AlfalfaGEDB | MS.gene001120

M. sativa cultivar XinJiangDaYe / MS.gene001120

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005634 GO:0006355 GO:0008144 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0017076 GO:0019219 GO:0019222 GO:0030554 GO:0031323 GO:0031326 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097367 GO:0110165 GO:1901265 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF08879.13 PF08880.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001120.t1	XP_003612622.1	94.6	332	10	1	1	332	1	324	3.70E-149	537.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001120.t1	Q6ZIK5	66.3	98	25	2	15	104	63	160	1.4e-32	141.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001120.t1	G7K6W0	94.6	332	10	1	1	332	1	324	2.7e-149	537.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene001120.t1	TF	GRF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001120.t1	MTR_5g027030	92.470	332	17	1	1	332	1	324	0.0	587
MS.gene001120.t1	MTR_0001s0490	47.867	211	75	9	16	213	25	213	1.87e-49	168
MS.gene001120.t1	MTR_4g125490	34.432	273	143	7	16	257	9	276	3.96e-42	151
MS.gene001120.t1	MTR_2g041430	60.177	113	29	2	16	112	7	119	1.64e-40	145
MS.gene001120.t1	MTR_2g041430	60.177	113	29	2	16	112	7	119	1.72e-40	145
MS.gene001120.t1	MTR_2g041430	60.177	113	29	2	16	112	7	119	1.83e-40	145
MS.gene001120.t1	MTR_8g020560	58.333	108	33	2	17	112	12	119	2.67e-39	142
MS.gene001120.t1	MTR_1g017490	56.897	116	34	2	16	115	11	126	9.02e-37	138
MS.gene001120.t1	MTR_1g017490	56.897	116	34	2	16	115	144	259	1.33e-36	139
MS.gene001120.t1	MTR_7g104050	59.649	114	34	4	17	118	79	192	1.40e-35	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001120.t1	AT3G13960	57.273	110	35	2	15	112	15	124	1.10e-38	141
MS.gene001120.t1	AT4G37740	40.777	206	96	6	16	202	164	362	5.61e-38	142
MS.gene001120.t1	AT3G52910	56.250	112	33	3	17	112	83	194	2.83e-33	127
MS.gene001120.t1	AT2G36400	54.783	115	37	3	17	116	77	191	3.80e-33	127
MS.gene001120.t1	AT2G22840	54.128	109	36	2	16	112	133	239	5.32e-31	122
MS.gene001120.t1	AT2G06200	50.400	125	39	3	9	110	38	162	1.49e-30	117
MS.gene001120.t1	AT2G06200	52.066	121	35	3	13	110	3	123	2.56e-30	115
MS.gene001120.t1	AT4G24150	46.610	118	47	2	17	118	112	229	4.12e-24	102
MS.gene001120.t1	AT4G24150	46.610	118	47	2	17	118	150	267	8.87e-24	101
MS.gene001120.t1	AT5G53660	49.485	97	44	1	16	112	59	150	1.29e-22	97.4

