Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001217.t1 | XP_003631014.2 | 66.7 | 225 | 22 | 3 | 22 | 194 | 760 | 983 | 6.00E-70 | 274.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001217.t1 | Q9C5U0 | 51.5 | 204 | 50 | 3 | 33 | 194 | 864 | 1060 | 1.1e-45 | 185.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001217.t1 | G7LCC4 | 66.7 | 225 | 22 | 3 | 22 | 194 | 517 | 740 | 4.3e-70 | 274.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene001217.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001217.t1 | MTR_8g106150 | 66.667 | 225 | 22 | 3 | 22 | 194 | 517 | 740 | 6.27e-91 | 287 |
| MS.gene001217.t1 | MTR_8g106150 | 66.667 | 225 | 22 | 3 | 22 | 194 | 760 | 983 | 1.57e-89 | 288 |
| MS.gene001217.t1 | MTR_8g106150 | 71.324 | 136 | 11 | 2 | 213 | 320 | 116 | 251 | 1.96e-50 | 180 |
| MS.gene001217.t1 | MTR_8g080770 | 64.815 | 108 | 31 | 1 | 86 | 193 | 855 | 955 | 7.56e-39 | 147 |
| MS.gene001217.t1 | MTR_8g080770 | 42.945 | 163 | 48 | 4 | 213 | 330 | 111 | 273 | 1.30e-24 | 105 |
| MS.gene001217.t1 | MTR_8g080770 | 64.815 | 108 | 31 | 1 | 86 | 193 | 746 | 846 | 9.09e-39 | 146 |
| MS.gene001217.t1 | MTR_8g080770 | 42.683 | 164 | 49 | 4 | 212 | 330 | 1 | 164 | 1.19e-24 | 105 |
| MS.gene001217.t1 | MTR_5g097410 | 42.000 | 200 | 73 | 2 | 38 | 194 | 1002 | 1201 | 1.21e-37 | 143 |
| MS.gene001217.t1 | MTR_5g097410 | 43.949 | 157 | 45 | 3 | 206 | 320 | 332 | 487 | 8.34e-27 | 111 |
| MS.gene001217.t1 | MTR_3g085130 | 42.408 | 191 | 61 | 2 | 44 | 193 | 627 | 809 | 4.72e-37 | 141 |
| MS.gene001217.t1 | MTR_3g085130 | 52.113 | 71 | 32 | 2 | 262 | 330 | 48 | 118 | 1.70e-11 | 65.9 |
| MS.gene001217.t1 | MTR_3g085130 | 42.408 | 191 | 61 | 2 | 44 | 193 | 837 | 1019 | 1.28e-36 | 140 |
| MS.gene001217.t1 | MTR_3g085130 | 44.172 | 163 | 46 | 4 | 213 | 330 | 166 | 328 | 7.22e-26 | 108 |
| MS.gene001217.t1 | MTR_5g044100 | 47.134 | 157 | 62 | 4 | 3 | 143 | 72 | 223 | 9.24e-34 | 124 |
| MS.gene001217.t1 | MTR_2g067240 | 73.134 | 67 | 17 | 1 | 262 | 327 | 3 | 69 | 3.41e-25 | 102 |
| MS.gene001217.t1 | MTR_3g105590 | 27.746 | 173 | 104 | 4 | 34 | 191 | 768 | 934 | 2.55e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001217.t1 | AT2G01830 | 51.471 | 204 | 50 | 3 | 33 | 194 | 853 | 1049 | 3.40e-55 | 194 |
| MS.gene001217.t1 | AT2G01830 | 59.854 | 137 | 26 | 2 | 213 | 320 | 193 | 329 | 1.52e-39 | 149 |
| MS.gene001217.t1 | AT2G01830 | 51.471 | 204 | 50 | 3 | 33 | 194 | 841 | 1037 | 3.43e-55 | 194 |
| MS.gene001217.t1 | AT2G01830 | 59.854 | 137 | 26 | 2 | 213 | 320 | 181 | 317 | 1.69e-39 | 149 |
| MS.gene001217.t1 | AT2G01830 | 51.471 | 204 | 50 | 3 | 33 | 194 | 841 | 1037 | 3.43e-55 | 194 |
