Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001601.t1 | AES65257.1 | 48.7 | 230 | 17 | 3 | 45 | 173 | 390 | 619 | 1.30E-39 | 173.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001601.t1 | G7ING5 | 48.7 | 230 | 17 | 3 | 45 | 173 | 390 | 619 | 9.0e-40 | 173.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene001601.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001601.t1 | MTR_2g037270 | 62.264 | 106 | 10 | 1 | 98 | 173 | 514 | 619 | 4.06e-33 | 126 |
| MS.gene001601.t1 | MTR_2g037270 | 87.755 | 49 | 6 | 0 | 45 | 93 | 390 | 438 | 4.44e-21 | 91.7 |
| MS.gene001601.t1 | MTR_8g017000 | 62.264 | 106 | 10 | 1 | 98 | 173 | 514 | 619 | 5.13e-33 | 125 |
| MS.gene001601.t1 | MTR_8g017000 | 87.755 | 49 | 6 | 0 | 45 | 93 | 390 | 438 | 4.40e-21 | 91.7 |
| MS.gene001601.t1 | MTR_3g011560 | 58.182 | 110 | 16 | 1 | 96 | 175 | 512 | 621 | 7.73e-31 | 119 |
| MS.gene001601.t1 | MTR_3g011560 | 87.755 | 49 | 6 | 0 | 45 | 93 | 390 | 438 | 4.21e-21 | 91.7 |
| MS.gene001601.t1 | MTR_8g063580 | 91.304 | 46 | 4 | 0 | 1 | 46 | 29 | 74 | 1.52e-23 | 92.4 |
| MS.gene001601.t1 | MTR_6g006270 | 82.979 | 47 | 8 | 0 | 45 | 91 | 110 | 156 | 1.93e-18 | 80.9 |
| MS.gene001601.t1 | MTR_2g023630 | 35.625 | 160 | 65 | 6 | 46 | 173 | 129 | 282 | 4.84e-17 | 78.6 |
| MS.gene001601.t1 | MTR_4g048180 | 27.841 | 176 | 72 | 3 | 45 | 171 | 35 | 204 | 1.38e-15 | 73.9 |
| MS.gene001601.t1 | MTR_2g092960 | 61.224 | 49 | 19 | 0 | 45 | 93 | 918 | 966 | 2.36e-15 | 75.1 |
| MS.gene001601.t1 | MTR_0462s0020 | 74.419 | 43 | 11 | 0 | 51 | 93 | 1 | 43 | 9.84e-15 | 72.0 |
| MS.gene001601.t1 | MTR_4g050295 | 75.000 | 48 | 9 | 1 | 46 | 93 | 132 | 176 | 1.07e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCAACACTTTCATTAAA+TGG | 0.223315 | 8.3:+30077619 | MS.gene001601:CDS |
| CTTGATCCATATTACAATCT+TGG | 0.283036 | 8.3:+30078099 | MS.gene001601:CDS |
| AAAGGTTACCTCACGCTTCT+TGG | 0.285767 | 8.3:-30078329 | None:intergenic |
| GTAACCTTTCTATGTTCATT+AGG | 0.299840 | 8.3:+30078343 | MS.gene001601:CDS |
| ATACCGTCGTTGTGTTGAAT+TGG | 0.347155 | 8.3:+30078053 | MS.gene001601:CDS |
| TCAGGTGCTAACTAATGATA+TGG | 0.369241 | 8.3:+30077515 | MS.gene001601:intron |
| CTTTCCTAATGAACATAGAA+AGG | 0.404929 | 8.3:-30078347 | None:intergenic |
| AAGGTTACCTCACGCTTCTT+GGG | 0.406397 | 8.3:-30078328 | None:intergenic |
| TATTGATTATTGTAGAGCTT+TGG | 0.411608 | 8.3:+30078476 | MS.gene001601:intron |
| TATCCTTATCCATCAGGATT+AGG | 0.413585 | 8.3:-30076714 | None:intergenic |
| TTTATTTATTTAGATATTTG+CGG | 0.419290 | 8.3:+30078867 | MS.gene001601:intron |
