Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001225.t1 | XP_003631014.2 | 84.1 | 358 | 28 | 2 | 1 | 329 | 626 | 983 | 3.80E-163 | 584.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001225.t1 | Q9C5U0 | 55.9 | 365 | 115 | 6 | 1 | 329 | 706 | 1060 | 7.4e-99 | 362.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001225.t1 | G7LCC4 | 84.1 | 358 | 28 | 2 | 1 | 329 | 383 | 740 | 2.7e-163 | 584.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene001225.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001225.t1 | MTR_8g106150 | 84.078 | 358 | 28 | 2 | 1 | 329 | 626 | 983 | 0.0 | 610 |
| MS.gene001225.t1 | MTR_8g106150 | 71.324 | 136 | 11 | 2 | 348 | 455 | 116 | 251 | 5.50e-49 | 181 |
| MS.gene001225.t1 | MTR_8g106150 | 84.078 | 358 | 28 | 2 | 1 | 329 | 383 | 740 | 0.0 | 607 |
| MS.gene001225.t1 | MTR_5g097410 | 44.011 | 359 | 168 | 6 | 2 | 329 | 845 | 1201 | 1.06e-82 | 278 |
| MS.gene001225.t1 | MTR_5g097410 | 43.949 | 157 | 45 | 3 | 341 | 455 | 332 | 487 | 1.06e-25 | 111 |
| MS.gene001225.t1 | MTR_8g080770 | 41.341 | 358 | 163 | 8 | 2 | 328 | 505 | 846 | 1.90e-78 | 261 |
| MS.gene001225.t1 | MTR_8g080770 | 42.683 | 164 | 49 | 4 | 347 | 465 | 1 | 164 | 7.47e-24 | 105 |
| MS.gene001225.t1 | MTR_8g080770 | 41.341 | 358 | 163 | 8 | 2 | 328 | 614 | 955 | 1.16e-77 | 261 |
| MS.gene001225.t1 | MTR_8g080770 | 42.945 | 163 | 48 | 4 | 348 | 465 | 111 | 273 | 1.13e-23 | 105 |
| MS.gene001225.t1 | MTR_3g085130 | 41.989 | 362 | 160 | 8 | 2 | 328 | 463 | 809 | 1.38e-76 | 256 |
| MS.gene001225.t1 | MTR_3g085130 | 52.113 | 71 | 32 | 2 | 397 | 465 | 48 | 118 | 6.22e-11 | 65.5 |
| MS.gene001225.t1 | MTR_3g085130 | 41.989 | 362 | 160 | 8 | 2 | 328 | 673 | 1019 | 9.99e-75 | 254 |
| MS.gene001225.t1 | MTR_3g085130 | 44.172 | 163 | 46 | 4 | 348 | 465 | 166 | 328 | 9.89e-25 | 108 |
| MS.gene001225.t1 | MTR_5g044100 | 43.448 | 145 | 44 | 2 | 147 | 278 | 104 | 223 | 1.92e-25 | 104 |
| MS.gene001225.t1 | MTR_2g067240 | 73.134 | 67 | 17 | 1 | 397 | 462 | 3 | 69 | 2.65e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001225.t1 | AT2G01830 | 55.890 | 365 | 115 | 6 | 1 | 329 | 683 | 1037 | 4.20e-121 | 379 |
| MS.gene001225.t1 | AT2G01830 | 62.044 | 137 | 23 | 3 | 348 | 455 | 181 | 317 | 1.62e-38 | 150 |
| MS.gene001225.t1 | AT2G01830 | 55.890 | 365 | 115 | 6 | 1 | 329 | 683 | 1037 | 4.20e-121 | 379 |
| MS.gene001225.t1 | AT2G01830 | 62.044 | 137 | 23 | 3 | 348 | 455 | 181 | 317 | 1.62e-38 | 150 |
| MS.gene001225.t1 | AT2G01830 | 55.890 | 365 | 115 | 6 | 1 | 329 | 683 | 1037 | 4.20e-121 | 379 |
| MS.gene001225.t1 | AT2G01830 | 62.044 | 137 | 23 | 3 | 348 | 455 | 181 | 317 | 1.62e-38 | 150 |
| MS.gene001225.t1 | AT2G01830 | 55.890 | 365 | 115 | 6 | 1 | 329 | 683 | 1037 | 4.20e-121 | 379 |