| MS.gene001217.t1 | AT2G01830 | 59.854 | 137 | 26 | 2 | 213 | 320 | 181 | 317 | 1.69e-39 | 149 |
| MS.gene001217.t1 | AT2G01830 | 51.471 | 204 | 50 | 3 | 33 | 194 | 841 | 1037 | 3.43e-55 | 194 |
| MS.gene001217.t1 | AT2G01830 | 59.854 | 137 | 26 | 2 | 213 | 320 | 181 | 317 | 1.69e-39 | 149 |
| MS.gene001217.t1 | AT2G01830 | 51.471 | 204 | 50 | 3 | 33 | 194 | 841 | 1037 | 3.43e-55 | 194 |
| MS.gene001217.t1 | AT2G01830 | 59.854 | 137 | 26 | 2 | 213 | 320 | 181 | 317 | 1.69e-39 | 149 |
| MS.gene001217.t1 | AT2G01830 | 51.471 | 204 | 50 | 3 | 33 | 194 | 864 | 1060 | 3.81e-55 | 194 |
| MS.gene001217.t1 | AT2G01830 | 59.854 | 137 | 26 | 2 | 213 | 320 | 204 | 340 | 1.80e-39 | 149 |
| MS.gene001217.t1 | AT5G35750 | 45.226 | 199 | 66 | 3 | 42 | 197 | 967 | 1165 | 6.68e-44 | 161 |
| MS.gene001217.t1 | AT5G35750 | 45.333 | 150 | 40 | 2 | 213 | 320 | 308 | 457 | 8.56e-28 | 114 |
| MS.gene001217.t1 | AT1G27320 | 43.627 | 204 | 69 | 3 | 36 | 193 | 813 | 1016 | 1.46e-42 | 157 |
| MS.gene001217.t1 | AT1G27320 | 39.877 | 163 | 53 | 3 | 213 | 330 | 169 | 331 | 3.44e-23 | 101 |
Find 0 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTTTTTTTTTTTTTT+TGG | - | 43344:19864-19883 | MS.gene001217:intron | 0.0% |
| !! | ATGATTTATAAAAAACAATA+TGG | + | 43344:20188-20207 | None:intergenic | 10.0% |
| !! | ATTAAATGAGTTAAAATATT+TGG | - | 43344:19323-19342 | MS.gene001217:CDS | 10.0% |
| !! | TGATTTATAAAAAACAATAT+GGG | + | 43344:20187-20206 | None:intergenic | 10.0% |
| !!! | TTTTTAGTGAATTAAAGTTA+AGG | - | 43344:19140-19159 | MS.gene001217:intron | 15.0% |
| !! | CAATGTCATTAATTACAAAA+AGG | + | 43344:19117-19136 | None:intergenic | 20.0% |
| !! | GTGTTTAGTATAAAAATCTT+GGG | - | 43344:21511-21530 | MS.gene001217:intron | 20.0% |
| !! | TCTCAACAAAAATAATATCA+GGG | + | 43344:19367-19386 | None:intergenic | 20.0% |
| !! | TGTGTTTAGTATAAAAATCT+TGG | - | 43344:21510-21529 | MS.gene001217:intron | 20.0% |
| !! | TTCTCAACAAAAATAATATC+AGG | + | 43344:19368-19387 | None:intergenic | 20.0% |
| !!! | ACTGTTAATTGAGTATTTTT+TGG | - | 43344:20774-20793 | MS.gene001217:intron | 20.0% |
| !!! | ATAAAAGTATCTGAGATTTT+AGG | - | 43344:20695-20714 | MS.gene001217:intron | 20.0% |
| !!! | CTGTTAATTGAGTATTTTTT+GGG | - | 43344:20775-20794 | MS.gene001217:intron | 20.0% |
| !!! | TTTCTGTGTAATTTTTGAAA+TGG | - | 43344:20568-20587 | MS.gene001217:intron | 20.0% |
| ! | AACAAACATAACATGTATAG+AGG | + | 43344:20139-20158 | None:intergenic | 25.0% |
| ! | AATAAAGAGAAAAGTGACAA+AGG | + | 43344:20533-20552 | None:intergenic | 25.0% |
| ! | ACAAACATAACATGTATAGA+GGG | + | 43344:20138-20157 | None:intergenic | 25.0% |
| ! | TAAATTCCGTTTACCTATAT+TGG | - | 43344:20308-20327 | MS.gene001217:CDS | 25.0% |
| ! | TATCATTGAATTTATCAGCA+AGG | + | 43344:19972-19991 | None:intergenic | 25.0% |
