Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001679.t1 | XP_003591828.2 | 84 | 489 | 30 | 2 | 1 | 449 | 1 | 481 | 5.50E-220 | 773.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001679.t1 | Q6NQK2 | 48.0 | 485 | 173 | 8 | 4 | 447 | 2 | 448 | 5.3e-115 | 416.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001679.t1 | G7I498 | 84.0 | 489 | 30 | 2 | 1 | 449 | 1 | 481 | 3.9e-220 | 773.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene001679.t1 | TF | NAC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001679.t1 | MTR_1g093680 | 84.254 | 489 | 29 | 2 | 1 | 449 | 1 | 481 | 0.0 | 841 |
| MS.gene001679.t1 | MTR_5g053430 | 60.504 | 476 | 121 | 6 | 4 | 448 | 2 | 441 | 0.0 | 553 |
| MS.gene001679.t1 | MTR_5g053430 | 60.714 | 476 | 123 | 6 | 4 | 448 | 2 | 444 | 0.0 | 552 |
| MS.gene001679.t1 | MTR_1g093670 | 59.753 | 405 | 95 | 6 | 41 | 443 | 6 | 344 | 7.24e-156 | 445 |
| MS.gene001679.t1 | MTR_7g033320 | 56.075 | 214 | 92 | 1 | 8 | 219 | 5 | 218 | 2.65e-83 | 265 |
| MS.gene001679.t1 | MTR_8g102240 | 59.162 | 191 | 68 | 4 | 36 | 218 | 27 | 215 | 5.15e-74 | 240 |
| MS.gene001679.t1 | MTR_8g102240 | 59.162 | 191 | 68 | 4 | 36 | 218 | 27 | 215 | 5.29e-74 | 240 |
| MS.gene001679.t1 | MTR_2g014680 | 49.597 | 248 | 120 | 3 | 7 | 251 | 2 | 247 | 7.24e-74 | 234 |
| MS.gene001679.t1 | MTR_4g088245 | 58.115 | 191 | 77 | 2 | 36 | 223 | 44 | 234 | 1.92e-71 | 228 |
| MS.gene001679.t1 | MTR_8g069160 | 58.333 | 180 | 72 | 2 | 36 | 212 | 44 | 223 | 6.48e-68 | 217 |
| MS.gene001679.t1 | MTR_4g078875 | 55.729 | 192 | 80 | 2 | 37 | 223 | 24 | 215 | 9.94e-68 | 218 |
| MS.gene001679.t1 | MTR_2g090735 | 57.068 | 191 | 78 | 2 | 37 | 223 | 25 | 215 | 1.80e-63 | 207 |
| MS.gene001679.t1 | MTR_8g076110 | 27.615 | 239 | 136 | 11 | 58 | 277 | 6 | 226 | 5.88e-11 | 63.9 |
| MS.gene001679.t1 | MTR_4g036030 | 24.101 | 278 | 177 | 10 | 58 | 328 | 7 | 257 | 6.62e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001679.t1 | AT1G25580 | 49.692 | 487 | 162 | 11 | 4 | 447 | 2 | 448 | 1.02e-145 | 423 |
| MS.gene001679.t1 | AT3G01600 | 56.054 | 223 | 93 | 3 | 7 | 227 | 4 | 223 | 2.58e-81 | 256 |
| MS.gene001679.t1 | AT5G14490 | 49.603 | 252 | 118 | 3 | 1 | 250 | 1 | 245 | 5.68e-78 | 246 |
| MS.gene001679.t1 | AT5G14490 | 50.000 | 246 | 114 | 3 | 7 | 250 | 4 | 242 | 9.33e-78 | 243 |
| MS.gene001679.t1 | AT5G14490 | 50.000 | 246 | 114 | 3 | 7 | 250 | 4 | 242 | 1.29e-77 | 245 |
| MS.gene001679.t1 | AT5G14490 | 49.603 | 252 | 118 | 3 | 1 | 250 | 1 | 245 | 1.32e-77 | 246 |
| MS.gene001679.t1 | AT4G29230 | 58.333 | 192 | 69 | 3 | 36 | 218 | 28 | 217 | 2.82e-76 | 245 |
| MS.gene001679.t1 | AT4G29230 | 58.333 | 192 | 69 | 3 | 36 | 218 | 28 | 217 | 1.19e-75 | 245 |
| MS.gene001679.t1 | AT4G29230 | 57.812 | 192 | 69 | 3 | 36 | 218 | 28 | 216 | 9.34e-75 | 243 |
| MS.gene001679.t1 | AT1G28470 | 53.110 | 209 | 92 | 2 | 21 | 223 | 35 | 243 | 2.71e-71 | 228 |
| MS.gene001679.t1 | AT5G56620 | 54.592 | 196 | 74 | 4 | 36 | 218 | 22 | 215 | 2.73e-69 | 226 |
| MS.gene001679.t1 | AT5G56620 | 54.592 | 196 | 74 | 4 | 36 | 218 | 22 | 215 | 2.83e-69 | 226 |
| MS.gene001679.t1 | AT5G56620 | 54.592 | 196 | 74 | 4 | 36 | 218 | 22 | 215 | 5.52e-69 | 224 |
| MS.gene001679.t1 | AT4G28500 | 54.450 | 191 | 83 | 2 | 37 | 223 | 36 | 226 | 1.55e-67 | 218 |
| MS.gene001679.t1 | AT3G04420 | 32.099 | 162 | 91 | 7 | 59 | 216 | 4 | 150 | 4.16e-12 | 67.0 |
| MS.gene001679.t1 | AT1G01720 | 35.417 | 144 | 72 | 7 | 58 | 198 | 7 | 132 | 6.78e-12 | 66.6 |
| MS.gene001679.t1 | AT1G33060 | 31.176 | 170 | 89 | 8 | 57 | 216 | 23 | 174 | 1.25e-11 | 67.4 |
| MS.gene001679.t1 | AT1G33060 | 31.176 | 170 | 89 | 8 | 57 | 216 | 23 | 174 | 1.27e-11 | 67.4 |
| MS.gene001679.t1 | AT3G04420 | 32.099 | 162 | 91 | 7 | 59 | 216 | 4 | 150 | 1.27e-11 | 66.2 |
| MS.gene001679.t1 | AT1G12260 | 30.337 | 178 | 99 | 9 | 58 | 226 | 7 | 168 | 5.54e-11 | 64.7 |
| MS.gene001679.t1 | AT1G12260 | 30.337 | 178 | 99 | 9 | 58 | 226 | 7 | 168 | 7.02e-11 | 63.9 |
Find 96 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATATGTGGTCAAGATTT+TGG | 0.149918 | 1.3:-65054340 | MS.gene001679:CDS |
| ATTTATCACTACTCTTAAAA+TGG | 0.223272 | 1.3:-65054566 | MS.gene001679:CDS |
| CTTTCTGTATATGCTCATTT+AGG | 0.224428 | 1.3:-65052970 | MS.gene001679:CDS |
| CCAGCAGCAGCAAGCCAAAT+TGG | 0.225006 | 1.3:-65054113 | MS.gene001679:CDS |
| TCGATAACATGTTGACAATT+TGG | 0.240409 | 1.3:+65056712 | None:intergenic |
| CAGTGTCAGCGTCAAGATTA+AGG | 0.257120 | 1.3:+65052866 | None:intergenic |
| ACAGTTGCTTCCGAGGTTTC+AGG | 0.268678 | 1.3:+65054067 | None:intergenic |
| CTTTCGGCTTCCAGTATTAT+AGG | 0.275483 | 1.3:+65054369 | None:intergenic |
| CGATAACATGTTGACAATTT+GGG | 0.296736 | 1.3:+65056713 | None:intergenic |
| CATCTGATCAAGAGATAATA+TGG | 0.323541 | 1.3:-65054645 | MS.gene001679:CDS |
| GCAATCAAAGCCTATAATAC+TGG | 0.327546 | 1.3:-65054379 | MS.gene001679:CDS |
| CTCTCCCTTATGGCTACGTC+TGG | 0.329947 | 1.3:-65057781 | None:intergenic |
| TTCTCATTGCGAGGAGGTTC+AGG | 0.331317 | 1.3:+65054007 | None:intergenic |
| CCGAGGTTTCAGGAACATTT+CGG | 0.345511 | 1.3:+65054077 | None:intergenic |
| TATAGGCTTTGATTGCTCTA+TGG | 0.349409 | 1.3:+65054386 | None:intergenic |
| AGGTTCAGGCGTCACGGAAT+TGG | 0.365916 | 1.3:+65054021 | None:intergenic |
| AGATTCTACCAGATCTTTCT+CGG | 0.381982 | 1.3:-65053218 | MS.gene001679:CDS |
| GGTTCAGGCGTCACGGAATT+GGG | 0.400382 | 1.3:+65054022 | None:intergenic |
| GAAAAGCTGAGAAAACTAAC+TGG | 0.402325 | 1.3:-65054210 | MS.gene001679:CDS |