| TACCGTCGTTGTGTTGAATT+GGG | 0.437070 | 8.3:+30078054 | MS.gene001601:CDS |
| ACAATGGTGTTGTGGATTCA+TGG | 0.439291 | 8.3:+30078751 | MS.gene001601:CDS |
| TGACCTAATCCTGATGGATA+AGG | 0.440174 | 8.3:+30076711 | MS.gene001601:CDS |
| CAGGCATATCCTTATCCATC+AGG | 0.463932 | 8.3:-30076720 | None:intergenic |
| TACTCAATTTCCAGAGTTGA+AGG | 0.464815 | 8.3:+30078672 | MS.gene001601:intron |
| TTTCCAGAGTTGAAGGCAAT+CGG | 0.470594 | 8.3:+30078679 | MS.gene001601:intron |
| CAAATGACGTTGAGTAACTT+AGG | 0.479404 | 8.3:+30076622 | None:intergenic |
| GGATTCAACTCCCTTGCAAA+AGG | 0.489758 | 8.3:+30078888 | MS.gene001601:CDS |
| AGGTTATAATACGCTACAAC+GGG | 0.495884 | 8.3:+30078500 | MS.gene001601:CDS |
| ACCTCAGTTCCATTCATCTC+AGG | 0.498117 | 8.3:-30076739 | None:intergenic |
| AAGGATATGCCTGAGATGAA+TGG | 0.499813 | 8.3:+30076730 | MS.gene001601:CDS |
| TTGGGCAAAAGTGGCATGTA+CGG | 0.511366 | 8.3:+30078072 | MS.gene001601:CDS |
| AAAATTTGACCTAATCCTGA+TGG | 0.515076 | 8.3:+30076705 | MS.gene001601:CDS |
| GATTATTGTAGAGCTTTGGA+AGG | 0.551376 | 8.3:+30078480 | MS.gene001601:intron |
| GGTTAGAGTGGCTGTTACCA+AGG | 0.554145 | 8.3:+30077536 | MS.gene001601:CDS |
| TGTGTTGAATTGGGCAAAAG+TGG | 0.566772 | 8.3:+30078063 | MS.gene001601:CDS |
| ATGTTCATTAGGAAAGAAGC+CGG | 0.566896 | 8.3:+30078354 | MS.gene001601:CDS |
| AGCCTTTGCATCTATCACCT+TGG | 0.576125 | 8.3:-30077553 | None:intergenic |
| AATTGTTGTCACCTCATCAG+TGG | 0.597754 | 8.3:-30077589 | None:intergenic |
| TACCAAGGTGATAGATGCAA+AGG | 0.597794 | 8.3:+30077551 | MS.gene001601:CDS |
| AACTAATGATATGGTTAGAG+TGG | 0.601806 | 8.3:+30077524 | MS.gene001601:CDS |
| AACATCGTACAATGGTGTTG+TGG | 0.605422 | 8.3:+30078743 | MS.gene001601:CDS |
| GTCACCTCATCAGTGGGCAC+AGG | 0.609740 | 8.3:-30077582 | None:intergenic |
| CAATCGGTTTGTTACGCGAG+CGG | 0.612987 | 8.3:+30078695 | MS.gene001601:CDS |
| ACAGTGGAAATTCGTCAGCA+TGG | 0.623061 | 8.3:+30076679 | MS.gene001601:CDS |
| AGTACCTGTGCCCACTGATG+AGG | 0.629379 | 8.3:+30077578 | MS.gene001601:CDS |
| ATTGTTGTCACCTCATCAGT+GGG | 0.629706 | 8.3:-30077588 | None:intergenic |
| TGCCCAATTCAACACAACGA+CGG | 0.629992 | 8.3:-30078056 | None:intergenic |
| AAGGTTATAATACGCTACAA+CGG | 0.650359 | 8.3:+30078499 | MS.gene001601:CDS |
| ATATGTTGAACATCGTACAA+TGG | 0.658819 | 8.3:+30078735 | MS.gene001601:CDS |
| AATTAATCCCAAGAAGCGTG+AGG | 0.680170 | 8.3:+30078321 | MS.gene001601:CDS |
| TGAGGTGACAACAATTGCTG+AGG | 0.688716 | 8.3:+30077596 | MS.gene001601:CDS |
| GCCTGAGATGAATGGAACTG+AGG | 0.719916 | 8.3:+30076738 | MS.gene001601:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATTAAGTAATTGAA+TGG | - | chr8.3:30077998-30078017 | None:intergenic | 10.0% |
