Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001231.t1 | XP_003631014.2 | 84.4 | 358 | 27 | 2 | 1 | 329 | 626 | 983 | 1.50E-164 | 589 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001231.t1 | Q9C5U0 | 55.6 | 374 | 120 | 6 | 1 | 338 | 706 | 1069 | 7.9e-101 | 368.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001231.t1 | G7LCC4 | 84.4 | 358 | 27 | 2 | 1 | 329 | 383 | 740 | 1.1e-164 | 589.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene001231.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001231.t1 | MTR_8g106150 | 84.358 | 358 | 27 | 2 | 1 | 329 | 626 | 983 | 0.0 | 612 |
| MS.gene001231.t1 | MTR_8g106150 | 84.358 | 358 | 27 | 2 | 1 | 329 | 383 | 740 | 0.0 | 610 |
| MS.gene001231.t1 | MTR_5g097410 | 44.568 | 359 | 166 | 6 | 2 | 329 | 845 | 1201 | 2.36e-85 | 281 |
| MS.gene001231.t1 | MTR_8g080770 | 41.899 | 358 | 161 | 8 | 2 | 328 | 505 | 846 | 1.46e-81 | 266 |
| MS.gene001231.t1 | MTR_8g080770 | 41.899 | 358 | 161 | 8 | 2 | 328 | 614 | 955 | 8.13e-81 | 265 |
| MS.gene001231.t1 | MTR_3g085130 | 42.818 | 362 | 157 | 8 | 2 | 328 | 463 | 809 | 5.61e-80 | 261 |
| MS.gene001231.t1 | MTR_3g085130 | 42.818 | 362 | 157 | 8 | 2 | 328 | 673 | 1019 | 3.34e-78 | 259 |
| MS.gene001231.t1 | MTR_5g044100 | 50.000 | 132 | 54 | 4 | 147 | 278 | 104 | 223 | 2.88e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001231.t1 | AT2G01830 | 55.467 | 375 | 121 | 6 | 1 | 339 | 706 | 1070 | 1.89e-125 | 386 |
| MS.gene001231.t1 | AT2G01830 | 55.615 | 374 | 120 | 6 | 1 | 338 | 683 | 1046 | 2.56e-125 | 385 |
| MS.gene001231.t1 | AT2G01830 | 55.615 | 374 | 120 | 6 | 1 | 338 | 683 | 1046 | 2.56e-125 | 385 |
| MS.gene001231.t1 | AT2G01830 | 55.615 | 374 | 120 | 6 | 1 | 338 | 683 | 1046 | 2.56e-125 | 385 |
| MS.gene001231.t1 | AT2G01830 | 55.615 | 374 | 120 | 6 | 1 | 338 | 683 | 1046 | 2.56e-125 | 385 |
| MS.gene001231.t1 | AT2G01830 | 55.467 | 375 | 121 | 6 | 1 | 339 | 695 | 1059 | 2.59e-125 | 386 |
| MS.gene001231.t1 | AT5G35750 | 47.397 | 365 | 155 | 8 | 2 | 337 | 814 | 1170 | 5.41e-94 | 304 |
| MS.gene001231.t1 | AT1G27320 | 45.352 | 355 | 158 | 8 | 2 | 328 | 670 | 1016 | 6.85e-86 | 280 |
Find 0 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTAATTTTTTTTTTTTT+TGG | + | 42501:130520-130539 | MS.gene001231:intron | 0.0% |
| !! | ATGATTTATAAAAAACAATA+TGG | - | 42501:130844-130863 | None:intergenic | 10.0% |
| !! | ATTAAATGAGTTAAAATATT+TGG | + | 42501:129981-130000 | MS.gene001231:intron | 10.0% |
| !! | TGATTTATAAAAAACAATAT+GGG | - | 42501:130843-130862 | None:intergenic | 10.0% |
| !! | ATCACTATCATTTATTAAAA+TGG | - | 42501:132425-132444 | None:intergenic | 15.0% |
| !!! | TTTTTAGTGAATTAAAGTTA+AGG | + | 42501:129798-129817 | MS.gene001231:intron | 15.0% |
| !! | CAATGTCATTAATTACAAAA+AGG | - | 42501:129775-129794 | None:intergenic | 20.0% |
