AlfalfaGEDB | MS.gene001558

M. sativa cultivar XinJiangDaYe / MS.gene001558

KEGG: -
GO: -
PFAM: PF06200.17 PF09425.13

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001558.t1	RHN42394.1	91.5	106	9	0	4	109	26	131	4.50E-43	183.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001558.t1	Q8LBM2	44.2	95	48	3	11	102	36	128	1.3e-09	63.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001558.t1	A0A396GSB0	91.5	106	9	0	4	109	26	131	3.2e-43	183.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene001558.t1	TF	Tify

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001558.t1	MTR_2g019190	60.000	95	27	3	17	102	41	133	1.62e-31	108
MS.gene001558.t1	MTR_8g107300	57.292	96	25	4	10	101	33	116	8.55e-28	98.6
MS.gene001558.t1	MTR_8g107300	59.770	87	22	3	19	101	4	81	4.22e-27	95.5

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001558.t1	AT1G30135	46.988	83	41	2	23	102	46	128	1.57e-15	67.4

Showing 1 to 1 of 1 entries

Previous1Next

Find 19 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATCATAAGCAGCAGTAC+AGG	0.470194	4.1:-16121077	MS.gene001558:CDS
AATCTTGCCATCATAGACAA+TGG	0.643141	4.1:+16121047	None:intergenic
ATTTATCTTAAGATGGTAAG+GGG	0.589050	4.1:+16118924	None:intergenic
CATTTATCTTAAGATGGTAA+GGG	0.531668	4.1:+16118923	None:intergenic
CCATCATAGACAATGGTCAA+CGG	0.652322	4.1:+16121054	None:intergenic
CCGTTGACCATTGTCTATGA+TGG	0.521959	4.1:-16121054	MS.gene001558:CDS
GAAATGGTGAGGACACCAAC+TGG	0.450322	4.1:-16119069	MS.gene001558:CDS
GAATCCGATTCTTCCTCTTT+TGG	0.250942	4.1:+16118956	None:intergenic
GACTGATGCCACTGAGATTC+AGG	0.303605	4.1:-16121019	MS.gene001558:intron
GCATGGAAAGAGAAGTACTA+GGG	0.573020	4.1:+16119001	None:intergenic

Showing 1 to 10 of 19 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATAGCATCATCATCTAGTT+AGG	-	chr4.1:16120755-16120774	MS.gene001558:intron	30.0%
ACAAGAATTAAAGAGAGAGA+GGG	+	chr4.1:16120132-16120151	None:intergenic	30.0%
AGAGATTCAGAAATTACTCA+AGG	-	chr4.1:16119858-16119877	MS.gene001558:intron	30.0%
TCTCTCTCTTTAATTCTTGT+GGG	-	chr4.1:16120132-16120151	MS.gene001558:intron	30.0%
TTGAATGAAAGTTTGGTTGA+GGG	+	chr4.1:16119754-16119773	None:intergenic	30.0%
TTGCAAAAAAAGAAATGGTG+AGG	-	chr4.1:16120949-16120968	MS.gene001558:intron	30.0%
AATCTTGCCATCATAGACAA+TGG	+	chr4.1:16118985-16119004	None:intergenic	35.0%
AATTGTATATATTGCAGGCC+AGG	-	chr4.1:16120913-16120932	MS.gene001558:intron	35.0%
AGTTTAAAAACTACTCCCTC+CGG	+	chr4.1:16119243-16119262	None:intergenic	35.0%
CACAAGAATTAAAGAGAGAG+AGG	+	chr4.1:16120133-16120152	None:intergenic	35.0%

Showing 1 to 10 of 113 entries

Previous1 2 3 4 5…12Next

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	16118912	16121139	16118912	ID=MS.gene001558
chr4.1	mRNA	16118912	16121139	16118912	ID=MS.gene001558.t1;Parent=MS.gene001558
chr4.1	exon	16121020	16121139	16121020	ID=MS.gene001558.t1.exon1;Parent=MS.gene001558.t1
chr4.1	CDS	16121020	16121139	16121020	ID=cds.MS.gene001558.t1;Parent=MS.gene001558.t1
chr4.1	exon	16118912	16119121	16118912	ID=MS.gene001558.t1.exon2;Parent=MS.gene001558.t1
chr4.1	CDS	16118912	16119121	16118912	ID=cds.MS.gene001558.t1;Parent=MS.gene001558.t1

