Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001261.t1 | XP_003631014.2 | 84.4 | 358 | 27 | 2 | 1 | 329 | 626 | 983 | 1.80E-164 | 589 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001261.t1 | Q9C5U0 | 56.7 | 365 | 112 | 6 | 1 | 329 | 706 | 1060 | 2.7e-100 | 367.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001261.t1 | G7LCC4 | 84.4 | 358 | 27 | 2 | 1 | 329 | 383 | 740 | 1.3e-164 | 589.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene001261.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001261.t1 | MTR_8g106150 | 84.358 | 358 | 27 | 2 | 1 | 329 | 626 | 983 | 0.0 | 615 |
| MS.gene001261.t1 | MTR_8g106150 | 94.118 | 51 | 3 | 0 | 375 | 425 | 116 | 166 | 9.26e-22 | 98.6 |
| MS.gene001261.t1 | MTR_8g106150 | 84.358 | 358 | 27 | 2 | 1 | 329 | 383 | 740 | 0.0 | 612 |
| MS.gene001261.t1 | MTR_5g097410 | 44.568 | 359 | 166 | 6 | 2 | 329 | 845 | 1201 | 1.56e-84 | 281 |
| MS.gene001261.t1 | MTR_8g080770 | 41.622 | 370 | 167 | 9 | 2 | 340 | 505 | 856 | 1.81e-81 | 268 |
| MS.gene001261.t1 | MTR_8g080770 | 66.667 | 48 | 16 | 0 | 374 | 421 | 1 | 48 | 4.02e-12 | 68.6 |
| MS.gene001261.t1 | MTR_8g080770 | 41.622 | 370 | 167 | 9 | 2 | 340 | 614 | 965 | 8.88e-81 | 268 |
| MS.gene001261.t1 | MTR_8g080770 | 68.085 | 47 | 15 | 0 | 375 | 421 | 111 | 157 | 6.14e-12 | 68.2 |
| MS.gene001261.t1 | MTR_3g085130 | 42.246 | 374 | 164 | 9 | 2 | 340 | 463 | 819 | 1.43e-79 | 262 |
| MS.gene001261.t1 | MTR_3g085130 | 42.246 | 374 | 164 | 9 | 2 | 340 | 673 | 1029 | 9.18e-78 | 260 |
| MS.gene001261.t1 | MTR_3g085130 | 70.213 | 47 | 14 | 0 | 375 | 421 | 166 | 212 | 5.35e-12 | 68.6 |
| MS.gene001261.t1 | MTR_5g044100 | 50.000 | 132 | 54 | 4 | 147 | 278 | 104 | 223 | 4.88e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001261.t1 | AT2G01830 | 56.712 | 365 | 112 | 6 | 1 | 329 | 683 | 1037 | 3.18e-124 | 385 |
| MS.gene001261.t1 | AT2G01830 | 59.459 | 74 | 30 | 0 | 349 | 422 | 155 | 228 | 4.64e-17 | 84.3 |
| MS.gene001261.t1 | AT2G01830 | 56.712 | 365 | 112 | 6 | 1 | 329 | 683 | 1037 | 3.18e-124 | 385 |
| MS.gene001261.t1 | AT2G01830 | 59.459 | 74 | 30 | 0 | 349 | 422 | 155 | 228 | 4.64e-17 | 84.3 |
| MS.gene001261.t1 | AT2G01830 | 56.712 | 365 | 112 | 6 | 1 | 329 | 683 | 1037 | 3.18e-124 | 385 |
| MS.gene001261.t1 | AT2G01830 | 59.459 | 74 | 30 | 0 | 349 | 422 | 155 | 228 | 4.64e-17 | 84.3 |
| MS.gene001261.t1 | AT2G01830 | 56.712 | 365 | 112 | 6 | 1 | 329 | 683 | 1037 | 3.18e-124 | 385 |
| MS.gene001261.t1 | AT2G01830 | 59.459 | 74 | 30 | 0 | 349 | 422 | 155 | 228 | 4.64e-17 | 84.3 |
| MS.gene001261.t1 | AT2G01830 | 56.712 | 365 | 112 | 6 | 1 | 329 | 695 | 1049 | 4.75e-124 | 385 |