| !! | GTGTTTAGTATAAAAATCTT+GGG | + | 42501:132167-132186 | MS.gene001231:intron | 20.0% |
| !! | TAAATTCTGTTTACCTATAT+TGG | + | 42501:130964-130983 | MS.gene001231:CDS | 20.0% |
| !! | TCTCAACAAAAATAATATCA+GGG | - | 42501:130025-130044 | None:intergenic | 20.0% |
| !! | TGTGTTTAGTATAAAAATCT+TGG | + | 42501:132166-132185 | MS.gene001231:intron | 20.0% |
| !! | TTCTCAACAAAAATAATATC+AGG | - | 42501:130026-130045 | None:intergenic | 20.0% |
| !!! | ACTGTTAATTGAGTATTTTT+TGG | + | 42501:131430-131449 | MS.gene001231:intron | 20.0% |
| !!! | ATAAAAGTATCTGAGATTTT+AGG | + | 42501:131351-131370 | MS.gene001231:intron | 20.0% |
| !!! | CTGTTAATTGAGTATTTTTT+GGG | + | 42501:131431-131450 | MS.gene001231:intron | 20.0% |
| !!! | TTTCTGTGTAATTTTTGAAA+TGG | + | 42501:131224-131243 | MS.gene001231:intron | 20.0% |
| ! | AACAAACATAACATGTATAG+AGG | - | 42501:130795-130814 | None:intergenic | 25.0% |
| ! | AATAAAGAGAAAAGTGACAA+AGG | - | 42501:131189-131208 | None:intergenic | 25.0% |
| ! | ACAAACATAACATGTATAGA+GGG | - | 42501:130794-130813 | None:intergenic | 25.0% |
| ! | GTCAAATAAACTTTATAAGC+CGG | + | 42501:129473-129492 | MS.gene001231:CDS | 25.0% |
| ! | TATCATTGAATTTATCAGCA+AGG | - | 42501:130628-130647 | None:intergenic | 25.0% |
| ! | TGAGTTAAAATATTTGGTTG+TGG | + | 42501:129987-130006 | MS.gene001231:intron | 25.0% |
| ! | TGTTTCATATGAGTAATTAG+AGG | + | 42501:132135-132154 | MS.gene001231:intron | 25.0% |
| !! | AGAAACTTTTGCAGAATATA+CGG | + | 42501:131589-131608 | MS.gene001231:intron | 25.0% |
| !! | CATGTACTTACATTATTTTC+AGG | + | 42501:130861-130880 | MS.gene001231:intron | 25.0% |
| !! | CTGAATGTTGACATTTTTAT+TGG | + | 42501:132475-132494 | MS.gene001231:intron | 25.0% |
| !! | TGTATTAGTTAGTATTGAAC+TGG | + | 42501:131136-131155 | MS.gene001231:intron | 25.0% |
| !! | TTTTGTTGAGAAAGATTCAT+GGG | + | 42501:130034-130053 | MS.gene001231:CDS | 25.0% |
| !! | TTTTTGTTGAGAAAGATTCA+TGG | + | 42501:130033-130052 | MS.gene001231:CDS | 25.0% |
| !!! | AGTTTTTTCTAAATCAGCAA+AGG | - | 42501:130572-130591 | None:intergenic | 25.0% |
| !!! | ATGAAGAGTGTTTAAAATGT+GGG | + | 42501:131017-131036 | MS.gene001231:CDS | 25.0% |
| !!! | GCACGAACTTTTTTATATAT+AGG | - | 42501:131410-131429 | None:intergenic | 25.0% |
| !!! | TATGAAGAGTGTTTAAAATG+TGG | + | 42501:131016-131035 | MS.gene001231:CDS | 25.0% |
| !!! | TGATGTTTCTTTTTTATGTC+TGG | + | 42501:132319-132338 | MS.gene001231:intron | 25.0% |
| !!! | TTGTTTTGTATGAGCATATA+TGG | + | 42501:131104-131123 | MS.gene001231:intron | 25.0% |
| AATAAAAACAAGCAGAGGAA+TGG | - | 42501:131846-131865 | None:intergenic | 30.0% | |
| AGCTGAAACATAGTGAAATA+AGG | - | 42501:132089-132108 | None:intergenic | 30.0% | |
| ATTCAAATGCAAGAAATGGA+CGG | + | 42501:130478-130497 | MS.gene001231:CDS | 30.0% | |
| CAACAAAAATAATATCAGGG+TGG | - | 42501:130022-130041 | None:intergenic | 30.0% | |
