AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001685

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001685.t1 MTR_1g093095 98.299 294 5 0 1 294 1 294 0.0 608
MS.gene001685.t1 MTR_1g112270 35.862 145 78 5 107 249 65 196 1.90e-20 91.7
MS.gene001685.t1 MTR_1g112270 35.862 145 78 5 107 249 76 207 2.24e-20 91.3
MS.gene001685.t1 MTR_4g059870 34.507 142 81 4 109 249 61 191 2.26e-20 91.3
MS.gene001685.t1 MTR_1g094115 36.429 140 74 5 112 249 56 182 3.47e-20 90.9
MS.gene001685.t1 MTR_1g094115 35.172 145 79 5 107 249 68 199 4.51e-20 90.5
MS.gene001685.t1 MTR_8g017210 33.333 156 89 6 109 262 85 227 7.18e-20 89.7
MS.gene001685.t1 MTR_1g016010 34.161 161 91 6 91 249 47 194 7.76e-20 89.4
MS.gene001685.t1 MTR_2g093960 35.211 142 80 4 109 249 55 185 1.40e-19 88.6
MS.gene001685.t1 MTR_2g099990 35.172 145 79 6 107 249 67 198 5.04e-19 87.0
MS.gene001685.t1 MTR_2g099990 35.211 142 77 6 110 249 1 129 3.48e-18 84.3
MS.gene001685.t1 MTR_2g090745 33.553 152 88 5 107 257 28 167 8.20e-18 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001685.t1 AT1G13290 65.854 246 60 5 23 258 12 243 1.51e-108 317
MS.gene001685.t1 AT3G57670 71.429 196 40 4 99 292 201 382 5.94e-98 293
MS.gene001685.t1 AT1G51220 55.000 260 100 5 6 264 81 324 6.83e-95 284
MS.gene001685.t1 AT3G20880 77.987 159 32 1 97 255 238 393 7.07e-94 284
MS.gene001685.t1 AT1G08290 73.810 168 38 3 99 265 164 326 5.02e-93 279
MS.gene001685.t1 AT1G34790 75.159 157 36 1 100 256 130 283 3.36e-88 265
MS.gene001685.t1 AT1G34370 41.176 153 84 5 107 255 27 177 3.33e-26 105
MS.gene001685.t1 AT1G34370 41.176 153 84 5 107 255 237 387 1.25e-25 106
MS.gene001685.t1 AT1G34370 41.176 153 84 5 107 255 237 387 1.25e-25 106
MS.gene001685.t1 AT5G22890 40.645 155 84 7 106 255 209 360 1.73e-24 101
MS.gene001685.t1 AT5G03150 35.211 142 80 4 109 249 76 206 6.15e-21 92.8
MS.gene001685.t1 AT1G55110 33.758 157 90 5 107 261 84 228 8.01e-21 92.4
MS.gene001685.t1 AT1G55110 33.758 157 90 5 107 261 84 228 8.01e-21 92.4
MS.gene001685.t1 AT1G55110 33.758 157 90 5 107 261 84 228 8.01e-21 92.4
MS.gene001685.t1 AT5G44160 32.178 202 106 8 63 257 20 197 2.44e-20 90.9
MS.gene001685.t1 AT2G02070 35.443 158 87 5 94 249 60 204 3.47e-20 90.9
MS.gene001685.t1 AT2G02070 35.443 158 87 5 94 249 60 204 3.47e-20 90.9
MS.gene001685.t1 AT2G02080 36.552 145 77 5 107 249 75 206 4.06e-20 90.5
MS.gene001685.t1 AT2G02080 36.552 145 77 5 107 249 75 206 4.06e-20 90.5