| ! | TGAGTTAAAATATTTGGTTG+TGG | - | 43344:19329-19348 | MS.gene001217:CDS | 25.0% |
| ! | TGTTTCATATGAGTAATTAG+AGG | - | 43344:21479-21498 | MS.gene001217:intron | 25.0% |
| !! | AGAAACTTTTGCAGAATATA+CGG | - | 43344:20933-20952 | MS.gene001217:intron | 25.0% |
| !! | CATGTACTTACATTATTTTC+AGG | - | 43344:20205-20224 | MS.gene001217:CDS | 25.0% |
| !! | TGTATTAGTTAGTATTGAAC+TGG | - | 43344:20480-20499 | MS.gene001217:intron | 25.0% |
| !! | TTTTGTTGAGAAAGATTCAT+GGG | - | 43344:19376-19395 | MS.gene001217:intron | 25.0% |
| !! | TTTTTGTTGAGAAAGATTCA+TGG | - | 43344:19375-19394 | MS.gene001217:intron | 25.0% |
| !!! | AGTTTTTTCTAAATCAGCAA+AGG | + | 43344:19916-19935 | None:intergenic | 25.0% |
| !!! | GCACGAACTTTTTTATATAT+AGG | + | 43344:20754-20773 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTATGAGCATATA+TGG | - | 43344:20448-20467 | MS.gene001217:intron | 25.0% |
| AATAAAAACAAGCAGAGGAA+TGG | + | 43344:21190-21209 | None:intergenic | 30.0% | |
| AGCTGAAACATAGTGAAATA+AGG | + | 43344:21433-21452 | None:intergenic | 30.0% | |
| ATTCAAATGCAAGAAATGGA+CGG | - | 43344:19820-19839 | MS.gene001217:intron | 30.0% | |
| CAACAAAAATAATATCAGGG+TGG | + | 43344:19364-19383 | None:intergenic | 30.0% | |
| GAAAGAGATTTAGTGTTAGT+TGG | - | 43344:20841-20860 | MS.gene001217:CDS | 30.0% | |
| GGATATTCAAATGCAAGAAA+TGG | - | 43344:19816-19835 | MS.gene001217:intron | 30.0% | |
| TACTAATATTCGTAGCAAGA+AGG | + | 43344:19479-19498 | None:intergenic | 30.0% | |
| TAGAGTGGTTATAAAGACAA+TGG | - | 43344:21047-21066 | MS.gene001217:intron | 30.0% | |
| TATAAAGACAATGGAAAGAG+AGG | - | 43344:21056-21075 | MS.gene001217:intron | 30.0% | |
| TATGAGTAATTAGAGGATGA+AGG | - | 43344:21486-21505 | MS.gene001217:intron | 30.0% | |
| TATGCTCATACAAAACAACT+AGG | + | 43344:20446-20465 | None:intergenic | 30.0% | |
| TGAACTCTTCTTCATATCTA+TGG | + | 43344:20805-20824 | None:intergenic | 30.0% | |
| TTAAAATATTTGGTTGTGGC+AGG | - | 43344:19333-19352 | MS.gene001217:CDS | 30.0% | |
| TTACGTGCATTCAATTTATG+TGG | + | 43344:19996-20015 | None:intergenic | 30.0% | |
| ! | ATTAGTTAGTATTGAACTGG+TGG | - | 43344:20483-20502 | MS.gene001217:intron | 30.0% |
| ! | TTATGTCTCAAAACCTTTTG+AGG | - | 43344:20392-20411 | MS.gene001217:intron | 30.0% |
| !! | ATGAAGAGTGTTTGAAATGT+GGG | - | 43344:20361-20380 | MS.gene001217:CDS | 30.0% |
| !! | ATTTCTCATTTTTGCAATGC+AGG | - | 43344:21235-21254 | MS.gene001217:CDS | 30.0% |
| !! | ATTTTAGTGGTTGATGTCAA+TGG | - | 43344:19681-19700 | MS.gene001217:CDS | 30.0% |
| !! | TATGAAGAGTGTTTGAAATG+TGG | - | 43344:20360-20379 | MS.gene001217:CDS | 30.0% |
| !!! | TAGTCTAAGATGTTTTGGTT+TGG | - | 43344:20594-20613 | MS.gene001217:intron | 30.0% |
