AlfalfaGEDB | MS.gene00145

M. sativa cultivar XinJiangDaYe / MS.gene00145

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00145.t1	XP_003594714.2	90.1	324	30	2	1	324	59	380	2.00E-94	355.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00145.t1	Q9FGZ4	47.2	180	87	2	132	310	208	380	5.7e-34	146.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00145.t1	G7IMS4	90.1	324	30	2	1	324	59	380	1.4e-94	355.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene00145.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00145.t1	MTR_2g033820	92.308	325	21	4	1	324	59	380	7.43e-168	472
MS.gene00145.t1	MTR_1g086790	47.097	310	131	8	6	310	36	317	1.00e-67	215
MS.gene00145.t1	MTR_7g109800	41.479	311	133	9	10	316	30	295	6.06e-54	178
MS.gene00145.t1	MTR_4g122530	36.813	364	148	11	14	310	60	408	7.58e-48	166
MS.gene00145.t1	MTR_5g043880	43.564	202	91	3	119	320	98	276	5.03e-45	155
MS.gene00145.t1	MTR_4g094588	51.786	168	78	2	91	255	123	290	2.80e-41	147
MS.gene00145.t1	MTR_5g091390	78.750	80	17	0	131	210	143	222	3.93e-40	143
MS.gene00145.t1	MTR_1g015140	67.500	80	26	0	123	202	80	159	1.51e-33	121
MS.gene00145.t1	MTR_8g007270	66.667	87	28	1	119	205	128	213	1.67e-33	123
MS.gene00145.t1	MTR_7g079010	70.513	78	23	0	125	202	121	198	5.46e-33	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00145.t1	AT2G47260	43.692	325	144	10	12	316	32	337	8.86e-56	184
MS.gene00145.t1	AT5G49520	50.472	212	69	5	114	310	190	380	3.23e-50	172
MS.gene00145.t1	AT1G69310	70.874	103	30	0	118	220	120	222	7.93e-46	157
MS.gene00145.t1	AT1G69310	70.874	103	30	0	118	220	120	222	7.93e-46	157
MS.gene00145.t1	AT1G69310	70.874	103	30	0	118	220	120	222	7.93e-46	157
MS.gene00145.t1	AT4G18170	51.220	164	65	3	60	208	72	235	3.63e-45	156
MS.gene00145.t1	AT1G29860	46.635	208	81	5	105	310	94	273	2.08e-43	150
MS.gene00145.t1	AT1G69310	66.990	103	30	1	118	220	120	218	4.05e-40	142
MS.gene00145.t1	AT3G62340	41.624	197	82	5	123	310	96	268	1.38e-38	138
MS.gene00145.t1	AT5G46350	59.649	114	44	1	95	208	135	246	3.39e-38	138

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Find 65 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACCTTAGAACAGCATAG+AGG	0.642711	2.1:+58757665	MS.gene00145:CDS
AACCGTTGCTTCATTAGACG+AGG	0.647141	2.1:-58757639	None:intergenic
AACCTCGATGATTAAACCCT+TGG	0.485705	2.1:-58758887	None:intergenic
AATTGTCGTCACTACTTACG+AGG	0.589893	2.1:+58758611	MS.gene00145:CDS
ACCAACATAACTAGAAGAAG+GGG	0.568208	2.1:-58758811	None:intergenic
ACCAAGATCAAGACAAGACT+AGG	0.598850	2.1:+58757726	MS.gene00145:CDS
ACCGGTGAGTTCTAACATCC+CGG	0.555255	2.1:+58757562	MS.gene00145:CDS
ACTTAGATGATGGCTATAGG+TGG	0.681297	2.1:+58758290	MS.gene00145:CDS
AGCTTCGGTGCTGCTGCTTC+GGG	0.319153	2.1:+58758699	MS.gene00145:CDS
AGGCTTTGTTAAGAGACAAT+GGG	0.516226	2.1:+58758934	MS.gene00145:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGAAGCAGAGTTAGA+AGG	+	chr2.1:58757698-58757717	MS.gene00145:CDS	30.0%
AAGATTATGTGTATGTACCT+GGG	-	chr2.1:58758355-58758374	None:intergenic	30.0%
ACTACTACACTGTTTATTGT+AGG	-	chr2.1:58758421-58758440	None:intergenic	30.0%
ATCTTCTTCTTATGGTTTCA+TGG	+	chr2.1:58757430-58757449	MS.gene00145:CDS	30.0%
GAAGAAATCGAACAAGAATT+CGG	-	chr2.1:58757620-58757639	None:intergenic	30.0%
GACCAAAAATCTTCTTCTTA+TGG	+	chr2.1:58757422-58757441	MS.gene00145:CDS	30.0%
TAAGATTATGTGTATGTACC+TGG	-	chr2.1:58758356-58758375	None:intergenic	30.0%
TTTGTCATGAAAGCAAATCT+GGG	-	chr2.1:58758256-58758275	None:intergenic	30.0%
ACCAACATAACTAGAAGAAG+GGG	-	chr2.1:58758814-58758833	None:intergenic	35.0%
CACCAACATAACTAGAAGAA+GGG	-	chr2.1:58758815-58758834	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	58757404	58759019	58757404	ID=MS.gene00145
chr2.1	mRNA	58757404	58759019	58757404	ID=MS.gene00145.t1;Parent=MS.gene00145
chr2.1	exon	58757404	58757753	58757404	ID=MS.gene00145.t1.exon1;Parent=MS.gene00145.t1
chr2.1	CDS	58757404	58757753	58757404	ID=cds.MS.gene00145.t1;Parent=MS.gene00145.t1
chr2.1	exon	58758213	58758356	58758213	ID=MS.gene00145.t1.exon2;Parent=MS.gene00145.t1
chr2.1	CDS	58758213	58758356	58758213	ID=cds.MS.gene00145.t1;Parent=MS.gene00145.t1
chr2.1	exon	58758539	58759019	58758539	ID=MS.gene00145.t1.exon3;Parent=MS.gene00145.t1
chr2.1	CDS	58758539	58759019	58758539	ID=cds.MS.gene00145.t1;Parent=MS.gene00145.t1