| MS.gene001261.t1 | AT2G01830 | 59.459 | 74 | 30 | 0 | 349 | 422 | 167 | 240 | 4.45e-17 | 84.3 |
| MS.gene001261.t1 | AT2G01830 | 56.712 | 365 | 112 | 6 | 1 | 329 | 706 | 1060 | 5.93e-124 | 385 |
| MS.gene001261.t1 | AT2G01830 | 59.459 | 74 | 30 | 0 | 349 | 422 | 178 | 251 | 4.16e-17 | 84.3 |
| MS.gene001261.t1 | AT5G35750 | 47.658 | 363 | 147 | 9 | 2 | 332 | 814 | 1165 | 7.26e-93 | 303 |
| MS.gene001261.t1 | AT5G35750 | 46.078 | 102 | 48 | 3 | 329 | 423 | 255 | 356 | 1.84e-12 | 70.1 |
| MS.gene001261.t1 | AT1G27320 | 44.959 | 367 | 164 | 9 | 2 | 340 | 670 | 1026 | 7.66e-86 | 283 |
| MS.gene001261.t1 | AT1G27320 | 65.217 | 46 | 16 | 0 | 375 | 420 | 169 | 214 | 3.39e-11 | 65.9 |
Find 0 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTAATTTTTTTTTTTTT+TGG | + | 43347:32967-32986 | MS.gene001261:intron | 0.0% |
| !! | ATGATTTATAAAAAACAATA+TGG | - | 43347:33291-33310 | MS.gene001261:intergenic | 10.0% |
| !! | ATTAAATGAGTTAAAATATT+TGG | + | 43347:32428-32447 | MS.gene001261:intron | 10.0% |
| !! | TGATTTATAAAAAACAATAT+GGG | - | 43347:33290-33309 | MS.gene001261:intergenic | 10.0% |
| !!! | TTTTTAGTGAATTAAAGTTA+AGG | + | 43347:32245-32264 | MS.gene001261:intron | 15.0% |
| !! | CAATGTCATTAATTACAAAA+AGG | - | 43347:32222-32241 | MS.gene001261:intergenic | 20.0% |
| !! | TAAATTCTGTTTACCTATAT+TGG | + | 43347:33411-33430 | MS.gene001261:CDS | 20.0% |
| !! | TCTCAACAAAAATAATATCA+GGG | - | 43347:32472-32491 | MS.gene001261:intergenic | 20.0% |
| !! | TTCTCAACAAAAATAATATC+AGG | - | 43347:32473-32492 | MS.gene001261:intergenic | 20.0% |
| !!! | ACTGTTAATTGAGTATTTTT+TGG | + | 43347:33877-33896 | MS.gene001261:intron | 20.0% |
| !!! | ATAAAAGTATCTGAGATTTT+AGG | + | 43347:33798-33817 | MS.gene001261:intron | 20.0% |
| !!! | CTGTTAATTGAGTATTTTTT+GGG | + | 43347:33878-33897 | MS.gene001261:intron | 20.0% |
| !!! | TTTCTGTGTAATTTTTGAAA+TGG | + | 43347:33671-33690 | MS.gene001261:intron | 20.0% |
| ! | AACAAACATAACATGTATAG+AGG | - | 43347:33242-33261 | MS.gene001261:intergenic | 25.0% |
| ! | AATAAAGAGAAAAGTGACAA+AGG | - | 43347:33636-33655 | MS.gene001261:intergenic | 25.0% |
| ! | ACAAACATAACATGTATAGA+GGG | - | 43347:33241-33260 | MS.gene001261:intergenic | 25.0% |
| ! | GTCAAATAAACTTTATAAGC+CGG | + | 43347:31920-31939 | MS.gene001261:CDS | 25.0% |
| ! | TATCATTGAATTTATCAGCA+AGG | - | 43347:33075-33094 | MS.gene001261:intergenic | 25.0% |
| ! | TGAGTTAAAATATTTGGTTG+TGG | + | 43347:32434-32453 | MS.gene001261:intron | 25.0% |
| !! | AGAAACTTTTGCAGAATATA+CGG | + | 43347:34036-34055 | MS.gene001261:CDS | 25.0% |
| !! | CATGTACTTACATTATTTTC+AGG | + | 43347:33308-33327 | MS.gene001261:intron | 25.0% |
