AlfalfaGEDB | MS.gene00168

M. sativa cultivar XinJiangDaYe / MS.gene00168

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00168.t1	XP_003594755.1	86.2	602	61	5	1	596	1	586	2.30E-290	1007.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00168.t1	Q8GXW1	31.8	390	251	7	206	594	170	545	2.1e-50	201.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00168.t1	A2Q2X9	86.2	602	61	5	1	596	1	586	1.6e-290	1007.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene00168.t1	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00168.t1	MTR_2g034260	88.870	602	45	5	1	596	1	586	0.0	1076
MS.gene00168.t1	MTR_2g034250	84.307	599	79	4	1	596	1	587	0.0	1018
MS.gene00168.t1	MTR_2g034280	77.446	603	103	6	1	596	1	577	0.0	927
MS.gene00168.t1	MTR_7g109580	43.164	512	256	8	91	596	74	556	7.10e-134	402
MS.gene00168.t1	MTR_1g086970	43.825	502	251	10	101	596	4	480	9.74e-130	389
MS.gene00168.t1	MTR_3g065980	28.465	404	254	6	206	595	159	541	4.97e-54	193
MS.gene00168.t1	MTR_7g027190	30.221	407	248	11	205	594	286	673	2.38e-47	176
MS.gene00168.t1	MTR_4g064150	28.822	399	253	9	209	593	351	732	8.06e-44	167
MS.gene00168.t1	MTR_4g104020	28.718	390	260	9	212	594	142	520	2.37e-43	162
MS.gene00168.t1	MTR_8g442410	29.592	392	253	9	212	594	148	525	2.67e-42	160

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00168.t1	AT3G03450	31.714	391	252	7	206	595	170	546	3.61e-61	212
MS.gene00168.t1	AT5G17490	30.591	389	245	8	210	595	151	517	2.41e-55	196
MS.gene00168.t1	AT2G01570	30.457	394	248	7	206	595	211	582	3.35e-55	197
MS.gene00168.t1	AT1G14920	30.280	393	250	7	206	595	159	530	5.59e-53	189
MS.gene00168.t1	AT1G66350	29.306	389	249	5	208	595	144	507	6.61e-53	189
MS.gene00168.t1	AT5G41920	30.730	397	241	12	206	594	30	400	7.64e-46	167
MS.gene00168.t1	AT5G59450	31.362	389	247	9	214	594	222	598	7.01e-45	169
MS.gene00168.t1	AT3G46600	30.709	381	244	8	220	594	5	371	1.74e-44	162
MS.gene00168.t1	AT3G46600	30.334	389	251	8	212	594	205	579	5.24e-44	166
MS.gene00168.t1	AT3G46600	30.334	389	251	8	212	594	173	547	1.45e-43	164

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Find 82 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCATTAACTGGATGAA+GGG	0.532257	2.1:-58428835	None:intergenic
AAATCCGAAAAGGGTTACAA+TGG	0.612089	2.1:+58429408	MS.gene00168:CDS
AAATTGAGAGTAGACCGCAA+TGG	0.719135	2.1:-58429663	None:intergenic
AACTATAAATCCTATAGTAA+TGG	0.549134	2.1:+58429745	MS.gene00168:CDS
AAGAAGTTTGGTAGAATTGT+TGG	0.375164	2.1:-58428743	None:intergenic
AAGAGGTTACTACCTGATGA+AGG	0.555954	2.1:+58428807	MS.gene00168:CDS
AAGATAACGGCTATTGTGAC+TGG	0.492320	2.1:+58429485	MS.gene00168:CDS
AAGCATATAGTTGAAGACAC+TGG	0.663403	2.1:+58429524	MS.gene00168:CDS
AAGGGCTGGATTTAGATCCT+TGG	0.500832	2.1:-58429276	None:intergenic
AAGTATCATCACCAAGAACA+AGG	0.600969	2.1:+58428612	MS.gene00168:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGTTTGGTAGAATTGT+TGG	-	chr2.1:58428746-58428765	None:intergenic	30.0%
ACAAAGAATCGACAAAGAAA+CGG	+	chr2.1:58429187-58429206	MS.gene00168:CDS	30.0%
CAAAATCATTAACTGGATGA+AGG	-	chr2.1:58428839-58428858	None:intergenic	30.0%
CAGAGAAACAAAAACCAAAA+GGG	-	chr2.1:58428986-58429005	None:intergenic	30.0%
CCAAACAGAAACAGAATTAA+TGG	-	chr2.1:58430152-58430171	None:intergenic	30.0%
GACAAACAATATGCAAAAGA+TGG	+	chr2.1:58429226-58429245	MS.gene00168:CDS	30.0%
GAGTCTTTATCTTCAAAGAA+AGG	+	chr2.1:58429119-58429138	MS.gene00168:CDS	30.0%
GGTTTCCCAAAAAATATCAT+TGG	-	chr2.1:58428460-58428479	None:intergenic	30.0%
GTTGAGTTTCAATATAGTTG+AGG	+	chr2.1:58428419-58428438	MS.gene00168:CDS	30.0%
TCATGGAATTAGGAATATTG+TGG	+	chr2.1:58429922-58429941	MS.gene00168:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	58428393	58430183	58428393	ID=MS.gene00168
chr2.1	mRNA	58428393	58430183	58428393	ID=MS.gene00168.t1;Parent=MS.gene00168
chr2.1	exon	58428393	58430183	58428393	ID=MS.gene00168.t1.exon1;Parent=MS.gene00168.t1
chr2.1	CDS	58428393	58430183	58428393	ID=cds.MS.gene00168.t1;Parent=MS.gene00168.t1

