AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001722

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001722.t1 MTR_1g492790 97.041 507 8 3 1 506 1 501 0.0 1024
MS.gene001722.t1 MTR_1g060990 39.461 408 181 15 10 403 27 382 8.91e-74 242
MS.gene001722.t1 MTR_1g098900 34.853 307 153 10 118 384 56 355 1.27e-41 158
MS.gene001722.t1 MTR_1g098900 40.541 111 62 3 99 208 436 543 4.95e-19 90.9
MS.gene001722.t1 MTR_6g035370 61.957 92 34 1 118 209 54 144 2.65e-31 128
MS.gene001722.t1 MTR_6g035370 44.330 97 52 2 115 210 460 555 1.17e-18 89.7
MS.gene001722.t1 MTR_1g098870 56.604 106 45 1 100 205 36 140 5.48e-30 124
MS.gene001722.t1 MTR_1g098870 47.525 101 51 2 111 210 364 463 4.33e-19 90.9
MS.gene001722.t1 MTR_2g026725 27.193 228 116 8 308 493 114 333 3.77e-14 74.3
MS.gene001722.t1 MTR_2g026725 39.785 93 54 2 114 205 257 348 2.80e-13 71.6
MS.gene001722.t1 MTR_7g114860 41.237 97 46 3 119 205 381 476 2.08e-13 72.8
MS.gene001722.t1 MTR_1g081180 45.122 82 42 2 111 190 410 490 6.69e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001722.t1 AT5G03680 42.455 391 176 9 119 482 119 487 1.75e-85 275
MS.gene001722.t1 AT3G10000 38.525 366 194 11 40 400 15 354 1.15e-64 218
MS.gene001722.t1 AT3G10000 36.612 366 191 12 40 400 15 344 2.74e-56 195
MS.gene001722.t1 AT1G76890 31.696 448 215 12 115 489 37 466 1.76e-49 179
MS.gene001722.t1 AT1G76890 40.000 160 78 8 89 234 360 515 1.50e-19 92.4
MS.gene001722.t1 AT1G76880 54.701 117 46 2 98 214 46 155 8.54e-31 126
MS.gene001722.t1 AT1G76880 45.361 97 51 2 115 210 404 499 8.28e-18 87.0
MS.gene001722.t1 AT1G33240 44.318 88 47 2 119 205 435 521 2.87e-15 79.3
MS.gene001722.t1 AT1G33240 44.318 88 47 2 119 205 435 521 3.11e-15 79.0
MS.gene001722.t1 AT1G33240 44.318 88 47 2 119 205 396 482 4.06e-15 78.6
MS.gene001722.t1 AT5G28300 37.288 118 56 5 103 209 449 559 4.43e-13 72.0

Find 105 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGGCTCTTACTCTTATT+TGG 0.155961 1.3:+64378335 None:intergenic
TTGTTGTATCATTTGCTTCT+TGG 0.177243 1.3:+64378318 None:intergenic
TGCATTTCTTTCCACTTCTT+TGG 0.203428 1.3:+64379026 None:intergenic
AGGATAATGGCTGAGGAATT+TGG 0.204963 1.3:-64379052 MS.gene001722:CDS
CCTTGTGGAATGAAATTTCT+AGG 0.236619 1.3:-64380066 MS.gene001722:intron
GAACATCAAGTAAGAGAAAA+AGG 0.239292 1.3:-64378206 MS.gene001722:CDS
AGGTGAAAGGATGGTTTATA+TGG 0.259177 1.3:-64378153 MS.gene001722:CDS
GATATTTGGATGATGGAGTT+TGG 0.262012 1.3:-64378184 MS.gene001722:CDS
AAACACAAGGCCTTGGTGTT+TGG 0.270837 1.3:-64378045 MS.gene001722:CDS
GAGCTGAGTGCAAGAAAATA+TGG 0.284773 1.3:-64378115 MS.gene001722:CDS
AACACAAGGCCTTGGTGTTT+GGG 0.305639 1.3:-64378044 MS.gene001722:CDS
TCTACTAGCTTTACCTTCCT+TGG 0.314459 1.3:+64378964 None:intergenic
GATCTTCTTGTTTAGGATAA+TGG 0.314988 1.3:-64379065 MS.gene001722:intron
TGGTTTATATGGGATTTAAT+AGG 0.331668 1.3:-64378142 MS.gene001722:CDS
ATAGGGTCATAGGAATAATT+TGG 0.333734 1.3:+64380382 None:intergenic
ATCAAGAAATACATGAACTT+TGG 0.336932 1.3:-64378442 MS.gene001722:CDS
