergenic | 30.0% | |
| TTTAGTTGCTCTTACTACAT+AGG | + | chr3.4:24237055-24237074 | MS.gene001078:intron | 30.0% | |
| !! | AACTGTTCTTTAAGTTGAAC+TGG | - | chr3.4:24237476-24237495 | None:intergenic | 30.0% |
| !! | AATACTGCTTTTATTTGCCT+GGG | - | chr3.4:24238645-24238664 | None:intergenic | 30.0% |
| !! | TTCTTTAAGTTGAACTGGAA+GGG | - | chr3.4:24237471-24237490 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTTGTGGTGGC+CGG | + | chr3.4:24238463-24238482 | MS.gene001078:intron | 30.0% |
| ATACTTGTATTATGGAGGGT+TGG | - | chr3.4:24237287-24237306 | None:intergenic | 35.0% | |
| ATGATAGTATTTGCAGGTAG+AGG | + | chr3.4:24237687-24237706 | MS.gene001078:intron | 35.0% | |
| ATGATGACATTAGATAGCCT+TGG | + | chr3.4:24237784-24237803 | MS.gene001078:CDS | 35.0% | |
| ATGATGTTGATCGTGATGAA+TGG | - | chr3.4:24236693-24236712 | None:intergenic | 35.0% | |
| GGCAATGGCATAAATGATTT+AGG | - | chr3.4:24237428-24237447 | None:intergenic | 35.0% | |
| GTTTGTGGTGATTATCAAGT+GGG | + | chr3.4:24238140-24238159 | MS.gene001078:intron | 35.0% | |
| TGAAACAACTTATGTTAGCC+TGG | - | chr3.4:24237822-24237841 | None:intergenic | 35.0% | |
| TGCATAATATATGCAAGCTC+TGG | - | chr3.4:24238499-24238518 | None:intergenic | 35.0% | |
| TGGCATAAATGATTTAGGAG+AGG | - | chr3.4:24237423-24237442 | None:intergenic | 35.0% | |
| TGTCAAGTTAAGTGATCCTA+TGG | + | chr3.4:24238106-24238125 | MS.gene001078:intron | 35.0% | |
| TGTTTGTGGTGATTATCAAG+TGG | + | chr3.4:24238139-24238158 | MS.gene001078:intron | 35.0% | |
| ! | AGCAGTATTGTTGAAAGCAT+TGG | + | chr3.4:24238656-24238675 | MS.gene001078:CDS | 35.0% |
| ! | ATGAAAATTGTGTTGCTGAG+GGG | + | chr3.4:24236345-24236364 | MS.gene001078:CDS | 35.0% |
| ! | GATGAAAATTGTGTTGCTGA+GGG | + | chr3.4:24236344-24236363 | MS.gene001078:CDS | 35.0% |
| ! | TGATGAAAATTGTGTTGCTG+AGG | + | chr3.4:24236343-24236362 | MS.gene001078:CDS | 35.0% |
| !! | ATACTGCTTTTATTTGCCTG+GGG | - | chr3.4:24238644-24238663 | None:intergenic | 35.0% |
| !! | CAATACTGCTTTTATTTGCC+TGG | - | chr3.4:24238646-24238665 | None:intergenic | 35.0% |
| !! | CTAATGAGAGTGTTGATGTT+GGG | + | chr3.4:24236252-24236271 | MS.gene001078:CDS | 35.0% |
| !! | GGGTATGATTGTTTTGTATC+TGG | + | chr3.4:24236839-24236858 | MS.gene001078:intron | 35.0% |
| !! | GTTCTTTAAGTTGAACTGGA+AGG | - | chr3.4:24237472-24237491 | None:intergenic | 35.0% |
| !! | TATTGTCCTCACTTTTCCTA+TGG | - | chr3.4:24236289-24236308 | None:intergenic | 35.0% |
| !! | TCTAATGAGAGTGTTGATGT+TGG | + | chr3.4:24236251-24236270 | MS.gene001078:CDS | 35.0% |
| !! | TTTCCTTCTTCTTCGCTTTT+CGG | - | chr3.4:24236373-24236392 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTTGTGGTGGCC+GGG | + | chr3.4:24238464-24238483 | MS.gene001078:intron | 35.0% |
| AAAAAAGGCTCAAGAGGTTG+TGG | - | chr3.4:24237240-24237259 | None:intergenic | 40.0% | |