Gene Sequence

>MS.gene00168

ATGGAAAACTTGTGCAATTTTGGTGAGTTGAGTTTCAATATAGTTGAGGATAAACTTAGTTCATCCAATGATATTTTTTGGGAAACCAAGAAACTTAGTGAAATGAAAAATGTTCAATTTTCTGTAGAAGAAGATCTAGGAGACTATAATGGAACTAAGTCTCTTTGCACTAATTTTGGTTTCTTTCAAGATGATCCATCACAAGAAGATGATTTCCTAAAGTATCATCACCAAGAACAAGGATCATATCAAGATTATGAAACTTTTGATAACCTACACTTTGACATGGTTCATTTTGATGAACAACAATGTCCAGCAAAAGACCCTCCACTTTGTGACACAAAAAAGGACCAACAATTCTACCAAACTTCTTTAGCACCGGTTGATATATTGAAGAACTATGGCAAATGCTTCAAGAGGTTACTACCTGATGAAGGAAAAACCCTTCATCCAGTTAATGATTTTGGTTTGATCACAGATAATGAAAATGAGAGTAAGTTGTCAACTGAAGATATCATGAAGATAGCTGGAACAAGGTTCATACAATCATCATCTTCGTCGCAATCTGCATCAGGTTTGATTCTTAATCACCCTTTTGGTTTTTGTTTCTCTGGTTTATCTGATGAAGAGAAAGAAGATGTTTCACTTGTTGAATCACTCTTAGCTTGTGCTGAGAAAGTCGGATATCAACAATATGAACGAGCTAGAAAATTGTTATCGCAAATTGAGTCTTTATCTTCAAAGAAAGGTAACCCCGTTAAGCGCGTGGTTCATTATTTTGCCGAAGCTCTTCAACAAAGAATCGACAAAGAAACGGGAAGAGTTTCTGTTTCGACAAACAATATGCAAAAGATGGGACCTTTATTTGATCCTCAAGAGGTAACCAAGGATCTAAATCCAGCCCTTGTCGCGTTTTTTGAAGATCTTCCATTTTGTAAAATTTCAATGTTCACATGTGTACAAACTTTAATAGAAAATGTAACCGATGCTAAGAAGATTCATGTCATTGATCTCGAAATCCGAAAAGGGTTACAATGGACAATCCTAATGCAAGCACTTCAATCGAGAAACAAATGTCCCCTTGAGCTTCTAAAGATAACGGCTATTGTGACTGGAAACATAGACACTTCGAAGCATATAGTTGAAGACACTGGTAAAAGATTGAAGGACTTTGCGCGATATTTGAACATACCTTTCTTATTCGATACAATTATTGTATCCGATTTATTACATCTAAGAGAAGATCTTTTCAAGATAGATTCTGAGGAAACCATTGCGGTCTACTCTCAATTTGCACTTCAAAGCAAGATTCAACAATCAGACCAACTTGAAACAATCATGAGAGTGGTTAGAACTATAAATCCTATAGTAATGGTTGTCGCGGAGATTGAAGCTAATCACAATTCTAAATCTTTTGTGAACCGTTTCATCGAAGCACTTTTTTACTTTAGTGCATTTTTCGATTGTTTTGAGGATTGTATGAAAGGTGATGAGAAGAACAGGGTGGTTTTAGAATCAAAGTATTTTGGTCATGGAATTAGGAATATTGTGGCTGAAGAAGGAGCTGAAAGAAAGAGTAGAAATGTGAAGATTGATGTGTGGAGAGCATTTTTCACAAGATTTGGAATGGTGGAAACAGAATTGAGTATGATGTCTTTGTATCAAGCTGAACTGGTGGCTAAAAGATTTCCTTGTGGAAATTCTTGCACATTTGATATGAATGGTCATTGTCTTCTTGTTGGGTGGAAAGGAACACCCATTAATTCTGTTTCTGTTTGGAAATTCATTTGA

Protein sequence

>MS.gene00168.t1

MENLCNFGELSFNIVEDKLSSSNDIFWETKKLSEMKNVQFSVEEDLGDYNGTKSLCTNFGFFQDDPSQEDDFLKYHHQEQGSYQDYETFDNLHFDMVHFDEQQCPAKDPPLCDTKKDQQFYQTSLAPVDILKNYGKCFKRLLPDEGKTLHPVNDFGLITDNENESKLSTEDIMKIAGTRFIQSSSSSQSASGLILNHPFGFCFSGLSDEEKEDVSLVESLLACAEKVGYQQYERARKLLSQIESLSSKKGNPVKRVVHYFAEALQQRIDKETGRVSVSTNNMQKMGPLFDPQEVTKDLNPALVAFFEDLPFCKISMFTCVQTLIENVTDAKKIHVIDLEIRKGLQWTILMQALQSRNKCPLELLKITAIVTGNIDTSKHIVEDTGKRLKDFARYLNIPFLFDTIIVSDLLHLREDLFKIDSEETIAVYSQFALQSKIQQSDQLETIMRVVRTINPIVMVVAEIEANHNSKSFVNRFIEALFYFSAFFDCFEDCMKGDEKNRVVLESKYFGHGIRNIVAEEGAERKSRNVKIDVWRAFFTRFGMVETELSMMSLYQAELVAKRFPCGNSCTFDMNGHCLLVGWKGTPINSVSVWKFI