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Find 77 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGACCCAGAACCAGGT+AGG	0.671324	5.2:-18025173	MS.gene001120:CDS
AACCTCTTACAGAAGGATCT+AGG	0.500686	5.2:-18022997	MS.gene001120:CDS
AACGACGTCGAATCATATGA+CGG	0.698475	5.2:+18025082	None:intergenic
AAGAAGCATAGGGTCCATGT+GGG	0.631241	5.2:+18024825	None:intergenic
AAGGTTTAAGTTTCAATCTT+GGG	0.373864	5.2:-18024858	MS.gene001120:CDS
AATGGAGTATAGGCCAAGCA+AGG	0.658290	5.2:-18022686	MS.gene001120:CDS
ACACTTCCTTTGCATACAAA+TGG	0.453684	5.2:-18024889	MS.gene001120:CDS
ACTGTGAACGGTGGATGAGT+TGG	0.621139	5.2:+18025419	None:intergenic
ACTTCACAGCAACTTGGTGC+TGG	0.533655	5.2:-18024973	MS.gene001120:CDS
ACTTCACTTCAGATGGGATG+TGG	0.577262	5.2:-18022951	MS.gene001120:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGCAAAAGACTACATG+TGG	+	chr5.2:18024956-18024975	None:intergenic	30.0%
AACACACTCAATAATAGGTT+TGG	-	chr5.2:18025058-18025077	MS.gene001120:CDS	30.0%
AACTGAACACACTCAATAAT+AGG	-	chr5.2:18025053-18025072	MS.gene001120:CDS	30.0%
AAGTTACATAACATGTGATG+TGG	-	chr5.2:18023691-18023710	MS.gene001120:intron	30.0%
AGTTGAATCATTAAGGCTTA+AGG	+	chr5.2:18024893-18024912	None:intergenic	30.0%
ATAAGGAAGATTAACGTTGT+TGG	+	chr5.2:18022843-18022862	None:intergenic	30.0%
ATTGAAACTTAAACCTTCAC+GGG	+	chr5.2:18023242-18023261	None:intergenic	30.0%
ATTGGAAATCAAGGGAATTA+TGG	-	chr5.2:18024077-18024096	MS.gene001120:intron	30.0%
CAAACACTATTTCAGAATCA+AGG	-	chr5.2:18025200-18025219	MS.gene001120:intron	30.0%
CACATTATTTATTCGATACC+TGG	-	chr5.2:18023999-18024018	MS.gene001120:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	18022651	18025474	18022651	ID=MS.gene001120
chr5.2	mRNA	18022651	18025474	18022651	ID=MS.gene001120.t1;Parent=MS.gene001120
chr5.2	exon	18025294	18025474	18025294	ID=MS.gene001120.t1.exon1;Parent=MS.gene001120.t1
chr5.2	CDS	18025294	18025474	18025294	ID=cds.MS.gene001120.t1;Parent=MS.gene001120.t1
chr5.2	exon	18024796	18025213	18024796	ID=MS.gene001120.t1.exon2;Parent=MS.gene001120.t1
chr5.2	CDS	18024796	18025213	18024796	ID=cds.MS.gene001120.t1;Parent=MS.gene001120.t1
chr5.2	exon	18022651	18023050	18022651	ID=MS.gene001120.t1.exon3;Parent=MS.gene001120.t1
chr5.2	CDS	18022651	18023050	18022651	ID=cds.MS.gene001120.t1;Parent=MS.gene001120.t1

