AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00187

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00187.t1 MTR_2g034600 96.767 433 14 0 33 465 125 557 0.0 862
MS.gene00187.t1 MTR_2g034600 93.407 455 22 2 19 465 107 561 0.0 862
MS.gene00187.t1 MTR_2g034600 93.407 455 22 2 19 465 42 496 0.0 862
MS.gene00187.t1 MTR_6g003960 30.078 256 174 3 200 451 333 587 3.58e-30 124
MS.gene00187.t1 MTR_5g041630 33.636 220 140 5 250 464 87 305 3.75e-30 119
MS.gene00187.t1 MTR_5g068860 29.455 275 184 6 186 453 213 484 1.75e-29 121
MS.gene00187.t1 MTR_5g068860 23.050 282 168 6 180 457 139 375 6.62e-13 71.2
MS.gene00187.t1 MTR_1g115415 29.474 285 189 6 180 456 175 455 5.99e-29 119
MS.gene00187.t1 MTR_1g115415 23.485 264 176 5 158 399 67 326 2.16e-13 72.4
MS.gene00187.t1 MTR_4g084630 26.103 272 195 4 186 451 47 318 1.84e-26 109
MS.gene00187.t1 MTR_4g084630 24.324 222 157 3 251 464 5 223 9.28e-14 72.8
MS.gene00187.t1 MTR_4g084630 24.242 264 187 5 69 325 3 260 1.78e-12 68.6
MS.gene00187.t1 MTR_2g049780 30.992 242 152 6 230 457 70 310 2.60e-26 108
MS.gene00187.t1 MTR_4g070060 24.913 289 208 7 180 461 309 595 2.88e-26 112
MS.gene00187.t1 MTR_4g070060 25.292 257 177 6 213 459 271 522 1.18e-19 92.4
MS.gene00187.t1 MTR_4g070060 29.949 197 135 3 177 371 378 573 1.50e-14 76.3
MS.gene00187.t1 MTR_5g094610 31.579 228 141 6 184 402 230 451 3.34e-25 108
MS.gene00187.t1 MTR_5g094610 27.468 233 139 7 239 447 177 403 3.45e-17 84.3
MS.gene00187.t1 MTR_5g094610 30.052 193 130 4 176 364 258 449 5.80e-17 83.6
MS.gene00187.t1 MTR_2g067230 29.333 225 147 5 236 455 86 303 1.00e-21 96.3
MS.gene00187.t1 MTR_3g092710 25.000 324 191 12 184 463 187 502 3.94e-20 93.2
MS.gene00187.t1 MTR_8g105560 25.948 343 196 9 177 463 155 495 2.19e-18 88.2
MS.gene00187.t1 MTR_8g105560 22.581 341 217 10 158 456 45 380 1.81e-12 69.7
MS.gene00187.t1 MTR_7g081270 29.756 205 132 5 256 451 78 279 4.30e-16 79.0
MS.gene00187.t1 MTR_4g119580 25.483 259 169 7 184 432 81 325 9.64e-13 70.1
MS.gene00187.t1 MTR_2g437100 25.498 251 174 7 184 427 99 343 6.78e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00187.t1 AT4G14605 63.431 443 155 3 16 452 27 468 0.0 562
MS.gene00187.t1 AT4G14605 63.431 443 155 3 16 452 27 468 0.0 562
MS.gene00187.t1 AT2G21710 28.912 294 194 7 180 463 316 604 2.54e-33 133
MS.gene00187.t1 AT2G21710 30.366 191 130 3 177 365 385 574 1.39e-13 73.6
MS.gene00187.t1 AT2G21710 28.114 281 182 7 46 325 306 567 4.62e-13 72.0
MS.gene00187.t1 AT2G44020 27.500 320 188 6 179 456 143 460 9.86e-30 122
MS.gene00187.t1 AT4G38160 27.372 274 186 5 190 453 52 322 2.17e-27 112
MS.gene00187.t1 AT4G38160 30.719 153 103 3 176 325 110 262 4.14e-14 73.6
MS.gene00187.t1 AT4G38160 27.372 274 186 5 190 453 52 322 2.17e-27 112
MS.gene00187.t1 AT4G38160 30.719 153 103 3 176 325 110 262 4.14e-14 73.6
MS.gene00187.t1 AT1G78930 28.125 256 179 3 200 451 320 574 2.66e-27 115
MS.gene00187.t1 AT4G38160 27.372 274 186 5 190 453 52 322 4.06e-27 112
MS.gene00187.t1 AT4G38160 30.719 153 103 3 176 325 110 262 4.80e-14 73.9
