AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001120.t1 MTR_5g027030 92.470 332 17 1 1 332 1 324 0.0 587
MS.gene001120.t1 MTR_0001s0490 47.867 211 75 9 16 213 25 213 1.87e-49 168
MS.gene001120.t1 MTR_4g125490 34.432 273 143 7 16 257 9 276 3.96e-42 151
MS.gene001120.t1 MTR_2g041430 60.177 113 29 2 16 112 7 119 1.64e-40 145
MS.gene001120.t1 MTR_2g041430 60.177 113 29 2 16 112 7 119 1.72e-40 145
MS.gene001120.t1 MTR_2g041430 60.177 113 29 2 16 112 7 119 1.83e-40 145
MS.gene001120.t1 MTR_8g020560 58.333 108 33 2 17 112 12 119 2.67e-39 142
MS.gene001120.t1 MTR_1g017490 56.897 116 34 2 16 115 11 126 9.02e-37 138
MS.gene001120.t1 MTR_1g017490 56.897 116 34 2 16 115 144 259 1.33e-36 139
MS.gene001120.t1 MTR_7g104050 59.649 114 34 4 17 118 79 192 1.40e-35 132
MS.gene001120.t1 MTR_7g104050 59.649 114 34 4 17 118 79 192 1.45e-35 133
MS.gene001120.t1 MTR_3g092330 53.000 100 39 2 14 112 111 203 8.61e-27 110
MS.gene001120.t1 MTR_8g035910 36.810 163 72 4 15 170 48 186 6.96e-20 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001120.t1 AT3G13960 57.273 110 35 2 15 112 15 124 1.10e-38 141
MS.gene001120.t1 AT4G37740 40.777 206 96 6 16 202 164 362 5.61e-38 142
MS.gene001120.t1 AT3G52910 56.250 112 33 3 17 112 83 194 2.83e-33 127
MS.gene001120.t1 AT2G36400 54.783 115 37 3 17 116 77 191 3.80e-33 127
MS.gene001120.t1 AT2G22840 54.128 109 36 2 16 112 133 239 5.32e-31 122
MS.gene001120.t1 AT2G06200 50.400 125 39 3 9 110 38 162 1.49e-30 117
MS.gene001120.t1 AT2G06200 52.066 121 35 3 13 110 3 123 2.56e-30 115
MS.gene001120.t1 AT4G24150 46.610 118 47 2 17 118 112 229 4.12e-24 102
MS.gene001120.t1 AT4G24150 46.610 118 47 2 17 118 150 267 8.87e-24 101
MS.gene001120.t1 AT5G53660 49.485 97 44 1 16 112 59 150 1.29e-22 97.4
MS.gene001120.t1 AT4G24150 37.762 143 48 1 17 118 150 292 1.99e-21 95.1
MS.gene001120.t1 AT2G06200 72.917 48 11 1 65 110 4 51 6.46e-17 77.8
MS.gene001120.t1 AT2G45480 39.815 108 51 2 15 109 23 129 7.22e-17 80.1
MS.gene001120.t1 AT2G45480 39.815 108 51 2 15 109 21 127 2.28e-16 80.1
MS.gene001120.t1 AT2G45480 36.458 96 48 3 21 116 269 351 1.05e-12 68.9
MS.gene001120.t1 AT2G45480 39.815 108 51 2 15 109 23 129 2.34e-16 79.7
MS.gene001120.t1 AT2G45480 36.458 96 48 3 21 116 271 353 1.13e-12 68.9

Find 77 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTATGCTTCTTCCTCTTC+AGG 0.174652 5.2:-18024815 MS.gene001120:CDS
CTTCTACACCTACCTGGTTC+TGG 0.179105 5.2:+18025165 None:intergenic
TTTGTTTCAGTGGGTTATTA+TGG 0.331715 5.2:-18025201 MS.gene001120:intron
TTCTACACCTACCTGGTTCT+GGG 0.343240 5.2:+18025166 None:intergenic
TTCCTAGATCCTTCTGTAAG+AGG 0.359958 5.2:+18022995 None:intergenic
GAAGGTTTAAGTTTCAATCT+TGG 0.362165 5.2:-18024859 MS.gene001120:CDS
CCTATGCTTCTTCCTCTTCA+GGG 0.369011 5.2:-18024814 MS.gene001120:CDS
AAGGTTTAAGTTTCAATCTT+GGG 0.373864 5.2:-18024858 MS.gene001120:CDS
GATGTTCTAGCTCTTGCCAT+TGG 0.387285 5.2:+18025393 None:intergenic
TCCAAGGAAATTGTCTTTAA+CGG 0.387679 5.2:-18022796 MS.gene001120:CDS
TTTCAATCAACATTGACATC+TGG 0.399287 5.2:+18022649 None:intergenic
CCTCCTCTGCAATGGAGTAT+AGG 0.408064 5.2:-18022696 MS.gene001120:CDS
ATGTTCTAGCTCTTGCCATT+GGG 0.417081 5.2:+18025394 None:intergenic
GCCGTTAAAGACAATTTCCT+TGG 0.422082 5.2:+18022795 None:intergenic
CTCTCTTCAGTGACTGGCAG+TGG 0.424103 5.2:-18022732 MS.gene001120:CDS
GTTCTCTTGTTGTTCGCTGT+TGG 0.429758 5.2:+18022848 None:intergenic
AGGGTTCTAAGAAACCTTAT+AGG 0.432493 5.2:-18024795 MS.gene001120:intron
CTCAGTCTCTCTTCAGTGAC+TGG 0.441726 5.2:-18022738 MS.gene001120:CDS
CCAGCTAGGTAGTTTGAAAC+AGG 0.443147 5.2:-18022773 MS.gene001120:CDS