| MS.gene001225.t1 | AT2G01830 | 62.044 | 137 | 23 | 3 | 348 | 455 | 181 | 317 | 1.62e-38 | 150 |
| MS.gene001225.t1 | AT2G01830 | 55.890 | 365 | 115 | 6 | 1 | 329 | 695 | 1049 | 9.39e-121 | 378 |
| MS.gene001225.t1 | AT2G01830 | 62.044 | 137 | 23 | 3 | 348 | 455 | 193 | 329 | 1.88e-38 | 149 |
| MS.gene001225.t1 | AT2G01830 | 55.890 | 365 | 115 | 6 | 1 | 329 | 706 | 1060 | 1.07e-120 | 378 |
| MS.gene001225.t1 | AT2G01830 | 62.044 | 137 | 23 | 3 | 348 | 455 | 204 | 340 | 2.15e-38 | 149 |
| MS.gene001225.t1 | AT5G35750 | 47.222 | 360 | 153 | 8 | 2 | 332 | 814 | 1165 | 6.73e-91 | 300 |
| MS.gene001225.t1 | AT5G35750 | 45.333 | 150 | 40 | 2 | 348 | 455 | 308 | 457 | 7.49e-27 | 115 |
| MS.gene001225.t1 | AT1G27320 | 45.000 | 360 | 152 | 9 | 2 | 328 | 670 | 1016 | 6.07e-84 | 279 |
| MS.gene001225.t1 | AT1G27320 | 39.877 | 163 | 53 | 3 | 348 | 465 | 169 | 331 | 3.64e-22 | 100 |
Find 0 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTAATTTTTTTTTTTT+TGG | + | 43346:31472-31491 | MS.gene001225:intron | 0.0% |
| !! | ATGATTTATAAAAAACAATA+TGG | - | 43346:31796-31815 | None:intergenic | 10.0% |
| !! | ATTAAATGAGTTAAAATATT+TGG | + | 43346:30934-30953 | MS.gene001225:intron | 10.0% |
| !! | TGATTTATAAAAAACAATAT+GGG | - | 43346:31795-31814 | None:intergenic | 10.0% |
| !!! | TTTTTAGTGAATTAAAGTTA+AGG | + | 43346:30751-30770 | MS.gene001225:intron | 15.0% |
| !! | CAATGTCATTAATTACAAAA+AGG | - | 43346:30728-30747 | None:intergenic | 20.0% |
| !! | GTGTTTAGTATAAAAATCTT+GGG | + | 43346:33119-33138 | MS.gene001225:CDS | 20.0% |
| !! | TCTCAACAAAAATAATATCA+GGG | - | 43346:30978-30997 | None:intergenic | 20.0% |
| !! | TGTGTTTAGTATAAAAATCT+TGG | + | 43346:33118-33137 | MS.gene001225:CDS | 20.0% |
| !! | TTCTCAACAAAAATAATATC+AGG | - | 43346:30979-30998 | None:intergenic | 20.0% |
| !!! | ACTGTTAATTGAGTATTTTT+TGG | + | 43346:32382-32401 | MS.gene001225:intron | 20.0% |
| !!! | ATAAAAGTATCTGAGATTTT+AGG | + | 43346:32303-32322 | MS.gene001225:intron | 20.0% |
| !!! | CTGTTAATTGAGTATTTTTT+GGG | + | 43346:32383-32402 | MS.gene001225:intron | 20.0% |
| !!! | TTTCTGTGTAATTTTTGAAA+TGG | + | 43346:32176-32195 | MS.gene001225:intron | 20.0% |
| ! | AACAAACATAACATGTATAG+AGG | - | 43346:31747-31766 | None:intergenic | 25.0% |
| ! | AATAAAGAGAAAAGTGACAA+AGG | - | 43346:32141-32160 | None:intergenic | 25.0% |
| ! | ACAAACATAACATGTATAGA+GGG | - | 43346:31746-31765 | None:intergenic | 25.0% |
| ! | GTCAAATAAACTTTATAAGC+CGG | + | 43346:30426-30445 | MS.gene001225:CDS | 25.0% |
| ! | TAAATTCCGTTTACCTATAT+TGG | + | 43346:31916-31935 | MS.gene001225:CDS | 25.0% |
| ! | TATCATTGAATTTATCAGCA+AGG | - | 43346:31580-31599 | None:intergenic | 25.0% |
| ! | TGAGTTAAAATATTTGGTTG+TGG | + | 43346:30940-30959 | MS.gene001225:intron | 25.0% |
| ! | TGTTTCATATGAGTAATTAG+AGG | + | 43346:33087-33106 | MS.gene001225:intron | 25.0% |