Gene Sequence

>MS.gene00145

ATGCCATCTTCCTCTTGTGACCAAAAATCTTCTTCTTATGGTTTCATGGACTTGTTGGGTTCCCATGATTACATCAACAACAACAACACTTTTTTATTATCGGATTGGGTTCCCACCGTCACGACGACAACAACAACAACCCATCACACTCTTTCGTCACCGGTGAGTTCTAACATCCCGGATTCATCCGAGGTATTGAACACTCCGGTGTCACCGAATTCTTGTTCGATTTCTTCCTCGTCTAATGAAGCAACGGTTAACAACACCTTAGAACAGCATAGAGGTAAACTTTCAAAAAATGAAGCAGAGTTAGAAGGAGATGACCAAGATCAAGACAAGACTAGGAAACAGTGAGTATTACCATTAATCAATAATTAAAAACTTCTATTTATTTTTCTCTCTTTTTTAATTTTTTTGTGACAATTAAGAAAACGCGTGATGAGTGGAGATATTTTAATGAAACATGAAACAGTTTCTGTTTCTATTCATTGAACTTAAAATATCCTTCTGTTCTTGTCGTTGCTATTCTCATCATTTGTCTCTGTTTTTTTTTTTTTTTCTTTCTTTTAATCACTTTATCATTGTTATTAGTGTTGTTATTTTAGAAAAAAATTACTAAATAAAATAGAAATAAGGGTTTTAGCTAACTAGAAATCTTGTAAAAAGTAGTAAAGAAATTATATTTTTTTAGAAAAAAATCACATTATTTATTACATGTATAATAATTCAATTTTTTTATGTGTCGTTATTAAAAAGATAGAAGCATAATTATACTAATTAATGGTGATTGTATATAAATCTTATGACAGATTGAAACCAAAGAAAAAGAACCAAAAAAAGGAAAGAGAACCCAGATTTGCTTTCATGACAAAGAGTGAAGTTGATCACTTAGATGATGGCTATAGGTGGCGTAAATATGGCCAAAAAGCTGTGAAAAACAGTCCTTTTCCCAGGTACATACACATAATCTTAAACTTTCTTCCATTTCATTTCTCAATTTTCTTTCTCTTGTGTCCTACAATAAACAGTGTAGTAGTTCACTAATTAATTTAATTTGGGTCATTAATTAGTTAATTAATAATATAATTTTTGACTTGTGGGACACGTAAATGTAACGGCGTTGAAACAAAAACAGGAGCTACTATCGTTGTACAACGGCAAGTTGCGGCGTGAAAAAGCGCGTGGAGCGTTCTTCCGATGATTCTTCAATTGTCGTCACTACTTACGAGGGTCAACATACACATCCTTCTCCTGCCACGTCACGTCCTAACCTCAGCTTCGTTCACCAACCTACTAGCTTCGGTGCTGCTGCTTCGGGTTCACACTCACACTTTCTTCTACCAACATTGTTGTACAATAATAACAACTCCACTAGTAATAATAATATTACTACTACTGCTACTACACCCCCTTCTTCTAGTTATGTTGGTGGCTCTAGTGGTAGTTACGTTAACACGTCGTCGTTTGGTGGTTTTGTGAATGACCAAGGGTTTAATCATCGAGGTTTTGGATCTTCTGGGTTTGTTAATGAGGCTTTGTTAAGAGACAATGGGTTGCTTCAAGATATTATTCAGATGAAAAAACAAGAAAAAGATTCAAGAAAAGAACAACATTAA

Protein sequence

>MS.gene00145.t1

MPSSSCDQKSSSYGFMDLLGSHDYINNNNTFLLSDWVPTVTTTTTTTHHTLSSPVSSNIPDSSEVLNTPVSPNSCSISSSSNEATVNNTLEQHRGKLSKNEAELEGDDQDQDKTRKQLKPKKKNQKKEREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPFPRSYYRCTTASCGVKKRVERSSDDSSIVVTTYEGQHTHPSPATSRPNLSFVHQPTSFGAAASGSHSHFLLPTLLYNNNNSTSNNNITTTATTPPSSSYVGGSSGSYVNTSSFGGFVNDQGFNHRGFGSSGFVNEALLRDNGLLQDIIQMKKQEKDSRKEQH