CTTGGTGCTGGTGGTTCTAG+TGG 0.451681 5.2:-18024961 MS.gene001120:CDS
ACACTTCCTTTGCATACAAA+TGG 0.453684 5.2:-18024889 MS.gene001120:CDS
CGGTCACAGTACTTAGAATC+AGG 0.455848 5.2:+18025102 None:intergenic
ATCTTCAAGTATCTCAAAGC+TGG 0.478992 5.2:-18025362 MS.gene001120:CDS
GGTTATGACTTCACTTCAGA+TGG 0.481110 5.2:-18022958 MS.gene001120:CDS
GATTGAAACTTAAACCTTCA+CGG 0.482977 5.2:+18024863 None:intergenic
CGAATAGGTAAAAGGAGGTC+AGG 0.485852 5.2:+18025326 None:intergenic
TTGGTGTTAAAATCCTTGCT+TGG 0.489894 5.2:+18022673 None:intergenic
ATCAAGGAATTGTTCTTCCA+TGG 0.491166 5.2:-18022887 MS.gene001120:CDS
ATTGAAACTTAAACCTTCAC+GGG 0.492388 5.2:+18024864 None:intergenic
ATCAACATTGACATCTGGAT+TGG 0.498766 5.2:+18022654 None:intergenic
AACCTCTTACAGAAGGATCT+AGG 0.500686 5.2:-18022997 MS.gene001120:CDS
CAAACACTATTTCAGAATCA+AGG 0.501303 5.2:-18022903 MS.gene001120:CDS
GCGTCGAGGTTAAGCAGCTC+AGG 0.512667 5.2:+18022826 None:intergenic
CTAGGAACTGTGAAGTATCA+AGG 0.513671 5.2:-18022979 MS.gene001120:CDS
ATTCCACAGGCTTTCTTGAA+CGG 0.519412 5.2:+18025058 None:intergenic
CCCTGAAGAGGAAGAAGCAT+AGG 0.524973 5.2:+18024814 None:intergenic
CCTGTTTCAAACTACCTAGC+TGG 0.525039 5.2:+18022773 None:intergenic
ATTGTCTTTAACGGCCAGCT+AGG 0.529877 5.2:-18022787 MS.gene001120:CDS
ACTTCACAGCAACTTGGTGC+TGG 0.533655 5.2:-18024973 MS.gene001120:CDS
TCTGTTCTTCTACACCTACC+TGG 0.541473 5.2:+18025159 None:intergenic
CATACAAATGGTACCCGTGA+AGG 0.542760 5.2:-18024877 MS.gene001120:CDS
TCACAGCAACTTGGTGCTGG+TGG 0.545124 5.2:-18024970 MS.gene001120:CDS
TAATAGGTTTGGACTGAACT+CGG 0.548879 5.2:-18023034 MS.gene001120:intron
CGGGTACCATTTGTATGCAA+AGG 0.550448 5.2:+18024883 None:intergenic
CCTATACTCCATTGCAGAGG+AGG 0.551750 5.2:+18022696 None:intergenic
TGGGAACACCATGCCCCACA+TGG 0.552810 5.2:-18024839 MS.gene001120:CDS
AGTACTACTTCACAGCAACT+TGG 0.553505 5.2:-18024979 MS.gene001120:CDS
CATAGGGTCCATGTGGGGCA+TGG 0.558053 5.2:+18024831 None:intergenic
AGATTTAGCCTCCTCTGCAA+TGG 0.559132 5.2:-18022704 MS.gene001120:CDS
TTCAACAACCGCCGTTGATG+TGG 0.565403 5.2:-18025445 MS.gene001120:CDS
TGCCATTGGGAGACTGTGAA+CGG 0.571539 5.2:+18025407 None:intergenic
ACTTCACTTCAGATGGGATG+TGG 0.577262 5.2:-18022951 MS.gene001120:CDS
CCTCGACGCTGCAAGATCCA+AGG 0.587152 5.2:-18022812 MS.gene001120:CDS
GAAGAAGAAGAAGATTCCAC+AGG 0.592735 5.2:+18025045 None:intergenic
CCTTGGATCTTGCAGCGTCG+AGG 0.593781 5.2:+18022812 None:intergenic
TGGACTGAACTCGGAAGCAG+AGG 0.606816 5.2:-18023025 MS.gene001120:CDS
GTTATGACTTCACTTCAGAT+GGG 0.610905 5.2:-18022957 MS.gene001120:CDS
CACCGTTCACAGTCTCCCAA+TGG 0.611493 5.2:-18025409 MS.gene001120:CDS
GGAGAACAACCTCTTACAGA+AGG 0.617644 5.2:-18023004 MS.gene001120:CDS
ACTGTGAACGGTGGATGAGT+TGG 0.621139 5.2:+18025419 None:intergenic
GGTAGGTGTAGAAGAACAGA+TGG 0.627953 5.2:-18025156 MS.gene001120:CDS
GGTTTCTTAGAACCCTGAAG+AGG 0.629209 5.2:+18024802 None:intergenic
CCTGAAGAGGAAGAAGCATA+GGG 0.630158 5.2:+18024815 None:intergenic
GTCACTGAAGAGAGACTGAG+AGG 0.630803 5.2:+18022741 None:intergenic
AAGAAGCATAGGGTCCATGT+GGG 0.631241 5.2:+18024825 None:intergenic
GAAGAAGCATAGGGTCCATG+TGG 0.633928 5.2:+18024824 None:intergenic
TGAGTTGGTGACCACATCAA+CGG 0.634344 5.2:+18025434 None:intergenic
GAAGTTGTAGTTGTCAACCA+TGG 0.647831 5.2:+18022870 None:intergenic
TTACCGTTCAAGAAAGCCTG+TGG 0.651222 5.2:-18025061 MS.gene001120:CDS
AATGGAGTATAGGCCAAGCA+AGG 0.658290 5.2:-18022686 MS.gene001120:CDS
AAATTGACCCAGAACCAGGT+AGG 0.671324 5.2:-18025173 MS.gene001120:CDS
TGGCCTATACTCCATTGCAG+AGG 0.676725 5.2:+18022693 None:intergenic
ATAGGTAAAAGGAGGTCAGG+AGG 0.695933 5.2:+18025329 None:intergenic