MS.gene00187.t1 AT4G38160 27.372 274 186 5 190 453 52 322 5.02e-27 112
MS.gene00187.t1 AT4G38160 30.719 153 103 3 176 325 110 262 6.28e-14 73.6
MS.gene00187.t1 AT2G34620 30.833 240 151 6 230 455 56 294 2.81e-25 105
MS.gene00187.t1 AT2G34620 28.972 214 143 7 158 367 66 274 2.51e-11 65.1
MS.gene00187.t1 AT2G21710 28.049 246 162 7 180 415 316 556 5.86e-24 105
MS.gene00187.t1 AT2G21710 25.229 218 156 2 216 426 245 462 3.32e-15 78.6
MS.gene00187.t1 AT2G21710 28.685 251 162 6 46 295 306 540 7.24e-13 71.2
MS.gene00187.t1 AT2G21710 31.847 157 104 3 177 331 385 540 4.45e-12 68.6
MS.gene00187.t1 AT2G03050 32.039 206 129 6 258 455 70 272 5.87e-24 101
MS.gene00187.t1 AT2G03050 25.346 217 140 8 156 367 53 252 4.06e-11 64.3
MS.gene00187.t1 AT2G03050 32.039 206 129 6 258 455 71 273 6.65e-24 101
MS.gene00187.t1 AT2G03050 25.346 217 140 8 156 367 54 253 4.25e-11 63.9
MS.gene00187.t1 AT2G21710 28.163 245 161 7 180 414 316 555 1.36e-23 104
MS.gene00187.t1 AT2G21710 25.229 218 156 2 216 426 245 462 2.91e-15 78.6
MS.gene00187.t1 AT2G21710 28.685 251 162 6 46 295 306 540 9.19e-13 70.9
MS.gene00187.t1 AT2G21710 31.847 157 104 3 177 331 385 540 4.30e-12 68.6
MS.gene00187.t1 AT4G02990 26.224 286 193 7 179 453 214 492 7.12e-23 102
MS.gene00187.t1 AT4G02990 25.909 220 145 4 158 363 115 330 1.89e-14 75.9
MS.gene00187.t1 AT4G02990 26.224 286 193 7 179 453 214 492 7.12e-23 102
MS.gene00187.t1 AT4G02990 25.909 220 145 4 158 363 115 330 1.89e-14 75.9
MS.gene00187.t1 AT3G18870 27.962 211 128 5 255 451 68 268 3.26e-20 90.9
MS.gene00187.t1 AT5G55580 25.941 239 162 7 184 410 117 352 4.38e-19 89.4
MS.gene00187.t1 AT5G55580 28.497 193 135 3 176 365 145 337 3.26e-18 86.7
MS.gene00187.t1 AT5G55580 23.529 255 185 7 182 428 80 332 3.06e-16 80.9
MS.gene00187.t1 AT5G55580 26.267 217 131 7 254 447 80 290 5.55e-13 70.9
MS.gene00187.t1 AT5G55580 25.000 188 131 5 256 433 117 304 1.77e-12 69.3
MS.gene00187.t1 AT5G55580 25.941 239 162 7 184 410 223 458 5.08e-19 90.1
MS.gene00187.t1 AT5G55580 28.497 193 135 3 176 365 251 443 4.74e-18 87.0
MS.gene00187.t1 AT5G55580 23.864 264 188 8 173 428 180 438 5.07e-16 80.9
MS.gene00187.t1 AT5G55580 26.267 217 131 7 254 447 186 396 9.14e-13 70.5
MS.gene00187.t1 AT5G55580 25.000 188 131 5 256 433 223 410 2.84e-12 68.9
MS.gene00187.t1 AT2G36000 29.082 196 126 5 267 455 122 311 1.15e-17 84.3
MS.gene00187.t1 AT2G36000 26.840 231 153 7 234 455 88 311 1.42e-17 84.0
MS.gene00187.t1 AT5G55580 27.097 155 110 3 184 335 223 377 2.55e-14 75.1
MS.gene00187.t1 AT5G55580 24.747 198 128 6 254 436 186 377 4.54e-12 68.2
MS.gene00187.t1 AT5G54180 24.555 281 171 9 177 453 247 490 1.31e-13 73.2
MS.gene00187.t1 AT1G21150 25.000 272 178 8 184 444 56 312 1.32e-11 66.2
MS.gene00187.t1 AT1G79220 30.769 143 92 3 180 320 149 286 1.36e-11 66.6
MS.gene00187.t1 AT1G21150 25.000 272 178 8 184 444 92 348 2.75e-11 65.5
MS.gene00187.t1 AT1G21150 25.000 272 178 8 184 444 156 412 4.53e-11 65.1
MS.gene00187.t1 AT1G62110 25.822 213 146 8 220 427 195 400 4.70e-11 65.1

Find 90 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTAACCAACTCAGATTT+TGG 0.122678 2.1:+58180393 None:intergenic