| GAAAGAGATTTAGTGTTAGT+TGG | + | 42501:131497-131516 | MS.gene001231:intron | 30.0% | |
| GGATATTCAAATGCAAGAAA+TGG | + | 42501:130474-130493 | MS.gene001231:CDS | 30.0% | |
| TACTAATATTCGTAGCAAGA+AGG | - | 42501:130137-130156 | None:intergenic | 30.0% | |
| TAGAGTGGTTATAAAGACAA+TGG | + | 42501:131703-131722 | MS.gene001231:intron | 30.0% | |
| TATAAAGACAATGGAAAGAG+AGG | + | 42501:131712-131731 | MS.gene001231:intron | 30.0% | |
| TATGAGTAATTAGAGGATGA+AGG | + | 42501:132142-132161 | MS.gene001231:intron | 30.0% | |
| TGAACTCTTCTTCTTATCTA+TGG | - | 42501:131461-131480 | None:intergenic | 30.0% | |
| TTAAAATATTTGGTTGTGGC+AGG | + | 42501:129991-130010 | MS.gene001231:intron | 30.0% | |
| ! | ATTAGTTAGTATTGAACTGG+TGG | + | 42501:131139-131158 | MS.gene001231:intron | 30.0% |
| ! | TTATGTCTCAAAACCTTTTG+AGG | + | 42501:131048-131067 | MS.gene001231:CDS | 30.0% |
| !! | ACTTTTAACCGACTTTTTGA+TGG | + | 42501:132524-132543 | MS.gene001231:CDS | 30.0% |
| !! | ATTTCTCATTTTTGCAATGC+AGG | + | 42501:131891-131910 | MS.gene001231:intron | 30.0% |
| !! | ATTTTAGTGGTTGATGTCAA+TGG | + | 42501:130339-130358 | MS.gene001231:intron | 30.0% |
| !! | TTGACATTTTTATTGGTGTC+AGG | + | 42501:132482-132501 | MS.gene001231:intron | 30.0% |
| !!! | TAGTCTAAGATGTTTTGGTT+TGG | + | 42501:131250-131269 | MS.gene001231:intron | 30.0% |
| !!! | TGACATTTTTATTGGTGTCA+GGG | + | 42501:132483-132502 | MS.gene001231:intron | 30.0% |
| AAAATCCGCGGTAAATGAAA+AGG | - | 42501:129515-129534 | None:intergenic | 35.0% | |
| AACACTCTTCATATGTAGCA+TGG | - | 42501:131009-131028 | None:intergenic | 35.0% | |
| ACAGTCCTTGATTTCTTGAA+GGG | + | 42501:132449-132468 | MS.gene001231:intron | 35.0% | |
| ACATCGTATCAATAGACTCA+AGG | - | 42501:131794-131813 | None:intergenic | 35.0% | |
| AGATACCATTTGAAGAGACT+TGG | + | 42501:129658-129677 | MS.gene001231:CDS | 35.0% | |
| AGTTACCCTTCAAGAAATCA+AGG | - | 42501:132457-132476 | None:intergenic | 35.0% | |
| ATTAAAAACTTACCCTGTGC+TGG | - | 42501:129749-129768 | None:intergenic | 35.0% | |
| CACTGTATCACTAAAACATG+CGG | - | 42501:130184-130203 | None:intergenic | 35.0% | |
| CCACAAATAAAAACAAGCAG+AGG | - | 42501:131851-131870 | None:intergenic | 35.0% | |
| CGTAAATATTCCAAAATCCG+CGG | - | 42501:129527-129546 | None:intergenic | 35.0% | |
| GAAGAAGAGTTCAGAGAAAT+AGG | + | 42501:131468-131487 | MS.gene001231:intron | 35.0% | |
| GATACCATTTGAAGAGACTT+GGG | + | 42501:129659-129678 | MS.gene001231:CDS | 35.0% | |
| GGGAGCTTAAATTTGTAAAC+AGG | - | 42501:132018-132037 | None:intergenic | 35.0% | |
| GTTAACAACTCTTTGTGCAT+AGG | - | 42501:131654-131673 | None:intergenic | 35.0% | |
| GTTGAAGAAAACGTTGTACT+TGG | + | 42501:132278-132297 | MS.gene001231:intron | 35.0% | |
| GTTTCTTTGTGTGGGAAAAA+TGG | + | 42501:129718-129737 | MS.gene001231:CDS | 35.0% | |
| TAATGAGCTCTTCTGTTGTT+GGG | - | 42501:132047-132066 | None:intergenic | 35.0% | |