AACGACGTCGAATCATATGA+CGG 0.698475 5.2:+18025082 None:intergenic
AGAAGCATAGGGTCCATGTG+GGG 0.720767 5.2:+18024826 None:intergenic
CATTGGGAGACTGTGAACGG+TGG 0.744499 5.2:+18025410 None:intergenic
GTTGGTGACCACATCAACGG+CGG 0.749963 5.2:+18025437 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGATTTTACTTTTTATA+AGG - chr5.2:18024794-18024813 MS.gene001120:intron 10.0%
!! AAAAAAGAAAAAAAGAGAAA+TGG - chr5.2:18024729-18024748 MS.gene001120:intron 15.0%
!! CAAATAGATATAAAATGAAA+TGG + chr5.2:18024394-18024413 None:intergenic 15.0%
!!! ATACTTTATTTTATTCAACT+TGG - chr5.2:18023819-18023838 MS.gene001120:intron 15.0%
!!! CATTTCATTTTATATCTATT+TGG - chr5.2:18024392-18024411 MS.gene001120:intron 15.0%
!!! GGATATTAATATTTTTATGA+AGG - chr5.2:18024843-18024862 MS.gene001120:CDS 15.0%
!!! GTTTATTCTTTACTTTTAAA+TGG - chr5.2:18024513-18024532 MS.gene001120:intron 15.0%
!!! TATTAATATTTTTATGAAGG+TGG - chr5.2:18024846-18024865 MS.gene001120:CDS 15.0%
!!! TGATATGATTTTTTAATTCT+AGG - chr5.2:18024415-18024434 MS.gene001120:intron 15.0%
!!! TTTTATATCTTTATGTTAGA+TGG - chr5.2:18023646-18023665 MS.gene001120:intron 15.0%
!! AAAAAAGAAACATACCTATA+AGG + chr5.2:18023325-18023344 None:intergenic 20.0%
!! AATCAATTGTGTAAACAAAA+AGG + chr5.2:18023628-18023647 None:intergenic 20.0%
!! ATCAAAATAGAGACAAAATA+AGG + chr5.2:18022860-18022879 None:intergenic 20.0%
!! ATCGAATAAATAATGTGAAA+AGG + chr5.2:18023996-18024015 None:intergenic 20.0%
!! TGCAGAAATAATTACTTAAT+CGG - chr5.2:18023862-18023881 MS.gene001120:intron 20.0%
!!! ACTTTATATTGTTTTGACAA+AGG - chr5.2:18023793-18023812 MS.gene001120:intron 20.0%
!!! ACTTTTTATAAGGAATTTGT+AGG - chr5.2:18024804-18024823 MS.gene001120:CDS 20.0%
!!! TGTTTCTTTTGTTTTCAATA+AGG - chr5.2:18023355-18023374 MS.gene001120:intron 20.0%
!!! TTAAGTATTTTAGAAGTTGT+TGG - chr5.2:18024981-18025000 MS.gene001120:CDS 20.0%
! AATAATTACTTAATCGGGTT+TGG - chr5.2:18023868-18023887 MS.gene001120:intron 25.0%
! ATTTCAAATGACCATCAAAA+AGG + chr5.2:18023924-18023943 None:intergenic 25.0%
! GCAGAAATAATTACTTAATC+GGG - chr5.2:18023863-18023882 MS.gene001120:intron 25.0%
! TAATGATTCAACTCAATTCA+TGG - chr5.2:18024900-18024919 MS.gene001120:CDS 25.0%
! TGATAGAGTTAAAGCAATTA+AGG - chr5.2:18024147-18024166 MS.gene001120:intron 25.0%
! TTAAGACTAAAGACAAATGT+CGG + chr5.2:18024200-18024219 None:intergenic 25.0%
! TTGATAAGATTGGAAATCAA+GGG - chr5.2:18024069-18024088 MS.gene001120:intron 25.0%
! TTTATGTTAGATGGAAAACA+TGG - chr5.2:18023655-18023674 MS.gene001120:intron 25.0%
! TTTGATAAGATTGGAAATCA+AGG - chr5.2:18024068-18024087 MS.gene001120:intron 25.0%
!! AAGGTTTAAGTTTCAATCTT+GGG - chr5.2:18023245-18023264 MS.gene001120:intron 25.0%
!! ATGTTTGTGTATTTGTGTTT+TGG - chr5.2:18023528-18023547 MS.gene001120:intron 25.0%
!! TGTTTGTGTATTTGTGTTTT+GGG - chr5.2:18023529-18023548 MS.gene001120:intron 25.0%
!!! AGTTTTGATTTTTGTTTCAG+TGG - chr5.2:18022892-18022911 MS.gene001120:CDS 25.0%
!!! GTTTTGATTTTTGTTTCAGT+GGG - chr5.2:18022893-18022912 MS.gene001120:CDS 25.0%
!!! GTTTTTTTTTTTCCTTTTCC+TGG - chr5.2:18024617-18024636 MS.gene001120:intron 25.0%
!!! TGAATTGAGTTGAATCATTA+AGG + chr5.2:18024900-18024919 None:intergenic 25.0%
AAATTGCAAAAGACTACATG+TGG + chr5.2:18024956-18024975 None:intergenic 30.0%
AACACACTCAATAATAGGTT+TGG - chr5.2:18025058-18025077 MS.gene001120:CDS 30.0%
AACTGAACACACTCAATAAT+AGG - chr5.2:18025053-18025072 MS.gene001120:CDS 30.0%
AAGTTACATAACATGTGATG+TGG - chr5.2:18023691-18023710 MS.gene001120:intron 30.0%
AGTTGAATCATTAAGGCTTA+AGG + chr5.2:18024893-18024912 None:intergenic 30.0%