GGATAATGGCTGAGGAATTT+GGG 0.344397 1.3:-64379051 MS.gene001722:CDS
GGTTTAGAAACTTCTGATAA+AGG 0.359679 1.3:-64380205 MS.gene001722:CDS
AAAACATCACCAACTATCAT+AGG 0.369956 1.3:+64380364 None:intergenic
GAGAAGATGAGTGACCTATA+TGG 0.371968 1.3:-64380511 None:intergenic
ATATTTGGATGATGGAGTTT+GGG 0.376772 1.3:-64378183 MS.gene001722:CDS
GATGGAGTTTGGGATGAAAT+AGG 0.383462 1.3:-64378173 MS.gene001722:CDS
TCAAGAAATACATGAACTTT+GGG 0.384682 1.3:-64378441 MS.gene001722:CDS
GTAGCAACAAAGGAAGCATT+TGG 0.401281 1.3:+64378845 None:intergenic
GCAGCTATAGTGGTATTTGT+AGG 0.401800 1.3:+64380289 None:intergenic
GAAGTTGTAAGAAAACATAT+TGG 0.406391 1.3:-64378374 MS.gene001722:CDS
TCCTATGACCCTATGATAGT+TGG 0.417353 1.3:-64380373 MS.gene001722:CDS
AAGTTGTAAGAAAACATATT+GGG 0.418479 1.3:-64378373 MS.gene001722:CDS
TAGCAACAAAGGAAGCATTT+GGG 0.426061 1.3:+64378846 None:intergenic
GAGGCATGAGAGTTTGTGTT+TGG 0.435521 1.3:+64378887 None:intergenic
TTTCAAATTTGATACAACTA+AGG 0.436534 1.3:-64378238 MS.gene001722:CDS
GAACCACCACCTTGTTTGTA+TGG 0.437886 1.3:-64380427 MS.gene001722:CDS
AGAAAGGGCAAAGTGGTCAT+AGG 0.438060 1.3:-64378640 MS.gene001722:CDS
ATATTAGTATGTCTCTTAGA+AGG 0.438578 1.3:-64378088 MS.gene001722:CDS
TATATGGGATTTAATAGGAA+TGG 0.452119 1.3:-64378137 MS.gene001722:CDS
GATCCTCCGGTAGCCCATAT+AGG 0.456344 1.3:+64380497 None:intergenic
ACCAACTATCATAGGGTCAT+AGG 0.456713 1.3:+64380372 None:intergenic
ATATTATCCACACTTTCAAA+AGG 0.458934 1.3:+64378284 None:intergenic
GCTTCTACTGCATTCTGTGT+AGG 0.459654 1.3:-64380226 MS.gene001722:CDS
TATTCATAGATGGACAGAAA+TGG 0.466542 1.3:-64378264 MS.gene001722:CDS
AGAAGATGAGTGACCTATAT+GGG 0.473607 1.3:-64380510 None:intergenic
ATTAACCAAGAAAATACTAA+TGG 0.483532 1.3:-64378803 MS.gene001722:CDS
ATCAACCGCCGGAGATCCTC+CGG 0.484296 1.3:+64380484 None:intergenic
TTATTGAGACTCAAGATGCT+TGG 0.485535 1.3:-64378556 MS.gene001722:CDS
ATGAAGTCGTCGAAGGAGAA+AGG 0.490837 1.3:-64378656 MS.gene001722:CDS
AAACAAGGTGGTGGTTCTGC+TGG 0.491751 1.3:+64380433 None:intergenic
GGTGAAAGGATGGTTTATAT+GGG 0.497182 1.3:-64378152 MS.gene001722:CDS
GGATGAAATAGGTGAAAGGA+TGG 0.499715 1.3:-64378162 MS.gene001722:CDS
GTGTGGATAATATTCATAGA+TGG 0.500320 1.3:-64378274 MS.gene001722:CDS
CTTGTTTAGGATAATGGCTG+AGG 0.502416 1.3:-64379059 MS.gene001722:intron
ATAGGAGGGCAAGGAAAAGT+TGG 0.504848 1.3:-64378622 MS.gene001722:CDS
ACTTCTGATAAAGGATGGCT+TGG 0.509259 1.3:-64380196 MS.gene001722:CDS
TATTATCCACACTTTCAAAA+GGG 0.515340 1.3:+64378285 None:intergenic
TTGATTCATGTAACAACAGA+TGG 0.515630 1.3:-64380168 MS.gene001722:CDS
TAGAAACTTCTGATAAAGGA+TGG 0.515925 1.3:-64380201 MS.gene001722:CDS
CAGCTATAGTGGTATTTGTA+GGG 0.519351 1.3:+64380290 None:intergenic
TAGCATCAAAGGAAGAAGAA+AGG 0.522634 1.3:-64378490 MS.gene001722:CDS
TGAGACTCAAGATGCTTGGA+TGG 0.522893 1.3:-64378552 MS.gene001722:CDS
AGACAGCTTGAAGCAATATG+TGG 0.533898 1.3:-64378914 MS.gene001722:CDS
TGAAGTCGTCGAAGGAGAAA+GGG 0.536001 1.3:-64378655 MS.gene001722:CDS
TTAGACTTTGTGAATACTTG+TGG 0.538073 1.3:+64378756 None:intergenic
AGAACAAGAGATAGCATCAA+AGG 0.542656 1.3:-64378501 MS.gene001722:CDS