| !! | TGTATTAGTTAGTATTGAAC+TGG | + | 43347:33583-33602 | MS.gene001261:intron | 25.0% |
| !! | TTTTGTTGAGAAAGATTCAT+GGG | + | 43347:32481-32500 | MS.gene001261:CDS | 25.0% |
| !! | TTTTTGTTGAGAAAGATTCA+TGG | + | 43347:32480-32499 | MS.gene001261:CDS | 25.0% |
| !!! | AGTTTTTTCTAAATCAGCAA+AGG | - | 43347:33019-33038 | MS.gene001261:intergenic | 25.0% |
| !!! | ATGAAGAGTGTTTAAAATGT+GGG | + | 43347:33464-33483 | MS.gene001261:CDS | 25.0% |
| !!! | GCACGAACTTTTTTATATAT+AGG | - | 43347:33857-33876 | MS.gene001261:intergenic | 25.0% |
| !!! | TATGAAGAGTGTTTAAAATG+TGG | + | 43347:33463-33482 | MS.gene001261:CDS | 25.0% |
| !!! | TTGTTTTGTATGAGCATATA+TGG | + | 43347:33551-33570 | MS.gene001261:intron | 25.0% |
| ATTCAAATGCAAGAAATGGA+CGG | + | 43347:32925-32944 | MS.gene001261:CDS | 30.0% | |
| CAACAAAAATAATATCAGGG+TGG | - | 43347:32469-32488 | MS.gene001261:intergenic | 30.0% | |
| GAAAGAGATTTAGTGTTAGT+TGG | + | 43347:33944-33963 | MS.gene001261:CDS | 30.0% | |
| GGATATTCAAATGCAAGAAA+TGG | + | 43347:32921-32940 | MS.gene001261:CDS | 30.0% | |
| TACTAATATTCGTAGCAAGA+AGG | - | 43347:32584-32603 | MS.gene001261:intergenic | 30.0% | |
| TAGAGTGGTTATAAAGACAA+TGG | + | 43347:34150-34169 | MS.gene001261:CDS | 30.0% | |
| TATAAAGACAATGGAAAGAG+AGG | + | 43347:34159-34178 | MS.gene001261:CDS | 30.0% | |
| TGAACTCTTCTTCTTATCTA+TGG | - | 43347:33908-33927 | MS.gene001261:intergenic | 30.0% | |
| TTAAAATATTTGGTTGTGGC+AGG | + | 43347:32438-32457 | MS.gene001261:intron | 30.0% | |
| ! | ATTAGTTAGTATTGAACTGG+TGG | + | 43347:33586-33605 | MS.gene001261:intron | 30.0% |
| ! | TTATGTCTCAAAACCTTTTG+AGG | + | 43347:33495-33514 | MS.gene001261:CDS | 30.0% |
| !! | ATTTTAGTGGTTGATGTCAA+TGG | + | 43347:32786-32805 | MS.gene001261:intron | 30.0% |
| !!! | TAGTCTAAGATGTTTTGGTT+TGG | + | 43347:33697-33716 | MS.gene001261:intron | 30.0% |
| AAAATCCGCGGTAAATGAAA+AGG | - | 43347:31962-31981 | MS.gene001261:intergenic | 35.0% | |
| AACACTCTTCATATGTAGCA+TGG | - | 43347:33456-33475 | MS.gene001261:intergenic | 35.0% | |
| AGATACCATTTGAAGAGACT+TGG | + | 43347:32105-32124 | MS.gene001261:CDS | 35.0% | |
| ATTAAAAACTTACCCTGTGC+TGG | - | 43347:32196-32215 | MS.gene001261:intergenic | 35.0% | |
| CACTGTATCACTAAAACATG+CGG | - | 43347:32631-32650 | MS.gene001261:intergenic | 35.0% | |
| CGTAAATATTCCAAAATCCG+CGG | - | 43347:31974-31993 | MS.gene001261:intergenic | 35.0% | |
| GAAGAAGAGTTCAGAGAAAT+AGG | + | 43347:33915-33934 | MS.gene001261:CDS | 35.0% | |
| GATACCATTTGAAGAGACTT+GGG | + | 43347:32106-32125 | MS.gene001261:CDS | 35.0% | |