MS.gene001685.t1 AT2G02080 36.552 145 77 5 107 249 75 206 4.06e-20 90.5
MS.gene001685.t1 AT2G02080 36.552 145 77 5 107 249 75 206 4.06e-20 90.5
MS.gene001685.t1 AT3G45260 34.615 156 90 4 109 263 62 206 4.32e-20 90.1
MS.gene001685.t1 AT3G45260 34.615 156 90 4 109 263 62 206 4.32e-20 90.1
MS.gene001685.t1 AT5G60470 35.211 142 80 4 109 249 58 188 6.78e-20 89.7
MS.gene001685.t1 AT5G60470 35.211 142 80 4 109 249 63 193 7.85e-20 89.4
MS.gene001685.t1 AT5G60470 35.211 142 80 4 109 249 67 197 8.05e-20 89.4
MS.gene001685.t1 AT5G66730 34.722 144 81 4 107 249 53 184 1.10e-19 89.4
MS.gene001685.t1 AT1G14580 37.241 145 76 6 107 249 74 205 1.31e-19 89.0
MS.gene001685.t1 AT1G14580 37.241 145 76 6 107 249 74 205 1.31e-19 89.0
MS.gene001685.t1 AT1G14580 37.241 145 76 6 107 249 88 219 1.56e-19 88.6
MS.gene001685.t1 AT1G03840 31.638 177 107 6 83 257 35 199 2.79e-19 88.2
MS.gene001685.t1 AT2G02080 36.620 142 75 5 110 249 1 129 3.38e-19 87.4
MS.gene001685.t1 AT2G02080 36.620 142 75 5 110 249 1 129 3.38e-19 87.4
MS.gene001685.t1 AT3G50700 35.172 145 79 5 107 249 55 186 5.48e-19 87.0
MS.gene001685.t1 AT5G44160 34.667 150 85 5 109 257 21 158 1.19e-18 85.9
MS.gene001685.t1 AT1G03840 31.844 179 106 6 83 257 35 201 1.59e-18 85.9
MS.gene001685.t1 AT3G13810 32.051 156 94 4 107 261 86 230 2.39e-18 85.5
MS.gene001685.t1 AT3G13810 32.895 152 90 4 107 257 92 232 2.56e-18 85.1
MS.gene001685.t1 AT3G13810 32.051 156 94 4 107 261 91 235 2.63e-18 85.1
MS.gene001685.t1 AT3G13810 32.051 156 94 4 107 261 91 235 2.63e-18 85.1
MS.gene001685.t1 AT3G13810 32.051 156 94 4 107 261 72 216 2.75e-18 85.1
MS.gene001685.t1 AT3G13810 32.895 152 90 4 107 257 78 218 2.87e-18 85.1
MS.gene001685.t1 AT4G02670 34.028 144 83 4 107 249 76 208 3.79e-18 84.3
MS.gene001685.t1 AT4G02670 34.028 144 83 4 107 249 74 206 3.89e-18 84.3

Find 84 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCGAGTTTGGGAGGTATT+TGG 0.247423 1.3:-64755663 None:intergenic
CTCCCATTATTCCTCAATAT+TGG 0.256317 1.3:+64755836 MS.gene001685:CDS
AGTGAAAGTTGGATTAATTA+AGG 0.285981 1.3:-64755797 None:intergenic
GATCCAATATTGAGGAATAA+TGG 0.295991 1.3:-64755839 None:intergenic
AAAGGACCGGAGTCTCTAAA+AGG 0.306782 1.3:+64756234 MS.gene001685:CDS
GATGAAGATGATGCTGGTTT+TGG 0.319383 1.3:-64756258 None:intergenic
TGCAGACAGTGCAAGAAAAC+TGG 0.325433 1.3:-64755894 None:intergenic
TCTCCTGCTCAAATCCTTGT+TGG 0.331954 1.3:+64755865 MS.gene001685:CDS