| AACACTCTTCATATGTAGCA+TGG | + | 43344:20353-20372 | None:intergenic | 35.0% | |
| ACATCGTATCAATAGACTCA+AGG | + | 43344:21138-21157 | None:intergenic | 35.0% | |
| ATTAAAAACTTACCCTGTGC+TGG | + | 43344:19091-19110 | None:intergenic | 35.0% | |
| CACTGTATCACTAAAACATG+CGG | + | 43344:19526-19545 | None:intergenic | 35.0% | |
| CCACAAATAAAAACAAGCAG+AGG | + | 43344:21195-21214 | None:intergenic | 35.0% | |
| GAAGAAGAGTTCAGAGAAAT+AGG | - | 43344:20812-20831 | MS.gene001217:CDS | 35.0% | |
| GGGAGCTTAAATTTGTAAAC+AGG | + | 43344:21362-21381 | None:intergenic | 35.0% | |
| GTTAACAACTCTTTGTGCAT+AGG | + | 43344:20998-21017 | None:intergenic | 35.0% | |
| TAATGAGCTCTTCTGTTGTT+GGG | + | 43344:21391-21410 | None:intergenic | 35.0% | |
| TCATGGCCAATATAGGTAAA+CGG | + | 43344:20317-20336 | None:intergenic | 35.0% | |
| TGAACAATTCCTTCCTCAAA+AGG | + | 43344:20408-20427 | None:intergenic | 35.0% | |
| TGCACAAAGAGTTGTTAACT+CGG | - | 43344:20999-21018 | MS.gene001217:intron | 35.0% | |
| TGCTGTAATGTTACTGTACT+TGG | - | 43344:20636-20655 | MS.gene001217:intron | 35.0% | |
| TTAATGAGCTCTTCTGTTGT+TGG | + | 43344:21392-21411 | None:intergenic | 35.0% | |
| TTCAAATGCAAGAAATGGAC+GGG | - | 43344:19821-19840 | MS.gene001217:intron | 35.0% | |
| ! | AAATTTTCATTCCGCACAGA+AGG | + | 43344:19665-19684 | None:intergenic | 35.0% |
| ! | CATCTAAAGTCACACATGAT+CGG | - | 43344:19185-19204 | MS.gene001217:intron | 35.0% |
| ! | GTGCGGAATGAAAATTTTAG+TGG | - | 43344:19668-19687 | MS.gene001217:CDS | 35.0% |
| ! | TCTCAGATACTTTTATCTGC+TGG | + | 43344:20691-20710 | None:intergenic | 35.0% |
| ! | TTGCATTTGTTCTTGTTGTG+TGG | - | 43344:19284-19303 | MS.gene001217:CDS | 35.0% |
| !! | AGTGTTAGTTGGTGTTGTAA+TGG | - | 43344:20852-20871 | MS.gene001217:CDS | 35.0% |
| !! | CTTGTAACTTTGAAGCCAAA+GGG | + | 43344:20915-20934 | None:intergenic | 35.0% |
| !! | GGTCTTAGTCTAAGATGTTT+TGG | - | 43344:20589-20608 | MS.gene001217:intron | 35.0% |
| !! | GTGTTAGTTGGTGTTGTAAT+GGG | - | 43344:20853-20872 | MS.gene001217:CDS | 35.0% |
| !! | TCTTGTAACTTTGAAGCCAA+AGG | + | 43344:20916-20935 | None:intergenic | 35.0% |
| !! | TTTTGAGGAAGGAATTGTTC+AGG | - | 43344:20407-20426 | MS.gene001217:intron | 35.0% |
| !!! | CCTCTGCTTGTTTTTATTTG+TGG | - | 43344:21192-21211 | MS.gene001217:CDS | 35.0% |
| !!! | CTGCTTGTTTTTATTTGTGG+AGG | - | 43344:21195-21214 | MS.gene001217:CDS | 35.0% |
| AAGCAAGCATCAAACTTGTG+AGG | + | 43344:19793-19812 | None:intergenic | 40.0% | |
| AGCAAGCATCAAACTTGTGA+GGG | + | 43344:19792-19811 | None:intergenic | 40.0% | |
| AGCTCATTAAAGTGACTGCA+GGG | - | 43344:21402-21421 | MS.gene001217:intron | 40.0% | |
| CAAACTGAAGTTGAACCATC+AGG | + | 43344:19639-19658 | None:intergenic | 40.0% | |