| CCAATTTGGCTTGCTGCTGC+TGG | 0.410429 | 1.3:+65054113 | None:intergenic |
| CAGATCTTTCTCGGTTAGAA+TGG | 0.419534 | 1.3:-65053209 | MS.gene001679:CDS |
| CAGTGTCAAGGTTGAAACTT+TGG | 0.420232 | 1.3:+65052818 | None:intergenic |
| CGACATTCGATTAAGTCAAC+TGG | 0.441693 | 1.3:-65052767 | MS.gene001679:intron |
| TGGAACAGAAGAGGATGAAA+AGG | 0.444567 | 1.3:-65054167 | MS.gene001679:CDS |
| ATAGAAACTCAAACTAATGA+AGG | 0.445370 | 1.3:-65053132 | MS.gene001679:CDS |
| CAGCAGCAGCAAGCCAAATT+GGG | 0.449148 | 1.3:-65054112 | MS.gene001679:CDS |
| AGAATGGCTACTTGAAAGTC+AGG | 0.455673 | 1.3:-65053193 | MS.gene001679:CDS |
| TTCAAAGCCAGTCTCCGAAA+AGG | 0.459349 | 1.3:-65053029 | MS.gene001679:CDS |
| TGGGGAAAACGGAGAGCAAA+TGG | 0.462093 | 1.3:-65053004 | MS.gene001679:CDS |
| GACGTCCGCTGGCACAAGAC+TGG | 0.472180 | 1.3:-65054316 | MS.gene001679:CDS |
| CATCCTCTTCTGTTCCAAGA+TGG | 0.472200 | 1.3:+65054173 | None:intergenic |
| TTGACAATTTGGGCAAGCTC+TGG | 0.472858 | 1.3:+65056723 | None:intergenic |
| CGTCGTGGTTGGTGGACAAA+AGG | 0.474826 | 1.3:-65056813 | MS.gene001679:CDS |
| GCCAGTCTCCGAAAAGGGAT+GGG | 0.488185 | 1.3:-65053023 | MS.gene001679:CDS |
| CTAAACCTATCCTCTTGAAC+GGG | 0.489073 | 1.3:-65054288 | MS.gene001679:CDS |
| GGAAGCAACTGTTATAAAAG+TGG | 0.494051 | 1.3:-65054056 | MS.gene001679:CDS |
| CATTCTAACCGAGAAAGATC+TGG | 0.494095 | 1.3:+65053210 | None:intergenic |
| ACTCATCCTCAGCGTTTACC+AGG | 0.499467 | 1.3:-65054526 | MS.gene001679:intron |
| TCAAAGCCAGTCTCCGAAAA+GGG | 0.504914 | 1.3:-65053028 | MS.gene001679:CDS |
| TTAGTTTGAGTTTCTATAGT+CGG | 0.506830 | 1.3:+65053138 | None:intergenic |
| TAAATTCATCGATGAAAGGA+TGG | 0.507800 | 1.3:+65054584 | None:intergenic |
| GTTATGCATCAATACCATCT+TGG | 0.511788 | 1.3:-65054187 | MS.gene001679:CDS |
| ATGTAGACCGTCGTGGTTGG+TGG | 0.513068 | 1.3:-65056821 | MS.gene001679:intron |
| TTAACACCTCTAGGTAATCC+AGG | 0.513694 | 1.3:+65054676 | None:intergenic |
| CCGAAAAGGGATGGGGAAAA+CGG | 0.514006 | 1.3:-65053015 | MS.gene001679:CDS |
| ACTACTCTTAAAATGGATGA+TGG | 0.516095 | 1.3:-65054559 | MS.gene001679:CDS |
| CACAGGATAGCTACATTGCG+TGG | 0.526226 | 1.3:-65052631 | MS.gene001679:CDS |
| AGCCAGTCTCCGAAAAGGGA+TGG | 0.526505 | 1.3:-65053024 | MS.gene001679:CDS |
| TCCTTCCAGTCTTGTGCCAG+CGG | 0.528576 | 1.3:+65054311 | None:intergenic |
| AATGTAGGTGTTTCACGAGA+TGG | 0.528910 | 1.3:-65054427 | MS.gene001679:intron |
| ACAGAAGAGGATGAAAAGGA+TGG | 0.529217 | 1.3:-65054163 | MS.gene001679:CDS |
| CCGAAATGTTCCTGAAACCT+CGG | 0.530415 | 1.3:-65054077 | MS.gene001679:CDS |
| TAGGTAACACAAGAGTGGCC+TGG | 0.532893 | 1.3:-65054694 | MS.gene001679:CDS |
| CATATTATCTCTTGATCAGA+TGG | 0.535616 | 1.3:+65054646 | None:intergenic |
| TTAATAGGAATTCAGCTCAC+AGG | 0.535810 | 1.3:-65052648 | MS.gene001679:intron |
| TAGAAACTCAAACTAATGAA+GGG | 0.541977 | 1.3:-65053131 | MS.gene001679:CDS |
| AGAATCTCATCATAGTCCTC+AGG | 0.542768 | 1.3:-65053957 | MS.gene001679:intron |
| CTTTATATGACTCCGGAGAG+TGG | 0.548324 | 1.3:-65054235 | MS.gene001679:CDS |
| CTTTCTGAAGCCCGTTCAAG+AGG | 0.552172 | 1.3:+65054278 | None:intergenic |
| TTGAAAGAAATCTGCGAACA+AGG | 0.555766 | 1.3:+65053047 | None:intergenic |
| GCTCTACATTTGCAGTGTCA+AGG | 0.556566 | 1.3:+65052806 | None:intergenic |
| CTCTTGAACGGGCTTCAGAA+AGG | 0.560131 | 1.3:-65054277 | MS.gene001679:CDS |
| CCAGTCTCCGAAAAGGGATG+GGG | 0.561705 | 1.3:-65053022 | MS.gene001679:CDS |
| TGAAGCCCGTTCAAGAGGAT+AGG | 0.565498 | 1.3:+65054283 | None:intergenic |
| GTCACGGAATTGGGAGTGAC+TGG | 0.565831 | 1.3:+65054031 | None:intergenic |
| CAATTTGGGCAAGCTCTGGT+AGG | 0.567523 | 1.3:+65056727 | None:intergenic |
| TGGCACTTGCGTGCAAAAGT+TGG | 0.568756 | 1.3:-65054625 | MS.gene001679:CDS |
| ACAGGATAGCTACATTGCGT+GGG | 0.570733 | 1.3:-65052630 | MS.gene001679:CDS |
| GTGATAAATTCATCGATGAA+AGG | 0.572813 | 1.3:+65054580 | None:intergenic |
| TATGGTACTTTATATGACTC+CGG | 0.573390 | 1.3:-65054242 | MS.gene001679:CDS |
| GGATCAAATTTAACACCTCT+AGG | 0.573417 | 1.3:+65054667 | None:intergenic |
| TCCGCTGGCACAAGACTGGA+AGG | 0.577786 | 1.3:-65054312 | MS.gene001679:CDS |
| AAATTCATCGATGAAAGGAT+GGG | 0.578017 | 1.3:+65054585 | None:intergenic |
| TCTCCCTTATGGCTACGTCT+GGG | 0.581507 | 1.3:-65057780 | None:intergenic |
| GAACATTGCTTCTCATTGCG+AGG | 0.584286 | 1.3:+65053998 | None:intergenic |
| ACTAAACCTATCCTCTTGAA+CGG | 0.585397 | 1.3:-65054289 | MS.gene001679:CDS |
| CTTGTATATGTAGACCGTCG+TGG | 0.591109 | 1.3:-65056828 | MS.gene001679:intron |
| GCGAGGAGGTTCAGGCGTCA+CGG | 0.600720 | 1.3:+65054015 | None:intergenic |
| AATTCACAGCAACTTGCGGA+AGG | 0.600786 | 1.3:-65053075 | MS.gene001679:CDS |
| TGACTTAATCGAATGTCGGA+AGG | 0.609614 | 1.3:+65052772 | None:intergenic |
| TTGCGTGCAAAAGTTGGTGA+AGG | 0.610943 | 1.3:-65054619 | MS.gene001679:CDS |
| CAGTTGACTTAATCGAATGT+CGG | 0.615405 | 1.3:+65052768 | None:intergenic |
| AATTCATCGATGAAAGGATG+GGG | 0.617921 | 1.3:+65054586 | None:intergenic |
| TATATGTAGACCGTCGTGGT+TGG | 0.621640 | 1.3:-65056824 | MS.gene001679:intron |
| CATTGCTTCTCATTGCGAGG+AGG | 0.622091 | 1.3:+65054001 | None:intergenic |
| ATTGAATTCACAGCAACTTG+CGG | 0.627276 | 1.3:-65053079 | MS.gene001679:CDS |
| GTTGTTAGGTAACACAAGAG+TGG | 0.628897 | 1.3:-65054699 | MS.gene001679:intron |
| AAAAGCTGAGAAAACTAACT+GGG | 0.630819 | 1.3:-65054209 | MS.gene001679:CDS |
| ATACCATCTTGGAACAGAAG+AGG | 0.631271 | 1.3:-65054176 | MS.gene001679:CDS |
| AGAAACTCAAACTAATGAAG+GGG | 0.644054 | 1.3:-65053130 | MS.gene001679:CDS |