| !! | AGAAACTTTTGCAGAATATA+CGG | + | 43346:32541-32560 | MS.gene001225:CDS | 25.0% |
| !! | CATGTACTTACATTATTTTC+AGG | + | 43346:31813-31832 | MS.gene001225:intron | 25.0% |
| !! | TGTATTAGTTAGTATTGAAC+TGG | + | 43346:32088-32107 | MS.gene001225:intron | 25.0% |
| !! | TTTTGTTGAGAAAGATTCAT+GGG | + | 43346:30987-31006 | MS.gene001225:CDS | 25.0% |
| !! | TTTTTGTTGAGAAAGATTCA+TGG | + | 43346:30986-31005 | MS.gene001225:CDS | 25.0% |
| !!! | AGTTTTTTCTAAATCAGCAA+AGG | - | 43346:31524-31543 | None:intergenic | 25.0% |
| !!! | GCACGAACTTTTTTATATAT+AGG | - | 43346:32362-32381 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTATGAGCATATA+TGG | + | 43346:32056-32075 | MS.gene001225:intron | 25.0% |
| AATAAAAACAAGCAGAGGAA+TGG | - | 43346:32798-32817 | None:intergenic | 30.0% | |
| AGCTGAAACATAGTGAAATA+AGG | - | 43346:33041-33060 | None:intergenic | 30.0% | |
| ATTCAAATGCAAGAAATGGA+CGG | + | 43346:31431-31450 | MS.gene001225:CDS | 30.0% | |
| CAACAAAAATAATATCAGGG+TGG | - | 43346:30975-30994 | None:intergenic | 30.0% | |
| CACTATATCACTAAAACATG+CGG | - | 43346:31137-31156 | None:intergenic | 30.0% | |
| GAAAGAGATTTAGTGTTAGT+TGG | + | 43346:32449-32468 | MS.gene001225:intron | 30.0% | |
| GGATATTCAAATGCAAGAAA+TGG | + | 43346:31427-31446 | MS.gene001225:CDS | 30.0% | |
| TACTAATATTCGTAGCAAGA+AGG | - | 43346:31090-31109 | None:intergenic | 30.0% | |
| TAGAGTGGTTATAAAGACAA+TGG | + | 43346:32655-32674 | MS.gene001225:CDS | 30.0% | |
| TATAAAGACAATGGAAAGAG+AGG | + | 43346:32664-32683 | MS.gene001225:CDS | 30.0% | |
| TATGAGTAATTAGAGGATGA+AGG | + | 43346:33094-33113 | MS.gene001225:intron | 30.0% | |
| TGAACTCTTCTTCATATCTA+TGG | - | 43346:32413-32432 | None:intergenic | 30.0% | |
| TTAAAATATTTGGTTGTGGC+AGG | + | 43346:30944-30963 | MS.gene001225:intron | 30.0% | |
| ! | ATTAGTTAGTATTGAACTGG+TGG | + | 43346:32091-32110 | MS.gene001225:intron | 30.0% |
| ! | TTATGTCTCAAAACCTTTTG+AGG | + | 43346:32000-32019 | MS.gene001225:CDS | 30.0% |
| !! | ATGAAGAGTGTTTGAAATGT+GGG | + | 43346:31969-31988 | MS.gene001225:CDS | 30.0% |
| !! | ATTTCTCATTTTTGCAATGC+AGG | + | 43346:32843-32862 | MS.gene001225:intron | 30.0% |
| !! | ATTTTAGTGGTTGATGTCAA+TGG | + | 43346:31292-31311 | MS.gene001225:intron | 30.0% |
| !! | TATGAAGAGTGTTTGAAATG+TGG | + | 43346:31968-31987 | MS.gene001225:CDS | 30.0% |
| AAAATCCGCGGTAAATGAAA+AGG | - | 43346:30468-30487 | None:intergenic | 35.0% | |
| AACACTCTTCATATGTAGCA+TGG | - | 43346:31961-31980 | None:intergenic | 35.0% | |
| ACATCGTATCAATAGACTCA+AGG | - | 43346:32746-32765 | None:intergenic | 35.0% | |
| AGATACCATTTGAAGAGACT+TGG | + | 43346:30611-30630 | MS.gene001225:CDS | 35.0% | |
| ATTAAAAACTTACCCTGTGC+TGG | - | 43346:30702-30721 | None:intergenic | 35.0% | |
| CCACAAATAAAAACAAGCAG+AGG | - | 43346:32803-32822 | None:intergenic | 35.0% | |