| CAAGTTTGATGCTTGCTTCA+AGG | - | 43344:19795-19814 | MS.gene001217:intron | 40.0% | |
| CGAATGGTGAATGTAGTGAA+AGG | - | 43344:20280-20299 | MS.gene001217:CDS | 40.0% | |
| CGATCATGTGTGACTTTAGA+TGG | + | 43344:19187-19206 | None:intergenic | 40.0% | |
| GAGAAAGATTCATGGGTTTG+TGG | - | 43344:19383-19402 | MS.gene001217:intron | 40.0% | |
| GAGAACCCAACAACCTAAAA+GGG | + | 43344:21313-21332 | None:intergenic | 40.0% | |
| GAGTCTATTGATACGATGTC+TGG | - | 43344:21139-21158 | MS.gene001217:CDS | 40.0% | |
| GTTTCCTGAGCAAATATGAC+CGG | + | 43344:21108-21127 | None:intergenic | 40.0% | |
| TATTGATACGATGTCTGGAG+AGG | - | 43344:21144-21163 | MS.gene001217:CDS | 40.0% | |
| TGAGAACCCAACAACCTAAA+AGG | + | 43344:21314-21333 | None:intergenic | 40.0% | |
| TTGAAGCAACTCGTCGAATT+CGG | - | 43344:20229-20248 | MS.gene001217:CDS | 40.0% | |
| TTGTTAACTCGGAAAGAGAG+CGG | - | 43344:21010-21029 | MS.gene001217:intron | 40.0% | |
| TTGTTGGGTTCTCATCATCT+CGG | - | 43344:21320-21339 | MS.gene001217:intron | 40.0% | |
| ! | AACAACCTAAAAGGGCTAGT+CGG | + | 43344:21305-21324 | None:intergenic | 40.0% |
| ! | AATGCACGTAACTTGCATGT+TGG | - | 43344:20005-20024 | MS.gene001217:intron | 40.0% |
| ! | AGAGTGTTTGAAATGTGGGA+TGG | - | 43344:20365-20384 | MS.gene001217:CDS | 40.0% |
| ! | ATCCGCTCCAAAGTTTTTCA+AGG | + | 43344:19722-19741 | None:intergenic | 40.0% |
| ! | ATGGATTACATCTGCTGTCA+TGG | + | 43344:20334-20353 | None:intergenic | 40.0% |
| ! | CTTTTGCAGAATATACGGCT+AGG | - | 43344:20938-20957 | MS.gene001217:intron | 40.0% |
| ! | GAGCTCTCAGTATGTTTTCT+CGG | + | 43344:21265-21284 | None:intergenic | 40.0% |
| ! | TGTTTGAAATGTGGGATGGA+TGG | - | 43344:20369-20388 | MS.gene001217:CDS | 40.0% |
| !! | GTCTCAAAACCTTTTGAGGA+AGG | - | 43344:20396-20415 | MS.gene001217:intron | 40.0% |
| !!! | ACTAGCCCTTTTAGGTTGTT+GGG | - | 43344:21305-21324 | MS.gene001217:intron | 40.0% |
| AAAGAGAGGCTTCACAGGTT+AGG | - | 43344:21070-21089 | MS.gene001217:CDS | 45.0% | |
| AACATACTGAGAGCTCCTAC+TGG | - | 43344:21269-21288 | MS.gene001217:intron | 45.0% | |
| AAGAGAGGCTTCACAGGTTA+GGG | - | 43344:21071-21090 | MS.gene001217:CDS | 45.0% | |
| AATGGAAAGAGAGGCTTCAC+AGG | - | 43344:21065-21084 | MS.gene001217:CDS | 45.0% | |
| ACATACTGAGAGCTCCTACT+GGG | - | 43344:21270-21289 | MS.gene001217:intron | 45.0% | |
| AGATTCATGGGTTTGTGGAG+AGG | - | 43344:19388-19407 | MS.gene001217:intron | 45.0% | |
| AGCTCTTCTGTTGTTGGGTT+GGG | + | 43344:21386-21405 | None:intergenic | 45.0% | |
| ATGTCAATGGAAGTGACTGC+AGG | - | 43344:19694-19713 | MS.gene001217:CDS | 45.0% | |
| CCACTGAGAACTAGTATGGT+GGG | - | 43344:19555-19574 | MS.gene001217:CDS | 45.0% | |
| GAAGCCACTGAGAACTAGTA+TGG | - | 43344:19551-19570 | MS.gene001217:CDS | 45.0% | |