| GTTAACAACTCTTTGTGCAT+AGG | - | 43347:34101-34120 | MS.gene001261:intergenic | 35.0% | |
| GTTTCTTTGTGTGGGAAAAA+TGG | + | 43347:32165-32184 | MS.gene001261:CDS | 35.0% | |
| TACGAAGAATCCAATAACTG+AGG | + | 43347:31990-32009 | MS.gene001261:CDS | 35.0% | |
| TGAACAATTCCTTCCTCAAA+AGG | - | 43347:33511-33530 | MS.gene001261:intergenic | 35.0% | |
| TGCACAAAGAGTTGTTAACT+CGG | + | 43347:34102-34121 | MS.gene001261:CDS | 35.0% | |
| TGCTGTAATGTTACTGTACT+TGG | + | 43347:33739-33758 | MS.gene001261:intron | 35.0% | |
| TTACGTGCATTCAATTTACG+TGG | - | 43347:33099-33118 | MS.gene001261:intergenic | 35.0% | |
| TTCAAATGCAAGAAATGGAC+GGG | + | 43347:32926-32945 | MS.gene001261:CDS | 35.0% | |
| ! | AAATTTTCATTCCGCACAGA+AGG | - | 43347:32770-32789 | MS.gene001261:intergenic | 35.0% |
| ! | AAGTACCTTTTCATTTACCG+CGG | + | 43347:31954-31973 | MS.gene001261:CDS | 35.0% |
| ! | AGAGTGTTTAAAATGTGGGA+TGG | + | 43347:33468-33487 | MS.gene001261:CDS | 35.0% |
| ! | CATCTAAAGTCACACATGAT+CGG | + | 43347:32290-32309 | MS.gene001261:intron | 35.0% |
| ! | GTGCGGAATGAAAATTTTAG+TGG | + | 43347:32773-32792 | MS.gene001261:intron | 35.0% |
| ! | TCTCAGATACTTTTATCTGC+TGG | - | 43347:33794-33813 | MS.gene001261:intergenic | 35.0% |
| ! | TGTTTAAAATGTGGGATGGA+TGG | + | 43347:33472-33491 | MS.gene001261:CDS | 35.0% |
| ! | TTGCATTTGTTCTTGTTGTG+TGG | + | 43347:32389-32408 | MS.gene001261:intron | 35.0% |
| ! | TTTTCATTTACCGCGGATTT+TGG | + | 43347:31961-31980 | MS.gene001261:CDS | 35.0% |
| !! | AATAAGGCTGTTTCTTTGTG+TGG | + | 43347:32156-32175 | MS.gene001261:CDS | 35.0% |
| !! | AGTGTTAGTTGGTGTTGTAA+TGG | + | 43347:33955-33974 | MS.gene001261:CDS | 35.0% |
| !! | ATAAGGCTGTTTCTTTGTGT+GGG | + | 43347:32157-32176 | MS.gene001261:CDS | 35.0% |
| !! | CAAAGAAACAGCCTTATTGA+TGG | - | 43347:32154-32173 | MS.gene001261:intergenic | 35.0% |
| !! | CTTGTAACTTTGAAGCCAAA+GGG | - | 43347:34018-34037 | MS.gene001261:intergenic | 35.0% |
| !! | GGTCTTAGTCTAAGATGTTT+TGG | + | 43347:33692-33711 | MS.gene001261:intron | 35.0% |
| !! | GTGTTAGTTGGTGTTGTAAT+GGG | + | 43347:33956-33975 | MS.gene001261:CDS | 35.0% |
| !! | TCTTGTAACTTTGAAGCCAA+AGG | - | 43347:34019-34038 | MS.gene001261:intergenic | 35.0% |
| !! | TTAAACCCTCTAAAACTGGA+TGG | - | 43347:32042-32061 | MS.gene001261:intergenic | 35.0% |
| !! | TTTTGAGGAAGGAATTGTTC+AGG | + | 43347:33510-33529 | MS.gene001261:CDS | 35.0% |
| !!! | ATCTACCATCCAGTTTTAGA+GGG | + | 43347:32034-32053 | MS.gene001261:CDS | 35.0% |
| AAGCAAGCATCAAACTTGTG+AGG | - | 43347:32898-32917 | MS.gene001261:intergenic | 40.0% | |
| AAGTGCCTAGCTGAACTAAT+GGG | + | 43347:31895-31914 | MS.gene001261:CDS | 40.0% | |