CACAAAACTTGGTACCTTTC+AGG 0.146574 2.1:-58181411 MS.gene00187:intron
TTCAATTGTCCACAAAATTT+TGG 0.188550 2.1:-58180582 MS.gene00187:CDS
ATGAAATTCTTTGAATCTTT+AGG 0.253896 2.1:-58180840 MS.gene00187:CDS
GGATACACCGTGGAAGAAAT+TGG 0.270831 2.1:-58180507 MS.gene00187:CDS
TTATCCTTAACAGGTGGATT+TGG 0.286270 2.1:+58181194 None:intergenic
AAAGAAAATGCAAGTTGATT+AGG 0.286687 2.1:-58180229 None:intergenic
TTCTCATTATCCTCACTAAA+AGG 0.287136 2.1:-58180908 MS.gene00187:CDS
TTGTGTTACGGGCTTTATAT+TGG 0.339450 2.1:+58180545 None:intergenic
GAGAGAAGGTGATCAATAAA+AGG 0.354084 2.1:+58181450 None:intergenic
GGGATTATGATTATGAGATA+TGG 0.366062 2.1:-58180486 MS.gene00187:CDS
CTATCCAAATCCACCTGTTA+AGG 0.367312 2.1:-58181198 MS.gene00187:CDS
GCGTCCGATTTATCCTTAAC+AGG 0.379368 2.1:+58181185 None:intergenic
CTGAGAATTTGATGCCGAAA+TGG 0.384614 2.1:-58180440 MS.gene00187:CDS
TCCACCTGTTAAGGATAAAT+CGG 0.398567 2.1:-58181189 MS.gene00187:CDS
TAAAGATTCAAAGAATTTCA+TGG 0.398908 2.1:+58180842 None:intergenic
TTTACCCTCCAAACTATAGT+AGG 0.403290 2.1:+58180983 None:intergenic
ACACTGTAACTAACAATAGT+TGG 0.403606 2.1:+58180672 None:intergenic
AACCCTATTGGCAGCAGAAA+AGG 0.405382 2.1:-58181559 MS.gene00187:CDS
GGTGAGATTACTGTTGAATC+AGG 0.408489 2.1:-58180301 MS.gene00187:CDS
AGCTTACAACTCTTGAGATC+AGG 0.409547 2.1:-58181292 MS.gene00187:CDS
CTAGGACTAGGAGGTGGAAT+TGG 0.414937 2.1:+58181161 None:intergenic
AAACTATAGTAGGCAAAAGC+TGG 0.426748 2.1:+58180993 None:intergenic
GTCGCATAATAGTCCTAATC+TGG 0.437513 2.1:+58181021 None:intergenic
GCAATGTACTTCCGTTCTCT+AGG 0.440973 2.1:-58180627 MS.gene00187:CDS
ACTGTTGCCTCCAACCCTAT+TGG 0.443356 2.1:-58181571 MS.gene00187:CDS
CAATGTACTTCCGTTCTCTA+GGG 0.451044 2.1:-58180626 MS.gene00187:CDS
TGCTATAAGTTAGCAGGGCT+GGG 0.457629 2.1:+58180778 None:intergenic
GTGCTATAAGTTAGCAGGGC+TGG 0.458589 2.1:+58180777 None:intergenic
GTGGACAATTGAATAGAAGA+AGG 0.464746 2.1:+58180592 None:intergenic
TCCTCATATTGCTTATCTGA+TGG 0.465202 2.1:-58181063 MS.gene00187:CDS
TGAGAATTTGATGCCGAAAT+GGG 0.466974 2.1:-58180439 MS.gene00187:CDS
TCTGCTGCCAATAGGGTTGG+AGG 0.469021 2.1:+58181564 None:intergenic
CTCAACTTCCTTCCTCTACA+AGG 0.472025 2.1:-58181755 MS.gene00187:CDS
GAATGAATATTGACCAGATT+AGG 0.481227 2.1:-58181034 MS.gene00187:CDS
GGACGAAGATTTCCCTCAGC+AGG 0.482343 2.1:+58181083 None:intergenic
TCTGCGTGCTATAAGTTAGC+AGG 0.485788 2.1:+58180772 None:intergenic
GATACACCGTGGAAGAAATT+GGG 0.490444 2.1:-58180506 MS.gene00187:CDS
AGGTGTTGACAAGGAACAAT+GGG 0.491795 2.1:-58180820 MS.gene00187:CDS
ACTAAAAGGCCTCAATTATG+TGG 0.498259 2.1:-58180894 MS.gene00187:CDS
CACTGTAACTAACAATAGTT+GGG 0.500646 2.1:+58180673 None:intergenic
GGATTACCCAAAATCTGAGT+TGG 0.502609 2.1:-58180400 MS.gene00187:CDS
TAGAGTGAAGCTTCGAGAGA+AGG 0.507356 2.1:+58181436 None:intergenic
CATAATCCCAATTTCTTCCA+CGG 0.513081 2.1:+58180500 None:intergenic
AAGTTAGCAGGGCTGGGAAA+CGG 0.513243 2.1:+58180784 None:intergenic
CGTTCTCTAGGGGTTGATGT+TGG 0.515834 2.1:-58180615 MS.gene00187:CDS
AAACAAGGTTAATACAGCCT+TGG 0.517039 2.1:+58181530 None:intergenic