| TGAGCATATACAGAAAGACT+AGG | 0.654781 | 1.3:+65052976 | None:intergenic |
| GATAGCTACATTGCGTGGGG+TGG | 0.669838 | 1.3:-65052626 | MS.gene001679:CDS |
| CAGGATAGCTACATTGCGTG+GGG | 0.676657 | 1.3:-65052629 | MS.gene001679:CDS |
| GAGTGGCCTGGATTACCTAG+AGG | 0.709350 | 1.3:-65054682 | MS.gene001679:CDS |
| TATATGACTCCGGAGAGTGG+AGG | 0.710802 | 1.3:-65054232 | MS.gene001679:CDS |
| TGTCCACCTGGTAAACGCTG+AGG | 0.724622 | 1.3:+65054520 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATGAATTTAATGTAA+TGG | + | chr1.3:65057662-65057681 | None:intergenic | 10.0% |
| !! | AATCATTAAGAATTATTTAG+AGG | - | chr1.3:65055019-65055038 | MS.gene001679:intron | 15.0% |
| !! | GATTTAATTGGAAATTAAAA+TGG | + | chr1.3:65052877-65052896 | None:intergenic | 15.0% |
| !! | TCTATCATTATGTAAATAAT+AGG | + | chr1.3:65054206-65054225 | None:intergenic | 15.0% |
| !! | TTAAGAATTTATTTCAATGA+AGG | + | chr1.3:65056983-65057002 | None:intergenic | 15.0% |
| !! | TTAATTTCCAATTAAATCTT+TGG | - | chr1.3:65052879-65052898 | MS.gene001679:CDS | 15.0% |
| !!! | AATAAAGCAAATAATTTTGA+AGG | + | chr1.3:65052831-65052850 | None:intergenic | 15.0% |
| !!! | ATCTTTTTCTTAATTTCAAA+TGG | - | chr1.3:65052673-65052692 | MS.gene001679:intron | 15.0% |
| !!! | ATTGCTTGTTTTTTTTTAAT+AGG | - | chr1.3:65057716-65057735 | MS.gene001679:intron | 15.0% |
| !!! | GAAATATGTTATTTAATTTC+TGG | - | chr1.3:65055322-65055341 | MS.gene001679:intron | 15.0% |
| !!! | TATATATCAGTGATATTTTA+TGG | - | chr1.3:65053894-65053913 | MS.gene001679:intron | 15.0% |
| !!! | TCTTTTTCTTAATTTCAAAT+GGG | - | chr1.3:65052674-65052693 | MS.gene001679:intron | 15.0% |
| !!! | TTAAATGCTTAAAACATTTT+TGG | + | chr1.3:65056577-65056596 | None:intergenic | 15.0% |
| !!! | TTTCAAAGTTGATATTTATT+TGG | - | chr1.3:65056918-65056937 | MS.gene001679:intron | 15.0% |
| !! | AAAACAACCAAAGATTTAAT+TGG | + | chr1.3:65052889-65052908 | None:intergenic | 20.0% |
| !! | AAAGCAGGTATTAAAAAATA+AGG | + | chr1.3:65057017-65057036 | None:intergenic | 20.0% |
| !! | AAGAACAAAATTATCAACAT+AGG | + | chr1.3:65057123-65057142 | None:intergenic | 20.0% |
| !! | AAGTATCACTGTTATAAAAA+CGG | + | chr1.3:65055511-65055530 | None:intergenic | 20.0% |
| !! | AATAAATTCAACTTATGATG+GGG | + | chr1.3:65054449-65054468 | None:intergenic | 20.0% |
| !! | AATTGGTAAAACTAATCAAA+GGG | + | chr1.3:65053416-65053435 | None:intergenic | 20.0% |
| !! | AGTTTATTGTTCAATAGATA+TGG | - | chr1.3:65052914-65052933 | MS.gene001679:CDS | 20.0% |
| !! | ATAAGAAAATTAAGACAAGT+AGG | + | chr1.3:65053844-65053863 | None:intergenic | 20.0% |
| !! | ATGTAAAAGTAAAACATGTT+TGG | + | chr1.3:65053319-65053338 | None:intergenic | 20.0% |
| !! | ATTAATGCACAAAGAATATA+TGG | + | chr1.3:65055221-65055240 | None:intergenic | 20.0% |
| !! | ATTTATCACTACTCTTAAAA+TGG | - | chr1.3:65055813-65055832 | MS.gene001679:intron | 20.0% |
| !! | CAATAAATTCAACTTATGAT+GGG | + | chr1.3:65054450-65054469 | None:intergenic | 20.0% |
| !! | CATCAAAAAAATTTAAGTGT+TGG | - | chr1.3:65055164-65055183 | MS.gene001679:intron | 20.0% |
| !! | CTTTGAATCAAATACATTAA+AGG | - | chr1.3:65055054-65055073 | MS.gene001679:intron | 20.0% |
| !! | GCTATATGATTATAAAATGT+AGG | - | chr1.3:65055937-65055956 | MS.gene001679:intron | 20.0% |
| !! | TCAATAAATTCAACTTATGA+TGG | + | chr1.3:65054451-65054470 | None:intergenic | 20.0% |
| !! | TGGTTTATTTATTATAGAGA+AGG | - | chr1.3:65052764-65052783 | MS.gene001679:intron | 20.0% |
| !!! | AAAAATGCCAATAAACTTTT+AGG | + | chr1.3:65055563-65055582 | None:intergenic | 20.0% |
| !!! | AAGCTTTATTCAAATTTGAA+TGG | - | chr1.3:65055886-65055905 | MS.gene001679:intron | 20.0% |
| !!! | AATGTTTTAAGCATTTAATG+TGG | - | chr1.3:65056579-65056598 | MS.gene001679:intron | 20.0% |
| !!! | GTGATTAATTTTGATAGTTT+TGG | - | chr1.3:65057063-65057082 | MS.gene001679:intron | 20.0% |
| !!! | TAAAAAATAAGGCATTAAGA+AGG | + | chr1.3:65057006-65057025 | None:intergenic | 20.0% |
| !!! | TATGTTATTTAATTTCTGGA+AGG | - | chr1.3:65055326-65055345 | MS.gene001679:intron | 20.0% |
| !!! | TCATTATTTGAGTTTAATAG+TGG | - | chr1.3:65052794-65052813 | MS.gene001679:CDS | 20.0% |
| !!! | TGTTGATCAAAGTTTTTATA+TGG | - | chr1.3:65052948-65052967 | MS.gene001679:CDS | 20.0% |
| !!! | TTTCAAAGTTTTATGTTGTT+AGG | - | chr1.3:65055666-65055685 | MS.gene001679:intron | 20.0% |
| ! | ACTATATACAAGACATCAAT+CGG | - | chr1.3:65055414-65055433 | MS.gene001679:intron | 25.0% |
| ! | ATACAACACGAAAATATTAG+TGG | + | chr1.3:65056459-65056478 | None:intergenic | 25.0% |
| ! | ATAGAAACTCAAACTAATGA+AGG | - | chr1.3:65057247-65057266 | MS.gene001679:intron | 25.0% |
| ! | ATGAGAAAGTAATTGATTGT+TGG | - | chr1.3:65055118-65055137 | MS.gene001679:intron | 25.0% |
| ! | ATTGGTAAAACTAATCAAAG+GGG | + | chr1.3:65053415-65053434 | None:intergenic | 25.0% |
| ! | ATTTGTATCGTTCAATTTCT+TGG | - | chr1.3:65055264-65055283 | MS.gene001679:intron | 25.0% |
| ! | CAATTACTTTCTCATTCATA+GGG | + | chr1.3:65055113-65055132 | None:intergenic | 25.0% |
| ! | CAATTGGTAAAACTAATCAA+AGG | + | chr1.3:65053417-65053436 | None:intergenic | 25.0% |
| ! | CATCACAAATAGAGAAAATT+TGG | + | chr1.3:65057695-65057714 | None:intergenic | 25.0% |
| ! | CATTATAGTAGATTCAACTA+AGG | + | chr1.3:65054004-65054023 | None:intergenic | 25.0% |
| ! | CTATAATGAAAGAAAAAGTG+AGG | - | chr1.3:65054016-65054035 | MS.gene001679:CDS | 25.0% |
| ! | CTATTGATCTATCACTTATT+TGG | + | chr1.3:65054961-65054980 | None:intergenic | 25.0% |