TTCCTCTCTCTTGCTCCTCC+TGG 0.347551 1.3:+64755637 MS.gene001685:CDS
AAAGATCACGTTCGTGCGTT+TGG 0.349116 1.3:+64756534 MS.gene001685:CDS
AGAAGAATTGTGGGAAGCTT+TGG 0.351421 1.3:+64756469 MS.gene001685:CDS
AATGGGAGTGTGAGATGGTT+TGG 0.355414 1.3:-64755821 None:intergenic
TTCTCTTGTAGTGTGTTTGA+AGG 0.366292 1.3:-64756371 None:intergenic
AGGGATAGTAGTAGTAATAG+TGG 0.376112 1.3:-64755695 None:intergenic
AGAGAGGTAGTAGTAGAAAT+AGG 0.389319 1.3:-64755733 None:intergenic
ATCCAATATTGAGGAATAAT+GGG 0.396877 1.3:-64755838 None:intergenic
CACGTTCGTGCGTTTGGTAA+TGG 0.397696 1.3:+64756540 MS.gene001685:CDS
CTACATTTACAGCACAAGTA+TGG 0.418258 1.3:-64755765 None:intergenic
GATGGTTTGGAAGTGAAAGT+TGG 0.427167 1.3:-64755808 None:intergenic
TCTTTCAGTGGTCTTGCCCT+TGG 0.430630 1.3:-64756339 None:intergenic
CATTTGCTGTGAGAGGAGAT+TGG 0.436076 1.3:+64756436 MS.gene001685:CDS
TAGTAGTAATAGTGGGATGA+GGG 0.441652 1.3:-64755687 None:intergenic
TTGGGAGGTATTTGGTGGCC+AGG 0.460715 1.3:-64755655 None:intergenic
GGGGACATGGATCTCAATAT+AGG 0.462797 1.3:+64756211 MS.gene001685:CDS
TCTCTTGTAGTGTGTTTGAA+GGG 0.467920 1.3:-64756370 None:intergenic
GTAGTAGTAATAGTGGGATG+AGG 0.468089 1.3:-64755688 None:intergenic
GCTTCCCACAATTCTTCTCA+TGG 0.476053 1.3:-64756464 None:intergenic
GAAATAGGTATTTGATGCAA+GGG 0.489738 1.3:-64755718 None:intergenic
CATGTTGTTGAAACGGTTGA+AGG 0.493614 1.3:-64755923 None:intergenic
AGGAGCAAGAGAGAGGAAGA+TGG 0.499455 1.3:-64755632 None:intergenic
GGGATAGTAGTAGTAATAGT+GGG 0.503268 1.3:-64755694 None:intergenic
CGAGTTTGGGAGGTATTTGG+TGG 0.508108 1.3:-64755660 None:intergenic
CCATGTTACTGTTGTGCTGA+GGG 0.513723 1.3:+64756294 MS.gene001685:CDS
AGAAATAGGTATTTGATGCA+AGG 0.514616 1.3:-64755719 None:intergenic
GAGGGAAATCATTCGAGTGC+AGG 0.521978 1.3:+64756400 MS.gene001685:CDS
ATCTAAGCTGCTGCTGCAAG+AGG 0.522289 1.3:-64755599 None:intergenic
AACTCAAAGATTCCAATGTG+TGG 0.530905 1.3:-64756572 None:intergenic
ACAAGGATTTGAGCAGGAGA+AGG 0.531708 1.3:-64755862 None:intergenic
GGACCCATGAGAAGAATTGT+GGG 0.531894 1.3:+64756460 MS.gene001685:CDS
ATTCCAATGTGTGGGGAGCA+TGG 0.532297 1.3:-64756563 None:intergenic
CAACCGTTTCAACAACATGC+AGG 0.536317 1.3:+64755927 MS.gene001685:CDS
CATTCGAGTGCAGGAAGTGT+AGG 0.544080 1.3:+64756409 MS.gene001685:CDS
ACTCAAAGATTCCAATGTGT+GGG 0.544189 1.3:-64756571 None:intergenic
GAAACAACATAAACTATCCA+AGG 0.546681 1.3:+64756322 MS.gene001685:CDS
GAACCTGCATGTTGTTGAAA+CGG 0.548476 1.3:-64755930 None:intergenic