| ACCTTCTTCACCTCAGTTAT+TGG | - | 43347:32003-32022 | MS.gene001261:intergenic | 40.0% | |
| ACTGATACTCAAACCAATGC+CGG | - | 43347:31875-31894 | MS.gene001261:intergenic | 40.0% | |
| AGCAAGCATCAAACTTGTGA+GGG | - | 43347:32897-32916 | MS.gene001261:intergenic | 40.0% | |
| CAAACTGAAGTTGAACCATC+AGG | - | 43347:32744-32763 | MS.gene001261:intergenic | 40.0% | |
| CAAGTTTGATGCTTGCTTCA+AGG | + | 43347:32900-32919 | MS.gene001261:CDS | 40.0% | |
| CGAATGGTGAATGTAGTGAA+AGG | + | 43347:33383-33402 | MS.gene001261:CDS | 40.0% | |
| GAGAAAGATTCATGGGTTTG+TGG | + | 43347:32488-32507 | MS.gene001261:CDS | 40.0% | |
| GTATCCCAAGTCTCTTCAAA+TGG | - | 43347:32113-32132 | MS.gene001261:intergenic | 40.0% | |
| TAAGTGCCTAGCTGAACTAA+TGG | + | 43347:31894-31913 | MS.gene001261:CDS | 40.0% | |
| TCCAATAACTGAGGTGAAGA+AGG | + | 43347:31999-32018 | MS.gene001261:CDS | 40.0% | |
| TCTAGAAACTATGGTGGTAC+CGG | + | 43347:31853-31872 | MS.gene001261:CDS | 40.0% | |
| TTAAAGCCGTTGTGGTTGAT+GGG | + | 43347:32058-32077 | MS.gene001261:CDS | 40.0% | |
| TTGAAGCAACTCGTCGAATT+CGG | + | 43347:33332-33351 | MS.gene001261:CDS | 40.0% | |
| TTGTTAACTCGGAAAGAGAG+CGG | + | 43347:34113-34132 | MS.gene001261:CDS | 40.0% | |
| ! | AATGCACGTAACTTGCATGT+TGG | + | 43347:33108-33127 | MS.gene001261:intron | 40.0% |
| ! | AGCTCGACTTCTAGAAACTA+TGG | + | 43347:31844-31863 | MS.gene001261:CDS | 40.0% |
| ! | ATCCGCTCCAAAGTTTTTCA+AGG | - | 43347:32827-32846 | MS.gene001261:intergenic | 40.0% |
| ! | ATGGATTACATCTGCTGTCA+TGG | - | 43347:33437-33456 | MS.gene001261:intergenic | 40.0% |
| ! | CTTTTGCAGAATATACGGCT+AGG | + | 43347:34041-34060 | MS.gene001261:CDS | 40.0% |
| ! | TCGACTTCTAGAAACTATGG+TGG | + | 43347:31847-31866 | MS.gene001261:CDS | 40.0% |
| ! | TTTAAAGCCGTTGTGGTTGA+TGG | + | 43347:32057-32076 | MS.gene001261:CDS | 40.0% |
| !! | GAAAAGGTACTTCCAATCTG+CGG | - | 43347:31946-31965 | MS.gene001261:intergenic | 40.0% |
| !! | GATCTACCATCCAGTTTTAG+AGG | + | 43347:32033-32052 | MS.gene001261:CDS | 40.0% |
| !! | GGCTTTAAACCCTCTAAAAC+TGG | - | 43347:32046-32065 | MS.gene001261:intergenic | 40.0% |
| !! | GTCTCAAAACCTTTTGAGGA+AGG | + | 43347:33499-33518 | MS.gene001261:CDS | 40.0% |
| AAAAATGGTGCTTCCAGCAC+AGG | + | 43347:32180-32199 | MS.gene001261:CDS | 45.0% | |
| AAAATGGTGCTTCCAGCACA+GGG | + | 43347:32181-32200 | MS.gene001261:CDS | 45.0% | |
| AGATTCATGGGTTTGTGGAG+AGG | + | 43347:32493-32512 | MS.gene001261:CDS | 45.0% | |
| AGGTTTCCCATCAACCACAA+CGG | - | 43347:32067-32086 | MS.gene001261:intergenic | 45.0% | |
| AGTCGCAAACGCCATCAATA+AGG | + | 43347:32140-32159 | MS.gene001261:CDS | 45.0% | |