| ! | TAAAGAAATTCAAAAAAGCG+AGG | + | chr1.3:65052723-65052742 | None:intergenic | 25.0% |
| ! | TAGAAACTCAAACTAATGAA+GGG | - | chr1.3:65057248-65057267 | MS.gene001679:intron | 25.0% |
| ! | TATCGTGTATTACATCAAAT+GGG | + | chr1.3:65054881-65054900 | None:intergenic | 25.0% |
| ! | TCAATTACTTTCTCATTCAT+AGG | + | chr1.3:65055114-65055133 | None:intergenic | 25.0% |
| ! | TTAGAAATCTCATAATCAGA+AGG | + | chr1.3:65053288-65053307 | None:intergenic | 25.0% |
| ! | TTTGTATCGTTCAATTTCTT+GGG | - | chr1.3:65055265-65055284 | MS.gene001679:intron | 25.0% |
| !! | AAAATATGTGGTCAAGATTT+TGG | - | chr1.3:65056039-65056058 | MS.gene001679:intron | 25.0% |
| !! | AACTAGAAAAAGTGTAGATT+AGG | - | chr1.3:65053978-65053997 | MS.gene001679:CDS | 25.0% |
| !! | ATTTCGTCTAAAATCACATT+AGG | - | chr1.3:65055239-65055258 | MS.gene001679:intron | 25.0% |
| !! | CTTTATTTAATGTCCAACAA+TGG | - | chr1.3:65052844-65052863 | MS.gene001679:CDS | 25.0% |
| !! | TGATCAAAGTTTTTATATGG+CGG | - | chr1.3:65052951-65052970 | MS.gene001679:CDS | 25.0% |
| !! | TTAGTTTGAGTTTCTATAGT+CGG | + | chr1.3:65057244-65057263 | None:intergenic | 25.0% |
| !! | TTATTTAATTTCTGGAAGGA+AGG | - | chr1.3:65055330-65055349 | MS.gene001679:intron | 25.0% |
| !!! | AACACTTTTTTCCTTCTAAA+TGG | - | chr1.3:65054839-65054858 | MS.gene001679:intron | 25.0% |
| !!! | AAGTGTTGGAAAAAAAAGAA+CGG | - | chr1.3:65055178-65055197 | MS.gene001679:intron | 25.0% |
| !!! | AAGTTGATATTTATTTGGTG+TGG | - | chr1.3:65056923-65056942 | MS.gene001679:intron | 25.0% |
| !!! | ACACTTTTTTCCTTCTAAAT+GGG | - | chr1.3:65054840-65054859 | MS.gene001679:intron | 25.0% |
| !!! | ATAATTGTTTTAGAACCATG+GGG | + | chr1.3:65054636-65054655 | None:intergenic | 25.0% |
| !!! | ATTATGCTGATTTGATTAGA+AGG | - | chr1.3:65056876-65056895 | MS.gene001679:intron | 25.0% |
| !!! | GATAATTGTTTTAGAACCAT+GGG | + | chr1.3:65054637-65054656 | None:intergenic | 25.0% |
| !!! | TAGATTTTAATGTAGCATCA+TGG | + | chr1.3:65053063-65053082 | None:intergenic | 25.0% |
| !!! | TGTATGTTTTCCTTTGTTTT+TGG | - | chr1.3:65056474-65056493 | MS.gene001679:intron | 25.0% |
| !!! | TTGATTAGTTTTACCAATTG+TGG | - | chr1.3:65053417-65053436 | MS.gene001679:intron | 25.0% |
| !!! | TTTTAATACCTGCTTTGAAT+GGG | - | chr1.3:65057021-65057040 | MS.gene001679:intron | 25.0% |
| !!! | TTTTTAATACCTGCTTTGAA+TGG | - | chr1.3:65057020-65057039 | MS.gene001679:intron | 25.0% |
| AAAAGCTGAGAAAACTAACT+GGG | - | chr1.3:65056170-65056189 | MS.gene001679:intron | 30.0% | |
| AAATTCATCGATGAAAGGAT+GGG | + | chr1.3:65055797-65055816 | None:intergenic | 30.0% | |
| AAGAGATTGCACAAACAATT+AGG | - | chr1.3:65054785-65054804 | MS.gene001679:intron | 30.0% | |
| AAGCAACCGAAAAAGTTATA+TGG | - | chr1.3:65053620-65053639 | MS.gene001679:intron | 30.0% | |
| AATCTCTTGTATCCAACATT+TGG | + | chr1.3:65054773-65054792 | None:intergenic | 30.0% | |
| ACTACTCTTAAAATGGATGA+TGG | - | chr1.3:65055820-65055839 | MS.gene001679:intron | 30.0% | |
| ACTGTTGATACTAAAGTAAG+AGG | + | chr1.3:65052644-65052663 | None:intergenic | 30.0% | |
| AGAAACTCAAACTAATGAAG+GGG | - | chr1.3:65057249-65057268 | MS.gene001679:intron | 30.0% | |
| AGATCAATAGTTAGAGATAG+AGG | - | chr1.3:65054971-65054990 | MS.gene001679:intron | 30.0% | |
| AGATGTTAAACTCATAATGC+TGG | - | chr1.3:65056629-65056648 | MS.gene001679:intron | 30.0% | |
| AGCAACCGAAAAAGTTATAT+GGG | - | chr1.3:65053621-65053640 | MS.gene001679:intron | 30.0% | |
| AGTTACAATAAGAAACTGCA+TGG | + | chr1.3:65055380-65055399 | None:intergenic | 30.0% | |
| ATAAGAAACTGCATGGAAAT+AGG | + | chr1.3:65055373-65055392 | None:intergenic | 30.0% | |
| ATAAGAGTTCCACTATTACA+AGG | + | chr1.3:65053470-65053489 | None:intergenic | 30.0% | |
| ATTATATGTGTGCTGTGTTA+TGG | + | chr1.3:65054556-65054575 | None:intergenic | 30.0% | |
| ATTTATTTCAATGAAGGCAG+CGG | + | chr1.3:65056977-65056996 | None:intergenic | 30.0% | |
| CACTTAATCCTCTTTAAGTA+GGG | - | chr1.3:65054168-65054187 | MS.gene001679:CDS | 30.0% | |
| CATATTATCTCTTGATCAGA+TGG | + | chr1.3:65055736-65055755 | None:intergenic | 30.0% | |
| CATCTGATCAAGAGATAATA+TGG | - | chr1.3:65055734-65055753 | MS.gene001679:intron | 30.0% | |
| CGATAACATGTTGACAATTT+GGG | + | chr1.3:65053669-65053688 | None:intergenic | 30.0% | |
| CTATCGTGTATTACATCAAA+TGG | + | chr1.3:65054882-65054901 | None:intergenic | 30.0% | |
| CTCAAATAAAAAGCCACAAT+TGG | + | chr1.3:65053433-65053452 | None:intergenic | 30.0% | |
| CTTTCTGTATATGCTCATTT+AGG | - | chr1.3:65057409-65057428 | MS.gene001679:intron | 30.0% | |
| GAAACTGATGTGTAAGTTTA+TGG | + | chr1.3:65054689-65054708 | None:intergenic | 30.0% | |
| GAAAGGCTGTAAAAAGATTA+TGG | - | chr1.3:65056119-65056138 | MS.gene001679:intron | 30.0% | |
| GATCAATAGTTAGAGATAGA+GGG | - | chr1.3:65054972-65054991 | MS.gene001679:intron | 30.0% | |
| GATTGATGTCTTGTATATAG+TGG | + | chr1.3:65055415-65055434 | None:intergenic | 30.0% | |
| GTGATAAATTCATCGATGAA+AGG | + | chr1.3:65055802-65055821 | None:intergenic | 30.0% | |
| GTTTGAGAAAATTGGAAACA+AGG | + | chr1.3:65054244-65054263 | None:intergenic | 30.0% | |
| TAAACTTTGATGAGATGAAG+TGG | + | chr1.3:65054595-65054614 | None:intergenic | 30.0% | |
| TAAATTCATCGATGAAAGGA+TGG | + | chr1.3:65055798-65055817 | None:intergenic | 30.0% | |
| TACCTGTCCTAAAAGTTTAT+TGG | - | chr1.3:65055553-65055572 | MS.gene001679:intron | 30.0% | |
| TATCTGTGACTTCAGATATA+AGG | + | chr1.3:65055535-65055554 | None:intergenic | 30.0% | |
| TATGGTACTTTATATGACTC+CGG | - | chr1.3:65056137-65056156 | MS.gene001679:intron | 30.0% | |