GGAAGAGAAAAGAGTCAATG+AGG 0.550829 1.3:-64378469 MS.gene001722:CDS
AGAGAAAGAGTCTCTTGTCT+AGG 0.553492 1.3:+64380145 None:intergenic
ATGGGCTACCGGAGGATCTC+CGG 0.559641 1.3:-64380492 MS.gene001722:CDS
AAACATCACCAACTATCATA+GGG 0.561437 1.3:+64380365 None:intergenic
TTGAGTTTGAGTAGCAACAA+AGG 0.562015 1.3:+64378835 None:intergenic
AAGGGCAAAGTGGTCATAGG+AGG 0.562963 1.3:-64378637 MS.gene001722:CDS
GAGTGACCTATATGGGCTAC+CGG 0.564245 1.3:-64380503 MS.gene001722:CDS
GGTATTTGTAGGGTTAACAG+TGG 0.564956 1.3:+64380300 None:intergenic
GGTAAAGCTAGTAGACAAGA+TGG 0.568681 1.3:-64378956 MS.gene001722:CDS
CCTAGAAATTTCATTCCACA+AGG 0.573860 1.3:+64380066 None:intergenic
TCATAGGAATAATTTGGTGG+AGG 0.577820 1.3:+64380388 None:intergenic
GAATTTGGGTACCAAAGAAG+TGG 0.582190 1.3:-64379037 MS.gene001722:CDS
CAGTGGAGGAATAGTCATAG+TGG 0.586600 1.3:+64380317 None:intergenic
TTGATGATGTTATCAACCGC+CGG 0.588660 1.3:+64380473 None:intergenic
AGGGCAAGGAAAAGTTGGAG+AGG 0.591096 1.3:-64378617 MS.gene001722:CDS
ATTTGTAGGGTTAACAGTGG+AGG 0.594970 1.3:+64380303 None:intergenic
AGCTGAGTGCAAGAAAATAT+GGG 0.595363 1.3:-64378114 MS.gene001722:CDS
AGCAACAAAGGAAGCATTTG+GGG 0.599234 1.3:+64378847 None:intergenic
TTTGGGATGAAATAGGTGAA+AGG 0.600563 1.3:-64378166 MS.gene001722:CDS
TATTACAAGAAGACCAAGGA+AGG 0.601931 1.3:-64378977 MS.gene001722:CDS
GGGTCATAGGAATAATTTGG+TGG 0.603660 1.3:+64380385 None:intergenic
AAGTTGGAGAGGTAAAGTTG+AGG 0.607935 1.3:-64378606 MS.gene001722:CDS
ATAATCAGAAAGCACCCTTG+TGG 0.619380 1.3:-64380081 MS.gene001722:CDS
AAAGTGGTCATAGGAGGGCA+AGG 0.623960 1.3:-64378631 MS.gene001722:CDS
GGTGAGTGAAGCTACTACGA+GGG 0.624158 1.3:+64380338 None:intergenic
CTTAGAAGGACAGTGGACTG+TGG 0.637596 1.3:-64378074 MS.gene001722:CDS
AAGAAGTGGAAAGAAATGCA+AGG 0.641850 1.3:-64379023 MS.gene001722:CDS
AGGGCAAAGTGGTCATAGGA+GGG 0.643035 1.3:-64378636 MS.gene001722:CDS
CCACCATACAAACAAGGTGG+TGG 0.656823 1.3:+64380424 None:intergenic
ACACACTATGAAGTCGTCGA+AGG 0.660577 1.3:-64378663 MS.gene001722:CDS
TATGTCTCTTAGAAGGACAG+TGG 0.662720 1.3:-64378081 MS.gene001722:CDS
CTCATCTGAAAACAACGATG+AGG 0.668787 1.3:-64378702 MS.gene001722:CDS
CCACCACCTTGTTTGTATGG+TGG 0.671674 1.3:-64380424 MS.gene001722:CDS
AGCTTAAGTCCCAAACACCA+AGG 0.671681 1.3:+64378035 None:intergenic
AATTTGATACAACTAAGGAG+TGG 0.674782 1.3:-64378233 MS.gene001722:CDS
TCGAAGGAGAAAGGGCAAAG+TGG 0.682624 1.3:-64378647 MS.gene001722:CDS
GCAACACCACCATACAAACA+AGG 0.686159 1.3:+64380418 None:intergenic
GGCTACCGGAGGATCTCCGG+CGG 0.699131 1.3:-64380489 MS.gene001722:CDS
TGACCTATATGGGCTACCGG+AGG 0.701402 1.3:-64380500 MS.gene001722:CDS
CAAGTATTACAAGAAGACCA+AGG 0.709647 1.3:-64378981 MS.gene001722:CDS
CTAGAAATTTCATTCCACAA+GGG 0.711484 1.3:+64380067 None:intergenic
TGGTGAGTGAAGCTACTACG+AGG 0.746302 1.3:+64380337 None:intergenic
ACACCACCATACAAACAAGG+TGG 0.760464 1.3:+64380421 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTTAAATTGTAGTTA+CGG - chr1.3:64379152-64379171 MS.gene001722:intron 10.0%