CTTCCCACAATTCTTCTCAT+GGG 0.550992 1.3:-64756463 None:intergenic
AGGACCCATGAGAAGAATTG+TGG 0.552247 1.3:+64756459 MS.gene001685:CDS
AGCATTGATGAAGATGATGC+TGG 0.557005 1.3:-64756264 None:intergenic
AAGGACCGGAGTCTCTAAAA+GGG 0.557565 1.3:+64756235 MS.gene001685:CDS
TTGTATGGTAGATGCATATG+TGG 0.564484 1.3:+64756190 MS.gene001685:intron
GGAGGTATTTGGTGGCCAGG+AGG 0.567766 1.3:-64755652 None:intergenic
TACATGGAAGAAGAAGAAAG+TGG 0.570369 1.3:+64756621 MS.gene001685:CDS
ATAGGTATTTGATGCAAGGG+AGG 0.571468 1.3:-64755715 None:intergenic
GGACCAACAAGGATTTGAGC+AGG 0.574385 1.3:-64755868 None:intergenic
CAAGGATTTGAGCAGGAGAA+GGG 0.578543 1.3:-64755861 None:intergenic
TGGCCATGCTCCCCACACAT+TGG 0.581176 1.3:+64756560 MS.gene001685:CDS
TAAAGTAAATGAAAATTACA+TGG 0.583660 1.3:+64756605 MS.gene001685:CDS
AGTAGTAATAGTGGGATGAG+GGG 0.585249 1.3:-64755686 None:intergenic
GCAGACAGTGCAAGAAAACT+GGG 0.587578 1.3:-64755893 None:intergenic
GGCCAGGAGGAGCAAGAGAG+AGG 0.593784 1.3:-64755639 None:intergenic
GGAATAATGGGAGTGTGAGA+TGG 0.594723 1.3:-64755826 None:intergenic
TTGCTGTGAGAGGAGATTGG+AGG 0.596970 1.3:+64756439 MS.gene001685:CDS
ATCTCAATATAGGAAAGGAC+CGG 0.597133 1.3:+64756221 MS.gene001685:CDS
AGGGTTCTGAAATCTTTCAG+TGG 0.606548 1.3:-64756351 None:intergenic
GGAGAAGGGATCCAATATTG+AGG 0.614687 1.3:-64755847 None:intergenic
ACCATGTTACTGTTGTGCTG+AGG 0.615026 1.3:+64756293 MS.gene001685:CDS
AGGAAGACATTTGCTGTGAG+AGG 0.616285 1.3:+64756429 MS.gene001685:CDS
CATGGATCTCAATATAGGAA+AGG 0.616598 1.3:+64756216 MS.gene001685:CDS
TGTATGGTAGATGCATATGT+GGG 0.620648 1.3:+64756191 MS.gene001685:intron
ACACACTACAAGAGAAAGCA+CGG 0.625692 1.3:+64756378 MS.gene001685:CDS
CCCTCAGCACAACAGTAACA+TGG 0.627644 1.3:-64756294 None:intergenic
GTAGTAATAGTGGGATGAGG+GGG 0.632310 1.3:-64755685 None:intergenic
TAGATGCATATGTGGGGACA+TGG 0.632523 1.3:+64756198 MS.gene001685:intron
ACTACAAGAGAAAGCACGGA+GGG 0.635203 1.3:+64756382 MS.gene001685:CDS
AGTATGGTCATGGTGAAGAG+AGG 0.640967 1.3:-64755749 None:intergenic
CTCAAAGATTCCAATGTGTG+GGG 0.641103 1.3:-64756570 None:intergenic
TAGGTATTTGATGCAAGGGA+GGG 0.641902 1.3:-64755714 None:intergenic
AAACAACATAAACTATCCAA+GGG 0.649476 1.3:+64756323 MS.gene001685:CDS
TTACAGCACAAGTATGGTCA+TGG 0.652632 1.3:-64755759 None:intergenic
ACAGTGCAAGAAAACTGGGT+AGG 0.667615 1.3:-64755889 None:intergenic
AAAACTGGGTAGGACCAACA+AGG 0.677453 1.3:-64755879 None:intergenic
GTACTGATGATGAGTTTGCA+TGG 0.690956 1.3:-64755554 None:intergenic