Gene Sequence

>MS.gene001120

ATGAGCATTCAACAACCGCCGTTGATGTGGTCACCAACTCATCCACCGTTCACAGTCTCCCAATGGCAAGAGCTAGAACATCAAGCTCTCATCTTCAAGTATCTCAAAGCTGGTTTATCTGTTCCTCCTGACCTCCTTTTACCTATTCGGAAAAGTCTTCAATTCATGTCTCATCCATCTCGTAAGTACCCAACAACGTTAATCTTCCTTATTTTGTCTCTATTTTGATTTACAACTATAAAGTTTTGATTTTTGTTTCAGTGGGTTATTATGGAAAAAAAATTGACCCAGAACCAGGTAGGTGTAGAAGAACAGATGGCAAAAAATGGAGATGTGCTAGGGATGCACATCCTGATTCTAAGTACTGTGACCGTCATATGATTCGACGTCGTTACCGTTCAAGAAAGCCTGTGGAATCTTCTTCTTCTTCTTCTTGTTCACAATCTTCATCTTCAGTTTCAGTTTCTACTACTAGTACTACTTCACAGCAACTTGGTGCTGGTGGTTCTAGTGGAAGTACTAGTACTGTTTCTGCTTCTGTTACTGCTACTTCAACTTTTCATACACTTCCTTTGCATACAAATGGTACCCGTGAAGGTTTAAGTTTCAATCTTGGGAACACCATGCCCCACATGGACCCTATGCTTCTTCCTCTTCAGGGTTCTAAGAAACCTTATAGGTATGTTTCTTTTTTTGATTCATTTTGTTTCTTTTGTTTTCAATAAGGCAACACTTTCTTCTTTTGTATAACCCTCTTGTTCGGGGGGAGGGACCTTAGTAATCCAGAGTTCGGCCGGGAGGTAAGTAAAGTCTGGCAAAAAATTGTTTCACTTAGAATTTGCTGTTTTTTTTGTTGTTGTTTATTTGTGTGTGTTCAATGTTTGTGTATTTGTGTTTTGGGGTGTTTTGCCTTGTGGGGTTTTGAGGAAATGATTGCCATGATTTCTTGTGAAGAGTTATTATTGTTGTTCTTTCCTTTTTGTTTACACAATTGATTTTATATCTTTATGTTAGATGGAAAACATGGTAGTTGTGATGTTAAGTTACATAACATGTGATGTGGATCCTTATCATGTGTGTGTGGGGTGAGATTTGAGAGTAAGGTGCAAGTCATCTGGCCATAGTTTTGGAGTTAGGCTTGTACTTTATATTGTTTTGACAAAGGCTTATACTTTATTTTATTCAACTTGGTTTGTGTGAATATGAAAGAATGCAGAAATAATTACTTAATCGGGTTTGGCATTGGTAAAAGATTTTGTGGATTGAATTGCCTTTTTGATGGTCATTTGAAATCATGACTTGGTATTCTGGGTTTTTACTTGTTCAAATATTTTGTTGAAATCCTTTTCACATTATTTATTCGATACCTGGTCATTGTTCGCCTTTTTAGATGTGAGTGAACTAAGAGGGCATATGATTTGATAAGATTGGAAATCAAGGGAATTATGGATGATTGTATAACTGAAACAATAACAAGAGAACTGATTTTTTGTGTGTGATAGAGTTAAAGCAATTAAGGAGAGGTAATTTCATTGTAGTCCACTAACCGACATTTGTCTTTAGTCTTAACCCTCCGGTTCCCAAGAGAAGAGGCTCTGGTAGTCCGGAGTTTGGTCATAACTAACCAACGTCTAACTAGCATCTAACTGCTGCCTGCTACTTGATGATTATCCAGAAAGGGTGGTTCATAGCTTTGAGCTGGTATTGTGGGATAACATGTTGAAGGAATTTGGAAATGTGCCATTTCATTTTATATCTATTTGGTGATATGATTTTTTAATTCTAGGCCATCAATTAGATGTCGTCATCTAATTGTTATTTGATGTCTTTCTTCTTCCTCCTACTTGCATTCTTGTTTGACTGTTTATTCTTTACTTTTAAATGGAACGCATTGTAGTCTTGGCTACAACTACATAAGTGTTCAATGCGATCTAACAAGGCTACACACTGTAGTCTTGTGATAGTTGTTTTTTTTTTTCCTTTTCCTGGTCCATCAATGGACATTGTCATTGATACTGTGTAGATGGCTATGAAATGAACATGCTGTAGTGGGAAATTTTGTTTTTTTTTTTAAATTTAAAAAAGAAAAAAAGAGAAATGGATTGAACATTATAGCAGGAGTTGTGTTTTGGTAATTTGAAATAAATGATTTTACTTTTTATAAGGAATTTGTAGGATCTGAGGTATGAAATGGATATTAATATTTTTATGAAGGTGGATTACTGAAGCATCTAAACTGCCTTAAGCCTTAATGATTCAACTCAATTCATGGCTACATGGCCTCGGTCTTAAACATCAGGATCCACATGTAGTCTTTTGCAATTTTTTTCTTAAGTATTTTAGAAGTTGTTGGTAATTTTCTATCATGCACACAAGTGAAATAAACGTACCATCATGATGTTAACTGAACACACTCAATAATAGGTTTGGACTGAACTCGGAAGCAGAGGAGAACAACCTCTTACAGAAGGATCTAGGAACTGTGAAGTATCAAGGTTATGACTTCACTTCAGATGGGATGTGGTATAATAACATGTCTCAGATTTCATCAAACACTATTTCAGAATCAAGGAATTGTTCTTCCATGGTTGACAACTACAACTTCCAACAGCGAACAACAAGAGAACCTGAGCTGCTTAACCTCGACGCTGCAAGATCCAAGGAAATTGTCTTTAACGGCCAGCTAGGTAGTTTGAAACAGGAATATCAATCCTCTCAGTCTCTCTTCAGTGACTGGCAGTGGAAGAAAGATTTAGCCTCCTCTGCAATGGAGTATAGGCCAAGCAAGGATTTTAACACCAATCCAGATGTCAATGTTGATTGA

Protein sequence

>MS.gene001120.t1

MSIQQPPLMWSPTHPPFTVSQWQELEHQALIFKYLKAGLSVPPDLLLPIRKSLQFMSHPSLGYYGKKIDPEPGRCRRTDGKKWRCARDAHPDSKYCDRHMIRRRYRSRKPVESSSSSSCSQSSSSVSVSTTSTTSQQLGAGGSSGSTSTVSASVTATSTFHTLPLHTNGTREGLSFNLGNTMPHMDPMLLPLQGSKKPYRFGLNSEAEENNLLQKDLGTVKYQGYDFTSDGMWYNNMSQISSNTISESRNCSSMVDNYNFQQRTTREPELLNLDAARSKEIVFNGQLGSLKQEYQSSQSLFSDWQWKKDLASSAMEYRPSKDFNTNPDVNVD