| CGTAAATATTCCAAAATCCG+CGG | - | 43346:30480-30499 | None:intergenic | 35.0% | |
| GAAGAAGAGTTCAGAGAAAT+AGG | + | 43346:32420-32439 | MS.gene001225:intron | 35.0% | |
| GATACCATTTGAAGAGACTT+GGG | + | 43346:30612-30631 | MS.gene001225:CDS | 35.0% | |
| GGGAGCTTAAATTTGTAAAC+AGG | - | 43346:32970-32989 | None:intergenic | 35.0% | |
| GTTAACAACTCTTTGTGCAT+AGG | - | 43346:32606-32625 | None:intergenic | 35.0% | |
| GTTTCTTTGTGTGGGAAAAA+TGG | + | 43346:30671-30690 | MS.gene001225:CDS | 35.0% | |
| TAATGAGCTCTTCTGTTGTT+GGG | - | 43346:32999-33018 | None:intergenic | 35.0% | |
| TACGAAGAATCCAATAACTG+AGG | + | 43346:30496-30515 | MS.gene001225:CDS | 35.0% | |
| TCATGGCCAATATAGGTAAA+CGG | - | 43346:31925-31944 | None:intergenic | 35.0% | |
| TGAACAATTCCTTCCTCAAA+AGG | - | 43346:32016-32035 | None:intergenic | 35.0% | |
| TGCACAAAGAGTTGTTAACT+CGG | + | 43346:32607-32626 | MS.gene001225:CDS | 35.0% | |
| TGCTGTAATGTTACTGTACT+TGG | + | 43346:32244-32263 | MS.gene001225:intron | 35.0% | |
| TTAATGAGCTCTTCTGTTGT+TGG | - | 43346:33000-33019 | None:intergenic | 35.0% | |
| TTACGTGGATTCAATTTACG+TGG | - | 43346:31604-31623 | None:intergenic | 35.0% | |
| TTCAAATGCAAGAAATGGAC+GGG | + | 43346:31432-31451 | MS.gene001225:CDS | 35.0% | |
| ! | AAATTTTCATTCCGCACAGA+AGG | - | 43346:31276-31295 | None:intergenic | 35.0% |
| ! | AAGTACCTTTTCATTTACCG+CGG | + | 43346:30460-30479 | MS.gene001225:CDS | 35.0% |
| ! | CATCTAAAGTCACACATGAT+CGG | + | 43346:30796-30815 | MS.gene001225:intron | 35.0% |
| ! | GTGCGGAATGAAAATTTTAG+TGG | + | 43346:31279-31298 | MS.gene001225:intron | 35.0% |
| ! | TCTCAGATACTTTTATCTGC+TGG | - | 43346:32299-32318 | None:intergenic | 35.0% |
| ! | TTGCATTTGTTCTTGTTGTG+TGG | + | 43346:30895-30914 | MS.gene001225:intron | 35.0% |
| ! | TTTTCATTTACCGCGGATTT+TGG | + | 43346:30467-30486 | MS.gene001225:CDS | 35.0% |
| !! | AATAAGGCTGTTTCTTTGTG+TGG | + | 43346:30662-30681 | MS.gene001225:CDS | 35.0% |
| !! | AGTGTTAGTTGGTGTTGTAA+TGG | + | 43346:32460-32479 | MS.gene001225:intron | 35.0% |
| !! | ATAAGGCTGTTTCTTTGTGT+GGG | + | 43346:30663-30682 | MS.gene001225:CDS | 35.0% |
| !! | CAAAGAAACAGCCTTATTGA+TGG | - | 43346:30660-30679 | None:intergenic | 35.0% |
| !! | CTTGTAACTTTGAAGCCAAA+GGG | - | 43346:32523-32542 | None:intergenic | 35.0% |
| !! | GTGTTAGTTGGTGTTGTAAT+GGG | + | 43346:32461-32480 | MS.gene001225:intron | 35.0% |
| !! | TAGTCTAAGATGTGTTGGTT+TGG | + | 43346:32202-32221 | MS.gene001225:intron | 35.0% |
| !! | TCTTGTAACTTTGAAGCCAA+AGG | - | 43346:32524-32543 | None:intergenic | 35.0% |
| !! | TTAAACCCTCTAAAACTGGA+TGG | - | 43346:30548-30567 | None:intergenic | 35.0% |
| !! | TTTTGAGGAAGGAATTGTTC+AGG | + | 43346:32015-32034 | MS.gene001225:CDS | 35.0% |