CACTACAAGAGAAAGCACGG+AGG 0.743501 1.3:+64756381 MS.gene001685:CDS
GTATGGTAGATGCATATGTG+GGG 0.763722 1.3:+64756192 MS.gene001685:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGGATAAAAATATAATAA+TGG - chr1.3:64755958-64755977 None:intergenic 10.0%
!! AAACATGATTCATATATATA+TGG + chr1.3:64756145-64756164 MS.gene001685:intron 15.0%
!! CTAATGAATGATTAATTTAA+AGG - chr1.3:64756047-64756066 None:intergenic 15.0%
!! TAAAGTAAATGAAAATTACA+TGG + chr1.3:64756605-64756624 MS.gene001685:CDS 15.0%
!! TCATGATATAGTAAAAATAA+AGG - chr1.3:64755976-64755995 None:intergenic 15.0%
!! TATGATATTGTTGTATTGTA+TGG + chr1.3:64756175-64756194 MS.gene001685:intron 20.0%
! AAACAACATAAACTATCCAA+GGG + chr1.3:64756323-64756342 MS.gene001685:CDS 25.0%
! AGTGAAAGTTGGATTAATTA+AGG - chr1.3:64755800-64755819 None:intergenic 25.0%
! ATCCAATATTGAGGAATAAT+GGG - chr1.3:64755841-64755860 None:intergenic 25.0%
! GAATGATTAATTTAAAGGCA+AGG - chr1.3:64756042-64756061 None:intergenic 25.0%
AGAAATAGGTATTTGATGCA+AGG - chr1.3:64755722-64755741 None:intergenic 30.0%
AGCTCAATATGATTCATTCA+TGG - chr1.3:64756109-64756128 None:intergenic 30.0%
GAAACAACATAAACTATCCA+AGG + chr1.3:64756322-64756341 MS.gene001685:CDS 30.0%
GAAATAGGTATTTGATGCAA+GGG - chr1.3:64755721-64755740 None:intergenic 30.0%
GATCCAATATTGAGGAATAA+TGG - chr1.3:64755842-64755861 None:intergenic 30.0%
TCATTCATGGAAGAAAAGTA+AGG - chr1.3:64756096-64756115 None:intergenic 30.0%
!! TTGGAATCTTTGAGTTTTGA+TGG + chr1.3:64756579-64756598 MS.gene001685:CDS 30.0%
AACTCAAAGATTCCAATGTG+TGG - chr1.3:64756575-64756594 None:intergenic 35.0%
ACTCAAAGATTCCAATGTGT+GGG - chr1.3:64756574-64756593 None:intergenic 35.0%
AGAGAGGTAGTAGTAGAAAT+AGG - chr1.3:64755736-64755755 None:intergenic 35.0%
AGGGATAGTAGTAGTAATAG+TGG - chr1.3:64755698-64755717 None:intergenic 35.0%
ATCTCAATATAGGAAAGGAC+CGG + chr1.3:64756221-64756240 MS.gene001685:CDS 35.0%
CATGGATCTCAATATAGGAA+AGG + chr1.3:64756216-64756235 MS.gene001685:CDS 35.0%
CTACATTTACAGCACAAGTA+TGG - chr1.3:64755768-64755787 None:intergenic 35.0%
CTCCCATTATTCCTCAATAT+TGG + chr1.3:64755836-64755855 MS.gene001685:CDS 35.0%
GGGATAGTAGTAGTAATAGT+GGG - chr1.3:64755697-64755716 None:intergenic 35.0%
TACATGGAAGAAGAAGAAAG+TGG + chr1.3:64756621-64756640 MS.gene001685:CDS 35.0%
TCTCTTGTAGTGTGTTTGAA+GGG - chr1.3:64756373-64756392 None:intergenic 35.0%
TGTATGGTAGATGCATATGT+GGG + chr1.3:64756191-64756210 MS.gene001685:intron 35.0%