!!! TTTTATTTCACTTTTTTTTT+TGG - chr1.3:64378515-64378534 MS.gene001722:CDS 10.0%
!! ATCATAATAAAAAAAACACA+TGG + chr1.3:64378628-64378647 None:intergenic 15.0%
!! AAGTTGTAAGAAAACATATT+GGG - chr1.3:64380145-64380164 MS.gene001722:CDS 20.0%
!! ATTAACCAAGAAAATACTAA+TGG - chr1.3:64379715-64379734 MS.gene001722:intron 20.0%
!! TTAGTGTCTTAATTAATTAC+TGG - chr1.3:64378481-64378500 MS.gene001722:CDS 20.0%
!! TTTCAAATTTGATACAACTA+AGG - chr1.3:64380280-64380299 MS.gene001722:CDS 20.0%
!!! TTTTGTTTGAAAATATCATG+TGG - chr1.3:64378987-64379006 MS.gene001722:CDS 20.0%
! AGTAAGAGAAAAAGGATATT+TGG - chr1.3:64380320-64380339 MS.gene001722:CDS 25.0%
! AGTATATACAAAACAAAGAC+AGG + chr1.3:64378778-64378797 None:intergenic 25.0%
! ATATTAGTATGTCTCTTAGA+AGG - chr1.3:64380430-64380449 MS.gene001722:CDS 25.0%
! ATATTATCCACACTTTCAAA+AGG + chr1.3:64380237-64380256 None:intergenic 25.0%
! ATCAAGAAATACATGAACTT+TGG - chr1.3:64380076-64380095 MS.gene001722:CDS 25.0%
! CAATGAATGATTTAGTATCA+TGG + chr1.3:64378722-64378741 None:intergenic 25.0%
! GAAGTTGTAAGAAAACATAT+TGG - chr1.3:64380144-64380163 MS.gene001722:CDS 25.0%
! GACAAAAACGAAAATTATCA+TGG + chr1.3:64378580-64378599 None:intergenic 25.0%
! TATATGGGATTTAATAGGAA+TGG - chr1.3:64380381-64380400 MS.gene001722:CDS 25.0%
! TATTATCCACACTTTCAAAA+GGG + chr1.3:64380236-64380255 None:intergenic 25.0%
! TCAAGAAATACATGAACTTT+GGG - chr1.3:64380077-64380096 MS.gene001722:CDS 25.0%
! TGGTTTATATGGGATTTAAT+AGG - chr1.3:64380376-64380395 MS.gene001722:CDS 25.0%
!! ATTTTCTTGGTTAATTGTGA+AGG + chr1.3:64379710-64379729 None:intergenic 25.0%
AAAACATCACCAACTATCAT+AGG + chr1.3:64378157-64378176 None:intergenic 30.0%
AAACATCACCAACTATCATA+GGG + chr1.3:64378156-64378175 None:intergenic 30.0%
AAATCAAGTGATACTGTGAT+AGG + chr1.3:64378963-64378982 None:intergenic 30.0%
AATTTGATACAACTAAGGAG+TGG - chr1.3:64380285-64380304 MS.gene001722:CDS 30.0%
ATAGGGTCATAGGAATAATT+TGG + chr1.3:64378139-64378158 None:intergenic 30.0%
CTAGAAATTTCATTCCACAA+GGG + chr1.3:64378454-64378473 None:intergenic 30.0%
GAAAAAGGATATTTGGATGA+TGG - chr1.3:64380327-64380346 MS.gene001722:CDS 30.0%
GAACATCAAGTAAGAGAAAA+AGG - chr1.3:64380312-64380331 MS.gene001722:CDS 30.0%
GATACTAAATCATTCATTGC+AGG - chr1.3:64378723-64378742 MS.gene001722:CDS 30.0%
GGTTTAGAAACTTCTGATAA+AGG - chr1.3:64378313-64378332 MS.gene001722:CDS 30.0%
GTGATTGTAATTGAAACCTT+CGG + chr1.3:64379045-64379064 None:intergenic 30.0%
GTGTGGATAATATTCATAGA+TGG - chr1.3:64380244-64380263 MS.gene001722:CDS 30.0%
TAGAAACTTCTGATAAAGGA+TGG - chr1.3:64378317-64378336 MS.gene001722:CDS 30.0%
TATTCATAGATGGACAGAAA+TGG - chr1.3:64380254-64380273 MS.gene001722:CDS 30.0%
TGATTGTAATTGAAACCTTC+GGG + chr1.3:64379044-64379063 None:intergenic 30.0%
TTAGACTTTGTGAATACTTG+TGG + chr1.3:64379765-64379784 None:intergenic 30.0%
TTGAAAATATCATGTGGTCT+TGG - chr1.3:64378993-64379012 MS.gene001722:CDS 30.0%
TTGATTCATGTAACAACAGA+TGG - chr1.3:64378350-64378369 MS.gene001722:CDS 30.0%
TTGTTGTATCATTTGCTTCT+TGG + chr1.3:64380203-64380222 None:intergenic 30.0%