| TACAGTCCTTGATTTCTTGA+AGG | + | 42501:132448-132467 | MS.gene001231:intron | 35.0% | |
| TACGAAGAATCCAATAACTG+AGG | + | 42501:129543-129562 | MS.gene001231:CDS | 35.0% | |
| TGAACAATTCCTTCCTCAAA+AGG | - | 42501:131064-131083 | None:intergenic | 35.0% | |
| TGCACAAAGAGTTGTTAACT+CGG | + | 42501:131655-131674 | MS.gene001231:intron | 35.0% | |
| TGCTGTAATGTTACTGTACT+TGG | + | 42501:131292-131311 | MS.gene001231:intron | 35.0% | |
| TTAATGAGCTCTTCTGTTGT+TGG | - | 42501:132048-132067 | None:intergenic | 35.0% | |
| TTACGTGCATTCAATTTACG+TGG | - | 42501:130652-130671 | None:intergenic | 35.0% | |
| TTCAAATGCAAGAAATGGAC+GGG | + | 42501:130479-130498 | MS.gene001231:CDS | 35.0% | |
| ! | AAATTTTCATTCCGCACAGA+AGG | - | 42501:130323-130342 | None:intergenic | 35.0% |
| ! | AACACTAATAGTGGCATTGA+CGG | - | 42501:132235-132254 | None:intergenic | 35.0% |
| ! | AAGTACCTTTTCATTTACCG+CGG | + | 42501:129507-129526 | MS.gene001231:CDS | 35.0% |
| ! | AGAGTGTTTAAAATGTGGGA+TGG | + | 42501:131021-131040 | MS.gene001231:CDS | 35.0% |
| ! | CATCTAAAGTCACACATGAT+CGG | + | 42501:129843-129862 | MS.gene001231:intron | 35.0% |
| ! | GTGCGGAATGAAAATTTTAG+TGG | + | 42501:130326-130345 | MS.gene001231:intron | 35.0% |
| ! | TCTCAGATACTTTTATCTGC+TGG | - | 42501:131347-131366 | None:intergenic | 35.0% |
| ! | TGTGTCGATAACACTAATAG+TGG | - | 42501:132244-132263 | None:intergenic | 35.0% |
| ! | TGTTTAAAATGTGGGATGGA+TGG | + | 42501:131025-131044 | MS.gene001231:CDS | 35.0% |
| ! | TTGCATTTGTTCTTGTTGTG+TGG | + | 42501:129942-129961 | MS.gene001231:intron | 35.0% |
| ! | TTTTCATTTACCGCGGATTT+TGG | + | 42501:129514-129533 | MS.gene001231:CDS | 35.0% |
| !! | AATAAGGCTGTTTCTTTGTG+TGG | + | 42501:129709-129728 | MS.gene001231:CDS | 35.0% |
| !! | AGTGTTAGTTGGTGTTGTAA+TGG | + | 42501:131508-131527 | MS.gene001231:intron | 35.0% |
| !! | ATAAGGCTGTTTCTTTGTGT+GGG | + | 42501:129710-129729 | MS.gene001231:CDS | 35.0% |
| !! | CAAAGAAACAGCCTTATTGA+TGG | - | 42501:129707-129726 | None:intergenic | 35.0% |
| !! | CTTGTAACTTTGAAGCCAAA+GGG | - | 42501:131571-131590 | None:intergenic | 35.0% |
| !! | GGTCTTAGTCTAAGATGTTT+TGG | + | 42501:131245-131264 | MS.gene001231:intron | 35.0% |
| !! | GTGTTAGTTGGTGTTGTAAT+GGG | + | 42501:131509-131528 | MS.gene001231:intron | 35.0% |
| !! | TCTTGTAACTTTGAAGCCAA+AGG | - | 42501:131572-131591 | None:intergenic | 35.0% |
| !! | TTAAACCCTCTAAAACTGGA+TGG | - | 42501:129595-129614 | None:intergenic | 35.0% |
| !! | TTTTGAGGAAGGAATTGTTC+AGG | + | 42501:131063-131082 | MS.gene001231:CDS | 35.0% |
| !!! | ATCTACCATCCAGTTTTAGA+GGG | + | 42501:129587-129606 | MS.gene001231:CDS | 35.0% |
| !!! | CCTCTGCTTGTTTTTATTTG+TGG | + | 42501:131848-131867 | MS.gene001231:intron | 35.0% |
| !!! | CTGCTTGTTTTTATTTGTGG+AGG | + | 42501:131851-131870 | MS.gene001231:intron | 35.0% |
| AAGCAAGCATCAAACTTGTG+AGG | - | 42501:130451-130470 | None:intergenic | 40.0% | |