TTCTCTTGTAGTGTGTTTGA+AGG - chr1.3:64756374-64756393 None:intergenic 35.0%
TTGTATGGTAGATGCATATG+TGG + chr1.3:64756190-64756209 MS.gene001685:intron 35.0%
! TAGTAGTAATAGTGGGATGA+GGG - chr1.3:64755690-64755709 None:intergenic 35.0%
!!! AAGCTTTGGTTTTGTATCTG+TGG + chr1.3:64756483-64756502 MS.gene001685:CDS 35.0%
ACACACTACAAGAGAAAGCA+CGG + chr1.3:64756378-64756397 MS.gene001685:CDS 40.0%
AGAAGAATTGTGGGAAGCTT+TGG + chr1.3:64756469-64756488 MS.gene001685:CDS 40.0%
ATAGGTATTTGATGCAAGGG+AGG - chr1.3:64755718-64755737 None:intergenic 40.0%
CATGTTGTTGAAACGGTTGA+AGG - chr1.3:64755926-64755945 None:intergenic 40.0%
CTCAAAGATTCCAATGTGTG+GGG - chr1.3:64756573-64756592 None:intergenic 40.0%
CTTCCCACAATTCTTCTCAT+GGG - chr1.3:64756466-64756485 None:intergenic 40.0%
GAACCTGCATGTTGTTGAAA+CGG - chr1.3:64755933-64755952 None:intergenic 40.0%
GTATGGTAGATGCATATGTG+GGG + chr1.3:64756192-64756211 MS.gene001685:intron 40.0%
TAGGTATTTGATGCAAGGGA+GGG - chr1.3:64755717-64755736 None:intergenic 40.0%
TTACAGCACAAGTATGGTCA+TGG - chr1.3:64755762-64755781 None:intergenic 40.0%
! AGTAGTAATAGTGGGATGAG+GGG - chr1.3:64755689-64755708 None:intergenic 40.0%
! GATGGTTTGGAAGTGAAAGT+TGG - chr1.3:64755811-64755830 None:intergenic 40.0%
! GTAGTAGTAATAGTGGGATG+AGG - chr1.3:64755691-64755710 None:intergenic 40.0%
!! AGCATTGATGAAGATGATGC+TGG - chr1.3:64756267-64756286 None:intergenic 40.0%
!! AGGGTTCTGAAATCTTTCAG+TGG - chr1.3:64756354-64756373 None:intergenic 40.0%
!!! GATGAAGATGATGCTGGTTT+TGG - chr1.3:64756261-64756280 None:intergenic 40.0%
AAAACTGGGTAGGACCAACA+AGG - chr1.3:64755882-64755901 None:intergenic 45.0%
AAAGATCACGTTCGTGCGTT+TGG + chr1.3:64756534-64756553 MS.gene001685:CDS 45.0%
AAAGGACCGGAGTCTCTAAA+AGG + chr1.3:64756234-64756253 MS.gene001685:CDS 45.0%
ACAAGGATTTGAGCAGGAGA+AGG - chr1.3:64755865-64755884 None:intergenic 45.0%
ACAGTGCAAGAAAACTGGGT+AGG - chr1.3:64755892-64755911 None:intergenic 45.0%
ACCATGTTACTGTTGTGCTG+AGG + chr1.3:64756293-64756312 MS.gene001685:CDS 45.0%
AGGACCCATGAGAAGAATTG+TGG + chr1.3:64756459-64756478 MS.gene001685:CDS 45.0%
AGTATGGTCATGGTGAAGAG+AGG - chr1.3:64755752-64755771 None:intergenic 45.0%
CAACCGTTTCAACAACATGC+AGG + chr1.3:64755927-64755946 MS.gene001685:CDS 45.0%
CAAGGATTTGAGCAGGAGAA+GGG - chr1.3:64755864-64755883 None:intergenic 45.0%
CCATGTTACTGTTGTGCTGA+GGG + chr1.3:64756294-64756313 MS.gene001685:CDS 45.0%
GCAGACAGTGCAAGAAAACT+GGG - chr1.3:64755896-64755915 None:intergenic 45.0%