| !! | ATATATAAATGTAAAAATTG+GGG | - | chr8.3:30076784-30076803 | None:intergenic | 10.0% |
| !! | TTTATTTATTTAGATATTTG+CGG | + | chr8.3:30078867-30078886 | MS.gene001601:intron | 10.0% |
| !!! | AAAAATTACTTGTTAAATTA+AGG | - | chr8.3:30078201-30078220 | None:intergenic | 10.0% |
| !!! | TATTTTGTTTGTAAATTTAA+TGG | + | chr8.3:30077972-30077991 | MS.gene001601:intron | 10.0% |
| !!! | TTTTTCTTTTATTTTTTCAA+CGG | - | chr8.3:30077117-30077136 | None:intergenic | 10.0% |
| !!! | TGTGTAATGTTTTATTATAA+TGG | + | chr8.3:30077725-30077744 | MS.gene001601:intron | 15.0% |
| !!! | TTTTTATGTGTTTCTTATAT+AGG | + | chr8.3:30076921-30076940 | MS.gene001601:intron | 15.0% |
| !! | AAATTTCATTTCACTATCTT+AGG | + | chr8.3:30078025-30078044 | MS.gene001601:intron | 20.0% |
| !! | GAAATAGTGGTAAAATTTAT+GGG | + | chr8.3:30077026-30077045 | MS.gene001601:intron | 20.0% |
| !!! | AAAGCTATTTCAATTTGTAA+CGG | + | chr8.3:30077458-30077477 | MS.gene001601:intron | 20.0% |
| !!! | ACTGATAAATTTTTATATGC+CGG | - | chr8.3:30078376-30078395 | None:intergenic | 20.0% |
| !!! | AGTACAAAACCTTTTAATTA+TGG | - | chr8.3:30078173-30078192 | None:intergenic | 20.0% |
| ! | ATCTCTATATTACAAGTGAT+TGG | - | chr8.3:30078239-30078258 | None:intergenic | 25.0% |
| ! | GAAACTATAACCATTAAGTA+GGG | - | chr8.3:30077237-30077256 | None:intergenic | 25.0% |
| ! | GGAAATAGTGGTAAAATTTA+TGG | + | chr8.3:30077025-30077044 | MS.gene001601:intron | 25.0% |
| ! | TACTTTATCTATCATCTTTG+TGG | + | chr8.3:30078584-30078603 | MS.gene001601:intron | 25.0% |
| ! | TGAAACTATAACCATTAAGT+AGG | - | chr8.3:30077238-30077257 | None:intergenic | 25.0% |
| !! | CACTATCAATTTTTGACAAT+AGG | - | chr8.3:30077804-30077823 | None:intergenic | 25.0% |
| !! | TATTGATTATTGTAGAGCTT+TGG | + | chr8.3:30078476-30078495 | MS.gene001601:intron | 25.0% |
| !! | TTTTGACCAAGATTGTAATA+TGG | - | chr8.3:30078108-30078127 | None:intergenic | 25.0% |
| !!! | TTGTCAAAAATTGATAGTGA+AGG | + | chr8.3:30077805-30077824 | MS.gene001601:intron | 25.0% |
| AAAATTTGACCTAATCCTGA+TGG | + | chr8.3:30076705-30076724 | MS.gene001601:CDS | 30.0% | |
| AAACAAAGAGTGAACAAATC+TGG | - | chr8.3:30077422-30077441 | None:intergenic | 30.0% | |
| AACAACACTTGTGTGAAAAA+CGG | + | chr8.3:30076649-30076668 | MS.gene001601:CDS | 30.0% | |
| AACTAATGATATGGTTAGAG+TGG | + | chr8.3:30077524-30077543 | MS.gene001601:CDS | 30.0% | |
| AAGGTTATAATACGCTACAA+CGG | + | chr8.3:30078499-30078518 | MS.gene001601:CDS | 30.0% | |
| ATATGTTGAACATCGTACAA+TGG | + | chr8.3:30078735-30078754 | MS.gene001601:CDS | 30.0% | |