| ATGTCAATGGAAGTGACTGC+AGG | + | 43347:32799-32818 | MS.gene001261:CDS | 45.0% | |
| CCACTGAGAACTAGTATGGT+GGG | + | 43347:32660-32679 | MS.gene001261:CDS | 45.0% | |
| GAAGCCACTGAGAACTAGTA+TGG | + | 43347:32656-32675 | MS.gene001261:CDS | 45.0% | |
| GAGCTATCTGCCTTCACAAA+AGG | - | 43347:31829-31848 | MS.gene001261:intergenic | 45.0% | |
| GTAGCAAGAAGGATCATTCG+AGG | - | 43347:32573-32592 | MS.gene001261:intergenic | 45.0% | |
| GTTTGAGAAGCAGCATAGAG+TGG | + | 43347:34135-34154 | MS.gene001261:CDS | 45.0% | |
| TCTGCTGTCATGGCCAATAT+AGG | - | 43347:33427-33446 | MS.gene001261:intergenic | 45.0% | |
| TGAAGCAACTCGTCGAATTC+GGG | + | 43347:33333-33352 | MS.gene001261:CDS | 45.0% | |
| ! | AGCTTGCCTTCAGCAAGTTT+TGG | + | 43347:32683-32702 | MS.gene001261:CDS | 45.0% |
| ! | CGCCTTGAAAAACTTTGGAG+CGG | + | 43347:32822-32841 | MS.gene001261:CDS | 45.0% |
| ! | GCTTGCCTTCAGCAAGTTTT+GGG | + | 43347:32684-32703 | MS.gene001261:CDS | 45.0% |
| ! | TAGAGGGTTTAAAGCCGTTG+TGG | + | 43347:32050-32069 | MS.gene001261:CDS | 45.0% |
| ! | TCAGTTTGAAGCCTTCTGTG+CGG | + | 43347:32756-32775 | MS.gene001261:intron | 45.0% |
| !! | CTGTTCCCAAAACTTGCTGA+AGG | - | 43347:32692-32711 | MS.gene001261:intergenic | 45.0% |
| !! | GTAACTTTGAAGCCAAAGGG+TGG | - | 43347:34015-34034 | MS.gene001261:intergenic | 45.0% |
| !!! | CTTCAGCAAGTTTTGGGAAC+AGG | + | 43347:32690-32709 | MS.gene001261:CDS | 45.0% |
| AACAGGCAAGAAGAGACAGC+CGG | + | 43347:32707-32726 | MS.gene001261:CDS | 50.0% | |
| AACTCGTCGAATTCGGGAGA+TGG | + | 43347:33339-33358 | MS.gene001261:CDS | 50.0% | |
| AATTCGGGAGATGGAGAGGA+CGG | + | 43347:33348-33367 | MS.gene001261:CDS | 50.0% | |
| GATGTGAAGTGTGCAGACAG+CGG | + | 43347:32844-32863 | MS.gene001261:CDS | 50.0% | |
| GCAAAATCAGCACCACCCTT+TGG | + | 43347:34000-34019 | MS.gene001261:CDS | 50.0% | |
| GCAGGCGCCTTGAAAAACTT+TGG | + | 43347:32817-32836 | MS.gene001261:CDS | 50.0% | |
| GCCACTGAGAACTAGTATGG+TGG | + | 43347:32659-32678 | MS.gene001261:CDS | 50.0% | |
| TCATGGGTTTGTGGAGAGGA+CGG | + | 43347:32497-32516 | MS.gene001261:CDS | 50.0% | |
| TGCCTAGCTGAACTAATGGG+CGG | + | 43347:31898-31917 | MS.gene001261:CDS | 50.0% | |
| TGCGGCAACTGGAAACAGAA+CGG | + | 43347:32531-32550 | MS.gene001261:intron | 50.0% | |
| TTTATAAGCCGGCCGCAGAT+TGG | + | 43347:31931-31950 | MS.gene001261:CDS | 50.0% | |
| ! | CCATCAGGCATCTCTTTTCC+CGG | - | 43347:32729-32748 | MS.gene001261:intergenic | 50.0% |
| ! | CCCACCATACTAGTTCTCAG+TGG | - | 43347:32663-32682 | MS.gene001261:intergenic | 50.0% |
| ! | CTAGTCACAGCAGCTCTAAC+AGG | - | 43347:32087-32106 | MS.gene001261:intergenic | 50.0% |
| !! | AACTATGGTGGTACCGGCAT+TGG | + | 43347:31859-31878 | MS.gene001261:CDS | 50.0% |