! CAACACCATTAGTATTTTCT+TGG + chr1.3:64379723-64379742 None:intergenic 30.0%
! CTTTTGTGATTGAAAATGAC+AGG - chr1.3:64378547-64378566 MS.gene001722:CDS 30.0%
! GATCTTCTTGTTTAGGATAA+TGG - chr1.3:64379453-64379472 MS.gene001722:intron 30.0%
! TGTTAGTGTTTTGTACTGAA+AGG + chr1.3:64378929-64378948 None:intergenic 30.0%
!! ATATTTGGATGATGGAGTTT+GGG - chr1.3:64380335-64380354 MS.gene001722:CDS 30.0%
!! GGTAATTTTGTCTAAAGTTG+AGG + chr1.3:64379653-64379672 None:intergenic 30.0%
!!! CTGTCATTTTCAATCACAAA+AGG + chr1.3:64378549-64378568 None:intergenic 30.0%
AAGAAGTGGAAAGAAATGCA+AGG - chr1.3:64379495-64379514 MS.gene001722:intron 35.0%
AGAACAAGAGATAGCATCAA+AGG - chr1.3:64380017-64380036 MS.gene001722:intron 35.0%
AGCTGAGTGCAAGAAAATAT+GGG - chr1.3:64380404-64380423 MS.gene001722:CDS 35.0%
AGGTGAAAGGATGGTTTATA+TGG - chr1.3:64380365-64380384 MS.gene001722:CDS 35.0%
CAAGTATTACAAGAAGACCA+AGG - chr1.3:64379537-64379556 MS.gene001722:intron 35.0%
CAGCTATAGTGGTATTTGTA+GGG + chr1.3:64378231-64378250 None:intergenic 35.0%
CCTACAATGCAAAGATTTGT+GGG + chr1.3:64379096-64379115 None:intergenic 35.0%
CCTAGAAATTTCATTCCACA+AGG + chr1.3:64378455-64378474 None:intergenic 35.0%
CCTTGTGGAATGAAATTTCT+AGG - chr1.3:64378452-64378471 MS.gene001722:CDS 35.0%
GCACAAAGCTGTAATAAATG+TGG - chr1.3:64379261-64379280 MS.gene001722:intron 35.0%
GGTGAAAGGATGGTTTATAT+GGG - chr1.3:64380366-64380385 MS.gene001722:CDS 35.0%
TAGCATCAAAGGAAGAAGAA+AGG - chr1.3:64380028-64380047 MS.gene001722:intron 35.0%
TATTACAAGAAGACCAAGGA+AGG - chr1.3:64379541-64379560 MS.gene001722:intron 35.0%
TCCTACAATGCAAAGATTTG+TGG + chr1.3:64379097-64379116 None:intergenic 35.0%
TGCATTTCTTTCCACTTCTT+TGG + chr1.3:64379495-64379514 None:intergenic 35.0%
TTATTGAGACTCAAGATGCT+TGG - chr1.3:64379962-64379981 MS.gene001722:intron 35.0%
TTCATTGCAGGTGCAAATTA+AGG - chr1.3:64378735-64378754 MS.gene001722:CDS 35.0%
TTGAGTTTGAGTAGCAACAA+AGG + chr1.3:64379686-64379705 None:intergenic 35.0%
TTGCATTGTAGGAGATCAAA+GGG - chr1.3:64379104-64379123 MS.gene001722:intron 35.0%
TTTGCATTGTAGGAGATCAA+AGG - chr1.3:64379103-64379122 MS.gene001722:intron 35.0%
TTTGGGCTAAAGAAAAAGCA+TGG - chr1.3:64380094-64380113 MS.gene001722:CDS 35.0%
! GCTTTGTGATCTTCTTGTTT+AGG - chr1.3:64379446-64379465 MS.gene001722:intron 35.0%
! TAGTACAACTTTTTACCCGA+AGG - chr1.3:64379026-64379045 MS.gene001722:CDS 35.0%
! TCATAGGAATAATTTGGTGG+AGG + chr1.3:64378133-64378152 None:intergenic 35.0%
! TCTTGGCTCTTACTCTTATT+TGG + chr1.3:64380186-64380205 None:intergenic 35.0%
! TTGGGCTAAAGAAAAAGCAT+GGG - chr1.3:64380095-64380114 MS.gene001722:CDS 35.0%
! TTTGGGATGAAATAGGTGAA+AGG - chr1.3:64380352-64380371 MS.gene001722:CDS 35.0%
!! GATATTTGGATGATGGAGTT+TGG - chr1.3:64380334-64380353 MS.gene001722:CDS 35.0%
!! TAGCAACAAAGGAAGCATTT+GGG + chr1.3:64379675-64379694 None:intergenic 35.0%
!! TGAATACCCTTTTGAAAGTG+TGG - chr1.3:64380227-64380246 MS.gene001722:CDS 35.0%
AAGTTGGAGAGGTAAAGTTG+AGG - chr1.3:64379912-64379931 MS.gene001722:intron 40.0%