| AAAAAGGCTCAAGAGGTTGT+GGG | - | chr3.4:24237239-24237258 | None:intergenic | 40.0% | |
| ACACAATAAAGACCAGGAGT+TGG | + | chr3.4:24238617-24238636 | MS.gene001078:CDS | 40.0% | |
| ATGGTAGATGTCATAGGCAA+TGG | - | chr3.4:24237443-24237462 | None:intergenic | 40.0% | |
| ATGGTGAGTGTGAATGTTTG+TGG | + | chr3.4:24238125-24238144 | MS.gene001078:intron | 40.0% | |
| ATGTTGATCGTGATGAATGG+AGG | - | chr3.4:24236690-24236709 | None:intergenic | 40.0% | |
| CAAACATTCACACTCACCAT+AGG | - | chr3.4:24238125-24238144 | None:intergenic | 40.0% | |
| CCTTAAAAACCAACCAACAG+AGG | + | chr3.4:24237517-24237536 | MS.gene001078:CDS | 40.0% | |
| GAAGAACCATAGGAAAAGTG+AGG | + | chr3.4:24236280-24236299 | MS.gene001078:CDS | 40.0% | |
| GAGAAAAGATGGAAATGGAG+TGG | + | chr3.4:24236205-24236224 | MS.gene001078:CDS | 40.0% | |
| GCTAAGAAAAAAGGCTCAAG+AGG | - | chr3.4:24237246-24237265 | None:intergenic | 40.0% | |
| TAGAGGTTAGTGTAAGGGAA+GGG | + | chr3.4:24237704-24237723 | MS.gene001078:CDS | 40.0% | |
| TCAGCAACACAATAAAGACC+AGG | + | chr3.4:24238611-24238630 | MS.gene001078:intron | 40.0% | |
| TCTAGATGTGTTCAAAGCTG+AGG | + | chr3.4:24237852-24237871 | MS.gene001078:CDS | 40.0% | |
| TGTTGTGCCAAAGATTAGCA+AGG | + | chr3.4:24236466-24236485 | MS.gene001078:CDS | 40.0% | |
| TTGGGAAGATGAAGAACCAT+AGG | + | chr3.4:24236270-24236289 | MS.gene001078:CDS | 40.0% | |
| ! | ATGATTTGTGCTTCCAAACC+AGG | + | chr3.4:24237745-24237764 | MS.gene001078:CDS | 40.0% |
| ! | GACATTAGATAGCCTTGGAT+CGG | + | chr3.4:24237789-24237808 | MS.gene001078:CDS | 40.0% |
| ! | TGAAAATTGTGTTGCTGAGG+GGG | + | chr3.4:24236346-24236365 | MS.gene001078:CDS | 40.0% |
| !! | TACTGCTTTTATTTGCCTGG+GGG | - | chr3.4:24238643-24238662 | None:intergenic | 40.0% |
| !!! | CCTCTGTTGGTTGGTTTTTA+AGG | - | chr3.4:24237520-24237539 | None:intergenic | 40.0% |
| !!! | TTTTTTTTTTGTGGTGGCCG+GGG | + | chr3.4:24238465-24238484 | MS.gene001078:intron | 40.0% |
| AGAGGTTAGTGTAAGGGAAG+GGG | + | chr3.4:24237705-24237724 | MS.gene001078:CDS | 45.0% | |
| AGAGGTTGTGGGTTTAAACG+AGG | - | chr3.4:24237228-24237247 | None:intergenic | 45.0% | |
| ATAGTCGAGACCAAAACACC+TGG | - | chr3.4:24237766-24237785 | None:intergenic | 45.0% | |
| ATGTGTGTGCTTAGCTCAGT+TGG | - | chr3.4:24238531-24238550 | None:intergenic | 45.0% | |
| GAGGTTGTGGGTTTAAACGA+GGG | - | chr3.4:24237227-24237246 | None:intergenic | 45.0% | |
| GCAGGTAGAGGTTAGTGTAA+GGG | + | chr3.4:24237699-24237718 | MS.gene001078:intron | 45.0% | |
| GCTGACATGGTAGATGTCAT+AGG | - | chr3.4:24237449-24237468 | None:intergenic | 45.0% | |
| GGAAATGGAGTGGTTGACAA+AGG | + | chr3.4:24236215-24236234 | MS.gene001078:CDS | 45.0% | |
| GTAGAGGTTAGTGTAAGGGA+AGG | + | chr3.4:24237703-24237722 | MS.gene001078:CDS | 45.0% | |