| CAAGTGATTGGATATAAAGA+AGG | - | chr8.3:30078227-30078246 | None:intergenic | 30.0% | |
| CTGTCAACACTTTCATTAAA+TGG | + | chr8.3:30077619-30077638 | MS.gene001601:CDS | 30.0% | |
| CTTGATCCATATTACAATCT+TGG | + | chr8.3:30078099-30078118 | MS.gene001601:CDS | 30.0% | |
| CTTTCCTAATGAACATAGAA+AGG | - | chr8.3:30078350-30078369 | None:intergenic | 30.0% | |
| GAGTTCATTCTTGCTTATTT+AGG | + | chr8.3:30076818-30076837 | MS.gene001601:intron | 30.0% | |
| GTAACCTTTCTATGTTCATT+AGG | + | chr8.3:30078343-30078362 | MS.gene001601:CDS | 30.0% | |
| TATAACCATTAAGTAGGGAA+AGG | - | chr8.3:30077232-30077251 | None:intergenic | 30.0% | |
| ! | AAGTTTAAGGCTAAACATAG+TGG | + | chr8.3:30077852-30077871 | MS.gene001601:intron | 30.0% |
| ! | ACAAAAGTACAATGAATGCA+AGG | + | chr8.3:30077168-30077187 | MS.gene001601:intron | 30.0% |
| ! | AGTAGTATGATTTTATCCCA+CGG | + | chr8.3:30078540-30078559 | MS.gene001601:CDS | 30.0% |
| ! | AGTTTAAGGCTAAACATAGT+GGG | + | chr8.3:30077853-30077872 | MS.gene001601:intron | 30.0% |
| ! | GATAACTCGAAAAGTCTTTT+TGG | - | chr8.3:30077645-30077664 | None:intergenic | 30.0% |
| ! | TTTTTCCTTTCCCTACTTAA+TGG | + | chr8.3:30077224-30077243 | MS.gene001601:intron | 30.0% |
| !! | GAACAAAGCTTTGAAGTTTA+AGG | + | chr8.3:30077839-30077858 | MS.gene001601:intron | 30.0% |
| !!! | ACTCTTTGTTTTGTAACTGT+CGG | + | chr8.3:30077431-30077450 | MS.gene001601:intron | 30.0% |
| !!! | TTTTCGAGTTATCGCTAATA+AGG | + | chr8.3:30077652-30077671 | MS.gene001601:CDS | 30.0% |
| AAATTCCATTCCTCACAAGA+TGG | + | chr8.3:30077139-30077158 | MS.gene001601:intron | 35.0% | |
| AACAAAGCAATTACGCTTGA+TGG | + | chr8.3:30076945-30076964 | MS.gene001601:intron | 35.0% | |
| AACCTACATTCAAAACACGA+TGG | + | chr8.3:30078146-30078165 | MS.gene001601:intron | 35.0% | |
| ACAAAGCAATTACGCTTGAT+GGG | + | chr8.3:30076946-30076965 | MS.gene001601:intron | 35.0% | |
| AGGTTATAATACGCTACAAC+GGG | + | chr8.3:30078500-30078519 | MS.gene001601:CDS | 35.0% | |
| ATCAAATGTGCTCGATTAGT+CGG | - | chr8.3:30078650-30078669 | None:intergenic | 35.0% | |
| ATGTGTAAACAACTTACCGT+GGG | - | chr8.3:30078559-30078578 | None:intergenic | 35.0% | |
| ATGTTCATTAGGAAAGAAGC+CGG | + | chr8.3:30078354-30078373 | MS.gene001601:CDS | 35.0% | |
| CACGATGGACCATAATTAAA+AGG | + | chr8.3:30078161-30078180 | MS.gene001601:intron | 35.0% | |
| CGAATATCTAGAGAAACCAT+TGG | + | chr8.3:30077061-30077080 | MS.gene001601:intron | 35.0% | |
| GAAAAACGGAAAAGAAACAG+TGG | + | chr8.3:30076663-30076682 | MS.gene001601:CDS | 35.0% | |
| GATAGTGAAGGCAATGTATA+TGG | + | chr8.3:30077817-30077836 | MS.gene001601:intron | 35.0% | |