| AAGTGCCTAGCTGAACTAAT+GGG | + | 42501:129448-129467 | MS.gene001231:CDS | 40.0% | |
| AATGCGGAGTTTAGCACATA+CGG | + | 42501:132551-132570 | MS.gene001231:CDS | 40.0% | |
| ACCTTCTTCACCTCAGTTAT+TGG | - | 42501:129556-129575 | None:intergenic | 40.0% | |
| ACTGATACTCAAACCAATGC+CGG | - | 42501:129428-129447 | None:intergenic | 40.0% | |
| AGAAGACAATGCAAACTGCA+GGG | - | 42501:132389-132408 | None:intergenic | 40.0% | |
| AGCAAGCATCAAACTTGTGA+GGG | - | 42501:130450-130469 | None:intergenic | 40.0% | |
| AGCTCATTAAAGTGACTGCA+GGG | + | 42501:132058-132077 | MS.gene001231:intron | 40.0% | |
| CAAACTGAAGTTGAACCATC+AGG | - | 42501:130297-130316 | None:intergenic | 40.0% | |
| CAAGTTTGATGCTTGCTTCA+AGG | + | 42501:130453-130472 | MS.gene001231:CDS | 40.0% | |
| CATTCTGGCCATCAAAAAGT+CGG | - | 42501:132535-132554 | None:intergenic | 40.0% | |
| CGAATGGTGAATGTAGTGAA+AGG | + | 42501:130936-130955 | MS.gene001231:CDS | 40.0% | |
| GAGAAAGATTCATGGGTTTG+TGG | + | 42501:130041-130060 | MS.gene001231:CDS | 40.0% | |
| GAGAACCCAACAACCTAAAA+GGG | - | 42501:131969-131988 | None:intergenic | 40.0% | |
| GAGTCTATTGATACGATGTC+TGG | + | 42501:131795-131814 | MS.gene001231:intron | 40.0% | |
| GTATCCCAAGTCTCTTCAAA+TGG | - | 42501:129666-129685 | None:intergenic | 40.0% | |
| GTTTCCTGAGCAAATATGAC+CGG | - | 42501:131764-131783 | None:intergenic | 40.0% | |
| TAAGTGCCTAGCTGAACTAA+TGG | + | 42501:129447-129466 | MS.gene001231:CDS | 40.0% | |
| TATTGATACGATGTCTGGAG+AGG | + | 42501:131800-131819 | MS.gene001231:intron | 40.0% | |
| TCCAATAACTGAGGTGAAGA+AGG | + | 42501:129552-129571 | MS.gene001231:CDS | 40.0% | |
| TCTAGAAACTATGGTGGTAC+CGG | + | 42501:129406-129425 | MS.gene001231:CDS | 40.0% | |
| TGAGAACCCAACAACCTAAA+AGG | - | 42501:131970-131989 | None:intergenic | 40.0% | |
| TTAAAGCCGTTGTGGTTGAT+GGG | + | 42501:129611-129630 | MS.gene001231:CDS | 40.0% | |
| TTGAAGCAACTCGTCGAATT+CGG | + | 42501:130885-130904 | MS.gene001231:CDS | 40.0% | |
| TTGTTAACTCGGAAAGAGAG+CGG | + | 42501:131666-131685 | MS.gene001231:intron | 40.0% | |
| TTGTTGGGTTCTCATCATCT+CGG | + | 42501:131976-131995 | MS.gene001231:intron | 40.0% | |
| ! | AACAACCTAAAAGGGCTAGT+CGG | - | 42501:131961-131980 | None:intergenic | 40.0% |
| ! | AATGCACGTAACTTGCATGT+TGG | + | 42501:130661-130680 | MS.gene001231:intron | 40.0% |
| ! | AGCTCGACTTCTAGAAACTA+TGG | + | 42501:129397-129416 | MS.gene001231:CDS | 40.0% |
| ! | ATCCGCTCCAAAGTTTTTCA+AGG | - | 42501:130380-130399 | None:intergenic | 40.0% |
| ! | ATGGATTACATCTGCTGTCA+TGG | - | 42501:130990-131009 | None:intergenic | 40.0% |
| ! | CTTTTGCAGAATATACGGCT+AGG | + | 42501:131594-131613 | MS.gene001231:intron | 40.0% |
| ! | GAGCTCTCAGTATGTTTTCT+CGG | - | 42501:131921-131940 | None:intergenic | 40.0% |
| ! | TCGACTTCTAGAAACTATGG+TGG | + | 42501:129400-129419 | MS.gene001231:CDS | 40.0% |