CTTCTGAGACACCAAATTCG+CGG 0.517645 2.1:+58180724 None:intergenic
TTCACTCTAAACACAAAACT+TGG 0.527791 2.1:-58181422 MS.gene00187:CDS
AACTATAGTAGGCAAAAGCT+GGG 0.542556 2.1:+58180994 None:intergenic
TTTGCCTACTATAGTTTGGA+GGG 0.546380 2.1:-58180987 MS.gene00187:CDS
AAGAAGACCCTTGTAGAGGA+AGG 0.547271 2.1:+58181747 None:intergenic
TCCATCAGATAAGCAATATG+AGG 0.550329 2.1:+58181062 None:intergenic
TTAGAGTCTACCGCTGGACT+AGG 0.566955 2.1:+58181143 None:intergenic
GCTTACAACTCTTGAGATCA+GGG 0.568117 2.1:-58181291 MS.gene00187:CDS
TCCGATTTATCCTTAACAGG+TGG 0.568259 2.1:+58181188 None:intergenic
GTCTGAGTACAAAGCACCAA+TGG 0.568456 2.1:+58181617 None:intergenic
ATAAGCATTAGACCTTCCAT+TGG 0.572102 2.1:-58181633 MS.gene00187:intron
GATTCAAAGAATTTCATGGT+GGG 0.572446 2.1:+58180846 None:intergenic
AGAAATTCTAGTGGATGTAG+TGG 0.577348 2.1:-58181225 MS.gene00187:CDS
AGCAGAAAAGGAAGAAGCCA+AGG 0.582063 2.1:-58181547 MS.gene00187:CDS
AATGTACTTCCGTTCTCTAG+GGG 0.585781 2.1:-58180625 MS.gene00187:CDS
ACTTTCTTAGAGTCTACCGC+TGG 0.586538 2.1:+58181137 None:intergenic
GGAGGGTAAAATTAAGCCAG+TGG 0.594688 2.1:-58180970 MS.gene00187:CDS
AGAAAAGAAGACCCTTGTAG+AGG 0.600416 2.1:+58181743 None:intergenic
ATTGCTTATCTGATGGAACT+CGG 0.604771 2.1:-58181056 MS.gene00187:CDS
TGAATCTTTAGGTGTTGACA+AGG 0.607852 2.1:-58180829 MS.gene00187:CDS
AGACTGATTCCACATAATTG+AGG 0.610049 2.1:+58180885 None:intergenic
TAGGTGTTGACAAGGAACAA+TGG 0.611520 2.1:-58180821 MS.gene00187:CDS
TATTGTTAGTTACAGTGTAG+AGG 0.611669 2.1:-58180667 MS.gene00187:CDS
TTGTAGCAACCAAACCTGAA+AGG 0.613581 2.1:+58181397 None:intergenic
CAACATCAACCCCTAGAGAA+CGG 0.618334 2.1:+58180616 None:intergenic
CTGCGTGCTATAAGTTAGCA+GGG 0.619373 2.1:+58180773 None:intergenic
GAATCACTTTACGAAGAGCA+TGG 0.623459 2.1:-58181248 MS.gene00187:CDS
TATACCACTCACTCGAGACA+CGG 0.626260 2.1:+58181109 None:intergenic
ACCTCCTAGTCCTAGTCCAG+CGG 0.630206 2.1:-58181153 MS.gene00187:CDS
GAGTACAAAGCACCAATGGA+AGG 0.631198 2.1:+58181621 None:intergenic
GACGAAGATTTCCCTCAGCA+GGG 0.635800 2.1:+58181084 None:intergenic
TCTACCGCTGGACTAGGACT+AGG 0.636230 2.1:+58181149 None:intergenic
GGTGTCTCAGAAGAGAACAT+AGG 0.641929 2.1:-58180714 MS.gene00187:CDS
AAAGCCGTGTCTCGAGTGAG+TGG 0.646198 2.1:-58181113 MS.gene00187:CDS
AGAGCATGGAGAAATTCTAG+TGG 0.648996 2.1:-58181234 MS.gene00187:CDS
GCTGGACTAGGACTAGGAGG+TGG 0.650924 2.1:+58181155 None:intergenic
GAGTGGTATAGACCCTGCTG+AGG 0.656302 2.1:-58181096 MS.gene00187:CDS
GAACGGAAGTACATTGCTGT+CGG 0.657257 2.1:+58180633 None:intergenic
TCAACTTCCTTCCTCTACAA+GGG 0.663747 2.1:-58181754 MS.gene00187:CDS
AGTGGTATAGACCCTGCTGA+GGG 0.666006 2.1:-58181095 MS.gene00187:CDS
ACCGCTGGACTAGGACTAGG+AGG 0.679156 2.1:+58181152 None:intergenic
AGATTCAAAGAATTTCATGG+TGG 0.685200 2.1:+58180845 None:intergenic
CTTGGAGAGAGGATACACCG+TGG 0.810527 2.1:-58180517 MS.gene00187:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATGAGAATTTTTTCTTT+TGG + chr2.1:58181087-58181106 None:intergenic 15.0%
!! ATGAAATTCTTTGAATCTTT+AGG - chr2.1:58181165-58181184 MS.gene00187:CDS 20.0%