GCTTCCCACAATTCTTCTCA+TGG - chr1.3:64756467-64756486 None:intergenic 45.0%
GGACCCATGAGAAGAATTGT+GGG + chr1.3:64756460-64756479 MS.gene001685:CDS 45.0%
GGAGAAGGGATCCAATATTG+AGG - chr1.3:64755850-64755869 None:intergenic 45.0%
GGGGACATGGATCTCAATAT+AGG + chr1.3:64756211-64756230 MS.gene001685:CDS 45.0%
TAGATGCATATGTGGGGACA+TGG + chr1.3:64756198-64756217 MS.gene001685:intron 45.0%
TCTCCTGCTCAAATCCTTGT+TGG + chr1.3:64755865-64755884 MS.gene001685:CDS 45.0%
TGCAGACAGTGCAAGAAAAC+TGG - chr1.3:64755897-64755916 None:intergenic 45.0%
! AAGGACCGGAGTCTCTAAAA+GGG + chr1.3:64756235-64756254 MS.gene001685:CDS 45.0%
! AATGGGAGTGTGAGATGGTT+TGG - chr1.3:64755824-64755843 None:intergenic 45.0%
! ACTACAAGAGAAAGCACGGA+GGG + chr1.3:64756382-64756401 MS.gene001685:CDS 45.0%
! GGAATAATGGGAGTGTGAGA+TGG - chr1.3:64755829-64755848 None:intergenic 45.0%
! GTAGTAATAGTGGGATGAGG+GGG - chr1.3:64755688-64755707 None:intergenic 45.0%
!! AGGAAGACATTTGCTGTGAG+AGG + chr1.3:64756429-64756448 MS.gene001685:CDS 45.0%
!! CATTTGCTGTGAGAGGAGAT+TGG + chr1.3:64756436-64756455 MS.gene001685:CDS 45.0%
!! TTTGGCCCTTTTAGAGACTC+CGG - chr1.3:64756243-64756262 None:intergenic 45.0%
AGGAGCAAGAGAGAGGAAGA+TGG - chr1.3:64755635-64755654 None:intergenic 50.0%
ATCTAAGCTGCTGCTGCAAG+AGG - chr1.3:64755602-64755621 None:intergenic 50.0%
ATTCCAATGTGTGGGGAGCA+TGG - chr1.3:64756566-64756585 None:intergenic 50.0%
CACGTTCGTGCGTTTGGTAA+TGG + chr1.3:64756540-64756559 MS.gene001685:CDS 50.0%
CCCTCAGCACAACAGTAACA+TGG - chr1.3:64756297-64756316 None:intergenic 50.0%
GAGGGAAATCATTCGAGTGC+AGG + chr1.3:64756400-64756419 MS.gene001685:CDS 50.0%
GGACCAACAAGGATTTGAGC+AGG - chr1.3:64755871-64755890 None:intergenic 50.0%
TTGCTGTGAGAGGAGATTGG+AGG + chr1.3:64756439-64756458 MS.gene001685:CDS 50.0%
! CACTACAAGAGAAAGCACGG+AGG + chr1.3:64756381-64756400 MS.gene001685:CDS 50.0%
! CATTCGAGTGCAGGAAGTGT+AGG + chr1.3:64756409-64756428 MS.gene001685:CDS 50.0%
! TCTTTCAGTGGTCTTGCCCT+TGG - chr1.3:64756342-64756361 None:intergenic 50.0%
!! CGAGTTTGGGAGGTATTTGG+TGG - chr1.3:64755663-64755682 None:intergenic 50.0%
!! GTGCGAGTTTGGGAGGTATT+TGG - chr1.3:64755666-64755685 None:intergenic 50.0%
TTCCTCTCTCTTGCTCCTCC+TGG + chr1.3:64755637-64755656 MS.gene001685:CDS 55.0%
!! TTGGGAGGTATTTGGTGGCC+AGG - chr1.3:64755658-64755677 None:intergenic 55.0%
TGGCCATGCTCCCCACACAT+TGG + chr1.3:64756560-64756579 MS.gene001685:CDS 60.0%