| !!! | ATCTACCATCCAGTTTTAGA+GGG | + | 43346:30540-30559 | MS.gene001225:CDS | 35.0% |
| !!! | CCTCTGCTTGTTTTTATTTG+TGG | + | 43346:32800-32819 | MS.gene001225:intron | 35.0% |
| !!! | CTGCTTGTTTTTATTTGTGG+AGG | + | 43346:32803-32822 | MS.gene001225:intron | 35.0% |
| AAGCAAGCATCAAACTTGTG+AGG | - | 43346:31404-31423 | None:intergenic | 40.0% | |
| AAGTGCCTAGCTGAACTAAT+GGG | + | 43346:30401-30420 | MS.gene001225:CDS | 40.0% | |
| ACCTTCTTCACCTCAGTTAT+TGG | - | 43346:30509-30528 | None:intergenic | 40.0% | |
| ACTGATACTCAAACCAATGC+CGG | - | 43346:30381-30400 | None:intergenic | 40.0% | |
| AGCAAGCATCAAACTTGTGA+GGG | - | 43346:31403-31422 | None:intergenic | 40.0% | |
| AGCTCATTAAAGTGACTGCA+GGG | + | 43346:33010-33029 | MS.gene001225:CDS | 40.0% | |
| CAAACTGAAGTTGAACCATC+AGG | - | 43346:31250-31269 | None:intergenic | 40.0% | |
| CAAGTTTGATGCTTGCTTCA+AGG | + | 43346:31406-31425 | MS.gene001225:CDS | 40.0% | |
| CGAATGGTGAATGTAGTGAA+AGG | + | 43346:31888-31907 | MS.gene001225:CDS | 40.0% | |
| CGATCATGTGTGACTTTAGA+TGG | - | 43346:30798-30817 | None:intergenic | 40.0% | |
| GAGAAAGATTCATGGGTTTG+TGG | + | 43346:30994-31013 | MS.gene001225:CDS | 40.0% | |
| GAGAACCCAACAACCTAAAA+GGG | - | 43346:32921-32940 | None:intergenic | 40.0% | |
| GAGTCTATTGATACGATGTC+TGG | + | 43346:32747-32766 | MS.gene001225:intron | 40.0% | |
| GTATCCCAAGTCTCTTCAAA+TGG | - | 43346:30619-30638 | None:intergenic | 40.0% | |
| GTTTCCTGAGCAAATATGAC+CGG | - | 43346:32716-32735 | None:intergenic | 40.0% | |
| TAAGTGCCTAGCTGAACTAA+TGG | + | 43346:30400-30419 | MS.gene001225:CDS | 40.0% | |
| TATTGATACGATGTCTGGAG+AGG | + | 43346:32752-32771 | MS.gene001225:intron | 40.0% | |
| TCCAATAACTGAGGTGAAGA+AGG | + | 43346:30505-30524 | MS.gene001225:CDS | 40.0% | |
| TCTAGAAACTATGGTGGTAC+CGG | + | 43346:30359-30378 | MS.gene001225:CDS | 40.0% | |
| TGAGAACCCAACAACCTAAA+AGG | - | 43346:32922-32941 | None:intergenic | 40.0% | |
| TTAAAGCCGTTGTGGTTGAT+GGG | + | 43346:30564-30583 | MS.gene001225:CDS | 40.0% | |
| TTGAAGCAACTCGTCGAATT+CGG | + | 43346:31837-31856 | MS.gene001225:CDS | 40.0% | |
| TTGTTAACTCGGAAAGAGAG+CGG | + | 43346:32618-32637 | MS.gene001225:CDS | 40.0% | |
| TTGTTGGGTTCTCATCATCT+CGG | + | 43346:32928-32947 | MS.gene001225:CDS | 40.0% | |
| ! | AACAACCTAAAAGGGCTAGT+CGG | - | 43346:32913-32932 | None:intergenic | 40.0% |
| ! | AATCCACGTAACTTGCATGT+TGG | + | 43346:31613-31632 | MS.gene001225:intron | 40.0% |
| ! | AGAGTGTTTGAAATGTGGGA+TGG | + | 43346:31973-31992 | MS.gene001225:CDS | 40.0% |
| ! | AGCTCGACTTCTAGAAACTA+TGG | + | 43346:30350-30369 | MS.gene001225:CDS | 40.0% |
| ! | ATCCGCTCCAAAGTTTTTCA+AGG | - | 43346:31333-31352 | None:intergenic | 40.0% |
| ! | ATGGATTACATCTGCTGTCA+TGG | - | 43346:31942-31961 | None:intergenic | 40.0% |
| ! | CTTTTGCAGAATATACGGCT+AGG | + | 43346:32546-32565 | MS.gene001225:CDS | 40.0% |