ATAAGGAAGATTAACGTTGT+TGG + chr5.2:18022843-18022862 None:intergenic 30.0%
ATTGAAACTTAAACCTTCAC+GGG + chr5.2:18023242-18023261 None:intergenic 30.0%
ATTGGAAATCAAGGGAATTA+TGG - chr5.2:18024077-18024096 MS.gene001120:intron 30.0%
CAAACACTATTTCAGAATCA+AGG - chr5.2:18025200-18025219 MS.gene001120:intron 30.0%
CACATTATTTATTCGATACC+TGG - chr5.2:18023999-18024018 MS.gene001120:intron 30.0%
GATAACATGTTGAAGGAATT+TGG - chr5.2:18024361-18024380 MS.gene001120:intron 30.0%
GATTGAAACTTAAACCTTCA+CGG + chr5.2:18023243-18023262 None:intergenic 30.0%
GGCATATGATTTGATAAGAT+TGG - chr5.2:18024059-18024078 MS.gene001120:intron 30.0%
TAACTCTTCACAAGAAATCA+TGG + chr5.2:18023590-18023609 None:intergenic 30.0%
TAAGGAAGATTAACGTTGTT+GGG + chr5.2:18022842-18022861 None:intergenic 30.0%
TAGTTCACTCACATCTAAAA+AGG + chr5.2:18024035-18024054 None:intergenic 30.0%
TCCAAGGAAATTGTCTTTAA+CGG - chr5.2:18025307-18025326 MS.gene001120:CDS 30.0%
! AATTGAAGACTTTTCCGAAT+AGG + chr5.2:18022795-18022814 None:intergenic 30.0%
! ACTTGATGATTATCCAGAAA+GGG - chr5.2:18024309-18024328 MS.gene001120:intron 30.0%
! GAAGGTTTAAGTTTCAATCT+TGG - chr5.2:18023244-18023263 MS.gene001120:intron 30.0%
! GTTTGTGTATTTGTGTTTTG+GGG - chr5.2:18023530-18023549 MS.gene001120:intron 30.0%
! TACTTGATGATTATCCAGAA+AGG - chr5.2:18024308-18024327 MS.gene001120:intron 30.0%
! TTTTGTATAACCCTCTTGTT+CGG - chr5.2:18023391-18023410 MS.gene001120:intron 30.0%
!! AAATCATGACTTGGTATTCT+GGG - chr5.2:18023940-18023959 MS.gene001120:intron 30.0%
!! AATGGATTGAACATTATAGC+AGG - chr5.2:18024747-18024766 MS.gene001120:intron 30.0%
!! TTTGTTTCAGTGGGTTATTA+TGG - chr5.2:18022902-18022921 MS.gene001120:CDS 30.0%
AAAAAAATTGACCCAGAACC+AGG - chr5.2:18022926-18022945 MS.gene001120:CDS 35.0%
ACACTTCCTTTGCATACAAA+TGG - chr5.2:18023214-18023233 MS.gene001120:intron 35.0%
AGATGACGACATCTAATTGA+TGG + chr5.2:18024441-18024460 None:intergenic 35.0%
AGTCAAACAAGAATGCAAGT+AGG + chr5.2:18024493-18024512 None:intergenic 35.0%
ATCAACATTGACATCTGGAT+TGG + chr5.2:18025452-18025471 None:intergenic 35.0%
ATCAAGGAATTGTTCTTCCA+TGG - chr5.2:18025216-18025235 MS.gene001120:intron 35.0%
ATCTTCAAGTATCTCAAAGC+TGG - chr5.2:18022741-18022760 MS.gene001120:CDS 35.0%
ATGAAATGAACATGCTGTAG+TGG - chr5.2:18024680-18024699 MS.gene001120:intron 35.0%
ATTGTGGGATAACATGTTGA+AGG - chr5.2:18024354-18024373 MS.gene001120:intron 35.0%
CAAAAAATGGAGATGTGCTA+GGG - chr5.2:18022970-18022989 MS.gene001120:CDS 35.0%
GAAGAACAGATGGCAAAAAA+TGG - chr5.2:18022957-18022976 MS.gene001120:CDS 35.0%
GAGTTAAAGCAATTAAGGAG+AGG - chr5.2:18024152-18024171 MS.gene001120:intron 35.0%
GTGTTCAGTTAACATCATGA+TGG + chr5.2:18025043-18025062 None:intergenic 35.0%
GTTATGACTTCACTTCAGAT+GGG - chr5.2:18025146-18025165 MS.gene001120:CDS 35.0%
TAAGGAATTTGTAGGATCTG+AGG - chr5.2:18024812-18024831 MS.gene001120:CDS 35.0%
TAATAGGTTTGGACTGAACT+CGG - chr5.2:18025069-18025088 MS.gene001120:CDS 35.0%
TAGATGTGAGTGAACTAAGA+GGG - chr5.2:18024038-18024057 MS.gene001120:intron 35.0%
TCAATGACAATGTCCATTGA+TGG + chr5.2:18024644-18024663 None:intergenic 35.0%
TGAAATGAACATGCTGTAGT+GGG - chr5.2:18024681-18024700 MS.gene001120:intron 35.0%
TGTCATTGATACTGTGTAGA+TGG - chr5.2:18024655-18024674 MS.gene001120:intron 35.0%
TTAGATGTGAGTGAACTAAG+AGG - chr5.2:18024037-18024056 MS.gene001120:intron 35.0%
TTTGTATAACCCTCTTGTTC+GGG - chr5.2:18023392-18023411 MS.gene001120:intron 35.0%
! GACTTTTCCGAATAGGTAAA+AGG + chr5.2:18022788-18022807 None:intergenic 35.0%
! GGATTGAATTGCCTTTTTGA+TGG - chr5.2:18023910-18023929 MS.gene001120:intron 35.0%