| ! | TTTAAAGCCGTTGTGGTTGA+TGG | + | 42501:129610-129629 | MS.gene001231:CDS | 40.0% |
| !! | ACTTTTTGATGGCCAGAATG+CGG | + | 42501:132535-132554 | MS.gene001231:CDS | 40.0% |
| !! | GAAAAGGTACTTCCAATCTG+CGG | - | 42501:129499-129518 | None:intergenic | 40.0% |
| !! | GATCTACCATCCAGTTTTAG+AGG | + | 42501:129586-129605 | MS.gene001231:CDS | 40.0% |
| !! | GGCTTTAAACCCTCTAAAAC+TGG | - | 42501:129599-129618 | None:intergenic | 40.0% |
| !! | GTCTCAAAACCTTTTGAGGA+AGG | + | 42501:131052-131071 | MS.gene001231:CDS | 40.0% |
| !!! | ACTAGCCCTTTTAGGTTGTT+GGG | + | 42501:131961-131980 | MS.gene001231:intron | 40.0% |
| AAAAATGGTGCTTCCAGCAC+AGG | + | 42501:129733-129752 | MS.gene001231:CDS | 45.0% | |
| AAAATGGTGCTTCCAGCACA+GGG | + | 42501:129734-129753 | MS.gene001231:CDS | 45.0% | |
| AAAGAGAGGCTTCACAGGTT+AGG | + | 42501:131726-131745 | MS.gene001231:intron | 45.0% | |
| AACATACTGAGAGCTCCTAC+TGG | + | 42501:131925-131944 | MS.gene001231:intron | 45.0% | |
| AAGAGAGGCTTCACAGGTTA+GGG | + | 42501:131727-131746 | MS.gene001231:intron | 45.0% | |
| AATGGAAAGAGAGGCTTCAC+AGG | + | 42501:131721-131740 | MS.gene001231:intron | 45.0% | |
| ACATACTGAGAGCTCCTACT+GGG | + | 42501:131926-131945 | MS.gene001231:intron | 45.0% | |
| AGATTCATGGGTTTGTGGAG+AGG | + | 42501:130046-130065 | MS.gene001231:CDS | 45.0% | |
| AGCTCTTCTGTTGTTGGGTT+GGG | - | 42501:132042-132061 | None:intergenic | 45.0% | |
| AGGTTTCCCATCAACCACAA+CGG | - | 42501:129620-129639 | None:intergenic | 45.0% | |
| AGTCGCAAACGCCATCAATA+AGG | + | 42501:129693-129712 | MS.gene001231:CDS | 45.0% | |
| ATGCGGAGTTTAGCACATAC+GGG | + | 42501:132552-132571 | MS.gene001231:CDS | 45.0% | |
| ATGTCAATGGAAGTGACTGC+AGG | + | 42501:130352-130371 | MS.gene001231:CDS | 45.0% | |
| ATGTGCTAAACTCCGCATTC+TGG | - | 42501:132550-132569 | None:intergenic | 45.0% | |
| CCACTGAGAACTAGTATGGT+GGG | + | 42501:130213-130232 | MS.gene001231:CDS | 45.0% | |
| GAAGACAATGCAAACTGCAG+GGG | - | 42501:132388-132407 | None:intergenic | 45.0% | |
| GAAGCCACTGAGAACTAGTA+TGG | + | 42501:130209-130228 | MS.gene001231:CDS | 45.0% | |
| GAGAAGACAATGCAAACTGC+AGG | - | 42501:132390-132409 | None:intergenic | 45.0% | |
| GAGCTATCTGCCTTCACAAA+AGG | - | 42501:129382-129401 | None:intergenic | 45.0% | |
| GAGCTCATTAAAGTGACTGC+AGG | + | 42501:132057-132076 | MS.gene001231:intron | 45.0% | |
| GTAGCAAGAAGGATCATTCG+AGG | - | 42501:130126-130145 | None:intergenic | 45.0% | |
| GTTTGAGAAGCAGCATAGAG+TGG | + | 42501:131688-131707 | MS.gene001231:intron | 45.0% | |
| TCTGCTGTCATGGCCAATAT+AGG | - | 42501:130980-130999 | None:intergenic | 45.0% | |
| TGAAGCAACTCGTCGAATTC+GGG | + | 42501:130886-130905 | MS.gene001231:CDS | 45.0% | |
| TGTCAGGGAAACATTGCTGA+AGG | + | 42501:132498-132517 | MS.gene001231:intron | 45.0% | |
| ! | AGCTTGCCTTCAGCAAGTTT+TGG | + | 42501:130236-130255 | MS.gene001231:CDS | 45.0% |