| GATATCATGGACTTGTGTTT+GGG | + | chr8.3:30077900-30077919 | MS.gene001601:intron | 35.0% | |
| GATTGATATTGAGCTACCAA+GGG | + | chr8.3:30077875-30077894 | MS.gene001601:intron | 35.0% | |
| GTAGGGAAAGGAAAAATACA+AGG | - | chr8.3:30077220-30077239 | None:intergenic | 35.0% | |
| TACTCAATTTCCAGAGTTGA+AGG | + | chr8.3:30078672-30078691 | MS.gene001601:intron | 35.0% | |
| TATCCTTATCCATCAGGATT+AGG | - | chr8.3:30076717-30076736 | None:intergenic | 35.0% | |
| TCAGGTGCTAACTAATGATA+TGG | + | chr8.3:30077515-30077534 | MS.gene001601:intron | 35.0% | |
| TCTAGAGAAACCATTGGATA+AGG | + | chr8.3:30077067-30077086 | MS.gene001601:intron | 35.0% | |
| TGATATCATGGACTTGTGTT+TGG | + | chr8.3:30077899-30077918 | MS.gene001601:intron | 35.0% | |
| TGATGTTCCACAGAAAAAGT+CGG | + | chr8.3:30077776-30077795 | MS.gene001601:intron | 35.0% | |
| TGTAGGTTTGAACACTAACT+TGG | - | chr8.3:30078134-30078153 | None:intergenic | 35.0% | |
| TGTGGAACATCAACTTTCAT+AGG | - | chr8.3:30077768-30077787 | None:intergenic | 35.0% | |
| ! | GTGACAAAGCTATTTCAATC+AGG | + | chr8.3:30077497-30077516 | MS.gene001601:intron | 35.0% |
| ! | TTGAGTTTTGCCTTATCCAA+TGG | - | chr8.3:30077080-30077099 | None:intergenic | 35.0% |
| !! | GATTATTGTAGAGCTTTGGA+AGG | + | chr8.3:30078480-30078499 | MS.gene001601:intron | 35.0% |
| !! | TTTTTCAACGGCATGAAGAA+TGG | - | chr8.3:30077105-30077124 | None:intergenic | 35.0% |
| AAGGATATGCCTGAGATGAA+TGG | + | chr8.3:30076730-30076749 | MS.gene001601:CDS | 40.0% | |
| AAGTCCATGATATCATCCCT+TGG | - | chr8.3:30077894-30077913 | None:intergenic | 40.0% | |
| AATTGTTGTCACCTCATCAG+TGG | - | chr8.3:30077592-30077611 | None:intergenic | 40.0% | |
| ATACCGTCGTTGTGTTGAAT+TGG | + | chr8.3:30078053-30078072 | MS.gene001601:CDS | 40.0% | |
| ATTGTTGTCACCTCATCAGT+GGG | - | chr8.3:30077591-30077610 | None:intergenic | 40.0% | |
| CAAAGCAATTACGCTTGATG+GGG | + | chr8.3:30076947-30076966 | MS.gene001601:intron | 40.0% | |
| CATGTGTAAACAACTTACCG+TGG | - | chr8.3:30078560-30078579 | None:intergenic | 40.0% | |
| CATTCTTGCTTATTTAGGCG+TGG | + | chr8.3:30076823-30076842 | MS.gene001601:intron | 40.0% | |
| GGATTGATATTGAGCTACCA+AGG | + | chr8.3:30077874-30077893 | MS.gene001601:intron | 40.0% | |
| GGGATATCTAGCACTATTGT+TGG | + | chr8.3:30076967-30076986 | MS.gene001601:intron | 40.0% | |
| GTGGTAAAATTTATGGGAGC+AGG | + | chr8.3:30077032-30077051 | MS.gene001601:intron | 40.0% | |
| TACCAAGGTGATAGATGCAA+AGG | + | chr8.3:30077551-30077570 | MS.gene001601:CDS | 40.0% | |
| TACCGTCGTTGTGTTGAATT+GGG | + | chr8.3:30078054-30078073 | MS.gene001601:CDS | 40.0% | |