| TCAGCATAATTCATTAAACC+AGG | + | chr1.3:65056866-65056885 | None:intergenic | 30.0% | |
| TCGATAACATGTTGACAATT+TGG | + | chr1.3:65053670-65053689 | None:intergenic | 30.0% | |
| TCTGACACAATATTCATTTG+TGG | - | chr1.3:65056662-65056681 | MS.gene001679:intron | 30.0% | |
| TGCTTTCAATTGTATTTCAG+TGG | - | chr1.3:65053728-65053747 | MS.gene001679:intron | 30.0% | |
| TGTTCAATAGATATGGCTTT+CGG | - | chr1.3:65052921-65052940 | MS.gene001679:CDS | 30.0% | |
| TTATATGTGTGCTGTGTTAT+GGG | + | chr1.3:65054555-65054574 | None:intergenic | 30.0% | |
| TTGGTAAAACTAATCAAAGG+GGG | + | chr1.3:65053414-65053433 | None:intergenic | 30.0% | |
| TTGGTTGACATATTACACAA+TGG | - | chr1.3:65055137-65055156 | MS.gene001679:intron | 30.0% | |
| TTGTATCGTTCAATTTCTTG+GGG | - | chr1.3:65055266-65055285 | MS.gene001679:intron | 30.0% | |
| ! | AACCAGGCAAATCAAATTTT+TGG | + | chr1.3:65056850-65056869 | None:intergenic | 30.0% |
| ! | AATAGATTCAGGAATTTTCC+TGG | + | chr1.3:65054489-65054508 | None:intergenic | 30.0% |
| ! | ACCAGGCAAATCAAATTTTT+GGG | + | chr1.3:65056849-65056868 | None:intergenic | 30.0% |
| ! | AGTGTTGGAAAAAAAAGAAC+GGG | - | chr1.3:65055179-65055198 | MS.gene001679:intron | 30.0% |
| ! | GCTTTCCCATATAACTTTTT+CGG | + | chr1.3:65053629-65053648 | None:intergenic | 30.0% |
| ! | TGTTGATAAACCCATTTAGA+AGG | + | chr1.3:65054853-65054872 | None:intergenic | 30.0% |
| !! | TAGAAGGAAAAAAGTGTTTC+TGG | + | chr1.3:65054837-65054856 | None:intergenic | 30.0% |
| !! | TTGATATTTATTTGGTGTGG+TGG | - | chr1.3:65056926-65056945 | MS.gene001679:intron | 30.0% |
| !!! | AAATCAAATTTTTGGGGTCA+CGG | + | chr1.3:65056842-65056861 | None:intergenic | 30.0% |
| !!! | GCGGTTGCAATTTTTTTTAT+TGG | - | chr1.3:65053127-65053146 | MS.gene001679:CDS | 30.0% |
| !!! | GGATAATTGTTTTAGAACCA+TGG | + | chr1.3:65054638-65054657 | None:intergenic | 30.0% |
| !!! | TTTCCTTTGTTTTTGGAAGA+GGG | - | chr1.3:65056481-65056500 | MS.gene001679:intron | 30.0% |
| !!! | TTTTCCTTTGTTTTTGGAAG+AGG | - | chr1.3:65056480-65056499 | MS.gene001679:intron | 30.0% |
| AAAGAAAAAGTGAGGTCTCT+TGG | - | chr1.3:65054024-65054043 | MS.gene001679:CDS | 35.0% | |
| AAATCTAGATGTCTTGACCT+AGG | - | chr1.3:65053076-65053095 | MS.gene001679:CDS | 35.0% | |
| AAATGGATGATCACCATTGT+TGG | + | chr1.3:65052860-65052879 | None:intergenic | 35.0% | |
| AAGTAAGAGGAAAAAGAGAG+AGG | + | chr1.3:65052631-65052650 | None:intergenic | 35.0% | |
| AAGTAGGAAACTAGACATGA+AGG | + | chr1.3:65053828-65053847 | None:intergenic | 35.0% | |
| AATTCATCGATGAAAGGATG+GGG | + | chr1.3:65055796-65055815 | None:intergenic | 35.0% | |
| ACTAAACCTATCCTCTTGAA+CGG | - | chr1.3:65056090-65056109 | MS.gene001679:intron | 35.0% | |
| AGAATTTCGTCCTATGTGAT+GGG | - | chr1.3:65054902-65054921 | MS.gene001679:intron | 35.0% | |
| AGATTCTACCAGATCTTTCT+CGG | - | chr1.3:65057161-65057180 | MS.gene001679:intron | 35.0% | |
| AGTAAGAGGAAAAAGAGAGA+GGG | + | chr1.3:65052630-65052649 | None:intergenic | 35.0% | |
| AGTAGTATGACTGGGATAAT+AGG | + | chr1.3:65054114-65054133 | None:intergenic | 35.0% | |
| AGTGTCTACAATTGGAACAA+AGG | + | chr1.3:65053375-65053394 | None:intergenic | 35.0% | |
| ATAAACTGGAGCACGAAAAA+AGG | + | chr1.3:65054422-65054441 | None:intergenic | 35.0% | |
| ATATACAAGACATCAATCGG+TGG | - | chr1.3:65055417-65055436 | MS.gene001679:intron | 35.0% | |
| ATTGAATTCACAGCAACTTG+CGG | - | chr1.3:65057300-65057319 | MS.gene001679:intron | 35.0% | |
| CCACTTAATCCTCTTTAAGT+AGG | - | chr1.3:65054167-65054186 | MS.gene001679:CDS | 35.0% | |
| CCTACTTAAAGAGGATTAAG+TGG | + | chr1.3:65054170-65054189 | None:intergenic | 35.0% | |
| CCTCTTTAAGTAGGGATTTA+AGG | - | chr1.3:65054176-65054195 | MS.gene001679:CDS | 35.0% | |
| CCTTAAATCCCTACTTAAAG+AGG | + | chr1.3:65054179-65054198 | None:intergenic | 35.0% | |
| CGCAAAATCGCATATAATCA+AGG | + | chr1.3:65056530-65056549 | None:intergenic | 35.0% | |
| CTTATCTCAGTGTCTACAAT+TGG | + | chr1.3:65053383-65053402 | None:intergenic | 35.0% | |
| GAAAAGCTGAGAAAACTAAC+TGG | - | chr1.3:65056169-65056188 | MS.gene001679:intron | 35.0% | |
| GAAACAAGGTAGATTACAAG+GGG | + | chr1.3:65054230-65054249 | None:intergenic | 35.0% | |
| GCAATCAAAGCCTATAATAC+TGG | - | chr1.3:65056000-65056019 | MS.gene001679:intron | 35.0% | |
| GCAGAAATCTCAATAGATTC+AGG | + | chr1.3:65054500-65054519 | None:intergenic | 35.0% | |
| GGAAACAAGGTAGATTACAA+GGG | + | chr1.3:65054231-65054250 | None:intergenic | 35.0% | |
| GGAAGCAACTGTTATAAAAG+TGG | - | chr1.3:65056323-65056342 | MS.gene001679:intron | 35.0% | |
| GGATCAAATTTAACACCTCT+AGG | + | chr1.3:65055715-65055734 | None:intergenic | 35.0% | |
| GGGATAATAGGTATGCATTT+GGG | + | chr1.3:65054102-65054121 | None:intergenic | 35.0% | |
| GTTAAACTCATAATGCTGGT+TGG | - | chr1.3:65056633-65056652 | MS.gene001679:intron | 35.0% | |
| GTTAGAGGAACTTTCATCTT+CGG | - | chr1.3:65054344-65054363 | MS.gene001679:CDS | 35.0% | |
| GTTATGCATCAATACCATCT+TGG | - | chr1.3:65056192-65056211 | MS.gene001679:intron | 35.0% | |
| TACTTTCTCATTCATAGGGT+TGG | + | chr1.3:65055109-65055128 | None:intergenic | 35.0% | |
| TATACAAGACATCAATCGGT+GGG | - | chr1.3:65055418-65055437 | MS.gene001679:intron | 35.0% | |
| TCTTCGATTCAGTTATGACT+GGG | + | chr1.3:65054659-65054678 | None:intergenic | 35.0% | |
| TGAGCATATACAGAAAGACT+AGG | + | chr1.3:65057406-65057425 | None:intergenic | 35.0% | |
| TGGAAACAAGGTAGATTACA+AGG | + | chr1.3:65054232-65054251 | None:intergenic | 35.0% | |