| ! | CGCCTTGAAAAACTTTGGAG+CGG | + | 42501:130375-130394 | MS.gene001231:CDS | 45.0% |
| ! | GCTTGCCTTCAGCAAGTTTT+GGG | + | 42501:130237-130256 | MS.gene001231:CDS | 45.0% |
| ! | TAGAGGGTTTAAAGCCGTTG+TGG | + | 42501:129603-129622 | MS.gene001231:CDS | 45.0% |
| ! | TCAGTTTGAAGCCTTCTGTG+CGG | + | 42501:130309-130328 | MS.gene001231:intron | 45.0% |
| !! | CTGTTCCCAAAACTTGCTGA+AGG | - | 42501:130245-130264 | None:intergenic | 45.0% |
| !! | GTAACTTTGAAGCCAAAGGG+TGG | - | 42501:131568-131587 | None:intergenic | 45.0% |
| !! | TTGTTCCGACTAGCCCTTTT+AGG | + | 42501:131953-131972 | MS.gene001231:intron | 45.0% |
| !!! | CTTCAGCAAGTTTTGGGAAC+AGG | + | 42501:130243-130262 | MS.gene001231:CDS | 45.0% |
| !!! | GACTAGCCCTTTTAGGTTGT+TGG | + | 42501:131960-131979 | MS.gene001231:intron | 45.0% |
| AACAGGCAAGAAGAGACAGC+CGG | + | 42501:130260-130279 | MS.gene001231:CDS | 50.0% | |
| AACTCGTCGAATTCGGGAGA+TGG | + | 42501:130892-130911 | MS.gene001231:CDS | 50.0% | |
| AATTCGGGAGATGGAGAGGA+CGG | + | 42501:130901-130920 | MS.gene001231:CDS | 50.0% | |
| AGTTTAGCACATACGGGGAC+TGG | + | 42501:132558-132577 | MS.gene001231:CDS | 50.0% | |
| GAGCTCTTCTGTTGTTGGGT+TGG | - | 42501:132043-132062 | None:intergenic | 50.0% | |
| GATGTGAAGTGTGCAGACAG+CGG | + | 42501:130397-130416 | MS.gene001231:CDS | 50.0% | |
| GCAAAATCAGCACCACCCTT+TGG | + | 42501:131553-131572 | MS.gene001231:intron | 50.0% | |
| GCAGGCGCCTTGAAAAACTT+TGG | + | 42501:130370-130389 | MS.gene001231:CDS | 50.0% | |
| GCCACTGAGAACTAGTATGG+TGG | + | 42501:130212-130231 | MS.gene001231:CDS | 50.0% | |
| GGTTAGGGATGAGTATGCAC+CGG | + | 42501:131742-131761 | MS.gene001231:intron | 50.0% | |
| GTCGGAACAAACTTCCCAGT+AGG | - | 42501:131943-131962 | None:intergenic | 50.0% | |
| TCATGGGTTTGTGGAGAGGA+CGG | + | 42501:130050-130069 | MS.gene001231:CDS | 50.0% | |
| TGCCTAGCTGAACTAATGGG+CGG | + | 42501:129451-129470 | MS.gene001231:CDS | 50.0% | |
| TGCGGAGTTTAGCACATACG+GGG | + | 42501:132553-132572 | MS.gene001231:CDS | 50.0% | |
| TGCGGCAACTGGAAACAGAA+CGG | + | 42501:130084-130103 | MS.gene001231:intron | 50.0% | |
| TTTATAAGCCGGCCGCAGAT+TGG | + | 42501:129484-129503 | MS.gene001231:CDS | 50.0% | |
| ! | CCATCAGGCATCTCTTTTCC+CGG | - | 42501:130282-130301 | None:intergenic | 50.0% |
| ! | CCCACCATACTAGTTCTCAG+TGG | - | 42501:130216-130235 | None:intergenic | 50.0% |
| ! | CTAGTCACAGCAGCTCTAAC+AGG | - | 42501:129640-129659 | None:intergenic | 50.0% |
| ! | TGCACCGGTCATATTTGCTC+AGG | + | 42501:131757-131776 | MS.gene001231:intron | 50.0% |
| !! | AACTATGGTGGTACCGGCAT+TGG | + | 42501:129412-129431 | MS.gene001231:CDS | 50.0% |
| !! | CTTCTGTTGTTGGGTTGGGA+GGG | - | 42501:132038-132057 | None:intergenic | 50.0% |
| !! | TCTTCTGTTGTTGGGTTGGG+AGG | - | 42501:132039-132058 | None:intergenic | 50.0% |
| ACAGGCAAGAAGAGACAGCC+GGG | + | 42501:130261-130280 | MS.gene001231:CDS | 55.0% | |