| ! | GAGCTCTCAGTATGTTTTCT+CGG | - | 43346:32873-32892 | None:intergenic | 40.0% |
| ! | GGTCTTAGTCTAAGATGTGT+TGG | + | 43346:32197-32216 | MS.gene001225:intron | 40.0% |
| ! | TCGACTTCTAGAAACTATGG+TGG | + | 43346:30353-30372 | MS.gene001225:CDS | 40.0% |
| ! | TGTTTGAAATGTGGGATGGA+TGG | + | 43346:31977-31996 | MS.gene001225:CDS | 40.0% |
| ! | TTTAAAGCCGTTGTGGTTGA+TGG | + | 43346:30563-30582 | MS.gene001225:CDS | 40.0% |
| !! | GAAAAGGTACTTCTAACCTG+CGG | - | 43346:30452-30471 | None:intergenic | 40.0% |
| !! | GATCTACCATCCAGTTTTAG+AGG | + | 43346:30539-30558 | MS.gene001225:CDS | 40.0% |
| !! | GGCTTTAAACCCTCTAAAAC+TGG | - | 43346:30552-30571 | None:intergenic | 40.0% |
| !! | GTCTCAAAACCTTTTGAGGA+AGG | + | 43346:32004-32023 | MS.gene001225:CDS | 40.0% |
| !!! | ACTAGCCCTTTTAGGTTGTT+GGG | + | 43346:32913-32932 | MS.gene001225:CDS | 40.0% |
| AAAAATGGTGCTTCCAGCAC+AGG | + | 43346:30686-30705 | MS.gene001225:CDS | 45.0% | |
| AAAATGGTGCTTCCAGCACA+GGG | + | 43346:30687-30706 | MS.gene001225:CDS | 45.0% | |
| AAAGAGAGGCTTCACAGGTT+AGG | + | 43346:32678-32697 | MS.gene001225:intron | 45.0% | |
| AACATACTGAGAGCTCCTAC+TGG | + | 43346:32877-32896 | MS.gene001225:CDS | 45.0% | |
| AAGAGAGGCTTCACAGGTTA+GGG | + | 43346:32679-32698 | MS.gene001225:intron | 45.0% | |
| AATGGAAAGAGAGGCTTCAC+AGG | + | 43346:32673-32692 | MS.gene001225:CDS | 45.0% | |
| ACATACTGAGAGCTCCTACT+GGG | + | 43346:32878-32897 | MS.gene001225:CDS | 45.0% | |
| AGATTCATGGGTTTGTGGAG+AGG | + | 43346:30999-31018 | MS.gene001225:CDS | 45.0% | |
| AGCTCTTCTGTTGTTGGGTT+GGG | - | 43346:32994-33013 | None:intergenic | 45.0% | |
| AGGTTTCCCATCAACCACAA+CGG | - | 43346:30573-30592 | None:intergenic | 45.0% | |
| AGTCGCAAACGCCATCAATA+AGG | + | 43346:30646-30665 | MS.gene001225:CDS | 45.0% | |
| ATGTCAATGGAAGTGACTGC+AGG | + | 43346:31305-31324 | MS.gene001225:CDS | 45.0% | |
| CCACTGAGAACTAGTATGGT+GGG | + | 43346:31166-31185 | MS.gene001225:CDS | 45.0% | |
| GAAGCCACTGAGAACTAGTA+TGG | + | 43346:31162-31181 | MS.gene001225:CDS | 45.0% | |
| GAGCTATCTGCCTTCACAAA+AGG | - | 43346:30335-30354 | None:intergenic | 45.0% | |
| GAGCTCATTAAAGTGACTGC+AGG | + | 43346:33009-33028 | MS.gene001225:CDS | 45.0% | |
| GTAGCAAGAAGGATCATTCG+AGG | - | 43346:31079-31098 | None:intergenic | 45.0% | |
| GTTTGAGAAGCAGCATAGAG+TGG | + | 43346:32640-32659 | MS.gene001225:CDS | 45.0% | |
| TAGCCAACATGCAAGTTACG+TGG | - | 43346:31619-31638 | None:intergenic | 45.0% | |
| TCTGCTGTCATGGCCAATAT+AGG | - | 43346:31932-31951 | None:intergenic | 45.0% | |
| TGAAGCAACTCGTCGAATTC+GGG | + | 43346:31838-31857 | MS.gene001225:CDS | 45.0% | |
| ! | AGCTTGCCTTCAGCAAGTTT+TGG | + | 43346:31189-31208 | MS.gene001225:CDS | 45.0% |
| ! | CGCCTTGAAAAACTTTGGAG+CGG | + | 43346:31328-31347 | MS.gene001225:CDS | 45.0% |