! GGATGAGGGGGTGCGAGTTT+GGG - chr1.3:64755676-64755695 None:intergenic 60.0%
!! GGAGGTATTTGGTGGCCAGG+AGG - chr1.3:64755655-64755674 None:intergenic 60.0%
GGCCAGGAGGAGCAAGAGAG+AGG - chr1.3:64755642-64755661 None:intergenic 65.0%
! GGGATGAGGGGGTGCGAGTT+TGG - chr1.3:64755677-64755696 None:intergenic 65.0%
! TGAGGGGGTGCGAGTTTGGG+AGG - chr1.3:64755673-64755692 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 64755556 64756692 64755556 ID=MS.gene001685
chr1.3 mRNA 64755556 64756692 64755556 ID=MS.gene001685.t1;Parent=MS.gene001685
chr1.3 exon 64755556 64755948 64755556 ID=MS.gene001685.t1.exon1;Parent=MS.gene001685.t1
chr1.3 CDS 64755556 64755948 64755556 ID=cds.MS.gene001685.t1;Parent=MS.gene001685.t1
chr1.3 exon 64756201 64756692 64756201 ID=MS.gene001685.t1.exon2;Parent=MS.gene001685.t1
chr1.3 CDS 64756201 64756692 64756201 ID=cds.MS.gene001685.t1;Parent=MS.gene001685.t1
Gene Sequence

>MS.gene001685

ATGCAAACTCATCATCAGTACTACTCATTCTCTTGTGAGAGTGCCTCTTGCAGCAGCAGCTTAGATGATGAAGATTCCATCTTCCTCTCTCTTGCTCCTCCTGGCCACCAAATACCTCCCAAACTCGCACCCCCTCATCCCACTATTACTACTACTATCCCTCCCTTGCATCAAATACCTATTTCTACTACTACCTCTCTTCACCATGACCATACTTGTGCTGTAAATGTAGCACTTAATGCCTTAATTAATCCAACTTTCACTTCCAAACCATCTCACACTCCCATTATTCCTCAATATTGGATCCCTTCTCCTGCTCAAATCCTTGTTGGTCCTACCCAGTTTTCTTGCACTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGGTTCATCCATTATTATATTTTTATCCTTTATTTTTACTATATCATGACTAAATATCTGATACAACATTTTTCTCTCATATGAAACATAAACCTTGCCTTTAAATTAATCATTCATTAGCACTAATATAGTGTCATTTTTGTGCACCTTACTTTTCTTCCATGAATGAATCATATTGAGCTTACTATATTAATATCAAAACATGATTCATATATATATGGTACTAGTTATGATATTGTTGTATTGTATGGTAGATGCATATGTGGGGACATGGATCTCAATATAGGAAAGGACCGGAGTCTCTAAAAGGGCCAAAACCAGCATCATCTTCATCAATGCTGAAACTACCATGTTACTGTTGTGCTGAGGGTTGCAGAAACAACATAAACTATCCAAGGGCAAGACCACTGAAAGATTTCAGAACCCTTCAAACACACTACAAGAGAAAGCACGGAGGGAAATCATTCGAGTGCAGGAAGTGTAGGAAGACATTTGCTGTGAGAGGAGATTGGAGGACCCATGAGAAGAATTGTGGGAAGCTTTGGTTTTGTATCTGTGGTTCTGATTTCAAACACAAAAGATCACTAAAAGATCACGTTCGTGCGTTTGGTAATGGCCATGCTCCCCACACATTGGAATCTTTGAGTTTTGATGGACATAAAGTAAATGAAAATTACATGGAAGAAGAAGAAAGTGGAAGTGAAGATGAAGACAATAACAGTGAAGTTGTTTTTAGTTTGAATTAA
Protein sequence

>MS.gene001685.t1

MQTHHQYYSFSCESASCSSSLDDEDSIFLSLAPPGHQIPPKLAPPHPTITTTIPPLHQIPISTTTSLHHDHTCAVNVALNALINPTFTSKPSHTPIIPQYWIPSPAQILVGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGPESLKGPKPASSSSMLKLPCYCCAEGCRNNINYPRARPLKDFRTLQTHYKRKHGGKSFECRKCRKTFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHTLESLSFDGHKVNENYMEEEESGSEDEDNNSEVVFSLN