! GGTCATTTGAAATCATGACT+TGG - chr5.2:18023931-18023950 MS.gene001120:intron 35.0%
! TAAAGACAAATGTCGGTTAG+TGG + chr5.2:18024193-18024212 None:intergenic 35.0%
! TTATAGCAGGAGTTGTGTTT+TGG - chr5.2:18024760-18024779 MS.gene001120:intron 35.0%
! TTTTCCGAATAGGTAAAAGG+AGG + chr5.2:18022785-18022804 None:intergenic 35.0%
!! AGGGTTCTAAGAAACCTTAT+AGG - chr5.2:18023308-18023327 MS.gene001120:intron 35.0%
!! GAAATCATGACTTGGTATTC+TGG - chr5.2:18023939-18023958 MS.gene001120:intron 35.0%
!! TTGGTGTTAAAATCCTTGCT+TGG + chr5.2:18025433-18025452 None:intergenic 35.0%
!!! GGCATTGGTAAAAGATTTTG+TGG - chr5.2:18023889-18023908 MS.gene001120:intron 35.0%
AACCTCTTACAGAAGGATCT+AGG - chr5.2:18025106-18025125 MS.gene001120:CDS 40.0%
AACGACGTCGAATCATATGA+CGG + chr5.2:18023024-18023043 None:intergenic 40.0%
AATGGAACGCATTGTAGTCT+TGG - chr5.2:18024531-18024550 MS.gene001120:intron 40.0%
AGTACTACTTCACAGCAACT+TGG - chr5.2:18023124-18023143 MS.gene001120:intron 40.0%
ATCCTTATCATGTGTGTGTG+GGG - chr5.2:18023714-18023733 MS.gene001120:intron 40.0%
ATTCCACAGGCTTTCTTGAA+CGG + chr5.2:18023048-18023067 None:intergenic 40.0%
CAAACAAGAATGCAAGTAGG+AGG + chr5.2:18024490-18024509 None:intergenic 40.0%
CAACTCAATTCATGGCTACA+TGG - chr5.2:18024908-18024927 MS.gene001120:CDS 40.0%
CAAGCCTAACTCCAAAACTA+TGG + chr5.2:18023772-18023791 None:intergenic 40.0%
CTGGATAATCATCAAGTAGC+AGG + chr5.2:18024306-18024325 None:intergenic 40.0%
GAAGAAGAAGAAGATTCCAC+AGG + chr5.2:18023061-18023080 None:intergenic 40.0%
GAAGTTGTAGTTGTCAACCA+TGG + chr5.2:18025236-18025255 None:intergenic 40.0%
GACCTTAGTAATCCAGAGTT+CGG - chr5.2:18023421-18023440 MS.gene001120:intron 40.0%
GATCCTTATCATGTGTGTGT+GGG - chr5.2:18023713-18023732 MS.gene001120:intron 40.0%
GCAAAAAATGGAGATGTGCT+AGG - chr5.2:18022969-18022988 MS.gene001120:CDS 40.0%
GCCGTTAAAGACAATTTCCT+TGG + chr5.2:18025311-18025330 None:intergenic 40.0%
GGTTATGACTTCACTTCAGA+TGG - chr5.2:18025145-18025164 MS.gene001120:CDS 40.0%
GTGTTCAATGCGATCTAACA+AGG - chr5.2:18024568-18024587 MS.gene001120:intron 40.0%
GTTAGATGCTAGTTAGACGT+TGG + chr5.2:18024278-18024297 None:intergenic 40.0%
TAAAAAGGCGAACAATGACC+AGG + chr5.2:18024020-18024039 None:intergenic 40.0%
TACTTAATCGGGTTTGGCAT+TGG - chr5.2:18023874-18023893 MS.gene001120:intron 40.0%
TGATGATTATCCAGAAAGGG+TGG - chr5.2:18024312-18024331 MS.gene001120:intron 40.0%
TTCCTAGATCCTTCTGTAAG+AGG + chr5.2:18025111-18025130 None:intergenic 40.0%
TTGTATAACCCTCTTGTTCG+GGG - chr5.2:18023393-18023412 MS.gene001120:intron 40.0%
! AAGTCATCTGGCCATAGTTT+TGG - chr5.2:18023758-18023777 MS.gene001120:intron 40.0%
! CTAGGAACTGTGAAGTATCA+AGG - chr5.2:18025124-18025143 MS.gene001120:CDS 40.0%
! CTGACCTCCTTTTACCTATT+CGG - chr5.2:18022778-18022797 MS.gene001120:CDS 40.0%
! GGTTAGTTATGACCAAACTC+CGG + chr5.2:18024257-18024276 None:intergenic 40.0%
! GTAGGATCTGAGGTATGAAA+TGG - chr5.2:18024822-18024841 MS.gene001120:CDS 40.0%
!! ATAGCTTTGAGCTGGTATTG+TGG - chr5.2:18024338-18024357 MS.gene001120:intron 40.0%
!! ATGTTCTAGCTCTTGCCATT+GGG + chr5.2:18022712-18022731 None:intergenic 40.0%
!! TAGCTTTGAGCTGGTATTGT+GGG - chr5.2:18024339-18024358 MS.gene001120:intron 40.0%
!! TGTCTTTAGTCTTAACCCTC+CGG - chr5.2:18024205-18024224 MS.gene001120:intron 40.0%
AAATTGACCCAGAACCAGGT+AGG - chr5.2:18022930-18022949 MS.gene001120:CDS 45.0%
AAGCTATGAACCACCCTTTC+TGG + chr5.2:18024325-18024344 None:intergenic 45.0%
AATGGAGTATAGGCCAAGCA+AGG - chr5.2:18025417-18025436 MS.gene001120:CDS 45.0%
AATTCATGGCTACATGGCCT+CGG - chr5.2:18024914-18024933 MS.gene001120:CDS 45.0%
ACTTCACTTCAGATGGGATG+TGG - chr5.2:18025152-18025171 MS.gene001120:CDS 45.0%