| ! | GCTTGCCTTCAGCAAGTTTT+GGG | + | 43346:31190-31209 | MS.gene001225:CDS | 45.0% |
| ! | TAGAGGGTTTAAAGCCGTTG+TGG | + | 43346:30556-30575 | MS.gene001225:CDS | 45.0% |
| ! | TCAGTTTGAAGCCTTCTGTG+CGG | + | 43346:31262-31281 | MS.gene001225:intron | 45.0% |
| !! | CTGTTCCCAAAACTTGCTGA+AGG | - | 43346:31198-31217 | None:intergenic | 45.0% |
| !! | GTAACTTTGAAGCCAAAGGG+TGG | - | 43346:32520-32539 | None:intergenic | 45.0% |
| !! | TTGTTCCGACTAGCCCTTTT+AGG | + | 43346:32905-32924 | MS.gene001225:CDS | 45.0% |
| !!! | CTTCAGCAAGTTTTGGGAAC+AGG | + | 43346:31196-31215 | MS.gene001225:CDS | 45.0% |
| !!! | GACTAGCCCTTTTAGGTTGT+TGG | + | 43346:32912-32931 | MS.gene001225:CDS | 45.0% |
| AAACTTTATAAGCCGGCCGC+AGG | + | 43346:30433-30452 | MS.gene001225:CDS | 50.0% | |
| AACAGGCAAGAAGAGACAGC+CGG | + | 43346:31213-31232 | MS.gene001225:CDS | 50.0% | |
| AACTCGTCGAATTCGGGAGA+TGG | + | 43346:31844-31863 | MS.gene001225:CDS | 50.0% | |
| AATTCGGGAGATGGAGAGGA+CGG | + | 43346:31853-31872 | MS.gene001225:CDS | 50.0% | |
| GAGCTCTTCTGTTGTTGGGT+TGG | - | 43346:32995-33014 | None:intergenic | 50.0% | |
| GATGTGAAGTGTGCAGACAG+CGG | + | 43346:31350-31369 | MS.gene001225:CDS | 50.0% | |
| GCAAAATCAGCACCACCCTT+TGG | + | 43346:32505-32524 | MS.gene001225:CDS | 50.0% | |
| GCAGGCGCCTTGAAAAACTT+TGG | + | 43346:31323-31342 | MS.gene001225:CDS | 50.0% | |
| GCCACTGAGAACTAGTATGG+TGG | + | 43346:31165-31184 | MS.gene001225:CDS | 50.0% | |
| GGTTAGGGATGAGTATGCAC+CGG | + | 43346:32694-32713 | MS.gene001225:intron | 50.0% | |
| GTCGGAACAAACTTCCCAGT+AGG | - | 43346:32895-32914 | None:intergenic | 50.0% | |
| TCATGGGTTTGTGGAGAGGA+CGG | + | 43346:31003-31022 | MS.gene001225:CDS | 50.0% | |
| TGCCTAGCTGAACTAATGGG+CGG | + | 43346:30404-30423 | MS.gene001225:CDS | 50.0% | |
| TGCGGCAACTGGAAACAGAA+CGG | + | 43346:31037-31056 | MS.gene001225:intron | 50.0% | |
| ! | CCATCAGGCATCTCTTTTCC+CGG | - | 43346:31235-31254 | None:intergenic | 50.0% |
| ! | CCCACCATACTAGTTCTCAG+TGG | - | 43346:31169-31188 | None:intergenic | 50.0% |
| ! | CTAGTCACAGCAGCTCTAAC+AGG | - | 43346:30593-30612 | None:intergenic | 50.0% |
| ! | TGCACCGGTCATATTTGCTC+AGG | + | 43346:32709-32728 | MS.gene001225:intron | 50.0% |
| !! | AACTATGGTGGTACCGGCAT+TGG | + | 43346:30365-30384 | MS.gene001225:CDS | 50.0% |
| !! | CTTCTGTTGTTGGGTTGGGA+GGG | - | 43346:32990-33009 | None:intergenic | 50.0% |
| !! | TCTTCTGTTGTTGGGTTGGG+AGG | - | 43346:32991-33010 | None:intergenic | 50.0% |
| ACAGGCAAGAAGAGACAGCC+GGG | + | 43346:31214-31233 | MS.gene001225:CDS | 55.0% | |
| ACGGCGAATGAGGAGACGAA+TGG | + | 43346:31872-31891 | MS.gene001225:CDS | 55.0% | |
| AGGACGGGATCTTCAGTGTG+CGG | + | 43346:31019-31038 | MS.gene001225:intron | 55.0% | |
| AGGTACTTCTAACCTGCGGC+CGG | - | 43346:30448-30467 | None:intergenic | 55.0% | |