| GAGCTCATTAAAGTGACTGC+AGG | - | 43344:21401-21420 | MS.gene001217:intron | 45.0% | |
| GTAGCAAGAAGGATCATTCG+AGG | + | 43344:19468-19487 | None:intergenic | 45.0% | |
| GTTTGAGAAGCAGCATAGAG+TGG | - | 43344:21032-21051 | MS.gene001217:intron | 45.0% | |
| TCTGCTGTCATGGCCAATAT+AGG | + | 43344:20324-20343 | None:intergenic | 45.0% | |
| TGAAGCAACTCGTCGAATTC+GGG | - | 43344:20230-20249 | MS.gene001217:CDS | 45.0% | |
| ! | AGCTTGCCTTCAGCAAGTTT+TGG | - | 43344:19578-19597 | MS.gene001217:CDS | 45.0% |
| ! | CGCCTTGAAAAACTTTGGAG+CGG | - | 43344:19717-19736 | MS.gene001217:CDS | 45.0% |
| ! | GCTTGCCTTCAGCAAGTTTT+GGG | - | 43344:19579-19598 | MS.gene001217:CDS | 45.0% |
| ! | TCAGTTTGAAGCCTTCTGTG+CGG | - | 43344:19651-19670 | MS.gene001217:CDS | 45.0% |
| !! | CTGTTCCCAAAACTTGCTGA+AGG | + | 43344:19587-19606 | None:intergenic | 45.0% |
| !! | GTAACTTTGAAGCCAAAGGG+TGG | + | 43344:20912-20931 | None:intergenic | 45.0% |
| !! | TTGTTCCGACTAGCCCTTTT+AGG | - | 43344:21297-21316 | MS.gene001217:intron | 45.0% |
| !!! | CTTCAGCAAGTTTTGGGAAC+AGG | - | 43344:19585-19604 | MS.gene001217:CDS | 45.0% |
| !!! | GACTAGCCCTTTTAGGTTGT+TGG | - | 43344:21304-21323 | MS.gene001217:intron | 45.0% |
| AACAGGCAAGAAGAGACAGC+CGG | - | 43344:19602-19621 | MS.gene001217:CDS | 50.0% | |
| AACTCGTCGAATTCGGGAGA+TGG | - | 43344:20236-20255 | MS.gene001217:CDS | 50.0% | |
| AATTCGGGAGATGGAGAGGA+CGG | - | 43344:20245-20264 | MS.gene001217:CDS | 50.0% | |
| GAGCTCTTCTGTTGTTGGGT+TGG | + | 43344:21387-21406 | None:intergenic | 50.0% | |
| GATGTGAAGTGTGCAGACAG+CGG | - | 43344:19739-19758 | MS.gene001217:intron | 50.0% | |
| GCAAAATCAGCACCACCCTT+TGG | - | 43344:20897-20916 | MS.gene001217:CDS | 50.0% | |
| GCAGGCGCCTTGAAAAACTT+TGG | - | 43344:19712-19731 | MS.gene001217:CDS | 50.0% | |
| GCCACTGAGAACTAGTATGG+TGG | - | 43344:19554-19573 | MS.gene001217:CDS | 50.0% | |
| GGTTAGGGATGAGTATGCAC+CGG | - | 43344:21086-21105 | MS.gene001217:CDS | 50.0% | |
| GTCGGAACAAACTTCCCAGT+AGG | + | 43344:21287-21306 | None:intergenic | 50.0% | |
| TCATGGGTTTGTGGAGAGGA+CGG | - | 43344:19392-19411 | MS.gene001217:intron | 50.0% | |
| TGCGGCAACTGGAAACAGAA+CGG | - | 43344:19426-19445 | MS.gene001217:intron | 50.0% | |
| ! | CCATCAGGCATCTCTTTTCC+CGG | + | 43344:19624-19643 | None:intergenic | 50.0% |
| ! | CCCACCATACTAGTTCTCAG+TGG | + | 43344:19558-19577 | None:intergenic | 50.0% |
| ! | TGCACCGGTCATATTTGCTC+AGG | - | 43344:21101-21120 | MS.gene001217:CDS | 50.0% |
| !! | CTTCTGTTGTTGGGTTGGGA+GGG | + | 43344:21382-21401 | None:intergenic | 50.0% |
| !! | TCTTCTGTTGTTGGGTTGGG+AGG | + | 43344:21383-21402 | None:intergenic | 50.0% |
| ACAGGCAAGAAGAGACAGCC+GGG | - | 43344:19603-19622 | MS.gene001217:CDS | 55.0% | |