!! TAAAGATTCAAAGAATTTCA+TGG + chr2.1:58181166-58181185 None:intergenic 20.0%
!!! TAATAACTTTCTTTTTGCAT+TGG - chr2.1:58180647-58180666 MS.gene00187:CDS 20.0%
! AAACTGTATCCAAAAAATTG+AGG + chr2.1:58181639-58181658 None:intergenic 25.0%
! AACTGTATCCAAAAAATTGA+GGG + chr2.1:58181638-58181657 None:intergenic 25.0%
! TCTCATTGACATAATAATCA+GGG - chr2.1:58180686-58180705 MS.gene00187:CDS 25.0%
!! AATTTAACCAACTCAGATTT+TGG + chr2.1:58181615-58181634 None:intergenic 25.0%
!! ATTTAACCAACTCAGATTTT+GGG + chr2.1:58181614-58181633 None:intergenic 25.0%
!! TTCAATTGTCCACAAAATTT+TGG - chr2.1:58181423-58181442 MS.gene00187:CDS 25.0%
!!! GTTAAATTCCCTCAATTTTT+TGG - chr2.1:58181627-58181646 MS.gene00187:CDS 25.0%
ACACTGTAACTAACAATAGT+TGG + chr2.1:58181336-58181355 None:intergenic 30.0%
AGATTCAAAGAATTTCATGG+TGG + chr2.1:58181163-58181182 None:intergenic 30.0%
CACTGTAACTAACAATAGTT+GGG + chr2.1:58181335-58181354 None:intergenic 30.0%
CTCCAAGAAAAATTGTGTTA+CGG + chr2.1:58181475-58181494 None:intergenic 30.0%
GAATGAATATTGACCAGATT+AGG - chr2.1:58180971-58180990 MS.gene00187:CDS 30.0%
GATTCAAAGAATTTCATGGT+GGG + chr2.1:58181162-58181181 None:intergenic 30.0%
GGGATTATGATTATGAGATA+TGG - chr2.1:58181519-58181538 MS.gene00187:CDS 30.0%
GTCAAAAAGTAATCCCATTT+CGG + chr2.1:58181582-58181601 None:intergenic 30.0%
GTCTCATTGACATAATAATC+AGG - chr2.1:58180685-58180704 MS.gene00187:CDS 30.0%
TATTGTTAGTTACAGTGTAG+AGG - chr2.1:58181338-58181357 MS.gene00187:intron 30.0%
TCCAAGAAAAATTGTGTTAC+GGG + chr2.1:58181474-58181493 None:intergenic 30.0%
TTCACTCTAAACACAAAACT+TGG - chr2.1:58180583-58180602 MS.gene00187:CDS 30.0%
TTCTCATTATCCTCACTAAA+AGG - chr2.1:58181097-58181116 MS.gene00187:CDS 30.0%
! ATGCTAAGACCAAAATTTTG+TGG + chr2.1:58181435-58181454 None:intergenic 30.0%
! TTCTTTTCTCAGGAAAAATC+TGG - chr2.1:58180276-58180295 MS.gene00187:CDS 30.0%
!!! AAATTTTGGTCTTAGCATTG+AGG - chr2.1:58181437-58181456 MS.gene00187:CDS 30.0%
!!! ATGGGATTACTTTTTGACTA+TGG - chr2.1:58181584-58181603 MS.gene00187:CDS 30.0%
!!! GTTGAGTTTTTTCTTGAACT+TGG - chr2.1:58181057-58181076 MS.gene00187:CDS 30.0%
AAACAAGGTTAATACAGCCT+TGG + chr2.1:58180478-58180497 None:intergenic 35.0%
AAACTATAGTAGGCAAAAGC+TGG + chr2.1:58181015-58181034 None:intergenic 35.0%
AACTATAGTAGGCAAAAGCT+GGG + chr2.1:58181014-58181033 None:intergenic 35.0%
ACCTCGTTTCTTCAAAAACA+AGG + chr2.1:58180493-58180512 None:intergenic 35.0%
ACTAAAAGGCCTCAATTATG+TGG - chr2.1:58181111-58181130 MS.gene00187:CDS 35.0%
ATAAGCATTAGACCTTCCAT+TGG - chr2.1:58180372-58180391 MS.gene00187:CDS 35.0%
ATTGCTTATCTGATGGAACT+CGG - chr2.1:58180949-58180968 MS.gene00187:CDS 35.0%
CATAATCCCAATTTCTTCCA+CGG + chr2.1:58181508-58181527 None:intergenic 35.0%
GAGAGAAGGTGATCAATAAA+AGG + chr2.1:58180558-58180577 None:intergenic 35.0%
GTGGACAATTGAATAGAAGA+AGG + chr2.1:58181416-58181435 None:intergenic 35.0%
TAGATGTTGCAATTGACATG+AGG - chr2.1:58180325-58180344 MS.gene00187:CDS 35.0%
TCAAGAAAAAACTCAACCAC+TGG + chr2.1:58181054-58181073 None:intergenic 35.0%
TCAATGAGACTGTGATTAAC+AGG + chr2.1:58180675-58180694 None:intergenic 35.0%