AGAGTAAGGTGCAAGTCATC+TGG - chr5.2:18023746-18023765 MS.gene001120:intron 45.0%
AGATTTAGCCTCCTCTGCAA+TGG - chr5.2:18025399-18025418 MS.gene001120:CDS 45.0%
ATAGGTAAAAGGAGGTCAGG+AGG + chr5.2:18022777-18022796 None:intergenic 45.0%
ATTGTCTTTAACGGCCAGCT+AGG - chr5.2:18025316-18025335 MS.gene001120:CDS 45.0%
CATACAAATGGTACCCGTGA+AGG - chr5.2:18023226-18023245 MS.gene001120:intron 45.0%
CATTTCCTCAAAACCCCACA+AGG + chr5.2:18023563-18023582 None:intergenic 45.0%
CCTATGCTTCTTCCTCTTCA+GGG - chr5.2:18023289-18023308 MS.gene001120:intron 45.0%
CCTGTTTCAAACTACCTAGC+TGG + chr5.2:18025333-18025352 None:intergenic 45.0%
CGAATAGGTAAAAGGAGGTC+AGG + chr5.2:18022780-18022799 None:intergenic 45.0%
CGGGTACCATTTGTATGCAA+AGG + chr5.2:18023223-18023242 None:intergenic 45.0%
CGGTCACAGTACTTAGAATC+AGG + chr5.2:18023004-18023023 None:intergenic 45.0%
GGAGAACAACCTCTTACAGA+AGG - chr5.2:18025099-18025118 MS.gene001120:CDS 45.0%
GGATCCTTATCATGTGTGTG+TGG - chr5.2:18023712-18023731 MS.gene001120:intron 45.0%
GGTAGGTGTAGAAGAACAGA+TGG - chr5.2:18022947-18022966 MS.gene001120:CDS 45.0%
GGTTTCTTAGAACCCTGAAG+AGG + chr5.2:18023304-18023323 None:intergenic 45.0%
GTTGTTGGGTACTTACGAGA+TGG + chr5.2:18022828-18022847 None:intergenic 45.0%
TCTGTTCTTCTACACCTACC+TGG + chr5.2:18022947-18022966 None:intergenic 45.0%
TGGGGTGAGATTTGAGAGTA+AGG - chr5.2:18023732-18023751 MS.gene001120:intron 45.0%
TGTATAACCCTCTTGTTCGG+GGG - chr5.2:18023394-18023413 MS.gene001120:intron 45.0%
TTACCGTTCAAGAAAGCCTG+TGG - chr5.2:18023042-18023061 MS.gene001120:intron 45.0%
TTAGTAATCCAGAGTTCGGC+CGG - chr5.2:18023425-18023444 MS.gene001120:intron 45.0%
! AAGAAGCATAGGGTCCATGT+GGG + chr5.2:18023281-18023300 None:intergenic 45.0%
! ACAATGTCCATTGATGGACC+AGG + chr5.2:18024638-18024657 None:intergenic 45.0%
! CCAGCTAGGTAGTTTGAAAC+AGG - chr5.2:18025330-18025349 MS.gene001120:CDS 45.0%
! CCTGAAGAGGAAGAAGCATA+GGG + chr5.2:18023291-18023310 None:intergenic 45.0%
! GATCCTGATGTTTAAGACCG+AGG + chr5.2:18024934-18024953 None:intergenic 45.0%
! TCCATTGATGGACCAGGAAA+AGG + chr5.2:18024632-18024651 None:intergenic 45.0%
! TCCTTTTCCTGGTCCATCAA+TGG - chr5.2:18024628-18024647 MS.gene001120:intron 45.0%
! TTCTACACCTACCTGGTTCT+GGG + chr5.2:18022940-18022959 None:intergenic 45.0%
! TTTTGCCTTGTGGGGTTTTG+AGG - chr5.2:18023555-18023574 MS.gene001120:intron 45.0%
!! GATGTTCTAGCTCTTGCCAT+TGG + chr5.2:18022713-18022732 None:intergenic 45.0%
!! GTTCTCTTGTTGTTCGCTGT+TGG + chr5.2:18025258-18025277 None:intergenic 45.0%
!! TGAGTTGGTGACCACATCAA+CGG + chr5.2:18022672-18022691 None:intergenic 45.0%
!! TTTGGGGTGTTTTGCCTTGT+GGG - chr5.2:18023546-18023565 MS.gene001120:intron 45.0%
!!! CTGGCCATAGTTTTGGAGTT+AGG - chr5.2:18023765-18023784 MS.gene001120:intron 45.0%
!!! TTTTGGGGTGTTTTGCCTTG+TGG - chr5.2:18023545-18023564 MS.gene001120:intron 45.0%
ACTACCAGAGCCTCTTCTCT+TGG + chr5.2:18024234-18024253 None:intergenic 50.0%
ACTGTGAACGGTGGATGAGT+TGG + chr5.2:18022687-18022706 None:intergenic 50.0%
CACCCCACACACACATGATA+AGG + chr5.2:18023719-18023738 None:intergenic 50.0%
CCCTATGCTTCTTCCTCTTC+AGG - chr5.2:18023288-18023307 MS.gene001120:intron 50.0%
CCTATACTCCATTGCAGAGG+AGG + chr5.2:18025410-18025429 None:intergenic 50.0%
CCTCCTCTGCAATGGAGTAT+AGG - chr5.2:18025407-18025426 MS.gene001120:CDS 50.0%
CTACCAGAGCCTCTTCTCTT+GGG + chr5.2:18024233-18024252 None:intergenic 50.0%
CTCAGTCTCTCTTCAGTGAC+TGG - chr5.2:18025365-18025384 MS.gene001120:CDS 50.0%
CTTCTACACCTACCTGGTTC+TGG + chr5.2:18022941-18022960 None:intergenic 50.0%
GCCAGACTTTACTTACCTCC+CGG + chr5.2:18023447-18023466 None:intergenic 50.0%