| TATGGAAGAGGAGGAAATAG+TGG | + | chr8.3:30077013-30077032 | MS.gene001601:intron | 40.0% | |
| TGTGTTGAATTGGGCAAAAG+TGG | + | chr8.3:30078063-30078082 | MS.gene001601:CDS | 40.0% | |
| TTCACGTGAGACTCAATAGA+AGG | - | chr8.3:30077274-30077293 | None:intergenic | 40.0% | |
| TTGTTCATCTCCATCTTGTG+AGG | - | chr8.3:30077152-30077171 | None:intergenic | 40.0% | |
| TTTCCAGAGTTGAAGGCAAT+CGG | + | chr8.3:30078679-30078698 | MS.gene001601:intron | 40.0% | |
| ! | AACATCGTACAATGGTGTTG+TGG | + | chr8.3:30078743-30078762 | MS.gene001601:CDS | 40.0% |
| ! | AATTAATCCCAAGAAGCGTG+AGG | + | chr8.3:30078321-30078340 | MS.gene001601:CDS | 40.0% |
| ! | TGACCTAATCCTGATGGATA+AGG | + | chr8.3:30076711-30076730 | MS.gene001601:CDS | 40.0% |
| !! | ACAATGGTGTTGTGGATTCA+TGG | + | chr8.3:30078751-30078770 | MS.gene001601:CDS | 40.0% |
| !! | ATAGGTTCCGACTTTTTCTG+TGG | - | chr8.3:30077786-30077805 | None:intergenic | 40.0% |
| !! | GTCCATCGTGTTTTGAATGT+AGG | - | chr8.3:30078151-30078170 | None:intergenic | 40.0% |
| AAACCGATTGCCTTCAACTC+TGG | - | chr8.3:30078685-30078704 | None:intergenic | 45.0% | |
| AAAGGTTACCTCACGCTTCT+TGG | - | chr8.3:30078332-30078351 | None:intergenic | 45.0% | |
| AAGGTTACCTCACGCTTCTT+GGG | - | chr8.3:30078331-30078350 | None:intergenic | 45.0% | |
| ACAGTCACACTCTATGGAAG+AGG | + | chr8.3:30077001-30077020 | MS.gene001601:intron | 45.0% | |
| ACAGTGGAAATTCGTCAGCA+TGG | + | chr8.3:30076679-30076698 | MS.gene001601:CDS | 45.0% | |
| ACCTCAGTTCCATTCATCTC+AGG | - | chr8.3:30076742-30076761 | None:intergenic | 45.0% | |
| AGCCTTTGCATCTATCACCT+TGG | - | chr8.3:30077556-30077575 | None:intergenic | 45.0% | |
| CAGGCATATCCTTATCCATC+AGG | - | chr8.3:30076723-30076742 | None:intergenic | 45.0% | |
| CATCTCCATCTTGTGAGGAA+TGG | - | chr8.3:30077147-30077166 | None:intergenic | 45.0% | |
| GCTACCAAGGGATGATATCA+TGG | + | chr8.3:30077887-30077906 | MS.gene001601:intron | 45.0% | |
| GGATTCAACTCCCTTGCAAA+AGG | + | chr8.3:30078888-30078907 | MS.gene001601:CDS | 45.0% | |
| TGAGGTGACAACAATTGCTG+AGG | + | chr8.3:30077596-30077615 | MS.gene001601:CDS | 45.0% | |
| TGCCCAATTCAACACAACGA+CGG | - | chr8.3:30078059-30078078 | None:intergenic | 45.0% | |
| TTGGGCAAAAGTGGCATGTA+CGG | + | chr8.3:30078072-30078091 | MS.gene001601:CDS | 45.0% | |
| !! | TATATATAAATGTAAAAATT+GGG | - | chr8.3:30076785-30076804 | None:intergenic | 5.0% |
| !! | TTATATATAAATGTAAAAAT+TGG | - | chr8.3:30076786-30076805 | None:intergenic | 5.0% |
| AACTGCCAGTGACGACTACA+AGG | - | chr8.3:30078295-30078314 | None:intergenic | 50.0% | |