ACCAACTATCATAGGGTCAT+AGG + chr1.3:64378149-64378168 None:intergenic 40.0%
ACTGTGGAGTCAAAAACACA+AGG - chr1.3:64380460-64380479 MS.gene001722:CDS 40.0%
ACTTCTGATAAAGGATGGCT+TGG - chr1.3:64378322-64378341 MS.gene001722:CDS 40.0%
AGACAGCTTGAAGCAATATG+TGG - chr1.3:64379604-64379623 MS.gene001722:intron 40.0%
AGAGAAAGAGTCTCTTGTCT+AGG + chr1.3:64378376-64378395 None:intergenic 40.0%
ATTTGTAGGGTTAACAGTGG+AGG + chr1.3:64378218-64378237 None:intergenic 40.0%
CCCACAAATCTTTGCATTGT+AGG - chr1.3:64379093-64379112 MS.gene001722:intron 40.0%
CTCATCTGAAAACAACGATG+AGG - chr1.3:64379816-64379835 MS.gene001722:intron 40.0%
GAATTTGGGTACCAAAGAAG+TGG - chr1.3:64379481-64379500 MS.gene001722:intron 40.0%
GAGCTGAGTGCAAGAAAATA+TGG - chr1.3:64380403-64380422 MS.gene001722:CDS 40.0%
GCAGCTATAGTGGTATTTGT+AGG + chr1.3:64378232-64378251 None:intergenic 40.0%
GCTGAGCGAATTAGGTTAAT+AGG + chr1.3:64378806-64378825 None:intergenic 40.0%
GGAAGAGAAAAGAGTCAATG+AGG - chr1.3:64380049-64380068 MS.gene001722:intron 40.0%
GGATGAAATAGGTGAAAGGA+TGG - chr1.3:64380356-64380375 MS.gene001722:CDS 40.0%
GGGTCATAGGAATAATTTGG+TGG + chr1.3:64378136-64378155 None:intergenic 40.0%
GGTAAAGCTAGTAGACAAGA+TGG - chr1.3:64379562-64379581 MS.gene001722:intron 40.0%
GGTATTTGTAGGGTTAACAG+TGG + chr1.3:64378221-64378240 None:intergenic 40.0%
GTGACTATACTTACTTGCAC+TGG - chr1.3:64378689-64378708 MS.gene001722:CDS 40.0%
TATGTCTCTTAGAAGGACAG+TGG - chr1.3:64380437-64380456 MS.gene001722:CDS 40.0%
TCCTATGACCCTATGATAGT+TGG - chr1.3:64378145-64378164 MS.gene001722:CDS 40.0%
! AGGATAATGGCTGAGGAATT+TGG - chr1.3:64379466-64379485 MS.gene001722:intron 40.0%
! CTTGTTTAGGATAATGGCTG+AGG - chr1.3:64379459-64379478 MS.gene001722:intron 40.0%
! GATGGAGTTTGGGATGAAAT+AGG - chr1.3:64380345-64380364 MS.gene001722:CDS 40.0%
! GGATAATGGCTGAGGAATTT+GGG - chr1.3:64379467-64379486 MS.gene001722:intron 40.0%
!! AGCAACAAAGGAAGCATTTG+GGG + chr1.3:64379674-64379693 None:intergenic 40.0%
!! ATAATCAGAAAGCACCCTTG+TGG - chr1.3:64378437-64378456 MS.gene001722:CDS 40.0%
!! CTCATCGTTGTTTTCAGATG+AGG + chr1.3:64379818-64379837 None:intergenic 40.0%
!! GTAGCAACAAAGGAAGCATT+TGG + chr1.3:64379676-64379695 None:intergenic 40.0%
!! TCTACTAGCTTTACCTTCCT+TGG + chr1.3:64379557-64379576 None:intergenic 40.0%
!! TTGATGATGTTATCAACCGC+CGG + chr1.3:64378048-64378067 None:intergenic 40.0%
AAACTCCAATAGCCCTAGCT+AGG + chr1.3:64378831-64378850 None:intergenic 45.0%
ACACACTATGAAGTCGTCGA+AGG - chr1.3:64379855-64379874 MS.gene001722:intron 45.0%
ACACCACCATACAAACAAGG+TGG + chr1.3:64378100-64378119 None:intergenic 45.0%
AGAAAGGGCAAAGTGGTCAT+AGG - chr1.3:64379878-64379897 MS.gene001722:intron 45.0%
AGCTTAAGTCCCAAACACCA+AGG + chr1.3:64380486-64380505 None:intergenic 45.0%
ATAGGAGGGCAAGGAAAAGT+TGG - chr1.3:64379896-64379915 MS.gene001722:intron 45.0%
ATGAAGTCGTCGAAGGAGAA+AGG - chr1.3:64379862-64379881 MS.gene001722:intron 45.0%
CAGTGGAGGAATAGTCATAG+TGG + chr1.3:64378204-64378223 None:intergenic 45.0%
GAGGCATGAGAGTTTGTGTT+TGG + chr1.3:64379634-64379653 None:intergenic 45.0%