| TGGAATGTCATTGAGAAAGT+AGG | + | chr1.3:65057642-65057661 | None:intergenic | 35.0% | |
| TGGGATAATAGGTATGCATT+TGG | + | chr1.3:65054103-65054122 | None:intergenic | 35.0% | |
| TGTATCGTTCAATTTCTTGG+GGG | - | chr1.3:65055267-65055286 | MS.gene001679:intron | 35.0% | |
| TTAATAGGAATTCAGCTCAC+AGG | - | chr1.3:65057731-65057750 | MS.gene001679:intron | 35.0% | |
| TTCTTCGATTCAGTTATGAC+TGG | + | chr1.3:65054660-65054679 | None:intergenic | 35.0% | |
| TTGAAAGAAATCTGCGAACA+AGG | + | chr1.3:65057335-65057354 | None:intergenic | 35.0% | |
| TTGTGCTATCCTTGTAATAG+TGG | - | chr1.3:65053458-65053477 | MS.gene001679:intron | 35.0% | |
| ! | AGTGGAAATGATTTTACCTG+AGG | + | chr1.3:65056441-65056460 | None:intergenic | 35.0% |
| ! | CAGTTGACTTAATCGAATGT+CGG | + | chr1.3:65057614-65057633 | None:intergenic | 35.0% |
| ! | CCAGGCAAATCAAATTTTTG+GGG | + | chr1.3:65056848-65056867 | None:intergenic | 35.0% |
| ! | GATCATTCTTGCTATGTTCA+TGG | - | chr1.3:65052744-65052763 | MS.gene001679:intron | 35.0% |
| ! | TATAGGCTTTGATTGCTCTA+TGG | + | chr1.3:65055996-65056015 | None:intergenic | 35.0% |
| ! | TATGATGGGGATGAATAAAC+TGG | + | chr1.3:65054436-65054455 | None:intergenic | 35.0% |
| ! | TGATTATATGCGATTTTGCG+CGG | - | chr1.3:65056530-65056549 | MS.gene001679:intron | 35.0% |
| ! | TGCATGCTGTTTGAGAAAAT+TGG | + | chr1.3:65054252-65054271 | None:intergenic | 35.0% |
| ! | TTTTATAACAGTTGCTTCCG+AGG | + | chr1.3:65056322-65056341 | None:intergenic | 35.0% |
| !! | AAGGAAAAAAGTGTTTCTGG+AGG | + | chr1.3:65054834-65054853 | None:intergenic | 35.0% |
| !! | CACATATTTTTCGACGCTTT+CGG | + | chr1.3:65056029-65056048 | None:intergenic | 35.0% |
| !! | GTCATCTTTTTCACCCAATT+TGG | + | chr1.3:65056283-65056302 | None:intergenic | 35.0% |
| !!! | TGCCAATAAACTTTTAGGAC+AGG | + | chr1.3:65055558-65055577 | None:intergenic | 35.0% |
| !!! | TTGATAGTTTTGGTTCGTGA+TGG | - | chr1.3:65057073-65057092 | MS.gene001679:intron | 35.0% |
| AAAAAATTGCAACCGCGATC+TGG | + | chr1.3:65053123-65053142 | None:intergenic | 40.0% | |
| AAAAGAACGGGAAATGCAGT+AGG | - | chr1.3:65055191-65055210 | MS.gene001679:intron | 40.0% | |
| AACATGTGTAGATGTGGTTG+TGG | + | chr1.3:65054327-65054346 | None:intergenic | 40.0% | |
| AATGTAGGTGTTTCACGAGA+TGG | - | chr1.3:65055952-65055971 | MS.gene001679:intron | 40.0% | |
| ACACCCTCTTCCAAAAACAA+AGG | + | chr1.3:65056487-65056506 | None:intergenic | 40.0% | |
| ACAGAAGAGGATGAAAAGGA+TGG | - | chr1.3:65056216-65056235 | MS.gene001679:intron | 40.0% | |
| ACATGTGTAGATGTGGTTGT+GGG | + | chr1.3:65054326-65054345 | None:intergenic | 40.0% | |
| ACCACATCTACACATGTTAG+AGG | - | chr1.3:65054329-65054348 | MS.gene001679:CDS | 40.0% | |
| ACGAAAAAAGGCAGTACAGA+GGG | + | chr1.3:65054410-65054429 | None:intergenic | 40.0% | |
| AGAATCTCATCATAGTCCTC+AGG | - | chr1.3:65056422-65056441 | MS.gene001679:intron | 40.0% | |
| AGAATGGCTACTTGAAAGTC+AGG | - | chr1.3:65057186-65057205 | MS.gene001679:intron | 40.0% | |
| AGACTAGAGAGTAGTATGAC+TGG | + | chr1.3:65054123-65054142 | None:intergenic | 40.0% | |
| AGAGGATTAAGTGGAGTACA+TGG | + | chr1.3:65054161-65054180 | None:intergenic | 40.0% | |
| ATACCATCTTGGAACAGAAG+AGG | - | chr1.3:65056203-65056222 | MS.gene001679:intron | 40.0% | |
| ATATTGCATTTGTGCGTGTC+AGG | - | chr1.3:65053770-65053789 | MS.gene001679:intron | 40.0% | |
| CAACAGTTTGGACCAAATGT+TGG | - | chr1.3:65054758-65054777 | MS.gene001679:intron | 40.0% | |
| CAATTGGAACAAAGGAACCA+AGG | + | chr1.3:65053367-65053386 | None:intergenic | 40.0% | |
| CAGATCTTTCTCGGTTAGAA+TGG | - | chr1.3:65057170-65057189 | MS.gene001679:intron | 40.0% | |
| CAGTGTCAAGGTTGAAACTT+TGG | + | chr1.3:65057564-65057583 | None:intergenic | 40.0% | |
| CATTCTAACCGAGAAAGATC+TGG | + | chr1.3:65057172-65057191 | None:intergenic | 40.0% | |
| CCAATATCCATGTCCATGTA+AGG | + | chr1.3:65055453-65055472 | None:intergenic | 40.0% | |
| CCTTACATGGACATGGATAT+TGG | - | chr1.3:65055450-65055469 | MS.gene001679:intron | 40.0% | |
| CGACATTCGATTAAGTCAAC+TGG | - | chr1.3:65057612-65057631 | MS.gene001679:intron | 40.0% | |
| CGATATAGTTATCCAGATCG+CGG | - | chr1.3:65053108-65053127 | MS.gene001679:CDS | 40.0% | |
| CTAAACCTATCCTCTTGAAC+GGG | - | chr1.3:65056091-65056110 | MS.gene001679:intron | 40.0% | |
| CTTTCGGCTTCCAGTATTAT+AGG | + | chr1.3:65056013-65056032 | None:intergenic | 40.0% | |
| GAAATATCGGTAAGGAGAGT+AGG | - | chr1.3:65054935-65054954 | MS.gene001679:intron | 40.0% | |
| GAAGTGGACGATTTATAGCT+TGG | + | chr1.3:65054579-65054598 | None:intergenic | 40.0% | |
| GACCTGTAGAAATATCGGTA+AGG | - | chr1.3:65054927-65054946 | MS.gene001679:intron | 40.0% | |
| GACTAGAGAGTAGTATGACT+GGG | + | chr1.3:65054122-65054141 | None:intergenic | 40.0% | |
| GAGAATTTCGTCCTATGTGA+TGG | - | chr1.3:65054901-65054920 | MS.gene001679:intron | 40.0% | |
| GAGGATTAAGTGGAGTACAT+GGG | + | chr1.3:65054160-65054179 | None:intergenic | 40.0% | |
| GGGAAGACCTGTAGAAATAT+CGG | - | chr1.3:65054922-65054941 | MS.gene001679:intron | 40.0% | |
| GTTGTTAGGTAACACAAGAG+TGG | - | chr1.3:65055680-65055699 | MS.gene001679:intron | 40.0% | |
| TAATCACTCCCATTCAAAGC+AGG | + | chr1.3:65057032-65057051 | None:intergenic | 40.0% | |
| TAGGAAACTAGACATGAAGG+AGG | + | chr1.3:65053825-65053844 | None:intergenic | 40.0% | |
| TATCTTATTCGTGTCGTCCT+TGG | - | chr1.3:65053347-65053366 | MS.gene001679:intron | 40.0% | |
| TATTGGCGATCTCAAATGCT+TGG | - | chr1.3:65055467-65055486 | MS.gene001679:intron | 40.0% | |