Gene Sequence

>MS.gene001558

AATGAAAGAAGAAGAAGAAGAAGAGGTGAGAGTCCACAAGAAGATCATAAGCAGCAGTACAGGCCGTTGACCATTGTCTATGATGGCAAGATTTCTGTGACTGATGCCACTGAGATTCAGGTGTGTTCATGATTGTTCAATTTTCTGATTTTGAAAATAAAATAACTGAGATCTCTTCTTTTTTGTTTTTACTTTAATAATGTATTGTATTATTTGCTAATCTTATACTCACTCCGTTCACATTTATAAGCAAATTTTACTTTTTCAGATTCTAGATACATTACTTATTTAATGAACCTAAAAAAACAAAAATTGCATATAAATGTGACCGGAGGGAGTAGTTTTTAAACTACTATATATCTCTACAAATTATCTATGTGAACATGAAAAAAAGAATAACTAATGATTAATAAACCATATCATGTACAATAATGCATACTCCCTCCGGTCACATTTATAAGCAAAACACAATTTTTAAGGTTCATTGAATAAATAATGTATATGGTGTATAAATGTGACCAGATACATTAATTATTCTATGAACCTAAAAATTGTTTTTTTACTTATAAATGTGAACGGAGAGAAGTACACCAGAAAAATAAAAAACGTATATAGCTAGCTTTGTATTTATTTTCTCTTTTCAAAAAATGCATATGCAGGTCTTACTACACATGTGGTTAAGAATTCATACTTAGATTTTCATCTCTCAAAATATGTTTTTATTTTTTTATTTTTTAAAATATGGTTGTTTAATCCTCTTGAACGTCACCAAAAGTTTTTTGAGTAATCCGTTTTGGAGAGATCTGTTCTCCTTGTAGGTAGTTGATTTAGAGGTGATTCCCTCAACCAAACTTTCATTCAAGCTCTCATTCATCTCCATTTATCTTCTCTCTTTTAATTAAGAGAGAAATAAAGAGATTGATTTTATAAAGAAAGAAAGAAATAAAGAGATTCAGAAATTACTCAAGGAGAGTTTGATCAAGAGGATCAACTATTGTTGACTCTTTTATCATCATGAAACAAATTTTTTATGAAGCATGCATTTAGATTTTCTATACAATTAAAGAGATTAATTATATATAACTAAAATTTTAAATTAAATAGTTAGAGCATTCACAATGGTGGGTTCTTCACCTATTTAGCACCAGAATTAATAAGCACCCCCATTGTGGAAAGAAAATGCTTGGTGCTTACAGAGAAATGTGGCTCTATAATCACCCTCTCTCTCTTTAATTCTTGTGGGCCATACGTAATAAATTGTACACAAAACAATAAACTTTGTTGAAATACAATGACATTGAGTTATTAATATGATCTATTTATTAATTTTTTCTGCGGTGCTAGGTTGGAGAAATTGGATGCCTATTAAGTACTAATATCATTGAAAATTAAAAAAATAGATGATGTGTACATGCATGACCCACTTAAGCACCAAAAATGAAGTGTTATGTTGTAGATGGTCATGTAAAGTTAATTTTTACTACTAATAATCAAGACCAAAGATTATATGATGAAAAGACAAGTGAGAGAAAAGCTACAAATTTAGTAATAAAGGGAAAATTCCTTATAAATGCAAACTACAAATTGGTGATAGTTAAGCAAGACCAAGACAAACGAAAGATATAAATAAATCAGTAAGCGGTCTACATCTGAACTGTCCTTGTGAATGAAGTGAAGTTGGCTAAATTTCCAAATGCACTGCATCCATTTGTTGACCTCAAAATTTGGGCACAACTATATATATACACACATTTCTATATATATCCATGTTTTTTGATTTTTTTTTCTTTCTTTCTCAAGAGCCATTCTTTTTCAACTCACCTTAATATATTAAAATTAAAATAATAGCATCATCATCTAGTTAGGAGGCACGTAGCTAGACACTATTTTATTATAGCTCTTCAATTTTCACGTGCCATATTGTGATCACTCAAGAGATTCCTTATCATCAATAATAGTTTGAATTAAAATTGGAATTAAGTAGTGGGGTAATATAATGTGAATTGTATATATTGCAGGCCAGGTCCATTTTAATGCTTGCAAAAAAAGAAATGGTGAGGACACCAACTGGATCATCATCAGAGCCATCTTCACCATCAGTTTTTAACTTGTATAGCCCTAGTACTTCTCTTTCCATGCAAAAATCGTTGCAGAGGTTTCTCCAAAAGAGGAAGAATCGGATTCAAGAAGCATCCCCTTACCATCTTAAGATAAATGAGAAGAATTAA

Protein sequence

>MS.gene001558.t1

NERRRRRRGESPQEDHKQQYRPLTIVYDGKISVTDATEIQARSILMLAKKEMVRTPTGSSSEPSSPSVFNLYSPSTSLSMQKSLQRFLQKRKNRIQEASPYHLKINEKN