TCCACCTGTTAAGGATAAAT+CGG - chr2.1:58180816-58180835 MS.gene00187:CDS 35.0%
TCCATCAGATAAGCAATATG+AGG + chr2.1:58180946-58180965 None:intergenic 35.0%
TCCTCATATTGCTTATCTGA+TGG - chr2.1:58180942-58180961 MS.gene00187:CDS 35.0%
TGAGAATTTGATGCCGAAAT+GGG - chr2.1:58181566-58181585 MS.gene00187:CDS 35.0%
TTTACCCTCCAAACTATAGT+AGG + chr2.1:58181025-58181044 None:intergenic 35.0%
TTTGCCTACTATAGTTTGGA+GGG - chr2.1:58181018-58181037 MS.gene00187:CDS 35.0%
! ACACAATTTTTCTTGGAGAG+AGG - chr2.1:58181477-58181496 MS.gene00187:CDS 35.0%
! AGAAATTCTAGTGGATGTAG+TGG - chr2.1:58180780-58180799 MS.gene00187:CDS 35.0%
! AGACTGATTCCACATAATTG+AGG + chr2.1:58181123-58181142 None:intergenic 35.0%
! AGCTTTTGCCTACTATAGTT+TGG - chr2.1:58181014-58181033 MS.gene00187:CDS 35.0%
! ATAATTGAGGCCTTTTAGTG+AGG + chr2.1:58181110-58181129 None:intergenic 35.0%
! TTATCCTTAACAGGTGGATT+TGG + chr2.1:58180814-58180833 None:intergenic 35.0%
! TTGTGTTACGGGCTTTATAT+TGG + chr2.1:58181463-58181482 None:intergenic 35.0%
! TTTTGCCTACTATAGTTTGG+AGG - chr2.1:58181017-58181036 MS.gene00187:CDS 35.0%
!! TGAATCTTTAGGTGTTGACA+AGG - chr2.1:58181176-58181195 MS.gene00187:CDS 35.0%
!!! ACCTTGTTTTTGAAGAAACG+AGG - chr2.1:58180489-58180508 MS.gene00187:CDS 35.0%
AATGTACTTCCGTTCTCTAG+GGG - chr2.1:58181380-58181399 MS.gene00187:intron 40.0%
AGAAAAGAAGACCCTTGTAG+AGG + chr2.1:58180265-58180284 None:intergenic 40.0%
AGAGCATGGAGAAATTCTAG+TGG - chr2.1:58180771-58180790 MS.gene00187:CDS 40.0%
AGCTTACAACTCTTGAGATC+AGG - chr2.1:58180713-58180732 MS.gene00187:CDS 40.0%
ATGCACGCGTGAAAAATTCT+GGG - chr2.1:58181682-58181701 MS.gene00187:intron 40.0%
CAATGTACTTCCGTTCTCTA+GGG - chr2.1:58181379-58181398 MS.gene00187:intron 40.0%
CACAAAACTTGGTACCTTTC+AGG - chr2.1:58180594-58180613 MS.gene00187:CDS 40.0%
CTATCCAAATCCACCTGTTA+AGG - chr2.1:58180807-58180826 MS.gene00187:CDS 40.0%
CTGAGAATTTGATGCCGAAA+TGG - chr2.1:58181565-58181584 MS.gene00187:CDS 40.0%
GAATCACTTTACGAAGAGCA+TGG - chr2.1:58180757-58180776 MS.gene00187:CDS 40.0%
GATACACCGTGGAAGAAATT+GGG - chr2.1:58181499-58181518 MS.gene00187:CDS 40.0%
GCTTACAACTCTTGAGATCA+GGG - chr2.1:58180714-58180733 MS.gene00187:CDS 40.0%
GGATTACCCAAAATCTGAGT+TGG - chr2.1:58181605-58181624 MS.gene00187:CDS 40.0%
GGTGAGATTACTGTTGAATC+AGG - chr2.1:58181704-58181723 MS.gene00187:intron 40.0%
GTCGCATAATAGTCCTAATC+TGG + chr2.1:58180987-58181006 None:intergenic 40.0%
TATGCACGCGTGAAAAATTC+TGG - chr2.1:58181681-58181700 MS.gene00187:intron 40.0%
TCAACTTCCTTCCTCTACAA+GGG - chr2.1:58180251-58180270 MS.gene00187:CDS 40.0%
TCCGATTTATCCTTAACAGG+TGG + chr2.1:58180820-58180839 None:intergenic 40.0%
TTGTAGCAACCAAACCTGAA+AGG + chr2.1:58180611-58180630 None:intergenic 40.0%
! GCCCGTAACACAATTTTTCT+TGG - chr2.1:58181470-58181489 MS.gene00187:CDS 40.0%
! GTAGATTTTCTCCGCGAATT+TGG - chr2.1:58181270-58181289 MS.gene00187:CDS 40.0%
! TACAAGGGTCTTCTTTTCTC+AGG - chr2.1:58180266-58180285 MS.gene00187:CDS 40.0%
! TTCCTTTTCTGCTGCCAATA+GGG + chr2.1:58180451-58180470 None:intergenic 40.0%
! TTTTTCACGCGTGCATATCT+CGG + chr2.1:58181678-58181697 None:intergenic 40.0%