| ACGGCGAATGAGGAGACGAA+TGG | - | 43344:20264-20283 | MS.gene001217:CDS | 55.0% | |
| AGGACGGGATCTTCAGTGTG+CGG | - | 43344:19408-19427 | MS.gene001217:intron | 55.0% | |
| CATGGGTTTGTGGAGAGGAC+GGG | - | 43344:19393-19412 | MS.gene001217:intron | 55.0% | |
| CCGGGAAAAGAGATGCCTGA+TGG | - | 43344:19621-19640 | MS.gene001217:CDS | 55.0% | |
| GATCTTCAGTGTGCGGCAAC+TGG | - | 43344:19415-19434 | MS.gene001217:intron | 55.0% | |
| GGGTTCTCATCATCTCGGTG+TGG | - | 43344:21325-21344 | MS.gene001217:intron | 55.0% | |
| GTCGAATTCGGGAGATGGAG+AGG | - | 43344:20241-20260 | MS.gene001217:CDS | 55.0% | |
| TGTGCATAGGCCACTCCACT+CGG | + | 43344:20985-21004 | None:intergenic | 55.0% | |
| CGGCTAGGACCGCTTTCGAA+AGG | - | 43344:20953-20972 | MS.gene001217:intron | 60.0% | |
| GATGGAGAGGACGGCGAATG+AGG | - | 43344:20254-20273 | MS.gene001217:CDS | 60.0% | |
| TAGGCCACTCCACTCGGTAG+CGG | + | 43344:20979-20998 | None:intergenic | 60.0% | |
| TTCGAAAGGCCGCTACCGAG+TGG | - | 43344:20967-20986 | MS.gene001217:intron | 60.0% | |
| ! | CGGTAGCGGCCTTTCGAAAG+CGG | + | 43344:20965-20984 | None:intergenic | 60.0% |
| AAGGCCGCTACCGAGTGGAG+TGG | - | 43344:20972-20991 | MS.gene001217:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43344 | gene | 19079 | 21552 | 19079 | ID=MS.gene001217 |
| 43344 | mRNA | 19079 | 21552 | 19079 | ID=MS.gene001217.t1;Parent=MS.gene001217 |
| 43344 | exon | 21534 | 21552 | 21534 | ID=MS.gene001217.t1.exon1;Parent=MS.gene001217.t1 |
| 43344 | CDS | 21534 | 21552 | 21534 | ID=cds.MS.gene001217.t1;Parent=MS.gene001217.t1 |
| 43344 | exon | 21059 | 21276 | 21059 | ID=MS.gene001217.t1.exon2;Parent=MS.gene001217.t1 |
| 43344 | CDS | 21059 | 21276 | 21059 | ID=cds.MS.gene001217.t1;Parent=MS.gene001217.t1 |
| 43344 | exon | 20789 | 20943 | 20789 | ID=MS.gene001217.t1.exon3;Parent=MS.gene001217.t1 |
| 43344 | CDS | 20789 | 20943 | 20789 | ID=cds.MS.gene001217.t1;Parent=MS.gene001217.t1 |
| 43344 | exon | 20203 | 20404 | 20203 | ID=MS.gene001217.t1.exon4;Parent=MS.gene001217.t1 |
| 43344 | CDS | 20203 | 20404 | 20203 | ID=cds.MS.gene001217.t1;Parent=MS.gene001217.t1 |
| 43344 | exon | 19545 | 19742 | 19545 | ID=MS.gene001217.t1.exon5;Parent=MS.gene001217.t1 |
| 43344 | CDS | 19545 | 19742 | 19545 | ID=cds.MS.gene001217.t1;Parent=MS.gene001217.t1 |
| 43344 | exon | 19208 | 19374 | 19208 | ID=MS.gene001217.t1.exon6;Parent=MS.gene001217.t1 |
| 43344 | CDS | 19208 | 19374 | 19208 | ID=cds.MS.gene001217.t1;Parent=MS.gene001217.t1 |
| 43344 | exon | 19079 | 19130 | 19079 | ID=MS.gene001217.t1.exon7;Parent=MS.gene001217.t1 |
| 43344 | CDS | 19079 | 19130 | 19079 | ID=cds.MS.gene001217.t1;Parent=MS.gene001217.t1 |
| Gene Sequence |
| Protein sequence |