GAGTCAAAAACACAAGGCCT+TGG - chr1.3:64380466-64380485 MS.gene001722:CDS 45.0%
GCAACACCACCATACAAACA+AGG + chr1.3:64378103-64378122 None:intergenic 45.0%
GCTTCTACTGCATTCTGTGT+AGG - chr1.3:64378292-64378311 MS.gene001722:CDS 45.0%
TGAAGTCGTCGAAGGAGAAA+GGG - chr1.3:64379863-64379882 MS.gene001722:intron 45.0%
TGAGACTCAAGATGCTTGGA+TGG - chr1.3:64379966-64379985 MS.gene001722:intron 45.0%
! GAACCACCACCTTGTTTGTA+TGG - chr1.3:64378091-64378110 MS.gene001722:CDS 45.0%
!! AAACACAAGGCCTTGGTGTT+TGG - chr1.3:64380473-64380492 MS.gene001722:CDS 45.0%
!! AACACAAGGCCTTGGTGTTT+GGG - chr1.3:64380474-64380493 MS.gene001722:CDS 45.0%
AAAGTGGTCATAGGAGGGCA+AGG - chr1.3:64379887-64379906 MS.gene001722:intron 50.0%
AAGGGCAAAGTGGTCATAGG+AGG - chr1.3:64379881-64379900 MS.gene001722:intron 50.0%
AGCTACCTAGCTAGGGCTAT+TGG - chr1.3:64378823-64378842 MS.gene001722:CDS 50.0%
AGGGCAAAGTGGTCATAGGA+GGG - chr1.3:64379882-64379901 MS.gene001722:intron 50.0%
AGGGCAAGGAAAAGTTGGAG+AGG - chr1.3:64379901-64379920 MS.gene001722:intron 50.0%
ATTCGCTCAGCTACCTAGCT+AGG - chr1.3:64378815-64378834 MS.gene001722:CDS 50.0%
CCACCATACAAACAAGGTGG+TGG + chr1.3:64378097-64378116 None:intergenic 50.0%
GCTAGGTAGCTGAGCGAATT+AGG + chr1.3:64378814-64378833 None:intergenic 50.0%
GGTGAGTGAAGCTACTACGA+GGG + chr1.3:64378183-64378202 None:intergenic 50.0%
TCGAAGGAGAAAGGGCAAAG+TGG - chr1.3:64379871-64379890 MS.gene001722:intron 50.0%
TGGTGAGTGAAGCTACTACG+AGG + chr1.3:64378184-64378203 None:intergenic 50.0%
TTCGCTCAGCTACCTAGCTA+GGG - chr1.3:64378816-64378835 MS.gene001722:CDS 50.0%
! AAACAAGGTGGTGGTTCTGC+TGG + chr1.3:64378088-64378107 None:intergenic 50.0%
! CCACCACCTTGTTTGTATGG+TGG - chr1.3:64378094-64378113 MS.gene001722:CDS 50.0%
! GAGTGACCTATATGGGCTAC+CGG - chr1.3:64378015-64378034 MS.gene001722:CDS 50.0%
!! CTTAGAAGGACAGTGGACTG+TGG - chr1.3:64380444-64380463 MS.gene001722:CDS 50.0%
AGCAGCAGCAGCAGCTATAG+TGG + chr1.3:64378242-64378261 None:intergenic 55.0%
GATCCTCCGGTAGCCCATAT+AGG + chr1.3:64378024-64378043 None:intergenic 55.0%
! TGACCTATATGGGCTACCGG+AGG - chr1.3:64378018-64378037 MS.gene001722:CDS 55.0%
ATCAACCGCCGGAGATCCTC+CGG + chr1.3:64378037-64378056 None:intergenic 60.0%
! ATGGGCTACCGGAGGATCTC+CGG - chr1.3:64378026-64378045 MS.gene001722:CDS 60.0%
GGCTACCGGAGGATCTCCGG+CGG - chr1.3:64378029-64378048 MS.gene001722:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 64378013 64380527 64378013 ID=MS.gene001722
chr1.3 mRNA 64378013 64380527 64378013 ID=MS.gene001722.t1;Parent=MS.gene001722
chr1.3 exon 64380067 64380527 64380067 ID=MS.gene001722.t1.exon1;Parent=MS.gene001722.t1
chr1.3 CDS 64380067 64380527 64380067 ID=cds.MS.gene001722.t1;Parent=MS.gene001722.t1
chr1.3 exon 64378013 64379072 64378013 ID=MS.gene001722.t1.exon2;Parent=MS.gene001722.t1
chr1.3 CDS 64378013 64379072 64378013 ID=cds.MS.gene001722.t1;Parent=MS.gene001722.t1
Gene Sequence

>MS.gene001722