| ACGGCGAATGAGGAGACGAA+TGG | + | 42501:130920-130939 | MS.gene001231:CDS | 55.0% | |
| AGGACGGGATCTTCAGTGTG+CGG | + | 42501:130066-130085 | MS.gene001231:intron | 55.0% | |
| AGGTACTTCCAATCTGCGGC+CGG | - | 42501:129495-129514 | None:intergenic | 55.0% | |
| CATGGGTTTGTGGAGAGGAC+GGG | + | 42501:130051-130070 | MS.gene001231:CDS | 55.0% | |
| CCGGGAAAAGAGATGCCTGA+TGG | + | 42501:130279-130298 | MS.gene001231:CDS | 55.0% | |
| CGGCTAGGACTGCTTTCGAA+AGG | + | 42501:131609-131628 | MS.gene001231:intron | 55.0% | |
| GACCGCCCATTAGTTCAGCT+AGG | - | 42501:129456-129475 | None:intergenic | 55.0% | |
| GATCTTCAGTGTGCGGCAAC+TGG | + | 42501:130073-130092 | MS.gene001231:intron | 55.0% | |
| GGGTTCTCATCATCTCGGTG+TGG | + | 42501:131981-132000 | MS.gene001231:intron | 55.0% | |
| GTCGAATTCGGGAGATGGAG+AGG | + | 42501:130897-130916 | MS.gene001231:CDS | 55.0% | |
| TGTGCATAGGCCACTCCACT+CGG | - | 42501:131641-131660 | None:intergenic | 55.0% | |
| !! | ATACGGGGACTGGCTTCTAC+GGG | + | 42501:132568-132587 | MS.gene001231:CDS | 55.0% |
| !! | CATACGGGGACTGGCTTCTA+CGG | + | 42501:132567-132586 | MS.gene001231:CDS | 55.0% |
| GATGGAGAGGACGGCGAATG+AGG | + | 42501:130910-130929 | MS.gene001231:CDS | 60.0% | |
| TAGGCCACTCCACTCGGTAG+CGG | - | 42501:131635-131654 | None:intergenic | 60.0% | |
| TTCGAAAGGCCGCTACCGAG+TGG | + | 42501:131623-131642 | MS.gene001231:intron | 60.0% | |
| AAGGCCGCTACCGAGTGGAG+TGG | + | 42501:131628-131647 | MS.gene001231:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 42501 | gene | 129376 | 132593 | 129376 | ID=MS.gene001231 |
| 42501 | mRNA | 129376 | 132593 | 129376 | ID=MS.gene001231.t1;Parent=MS.gene001231 |
| 42501 | exon | 129376 | 129755 | 129376 | ID=MS.gene001231.t1.exon1;Parent=MS.gene001231.t1 |
| 42501 | CDS | 129376 | 129755 | 129376 | ID=cds.MS.gene001231.t1;Parent=MS.gene001231.t1 |
| 42501 | exon | 130013 | 130082 | 130013 | ID=MS.gene001231.t1.exon2;Parent=MS.gene001231.t1 |
| 42501 | CDS | 130013 | 130082 | 130013 | ID=cds.MS.gene001231.t1;Parent=MS.gene001231.t1 |
| 42501 | exon | 130120 | 130311 | 130120 | ID=MS.gene001231.t1.exon3;Parent=MS.gene001231.t1 |
| 42501 | CDS | 130120 | 130311 | 130120 | ID=cds.MS.gene001231.t1;Parent=MS.gene001231.t1 |
| 42501 | exon | 130346 | 130500 | 130346 | ID=MS.gene001231.t1.exon4;Parent=MS.gene001231.t1 |
| 42501 | CDS | 130346 | 130500 | 130346 | ID=cds.MS.gene001231.t1;Parent=MS.gene001231.t1 |
| 42501 | exon | 130883 | 131084 | 130883 | ID=MS.gene001231.t1.exon5;Parent=MS.gene001231.t1 |
| 42501 | CDS | 130883 | 131084 | 130883 | ID=cds.MS.gene001231.t1;Parent=MS.gene001231.t1 |
| 42501 | exon | 132504 | 132593 | 132504 | ID=MS.gene001231.t1.exon6;Parent=MS.gene001231.t1 |
| 42501 | CDS | 132504 | 132593 | 132504 | ID=cds.MS.gene001231.t1;Parent=MS.gene001231.t1 |
| Gene Sequence |
| Protein sequence |