| CATGGGTTTGTGGAGAGGAC+GGG | + | 43346:31004-31023 | MS.gene001225:CDS | 55.0% | |
| CCGGGAAAAGAGATGCCTGA+TGG | + | 43346:31232-31251 | MS.gene001225:CDS | 55.0% | |
| GACCGCCCATTAGTTCAGCT+AGG | - | 43346:30409-30428 | None:intergenic | 55.0% | |
| GATCTTCAGTGTGCGGCAAC+TGG | + | 43346:31026-31045 | MS.gene001225:intron | 55.0% | |
| GGGTTCTCATCATCTCGGTG+TGG | + | 43346:32933-32952 | MS.gene001225:CDS | 55.0% | |
| GTCGAATTCGGGAGATGGAG+AGG | + | 43346:31849-31868 | MS.gene001225:CDS | 55.0% | |
| TGTGCATAGGCCACTCCACT+CGG | - | 43346:32593-32612 | None:intergenic | 55.0% | |
| CGGCTAGGACCGCTTTCGAA+AGG | + | 43346:32561-32580 | MS.gene001225:CDS | 60.0% | |
| GATGGAGAGGACGGCGAATG+AGG | + | 43346:31862-31881 | MS.gene001225:CDS | 60.0% | |
| TAGGCCACTCCACTCGGTAG+CGG | - | 43346:32587-32606 | None:intergenic | 60.0% | |
| TTCGAAAGGCCGCTACCGAG+TGG | + | 43346:32575-32594 | MS.gene001225:CDS | 60.0% | |
| ! | CGGTAGCGGCCTTTCGAAAG+CGG | - | 43346:32573-32592 | None:intergenic | 60.0% |
| AAGGCCGCTACCGAGTGGAG+TGG | + | 43346:32580-32599 | MS.gene001225:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43346 | gene | 30329 | 33160 | 30329 | ID=MS.gene001225 |
| 43346 | mRNA | 30329 | 33160 | 30329 | ID=MS.gene001225.t1;Parent=MS.gene001225 |
| 43346 | exon | 30329 | 30708 | 30329 | ID=MS.gene001225.t1.exon1;Parent=MS.gene001225.t1 |
| 43346 | CDS | 30329 | 30708 | 30329 | ID=cds.MS.gene001225.t1;Parent=MS.gene001225.t1 |
| 43346 | exon | 30966 | 31035 | 30966 | ID=MS.gene001225.t1.exon2;Parent=MS.gene001225.t1 |
| 43346 | CDS | 30966 | 31035 | 30966 | ID=cds.MS.gene001225.t1;Parent=MS.gene001225.t1 |
| 43346 | exon | 31073 | 31264 | 31073 | ID=MS.gene001225.t1.exon3;Parent=MS.gene001225.t1 |
| 43346 | CDS | 31073 | 31264 | 31073 | ID=cds.MS.gene001225.t1;Parent=MS.gene001225.t1 |
| 43346 | exon | 31299 | 31453 | 31299 | ID=MS.gene001225.t1.exon4;Parent=MS.gene001225.t1 |
| 43346 | CDS | 31299 | 31453 | 31299 | ID=cds.MS.gene001225.t1;Parent=MS.gene001225.t1 |
| 43346 | exon | 31835 | 32036 | 31835 | ID=MS.gene001225.t1.exon5;Parent=MS.gene001225.t1 |
| 43346 | CDS | 31835 | 32036 | 31835 | ID=cds.MS.gene001225.t1;Parent=MS.gene001225.t1 |
| 43346 | exon | 32497 | 32694 | 32497 | ID=MS.gene001225.t1.exon6;Parent=MS.gene001225.t1 |
| 43346 | CDS | 32497 | 32694 | 32497 | ID=cds.MS.gene001225.t1;Parent=MS.gene001225.t1 |
| 43346 | exon | 32865 | 33031 | 32865 | ID=MS.gene001225.t1.exon7;Parent=MS.gene001225.t1 |
| 43346 | CDS | 32865 | 33031 | 32865 | ID=cds.MS.gene001225.t1;Parent=MS.gene001225.t1 |
| 43346 | exon | 33109 | 33160 | 33109 | ID=MS.gene001225.t1.exon8;Parent=MS.gene001225.t1 |
| 43346 | CDS | 33109 | 33160 | 33109 | ID=cds.MS.gene001225.t1;Parent=MS.gene001225.t1 |
| Gene Sequence |
| Protein sequence |