| AATGCCCTTGTAGTCGTCAC+TGG | + | chr8.3:30078287-30078306 | MS.gene001601:intron | 50.0% | |
| ACTGCCAGTGACGACTACAA+GGG | - | chr8.3:30078294-30078313 | None:intergenic | 50.0% | |
| CCATAGAGTGTGACTGTGTG+AGG | - | chr8.3:30076998-30077017 | None:intergenic | 50.0% | |
| CCTCACACAGTCACACTCTA+TGG | + | chr8.3:30076995-30077014 | MS.gene001601:intron | 50.0% | |
| GCCTGAGATGAATGGAACTG+AGG | + | chr8.3:30076738-30076757 | MS.gene001601:CDS | 50.0% | |
| GGTTAGAGTGGCTGTTACCA+AGG | + | chr8.3:30077536-30077555 | MS.gene001601:CDS | 50.0% | |
| GTCACACTCTATGGAAGAGG+AGG | + | chr8.3:30077004-30077023 | MS.gene001601:intron | 50.0% | |
| !! | CAATCGGTTTGTTACGCGAG+CGG | + | chr8.3:30078695-30078714 | MS.gene001601:CDS | 50.0% |
| AGTACCTGTGCCCACTGATG+AGG | + | chr8.3:30077578-30077597 | MS.gene001601:CDS | 55.0% | |
| GTCACCTCATCAGTGGGCAC+AGG | - | chr8.3:30077585-30077604 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 30076625 | 30078919 | 30076625 | ID=MS.gene001601 |
| chr8.3 | mRNA | 30076625 | 30078919 | 30076625 | ID=MS.gene001601.t1;Parent=MS.gene001601 |
| chr8.3 | exon | 30076625 | 30076759 | 30076625 | ID=MS.gene001601.t1.exon1;Parent=MS.gene001601.t1 |
| chr8.3 | CDS | 30076625 | 30076759 | 30076625 | ID=cds.MS.gene001601.t1;Parent=MS.gene001601.t1 |
| chr8.3 | exon | 30077519 | 30077673 | 30077519 | ID=MS.gene001601.t1.exon2;Parent=MS.gene001601.t1 |
| chr8.3 | CDS | 30077519 | 30077673 | 30077519 | ID=cds.MS.gene001601.t1;Parent=MS.gene001601.t1 |
| chr8.3 | exon | 30078047 | 30078134 | 30078047 | ID=MS.gene001601.t1.exon3;Parent=MS.gene001601.t1 |
| chr8.3 | CDS | 30078047 | 30078134 | 30078047 | ID=cds.MS.gene001601.t1;Parent=MS.gene001601.t1 |
| chr8.3 | exon | 30078313 | 30078407 | 30078313 | ID=MS.gene001601.t1.exon4;Parent=MS.gene001601.t1 |
| chr8.3 | CDS | 30078313 | 30078407 | 30078313 | ID=cds.MS.gene001601.t1;Parent=MS.gene001601.t1 |
| chr8.3 | exon | 30078491 | 30078561 | 30078491 | ID=MS.gene001601.t1.exon5;Parent=MS.gene001601.t1 |
| chr8.3 | CDS | 30078491 | 30078561 | 30078491 | ID=cds.MS.gene001601.t1;Parent=MS.gene001601.t1 |
| chr8.3 | exon | 30078686 | 30078779 | 30078686 | ID=MS.gene001601.t1.exon6;Parent=MS.gene001601.t1 |
| chr8.3 | CDS | 30078686 | 30078779 | 30078686 | ID=cds.MS.gene001601.t1;Parent=MS.gene001601.t1 |
| chr8.3 | exon | 30078880 | 30078919 | 30078880 | ID=MS.gene001601.t1.exon7;Parent=MS.gene001601.t1 |
| chr8.3 | CDS | 30078880 | 30078919 | 30078880 | ID=cds.MS.gene001601.t1;Parent=MS.gene001601.t1 |
| Gene Sequence |
| Protein sequence |