!! AACTTGGTACCTTTCAGGTT+TGG - chr2.1:58180599-58180618 MS.gene00187:CDS 40.0%
!! AGGTGTTGACAAGGAACAAT+GGG - chr2.1:58181185-58181204 MS.gene00187:CDS 40.0%
!! TAGGTGTTGACAAGGAACAA+TGG - chr2.1:58181184-58181203 MS.gene00187:CDS 40.0%
AACCCTATTGGCAGCAGAAA+AGG - chr2.1:58180446-58180465 MS.gene00187:CDS 45.0%
AAGAAGACCCTTGTAGAGGA+AGG + chr2.1:58180261-58180280 None:intergenic 45.0%
ACTTTCTTAGAGTCTACCGC+TGG + chr2.1:58180871-58180890 None:intergenic 45.0%
AGCAGAAAAGGAAGAAGCCA+AGG - chr2.1:58180458-58180477 MS.gene00187:CDS 45.0%
CAACATCAACCCCTAGAGAA+CGG + chr2.1:58181392-58181411 None:intergenic 45.0%
CTCAACTTCCTTCCTCTACA+AGG - chr2.1:58180250-58180269 MS.gene00187:CDS 45.0%
CTGCGTGCTATAAGTTAGCA+GGG + chr2.1:58181235-58181254 None:intergenic 45.0%
GCAATGTACTTCCGTTCTCT+AGG - chr2.1:58181378-58181397 MS.gene00187:intron 45.0%
GCGTCCGATTTATCCTTAAC+AGG + chr2.1:58180823-58180842 None:intergenic 45.0%
GGAGGGTAAAATTAAGCCAG+TGG - chr2.1:58181035-58181054 MS.gene00187:CDS 45.0%
GGATACACCGTGGAAGAAAT+TGG - chr2.1:58181498-58181517 MS.gene00187:CDS 45.0%
GGTGTCTCAGAAGAGAACAT+AGG - chr2.1:58181291-58181310 MS.gene00187:CDS 45.0%
TAGAGTGAAGCTTCGAGAGA+AGG + chr2.1:58180572-58180591 None:intergenic 45.0%
TATACCACTCACTCGAGACA+CGG + chr2.1:58180899-58180918 None:intergenic 45.0%
TCTGCGTGCTATAAGTTAGC+AGG + chr2.1:58181236-58181255 None:intergenic 45.0%
TGCACGCGTGAAAAATTCTG+GGG - chr2.1:58181683-58181702 MS.gene00187:intron 45.0%
TGCTATAAGTTAGCAGGGCT+GGG + chr2.1:58181230-58181249 None:intergenic 45.0%
! CTTCCTTTTCTGCTGCCAAT+AGG + chr2.1:58180452-58180471 None:intergenic 45.0%
! GAACGGAAGTACATTGCTGT+CGG + chr2.1:58181375-58181394 None:intergenic 45.0%
! GAGTACAAAGCACCAATGGA+AGG + chr2.1:58180387-58180406 None:intergenic 45.0%
! GTCTGAGTACAAAGCACCAA+TGG + chr2.1:58180391-58180410 None:intergenic 45.0%
! TTTTCTGCTGCCAATAGGGT+TGG + chr2.1:58180447-58180466 None:intergenic 45.0%
!! CTTCTGAGACACCAAATTCG+CGG + chr2.1:58181284-58181303 None:intergenic 45.0%
AAGTTAGCAGGGCTGGGAAA+CGG + chr2.1:58181224-58181243 None:intergenic 50.0%
ACTGTTGCCTCCAACCCTAT+TGG - chr2.1:58180434-58180453 MS.gene00187:CDS 50.0%
AGTGGTATAGACCCTGCTGA+GGG - chr2.1:58180910-58180929 MS.gene00187:CDS 50.0%
CTAGGACTAGGAGGTGGAAT+TGG + chr2.1:58180847-58180866 None:intergenic 50.0%
GACGAAGATTTCCCTCAGCA+GGG + chr2.1:58180924-58180943 None:intergenic 50.0%
GTGCTATAAGTTAGCAGGGC+TGG + chr2.1:58181231-58181250 None:intergenic 50.0%
TTAGAGTCTACCGCTGGACT+AGG + chr2.1:58180865-58180884 None:intergenic 50.0%
!! CGTTCTCTAGGGGTTGATGT+TGG - chr2.1:58181390-58181409 MS.gene00187:intron 50.0%
AAAGCCGTGTCTCGAGTGAG+TGG - chr2.1:58180892-58180911 MS.gene00187:CDS 55.0%
ACCTCCTAGTCCTAGTCCAG+CGG - chr2.1:58180852-58180871 MS.gene00187:CDS 55.0%
CTTGGAGAGAGGATACACCG+TGG - chr2.1:58181488-58181507 MS.gene00187:CDS 55.0%
GAGTGGTATAGACCCTGCTG+AGG - chr2.1:58180909-58180928 MS.gene00187:CDS 55.0%
GGACGAAGATTTCCCTCAGC+AGG + chr2.1:58180925-58180944 None:intergenic 55.0%
TCTGCTGCCAATAGGGTTGG+AGG + chr2.1:58180444-58180463 None:intergenic 55.0%