ATGAGTGACCTATATGGGCTACCGGAGGATCTCCGGCGGTTGATAACATCATCAAGAAACACTACACATCTACCAGCAGAACCACCACCTTGTTTGTATGGTGGTGTTGCTACTTTTCCTCCACCAAATTATTCCTATGACCCTATGATAGTTGGTGATGTTTTCTACCCTCGTAGTAGCTTCACTCACCACTATGACTATTCCTCCACTGTTAACCCTACAAATACCACTATAGCTGCTGCTGCTGCTGCAGCAGCTTCTAATTCAGATCATGCTACTGCTTCTACTGCATTCTGTGTAGGTTTAGAAACTTCTGATAAAGGATGGCTTGGTAACTTTGATTCATGTAACAACAGATGGCCTAGACAAGAGACTCTTTCTCTTCTTGAAATCAGATCTCGTCTTGATTCTAAGTTCAGAGAGAATAATCAGAAAGCACCCTTGTGGAATGAAATTTCTAGGTATATCTTAGTGTCTTAATTAATTACTGGTTTAGCAAGCTTTTTATTTCACTTTTTTTTTTGGAATTATTTCCTTTTGTGATTGAAAATGACAGGTTTTTTTCCATGATAATTTTCGTTTTTGTCTTGAGTGTTAAAGCTAACTGAAGATCCATGTGTTTTTTTTATTATGATATATTTCTAGTTTTGTCTAAGAATTTTCACTGACTTGTGTAGTGACTATACTTACTTGCACTGGTTTTTTTCCATGATACTAAATCATTCATTGCAGGTGCAAATTAAGGATTTCTCACACTGAAAGCCTGTCTTTGTTTTGTATATACTATAGTCCTATTAACCTAATTCGCTCAGCTACCTAGCTAGGGCTATTGGAGTTTTGTTAATTCAAATGCATATATTTGATGTTTCTGACATCATTAATGAAAAGATCAGAATGTTTTCATTATTTTAATCCTTTCAGTACAAAACACTAACATTAATATTCAGCCTATCACAGTATCACTTGATTTGATTTTTTGTTTGAAAATATCATGTGGTCTTGGTCTTCATTATTAGTACAACTTTTTACCCGAAGGTTTCAATTACAATCACATATAATTTTCTAGTATTTCTTATATATCCCACAAATCTTTGCATTGTAGGAGATCAAAGGGTTTTGTAAGAGATTTGTTGACAATTTTAAATTTAAATTGTAGTTACGGTTGTATATTTTTTTATAATATTGTAGAGAATTATAATAAATTTGTTTCATTTTAAACAGCTAAATTTATTTAAACAACTCAAATATGCACAAAGCTGTAATAAATGTGGTTGATATAATATCGATGATTGCATTAGTGTTCTGATATTAATGACATAAAAAATCATTATGTTCAAAAATATTTTTTAAAAAAATTGCAATTAAATTTGTTGATGTGTTTTTTTGCTACAAATTTTGTTGATGTTTTAATGTGTATAACATATAATATAATAGCTTTGTGATCTTCTTGTTTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAGGAAAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGTAAAGCTAGTAGACAAGATGGTAAGCACTATAGATTTTTCAGACAGCTTGAAGCAATATGTGGAGAACCAAACACAAACTCTCATGCCTCAACTTTAGACAAAATTACCCCAAATGCTTCCTTTGTTGCTACTCAAACTCAAACCTTCACAATTAACCAAGAAAATACTAATGGTGTTGATCACAATTTGATCAATAACCACAAGTATTCACAAAGTCTAAGTTTCTCGAACTCGTCTGAATTTGAGACATCCTCATCTGAAAACAACGATGAGGATCTCTCAACTATTGCACACACTATGAAGTCGTCGAAGGAGAAAGGGCAAAGTGGTCATAGGAGGGCAAGGAAAAGTTGGAGAGGTAAAGTTGAGGAGATTGTAGATTCTCACATGAAAAATATTATTGAGACTCAAGATGCTTGGATGGAGAGAATGTTGAGTGTTGTTGAACAAAGAGAACAAGAGATAGCATCAAAGGAAGAAGAAAGGAAGAGAAAAGAGTCAATGAGGTTTGATCAAGAAATACATGAACTTTGGGCTAAAGAAAAAGCATGGGTTGAAGCAAGAGATTCTGCATTGTTAGAAGTTGTAAGAAAACATATTGGGATACAACTTGAAGCACCAAATAAGAGTAAGAGCCAAGAAGCAAATGATACAACAAATTATGAATACCCTTTTGAAAGTGTGGATAATATTCATAGATGGACAGAAATGGAAATTTCAAATTTGATACAACTAAGGAGTGGTTTTGAACATCAAGTAAGAGAAAAAGGATATTTGGATGATGGAGTTTGGGATGAAATAGGTGAAAGGATGGTTTATATGGGATTTAATAGGAATGGAGCTGAGTGCAAGAAAATATGGGATGATATTAGTATGTCTCTTAGAAGGACAGTGGACTGTGGAGTCAAAAACACAAGGCCTTGGTGTTTGGGACTTAAGCTGACAGATGATGACGACCTTTGA
Protein sequence

>MS.gene001722.t1

MSDLYGLPEDLRRLITSSRNTTHLPAEPPPCLYGGVATFPPPNYSYDPMIVGDVFYPRSSFTHHYDYSSTVNPTNTTIAAAAAAAASNSDHATASTAFCVGLETSDKGWLGNFDSCNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEPNTNSHASTLDKITPNASFVATQTQTFTINQENTNGVDHNLINNHKYSQSLSFSNSSEFETSSSENNDEDLSTIAHTMKSSKEKGQSGHRRARKSWRGKVEEIVDSHMKNIIETQDAWMERMLSVVEQREQEIASKEEERKRKESMRFDQEIHELWAKEKAWVEARDSALLEVVRKHIGIQLEAPNKSKSQEANDTTNYEYPFESVDNIHRWTEMEISNLIQLRSGFEHQVREKGYLDDGVWDEIGERMVYMGFNRNGAECKKIWDDISMSLRRTVDCGVKNTRPWCLGLKLTDDDDL