GGCCGAACTCTGGATTACTA+AGG + chr5.2:18023426-18023445 None:intergenic 50.0%
GTATAACCCTCTTGTTCGGG+GGG - chr5.2:18023395-18023414 MS.gene001120:intron 50.0%
GTCACTGAAGAGAGACTGAG+AGG + chr5.2:18025365-18025384 None:intergenic 50.0%
TAGTAATCCAGAGTTCGGCC+GGG - chr5.2:18023426-18023445 MS.gene001120:intron 50.0%
TGCCATTGGGAGACTGTGAA+CGG + chr5.2:18022699-18022718 None:intergenic 50.0%
TGGCCTATACTCCATTGCAG+AGG + chr5.2:18025413-18025432 None:intergenic 50.0%
TGGCCTCGGTCTTAAACATC+AGG - chr5.2:18024928-18024947 MS.gene001120:CDS 50.0%
TTCAACAACCGCCGTTGATG+TGG - chr5.2:18022658-18022677 MS.gene001120:CDS 50.0%
! AGAAGCATAGGGTCCATGTG+GGG + chr5.2:18023280-18023299 None:intergenic 50.0%
! CCCTGAAGAGGAAGAAGCAT+AGG + chr5.2:18023292-18023311 None:intergenic 50.0%
! GAAGAAGCATAGGGTCCATG+TGG + chr5.2:18023282-18023301 None:intergenic 50.0%
!! ACTTCACAGCAACTTGGTGC+TGG - chr5.2:18023130-18023149 MS.gene001120:intron 50.0%
!! GGTGGTTCATAGCTTTGAGC+TGG - chr5.2:18024330-18024349 MS.gene001120:intron 50.0%
!! TTGGGGTGTTTTGCCTTGTG+GGG - chr5.2:18023547-18023566 MS.gene001120:intron 50.0%
CACCGTTCACAGTCTCCCAA+TGG - chr5.2:18022694-18022713 MS.gene001120:CDS 55.0%
CATTGGGAGACTGTGAACGG+TGG + chr5.2:18022696-18022715 None:intergenic 55.0%
CTCTCTTCAGTGACTGGCAG+TGG - chr5.2:18025371-18025390 MS.gene001120:CDS 55.0%
CTCTTCTCTTGGGAACCGGA+GGG + chr5.2:18024223-18024242 None:intergenic 55.0%
GAGCCTCTTCTCTTGGGAAC+CGG + chr5.2:18024227-18024246 None:intergenic 55.0%
GCCGGGAGGTAAGTAAAGTC+TGG - chr5.2:18023443-18023462 MS.gene001120:intron 55.0%
GTTCCCAAGAGAAGAGGCTC+TGG - chr5.2:18024227-18024246 MS.gene001120:intron 55.0%
TGGACTGAACTCGGAAGCAG+AGG - chr5.2:18025078-18025097 MS.gene001120:CDS 55.0%
! GAGAAGAGGCTCTGGTAGTC+CGG - chr5.2:18024235-18024254 MS.gene001120:intron 55.0%
!! CTTGGTGCTGGTGGTTCTAG+TGG - chr5.2:18023142-18023161 MS.gene001120:intron 55.0%
!! GTTGGTGACCACATCAACGG+CGG + chr5.2:18022669-18022688 None:intergenic 55.0%
!! TCACAGCAACTTGGTGCTGG+TGG - chr5.2:18023133-18023152 MS.gene001120:intron 55.0%
AACCCTCTTGTTCGGGGGGA+GGG - chr5.2:18023399-18023418 MS.gene001120:intron 60.0%
CATAGGGTCCATGTGGGGCA+TGG + chr5.2:18023275-18023294 None:intergenic 60.0%
CCTCCGGTTCCCAAGAGAAG+AGG - chr5.2:18024221-18024240 MS.gene001120:intron 60.0%
CCTCGACGCTGCAAGATCCA+AGG - chr5.2:18025291-18025310 MS.gene001120:intron 60.0%
CCTCTTCTCTTGGGAACCGG+AGG + chr5.2:18024224-18024243 None:intergenic 60.0%
CCTTGGATCTTGCAGCGTCG+AGG + chr5.2:18025294-18025313 None:intergenic 60.0%
GCGTCGAGGTTAAGCAGCTC+AGG + chr5.2:18025280-18025299 None:intergenic 60.0%
TAACCCTCTTGTTCGGGGGG+AGG - chr5.2:18023398-18023417 MS.gene001120:intron 60.0%
TAATCCAGAGTTCGGCCGGG+AGG - chr5.2:18023429-18023448 MS.gene001120:intron 60.0%
TGGGAACACCATGCCCCACA+TGG - chr5.2:18023264-18023283 MS.gene001120:intron 60.0%
! GGCTCTGGTAGTCCGGAGTT+TGG - chr5.2:18024242-18024261 MS.gene001120:intron 60.0%
CTTACCTCCCGGCCGAACTC+TGG + chr5.2:18023436-18023455 None:intergenic 65.0%
GTCCCTCCCCCCGAACAAGA+GGG + chr5.2:18023404-18023423 None:intergenic 65.0%
GGTCCCTCCCCCCGAACAAG+AGG + chr5.2:18023405-18023424 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 18022651 18025474 18022651 ID=MS.gene001120
chr5.2 mRNA 18022651 18025474 18022651 ID=MS.gene001120.t1;Parent=MS.gene001120
chr5.2 exon 18025294 18025474 18025294 ID=MS.gene001120.t1.exon1;Parent=MS.gene001120.t1
chr5.2 CDS 18025294 18025474 18025294 ID=cds.MS.gene001120.t1;Parent=MS.gene001120.t1
chr5.2 exon 18024796 18025213 18024796 ID=MS.gene001120.t1.exon2;Parent=MS.gene001120.t1