! TCTACCGCTGGACTAGGACT+AGG + chr2.1:58180859-58180878 None:intergenic 55.0%
! ACCGCTGGACTAGGACTAGG+AGG + chr2.1:58180856-58180875 None:intergenic 60.0%
! GCTGGACTAGGACTAGGAGG+TGG + chr2.1:58180853-58180872 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 58180230 58181797 58180230 ID=MS.gene00187
chr2.1 mRNA 58180230 58181797 58180230 ID=MS.gene00187.t1;Parent=MS.gene00187
chr2.1 exon 58181730 58181797 58181730 ID=MS.gene00187.t1.exon1;Parent=MS.gene00187.t1
chr2.1 CDS 58181730 58181797 58181730 ID=cds.MS.gene00187.t1;Parent=MS.gene00187.t1
chr2.1 exon 58181412 58181650 58181412 ID=MS.gene00187.t1.exon2;Parent=MS.gene00187.t1
chr2.1 CDS 58181412 58181650 58181412 ID=cds.MS.gene00187.t1;Parent=MS.gene00187.t1
chr2.1 exon 58180230 58181320 58180230 ID=MS.gene00187.t1.exon3;Parent=MS.gene00187.t1
chr2.1 CDS 58180230 58181320 58180230 ID=cds.MS.gene00187.t1;Parent=MS.gene00187.t1
Gene Sequence

>MS.gene00187

ATGAAGATTTTGCATCAGGACTCAACTTCCTTCCTCTACAAGGGTCTTCTTTTCTCAGGAAAAATCTGGTATGCAATCTTGTTCAAAGTTTCATTTAGATGTTGCAATTGACATGAGGTTTATCTAATAATGTACTATTCTAATAAGCATTAGACCTTCCATTGGTGCTTTGTACTCAGACACAGATGAGTCATTAAACGTAAAACTGTTGCCTCCAACCCTATTGGCAGCAGAAAAGGAAGAAGCCAAGGCTGTATTAACCTTGTTTTTGAAGAAACGAGGTTTGAGCAATGCAAATGCAGCAAGAACGATTAACAAGTCAGATCCTTTTATTGATCACCTTCTCTCGAAGCTTCACTCTAAACACAAAACTTGGTACCTTTCAGGTTTGGTTGCTACAAATTAATCACTTCTATTTAATAACTTTCTTTTTGCATTGGATCCTGTTAATCACAGTCTCATTGACATAATAATCAGGGAGAGAGCTTACAACTCTTGAGATCAGGGATGCTCTTATCTCTTATCTCGAATCACTTTACGAAGAGCATGGAGAAATTCTAGTGGATGTAGTGGAAAACTATCCAAATCCACCTGTTAAGGATAAATCGGACGCACCAATTCCACCTCCTAGTCCTAGTCCAGCGGTAGACTCTAAGAAAGTTAAAGCCGTGTCTCGAGTGAGTGGTATAGACCCTGCTGAGGGAAATCTTCGTCCTCATATTGCTTATCTGATGGAACTCGGAATGAATATTGACCAGATTAGGACTATTATGCGACGATTCCCAGCTTTTGCCTACTATAGTTTGGAGGGTAAAATTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGAGTACCAAAAGAAAAAATTCTCATTATCCTCACTAAAAGGCCTCAATTATGTGGAATCAGTCTATCTAAAAATCTTAAGCCCACCATGAAATTCTTTGAATCTTTAGGTGTTGACAAGGAACAATGGGCGAAAGTGATCTACCGTTTCCCAGCCCTGCTAACTTATAGCACGCAGAAGATTAATGAAAGTGTAGATTTTCTCCGCGAATTTGGTGTCTCAGAAGAGAACATAGGTAAGATTTTAACTCGCTGCCCAACTATTGTTAGTTACAGTGTAGAGGACAATCTTCGACCGACAGCAATGTACTTCCGTTCTCTAGGGGTTGATGTTGGCCTTCTTCTATTCAATTGTCCACAAAATTTTGGTCTTAGCATTGAGGCCAATATAAAGCCCGTAACACAATTTTTCTTGGAGAGAGGATACACCGTGGAAGAAATTGGGATTATGATTATGAGATATGGAATGTTGTACACATTCAGCTTGACTGAGAATTTGATGCCGAAATGGGATTACTTTTTGACTATGGATTACCCAAAATCTGAGTTGGTTAAATTCCCTCAATTTTTTGGATACAGTTTAGAGCAAAGAATTAAACCGAGATATGCACGCGTGAAAAATTCTGGGGTGAGATTACTGTTGAATCAGGTTCTTTCACTGTCAAGCAGCAACTTTGACGAGATCTTAAGAAAGAAAATAAAGAAAATGCAAGTTGATTAG
Protein sequence

>MS.gene00187.t1

MKILHQDSTSFLYKGLLFSGKICIRPSIGALYSDTDESLNVKLLPPTLLAAEKEEAKAVLTLFLKKRGLSNANAARTINKSDPFIDHLLSKLHSKHKTWYLSGRELTTLEIRDALISYLESLYEEHGEILVDVVENYPNPPVKDKSDAPIPPPSPSPAVDSKKVKAVSRVSGIDPAEGNLRPHIAYLMELGMNIDQIRTIMRRFPAFAYYSLEGKIKPVVEFFLELGVPKEKILIILTKRPQLCGISLSKNLKPTMKFFESLGVDKEQWAKVIYRFPALLTYSTQKINESVDFLREFGVSEENIGKILTRCPTIVSYSVEDNLRPTAMYFRSLGVDVGLLLFNCPQNFGLSIEANIKPVTQFFLERGYTVEEIGIMIMRYGMLYTFSLTENLMPKWDYFLTMDYPKSELVKFPQFFGYSLEQRIKPRYARVKNSGVRLLLNQVLSLSSSNFDEILRKKIKKMQVD