| TCAGCGATGAGACTCTTTGA+TGG | - | chr3.4:24236398-24236417 | None:intergenic | 45.0% | |
| TGCAGGTAGAGGTTAGTGTA+AGG | + | chr3.4:24237698-24237717 | MS.gene001078:intron | 45.0% | |
| ! | TGCTTCCAAACCAGGTGTTT+TGG | + | chr3.4:24237753-24237772 | MS.gene001078:CDS | 45.0% |
| !! | AAATATACATAAATTATATT+TGG | - | chr3.4:24236811-24236830 | None:intergenic | 5.0% |
| !!! | AATTTTGAAATAATAATTAA+TGG | - | chr3.4:24237950-24237969 | None:intergenic | 5.0% |
| AGGTTAGTGTAAGGGAAGGG+GGG | + | chr3.4:24237707-24237726 | MS.gene001078:CDS | 50.0% | |
| CAAAGAGTCTCATCGCTGAG+AGG | + | chr3.4:24236399-24236418 | MS.gene001078:CDS | 50.0% | |
| CGAGACCAAAACACCTGGTT+TGG | - | chr3.4:24237761-24237780 | None:intergenic | 50.0% | |
| GAGGTTAGTGTAAGGGAAGG+GGG | + | chr3.4:24237706-24237725 | MS.gene001078:CDS | 50.0% | |
| GGACCGAAAAGCGAAGAAGA+AGG | + | chr3.4:24236367-24236386 | MS.gene001078:CDS | 50.0% | |
| TGTGCTTAGCTCAGTTGGCA+TGG | - | chr3.4:24238526-24238545 | None:intergenic | 50.0% | |
| TTGAACTGGAAGGGCTGACA+TGG | - | chr3.4:24237462-24237481 | None:intergenic | 50.0% | |
| ! | GGATGCTGTCGACTACTTGA+AGG | + | chr3.4:24237352-24237371 | MS.gene001078:CDS | 50.0% |
| !! | AAGCTCTGGAGTTCAAACCC+CGG | - | chr3.4:24238485-24238504 | None:intergenic | 50.0% |
| CCTGGTGAACATCCGATCCA+AGG | - | chr3.4:24237804-24237823 | None:intergenic | 55.0% | |
| CCTTGGATCGGATGTTCACC+AGG | + | chr3.4:24237801-24237820 | MS.gene001078:CDS | 55.0% | |
| TCATCGCTGAGAGGAAGCGA+AGG | + | chr3.4:24236408-24236427 | MS.gene001078:CDS | 55.0% | |
| AAGACCAGGAGTTGGCCCCC+AGG | + | chr3.4:24238625-24238644 | MS.gene001078:CDS | 65.0% | |
| TTTGCCTGGGGGCCAACTCC+TGG | - | chr3.4:24238632-24238651 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 24236203 | 24238689 | 24236203 | ID=MS.gene001078 |
| chr3.4 | mRNA | 24236203 | 24238689 | 24236203 | ID=MS.gene001078.t1;Parent=MS.gene001078 |
| chr3.4 | exon | 24236203 | 24236487 | 24236203 | ID=MS.gene001078.t1.exon1;Parent=MS.gene001078.t1 |
| chr3.4 | CDS | 24236203 | 24236487 | 24236203 | ID=cds.MS.gene001078.t1;Parent=MS.gene001078.t1 |
| chr3.4 | exon | 24237329 | 24237538 | 24237329 | ID=MS.gene001078.t1.exon2;Parent=MS.gene001078.t1 |
| chr3.4 | CDS | 24237329 | 24237538 | 24237329 | ID=cds.MS.gene001078.t1;Parent=MS.gene001078.t1 |
| chr3.4 | exon | 24237703 | 24237873 | 24237703 | ID=MS.gene001078.t1.exon3;Parent=MS.gene001078.t1 |
| chr3.4 | CDS | 24237703 | 24237873 | 24237703 | ID=cds.MS.gene001078.t1;Parent=MS.gene001078.t1 |
| chr3.4 | exon | 24238615 | 24238689 | 24238615 | ID=MS.gene001078.t1.exon4;Parent=MS.gene001078.t1 |
| chr3.4 | CDS | 24238615 | 24238689 | 24238615 | ID=cds.MS.gene001078.t1;Parent=MS.gene001078.t1 |
| Gene Sequence |
| Protein sequence |