chr5.2 CDS 18024796 18025213 18024796 ID=cds.MS.gene001120.t1;Parent=MS.gene001120.t1
chr5.2 exon 18022651 18023050 18022651 ID=MS.gene001120.t1.exon3;Parent=MS.gene001120.t1
chr5.2 CDS 18022651 18023050 18022651 ID=cds.MS.gene001120.t1;Parent=MS.gene001120.t1
Gene Sequence

>MS.gene001120

ATGAGCATTCAACAACCGCCGTTGATGTGGTCACCAACTCATCCACCGTTCACAGTCTCCCAATGGCAAGAGCTAGAACATCAAGCTCTCATCTTCAAGTATCTCAAAGCTGGTTTATCTGTTCCTCCTGACCTCCTTTTACCTATTCGGAAAAGTCTTCAATTCATGTCTCATCCATCTCGTAAGTACCCAACAACGTTAATCTTCCTTATTTTGTCTCTATTTTGATTTACAACTATAAAGTTTTGATTTTTGTTTCAGTGGGTTATTATGGAAAAAAAATTGACCCAGAACCAGGTAGGTGTAGAAGAACAGATGGCAAAAAATGGAGATGTGCTAGGGATGCACATCCTGATTCTAAGTACTGTGACCGTCATATGATTCGACGTCGTTACCGTTCAAGAAAGCCTGTGGAATCTTCTTCTTCTTCTTCTTGTTCACAATCTTCATCTTCAGTTTCAGTTTCTACTACTAGTACTACTTCACAGCAACTTGGTGCTGGTGGTTCTAGTGGAAGTACTAGTACTGTTTCTGCTTCTGTTACTGCTACTTCAACTTTTCATACACTTCCTTTGCATACAAATGGTACCCGTGAAGGTTTAAGTTTCAATCTTGGGAACACCATGCCCCACATGGACCCTATGCTTCTTCCTCTTCAGGGTTCTAAGAAACCTTATAGGTATGTTTCTTTTTTTGATTCATTTTGTTTCTTTTGTTTTCAATAAGGCAACACTTTCTTCTTTTGTATAACCCTCTTGTTCGGGGGGAGGGACCTTAGTAATCCAGAGTTCGGCCGGGAGGTAAGTAAAGTCTGGCAAAAAATTGTTTCACTTAGAATTTGCTGTTTTTTTTGTTGTTGTTTATTTGTGTGTGTTCAATGTTTGTGTATTTGTGTTTTGGGGTGTTTTGCCTTGTGGGGTTTTGAGGAAATGATTGCCATGATTTCTTGTGAAGAGTTATTATTGTTGTTCTTTCCTTTTTGTTTACACAATTGATTTTATATCTTTATGTTAGATGGAAAACATGGTAGTTGTGATGTTAAGTTACATAACATGTGATGTGGATCCTTATCATGTGTGTGTGGGGTGAGATTTGAGAGTAAGGTGCAAGTCATCTGGCCATAGTTTTGGAGTTAGGCTTGTACTTTATATTGTTTTGACAAAGGCTTATACTTTATTTTATTCAACTTGGTTTGTGTGAATATGAAAGAATGCAGAAATAATTACTTAATCGGGTTTGGCATTGGTAAAAGATTTTGTGGATTGAATTGCCTTTTTGATGGTCATTTGAAATCATGACTTGGTATTCTGGGTTTTTACTTGTTCAAATATTTTGTTGAAATCCTTTTCACATTATTTATTCGATACCTGGTCATTGTTCGCCTTTTTAGATGTGAGTGAACTAAGAGGGCATATGATTTGATAAGATTGGAAATCAAGGGAATTATGGATGATTGTATAACTGAAACAATAACAAGAGAACTGATTTTTTGTGTGTGATAGAGTTAAAGCAATTAAGGAGAGGTAATTTCATTGTAGTCCACTAACCGACATTTGTCTTTAGTCTTAACCCTCCGGTTCCCAAGAGAAGAGGCTCTGGTAGTCCGGAGTTTGGTCATAACTAACCAACGTCTAACTAGCATCTAACTGCTGCCTGCTACTTGATGATTATCCAGAAAGGGTGGTTCATAGCTTTGAGCTGGTATTGTGGGATAACATGTTGAAGGAATTTGGAAATGTGCCATTTCATTTTATATCTATTTGGTGATATGATTTTTTAATTCTAGGCCATCAATTAGATGTCGTCATCTAATTGTTATTTGATGTCTTTCTTCTTCCTCCTACTTGCATTCTTGTTTGACTGTTTATTCTTTACTTTTAAATGGAACGCATTGTAGTCTTGGCTACAACTACATAAGTGTTCAATGCGATCTAACAAGGCTACACACTGTAGTCTTGTGATAGTTGTTTTTTTTTTTCCTTTTCCTGGTCCATCAATGGACATTGTCATTGATACTGTGTAGATGGCTATGAAATGAACATGCTGTAGTGGGAAATTTTGTTTTTTTTTTTAAATTTAAAAAAGAAAAAAAGAGAAATGGATTGAACATTATAGCAGGAGTTGTGTTTTGGTAATTTGAAATAAATGATTTTACTTTTTATAAGGAATTTGTAGGATCTGAGGTATGAAATGGATATTAATATTTTTATGAAGGTGGATTACTGAAGCATCTAAACTGCCTTAAGCCTTAATGATTCAACTCAATTCATGGCTACATGGCCTCGGTCTTAAACATCAGGATCCACATGTAGTCTTTTGCAATTTTTTTCTTAAGTATTTTAGAAGTTGTTGGTAATTTTCTATCATGCACACAAGTGAAATAAACGTACCATCATGATGTTAACTGAACACACTCAATAATAGGTTTGGACTGAACTCGGAAGCAGAGGAGAACAACCTCTTACAGAAGGATCTAGGAACTGTGAAGTATCAAGGTTATGACTTCACTTCAGATGGGATGTGGTATAATAACATGTCTCAGATTTCATCAAACACTATTTCAGAATCAAGGAATTGTTCTTCCATGGTTGACAACTACAACTTCCAACAGCGAACAACAAGAGAACCTGAGCTGCTTAACCTCGACGCTGCAAGATCCAAGGAAATTGTCTTTAACGGCCAGCTAGGTAGTTTGAAACAGGAATATCAATCCTCTCAGTCTCTCTTCAGTGACTGGCAGTGGAAGAAAGATTTAGCCTCCTCTGCAATGGAGTATAGGCCAAGCAAGGATTTTAACACCAATCCAGATGTCAATGTTGATTGA
Protein sequence

>MS.gene001120.t1

MSIQQPPLMWSPTHPPFTVSQWQELEHQALIFKYLKAGLSVPPDLLLPIRKSLQFMSHPSLGYYGKKIDPEPGRCRRTDGKKWRCARDAHPDSKYCDRHMIRRRYRSRKPVESSSSSSCSQSSSSVSVSTTSTTSQQLGAGGSSGSTSTVSASVTATSTFHTLPLHTNGTREGLSFNLGNTMPHMDPMLLPLQGSKKPYRFGLNSEAEENNLLQKDLGTVKYQGYDFTSDGMWYNNMSQISSNTISESRNCSSMVDNYNFQQRTTREPELLNLDAARSKEIVFNGQLGSLKQEYQSSQSLFSDWQWKKDLASSAMEYRPSKDFNTNPDVNVD