| TCCTCTAACATGTGTAGATG+TGG | + | chr1.3:65054333-65054352 | None:intergenic | 40.0% | |
| TCTCATCTGTGATTCTGATC+AGG | - | chr1.3:65054060-65054079 | MS.gene001679:CDS | 40.0% | |
| TGACTTAATCGAATGTCGGA+AGG | + | chr1.3:65057610-65057629 | None:intergenic | 40.0% | |
| TGCGTGTCAGGTTTATTTCA+TGG | - | chr1.3:65053782-65053801 | MS.gene001679:intron | 40.0% | |
| TGGAACAGAAGAGGATGAAA+AGG | - | chr1.3:65056212-65056231 | MS.gene001679:intron | 40.0% | |
| TTAACACCTCTAGGTAATCC+AGG | + | chr1.3:65055706-65055725 | None:intergenic | 40.0% | |
| TTAAGTGGAGTACATGGGAA+TGG | + | chr1.3:65054155-65054174 | None:intergenic | 40.0% | |
| ! | CATTTGTGGTTTTCTTTGCG+CGG | - | chr1.3:65056676-65056695 | MS.gene001679:intron | 40.0% |
| ! | CGAGGATTTTTCCATGAAAG+AGG | + | chr1.3:65052705-65052724 | None:intergenic | 40.0% |
| ! | CTAATCGACTGCAATTTGCT+CGG | + | chr1.3:65053016-65053035 | None:intergenic | 40.0% |
| ! | CTCCTTACCGATATTTCTAC+AGG | + | chr1.3:65054932-65054951 | None:intergenic | 40.0% |
| ! | CTGCAATTTGCTCGGTATTA+AGG | + | chr1.3:65053008-65053027 | None:intergenic | 40.0% |
| !! | AATGGGTTTTGCCTCTTTCA+TGG | - | chr1.3:65052691-65052710 | MS.gene001679:intron | 40.0% |
| !! | CCCCAAAAATTTGATTTGCC+TGG | - | chr1.3:65056845-65056864 | MS.gene001679:intron | 40.0% |
| !! | CGAAAGCGTCGAAAAATATG+TGG | - | chr1.3:65056027-65056046 | MS.gene001679:intron | 40.0% |
| !!! | ATAGTTTTGGTTCGTGATGG+TGG | - | chr1.3:65057076-65057095 | MS.gene001679:intron | 40.0% |
| AATTCACAGCAACTTGCGGA+AGG | - | chr1.3:65057304-65057323 | MS.gene001679:intron | 45.0% | |
| ACAGGATAGCTACATTGCGT+GGG | - | chr1.3:65057749-65057768 | MS.gene001679:intron | 45.0% | |
| ACCAAGTTGTGAAGCGATTG+TGG | + | chr1.3:65053190-65053209 | None:intergenic | 45.0% | |
| ACTAGACATGAAGGAGGTTG+AGG | + | chr1.3:65053819-65053838 | None:intergenic | 45.0% | |
| AGATTTCTTAGTCTGCCCCA+TGG | - | chr1.3:65054618-65054637 | MS.gene001679:CDS | 45.0% | |
| ATATGGCGGCGATCACATTA+GGG | - | chr1.3:65052965-65052984 | MS.gene001679:CDS | 45.0% | |
| ATGGGAATGGATGAAGCAGA+AGG | + | chr1.3:65054537-65054556 | None:intergenic | 45.0% | |
| CACGAAAAAAGGCAGTACAG+AGG | + | chr1.3:65054411-65054430 | None:intergenic | 45.0% | |
| CAGTGTCAGCGTCAAGATTA+AGG | + | chr1.3:65057516-65057535 | None:intergenic | 45.0% | |
| CATCCTCTTCTGTTCCAAGA+TGG | + | chr1.3:65056209-65056228 | None:intergenic | 45.0% | |
| CCGAAATGTTCCTGAAACCT+CGG | - | chr1.3:65056302-65056321 | MS.gene001679:intron | 45.0% | |
| CCGAGGTTTCAGGAACATTT+CGG | + | chr1.3:65056305-65056324 | None:intergenic | 45.0% | |
| CGAGCAAATTGCAGTCGATT+AGG | - | chr1.3:65053014-65053033 | MS.gene001679:CDS | 45.0% | |
| CTATATCGCAATCACGACCT+AGG | + | chr1.3:65053096-65053115 | None:intergenic | 45.0% | |
| CTTGTATATGTAGACCGTCG+TGG | - | chr1.3:65053551-65053570 | MS.gene001679:intron | 45.0% | |
| CTTTATATGACTCCGGAGAG+TGG | - | chr1.3:65056144-65056163 | MS.gene001679:intron | 45.0% | |
| GAACATTGCTTCTCATTGCG+AGG | + | chr1.3:65056384-65056403 | None:intergenic | 45.0% | |
| GCAGTCGATTAGGTATGATG+TGG | - | chr1.3:65053024-65053043 | MS.gene001679:CDS | 45.0% | |
| GCATTCACCTTACATGGACA+TGG | - | chr1.3:65055443-65055462 | MS.gene001679:intron | 45.0% | |
| GCTCTACATTTGCAGTGTCA+AGG | + | chr1.3:65057576-65057595 | None:intergenic | 45.0% | |
| TAAAGCTTAGACTGTCCACC+TGG | + | chr1.3:65055874-65055893 | None:intergenic | 45.0% | |
| TACAGGTCTTCCCATCACAT+AGG | + | chr1.3:65054915-65054934 | None:intergenic | 45.0% | |
| TATATGGCGGCGATCACATT+AGG | - | chr1.3:65052964-65052983 | MS.gene001679:CDS | 45.0% | |
| TATATGTAGACCGTCGTGGT+TGG | - | chr1.3:65053555-65053574 | MS.gene001679:intron | 45.0% | |
| TCAAAGCCAGTCTCCGAAAA+GGG | - | chr1.3:65057351-65057370 | MS.gene001679:intron | 45.0% | |
| TGGGTTGCATTCACCTTACA+TGG | - | chr1.3:65055437-65055456 | MS.gene001679:intron | 45.0% | |
| TGTGTGCTGTGTTATGGGAA+TGG | + | chr1.3:65054550-65054569 | None:intergenic | 45.0% | |
| TTCAAAGCCAGTCTCCGAAA+AGG | - | chr1.3:65057350-65057369 | MS.gene001679:intron | 45.0% | |
| TTGAATGCCGTCGACAAGAA+GGG | + | chr1.3:65054741-65054760 | None:intergenic | 45.0% | |
| TTGACAATTTGGGCAAGCTC+TGG | + | chr1.3:65053659-65053678 | None:intergenic | 45.0% | |
| ! | TGAGATTTTCACAACGTGCC+AGG | - | chr1.3:65054468-65054487 | MS.gene001679:intron | 45.0% |
| !! | CATTCATAGGGTTGGCTACA+TGG | + | chr1.3:65055101-65055120 | None:intergenic | 45.0% |
| !! | TTGCGTGCAAAAGTTGGTGA+AGG | - | chr1.3:65055760-65055779 | MS.gene001679:intron | 45.0% |
| ACAGTTGCTTCCGAGGTTTC+AGG | + | chr1.3:65056315-65056334 | None:intergenic | 50.0% | |
| ACTCATCCTCAGCGTTTACC+AGG | - | chr1.3:65055853-65055872 | MS.gene001679:intron | 50.0% | |
| AGCGGCAAACATGCATCTGT+TGG | + | chr1.3:65056959-65056978 | None:intergenic | 50.0% | |
| ATGTGGTTGTGGGTCTGTCT+TGG | + | chr1.3:65054316-65054335 | None:intergenic | 50.0% | |
| CAAGAAGGGACTCAAGTGGA+TGG | + | chr1.3:65054727-65054746 | None:intergenic | 50.0% | |
| CACAGGATAGCTACATTGCG+TGG | - | chr1.3:65057748-65057767 | MS.gene001679:intron | 50.0% | |
| CAGCAGCAGCAAGCCAAATT+GGG | - | chr1.3:65056267-65056286 | MS.gene001679:intron | 50.0% | |
| CAGGATAGCTACATTGCGTG+GGG | - | chr1.3:65057750-65057769 | MS.gene001679:intron | 50.0% | |
| CATTGCTTCTCATTGCGAGG+AGG | + | chr1.3:65056381-65056400 | None:intergenic | 50.0% | |
| CCGAAAAGGGATGGGGAAAA+CGG | - | chr1.3:65057364-65057383 | MS.gene001679:intron | 50.0% | |
| CTTGAGTCCCTTCTTGTCGA+CGG | - | chr1.3:65054731-65054750 | MS.gene001679:intron | 50.0% | |