| ACAGGCAAGAAGAGACAGCC+GGG | + | 43347:32708-32727 | MS.gene001261:CDS | 55.0% | |
| ACGGCGAATGAGGAGACGAA+TGG | + | 43347:33367-33386 | MS.gene001261:CDS | 55.0% | |
| AGGACGGGATCTTCAGTGTG+CGG | + | 43347:32513-32532 | MS.gene001261:intron | 55.0% | |
| AGGTACTTCCAATCTGCGGC+CGG | - | 43347:31942-31961 | MS.gene001261:intergenic | 55.0% | |
| CATGGGTTTGTGGAGAGGAC+GGG | + | 43347:32498-32517 | MS.gene001261:CDS | 55.0% | |
| CCGGGAAAAGAGATGCCTGA+TGG | + | 43347:32726-32745 | MS.gene001261:CDS | 55.0% | |
| CGGCTAGGACTGCTTTCGAA+AGG | + | 43347:34056-34075 | MS.gene001261:CDS | 55.0% | |
| GACCGCCCATTAGTTCAGCT+AGG | - | 43347:31903-31922 | MS.gene001261:intergenic | 55.0% | |
| GATCTTCAGTGTGCGGCAAC+TGG | + | 43347:32520-32539 | MS.gene001261:intron | 55.0% | |
| GTCGAATTCGGGAGATGGAG+AGG | + | 43347:33344-33363 | MS.gene001261:CDS | 55.0% | |
| TGTGCATAGGCCACTCCACT+CGG | - | 43347:34088-34107 | MS.gene001261:intergenic | 55.0% | |
| GATGGAGAGGACGGCGAATG+AGG | + | 43347:33357-33376 | MS.gene001261:CDS | 60.0% | |
| TAGGCCACTCCACTCGGTAG+CGG | - | 43347:34082-34101 | MS.gene001261:intergenic | 60.0% | |
| TTCGAAAGGCCGCTACCGAG+TGG | + | 43347:34070-34089 | MS.gene001261:CDS | 60.0% | |
| AAGGCCGCTACCGAGTGGAG+TGG | + | 43347:34075-34094 | MS.gene001261:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43347 | gene | 31823 | 34189 | 31823 | ID=MS.gene001261 |
| 43347 | mRNA | 31823 | 34189 | 31823 | ID=MS.gene001261.t1;Parent=MS.gene001261 |
| 43347 | exon | 31823 | 32202 | 31823 | ID=MS.gene001261.t1.exon1;Parent=MS.gene001261.t1 |
| 43347 | CDS | 31823 | 32202 | 31823 | ID=cds.MS.gene001261.t1;Parent=MS.gene001261.t1 |
| 43347 | exon | 32460 | 32529 | 32460 | ID=MS.gene001261.t1.exon2;Parent=MS.gene001261.t1 |
| 43347 | CDS | 32460 | 32529 | 32460 | ID=cds.MS.gene001261.t1;Parent=MS.gene001261.t1 |
| 43347 | exon | 32567 | 32758 | 32567 | ID=MS.gene001261.t1.exon3;Parent=MS.gene001261.t1 |
| 43347 | CDS | 32567 | 32758 | 32567 | ID=cds.MS.gene001261.t1;Parent=MS.gene001261.t1 |
| 43347 | exon | 32793 | 32947 | 32793 | ID=MS.gene001261.t1.exon4;Parent=MS.gene001261.t1 |
| 43347 | CDS | 32793 | 32947 | 32793 | ID=cds.MS.gene001261.t1;Parent=MS.gene001261.t1 |
| 43347 | exon | 33330 | 33531 | 33330 | ID=MS.gene001261.t1.exon5;Parent=MS.gene001261.t1 |
| 43347 | CDS | 33330 | 33531 | 33330 | ID=cds.MS.gene001261.t1;Parent=MS.gene001261.t1 |
| 43347 | exon | 33911 | 34189 | 33911 | ID=MS.gene001261.t1.exon6;Parent=MS.gene001261.t1 |
| 43347 | CDS | 33911 | 34189 | 33911 | ID=cds.MS.gene001261.t1;Parent=MS.gene001261.t1 |
| Gene Sequence |
| Protein sequence |