| GCCACAATCGCTTCACAACT+TGG | - | chr1.3:65053186-65053205 | MS.gene001679:CDS | 50.0% | |
| GCGGCAAACATGCATCTGTT+GGG | + | chr1.3:65056958-65056977 | None:intergenic | 50.0% | |
| GTCGACGGCATTCAACAGTT+TGG | - | chr1.3:65054746-65054765 | MS.gene001679:intron | 50.0% | |
| GTTGAATGCCGTCGACAAGA+AGG | + | chr1.3:65054742-65054761 | None:intergenic | 50.0% | |
| TAGGTAACACAAGAGTGGCC+TGG | - | chr1.3:65055685-65055704 | MS.gene001679:intron | 50.0% | |
| TATATGACTCCGGAGAGTGG+AGG | - | chr1.3:65056147-65056166 | MS.gene001679:intron | 50.0% | |
| TCGACAAGAAGGGACTCAAG+TGG | + | chr1.3:65054731-65054750 | None:intergenic | 50.0% | |
| TGAAGCCCGTTCAAGAGGAT+AGG | + | chr1.3:65056099-65056118 | None:intergenic | 50.0% | |
| TGGCACTTGCGTGCAAAAGT+TGG | - | chr1.3:65055754-65055773 | MS.gene001679:intron | 50.0% | |
| TGGGGAAAACGGAGAGCAAA+TGG | - | chr1.3:65057375-65057394 | MS.gene001679:intron | 50.0% | |
| TTCTCATTGCGAGGAGGTTC+AGG | + | chr1.3:65056375-65056394 | None:intergenic | 50.0% | |
| TTGGTTGGAGACGTTGTGAG+AGG | + | chr1.3:65054297-65054316 | None:intergenic | 50.0% | |
| ! | CAATTTGGGCAAGCTCTGGT+AGG | + | chr1.3:65053655-65053674 | None:intergenic | 50.0% |
| ! | CCGTTTTCCCCATCCCTTTT+CGG | + | chr1.3:65057367-65057386 | None:intergenic | 50.0% |
| ! | CTCTTGAACGGGCTTCAGAA+AGG | - | chr1.3:65056102-65056121 | MS.gene001679:intron | 50.0% |
| ! | CTTTTGTCCACCAACCACGA+CGG | + | chr1.3:65053568-65053587 | None:intergenic | 50.0% |
| ! | TCAGCTTTTCCTCCACTCTC+CGG | + | chr1.3:65056159-65056178 | None:intergenic | 50.0% |
| !! | AAGGAAGGCATCAGTCACAC+AGG | - | chr1.3:65055345-65055364 | MS.gene001679:intron | 50.0% |
| !! | CTTTCTGAAGCCCGTTCAAG+AGG | + | chr1.3:65056104-65056123 | None:intergenic | 50.0% |
| !! | TGGTTCGTGATGGTGGTTTG+TGG | - | chr1.3:65057083-65057102 | MS.gene001679:intron | 50.0% |
| AAGCAGAAGGCTGCAGAGAC+AGG | + | chr1.3:65054524-65054543 | None:intergenic | 55.0% | |
| AGCCAGTCTCCGAAAAGGGA+TGG | - | chr1.3:65057355-65057374 | MS.gene001679:intron | 55.0% | |
| AGGTTCAGGCGTCACGGAAT+TGG | + | chr1.3:65056361-65056380 | None:intergenic | 55.0% | |
| ATGTAGACCGTCGTGGTTGG+TGG | - | chr1.3:65053558-65053577 | MS.gene001679:intron | 55.0% | |
| CATCCTCAGCGTTTACCAGG+TGG | - | chr1.3:65055856-65055875 | MS.gene001679:intron | 55.0% | |
| CCAGCAGCAGCAAGCCAAAT+TGG | - | chr1.3:65056266-65056285 | MS.gene001679:intron | 55.0% | |
| CCAGTCTCCGAAAAGGGATG+GGG | - | chr1.3:65057357-65057376 | MS.gene001679:intron | 55.0% | |
| CGATTGTGGCAGCGACATTC+AGG | + | chr1.3:65053176-65053195 | None:intergenic | 55.0% | |
| GAGTGGCCTGGATTACCTAG+AGG | - | chr1.3:65055697-65055716 | MS.gene001679:intron | 55.0% | |
| GATAGCTACATTGCGTGGGG+TGG | - | chr1.3:65057753-65057772 | MS.gene001679:intron | 55.0% | |
| GCCAGTCTCCGAAAAGGGAT+GGG | - | chr1.3:65057356-65057375 | MS.gene001679:intron | 55.0% | |
| GGTTCAGGCGTCACGGAATT+GGG | + | chr1.3:65056360-65056379 | None:intergenic | 55.0% | |
| GGTTGTGGGTCTGTCTTGGT+TGG | + | chr1.3:65054312-65054331 | None:intergenic | 55.0% | |
| GTCACGGAATTGGGAGTGAC+TGG | + | chr1.3:65056351-65056370 | None:intergenic | 55.0% | |
| TGTCCACCTGGTAAACGCTG+AGG | + | chr1.3:65055862-65055881 | None:intergenic | 55.0% | |
| ! | TCCTTCCAGTCTTGTGCCAG+CGG | + | chr1.3:65056071-65056090 | None:intergenic | 55.0% |
| !! | AAGATTTTGGCGACGTCCGC+TGG | - | chr1.3:65056052-65056071 | MS.gene001679:intron | 55.0% |
| !! | CCAATTTGGCTTGCTGCTGC+TGG | + | chr1.3:65056269-65056288 | None:intergenic | 55.0% |
| !! | CGTCGTGGTTGGTGGACAAA+AGG | - | chr1.3:65053566-65053585 | MS.gene001679:intron | 55.0% |
| TCCGCTGGCACAAGACTGGA+AGG | - | chr1.3:65056067-65056086 | MS.gene001679:intron | 60.0% | |
| ! | CCCCATCCCTTTTCGGAGAC+TGG | + | chr1.3:65057360-65057379 | None:intergenic | 60.0% |
| GACGTCCGCTGGCACAAGAC+TGG | - | chr1.3:65056063-65056082 | MS.gene001679:intron | 65.0% | |
| GCGAGGAGGTTCAGGCGTCA+CGG | + | chr1.3:65056367-65056386 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 65052607 | 65057794 | 65052607 | ID=MS.gene001679 |
| chr1.3 | mRNA | 65052607 | 65057794 | 65052607 | ID=MS.gene001679.t1;Parent=MS.gene001679 |
| chr1.3 | exon | 65057781 | 65057794 | 65057781 | ID=MS.gene001679.t1.exon1;Parent=MS.gene001679.t1 |
| chr1.3 | CDS | 65057781 | 65057794 | 65057781 | ID=cds.MS.gene001679.t1;Parent=MS.gene001679.t1 |
| chr1.3 | exon | 65056702 | 65056837 | 65056702 | ID=MS.gene001679.t1.exon2;Parent=MS.gene001679.t1 |
| chr1.3 | CDS | 65056702 | 65056837 | 65056702 | ID=cds.MS.gene001679.t1;Parent=MS.gene001679.t1 |
| chr1.3 | exon | 65054527 | 65054713 | 65054527 | ID=MS.gene001679.t1.exon3;Parent=MS.gene001679.t1 |
| chr1.3 | CDS | 65054527 | 65054713 | 65054527 | ID=cds.MS.gene001679.t1;Parent=MS.gene001679.t1 |
| chr1.3 | exon | 65053958 | 65054442 | 65053958 | ID=MS.gene001679.t1.exon4;Parent=MS.gene001679.t1 |
| chr1.3 | CDS | 65053958 | 65054442 | 65053958 | ID=cds.MS.gene001679.t1;Parent=MS.gene001679.t1 |
| chr1.3 | exon | 65052768 | 65053238 | 65052768 | ID=MS.gene001679.t1.exon5;Parent=MS.gene001679.t1 |
| chr1.3 | CDS | 65052768 | 65053238 | 65052768 | ID=cds.MS.gene001679.t1;Parent=MS.gene001679.t1 |
| chr1.3 | exon | 65052607 | 65052663 | 65052607 | ID=MS.gene001679.t1.exon6;Parent=MS.gene001679.t1 |
| chr1.3 | CDS | 65052607 | 65052663 | 65052607 | ID=cds.MS.gene001679.t1;Parent=MS.gene001679.t1 |
| Gene Sequence |
| Protein sequence |
