AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001885

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001885.t1 MTR_7g026400 86.702 376 39 3 1 368 69 441 0.0 605
MS.gene001885.t1 MTR_0450s0040 47.841 301 115 6 1 300 86 345 1.25e-72 230
MS.gene001885.t1 MTR_6g088950 61.111 90 33 2 1 88 86 175 5.30e-25 101
MS.gene001885.t1 MTR_4g121020 34.568 162 92 2 1 148 9 170 9.77e-25 106
MS.gene001885.t1 MTR_4g121020 35.220 159 89 2 1 145 113 271 1.66e-24 105
MS.gene001885.t1 MTR_4g121020 35.220 159 89 2 1 145 113 271 1.76e-24 105
MS.gene001885.t1 MTR_2g034960 38.125 160 87 4 1 148 111 270 2.25e-24 105
MS.gene001885.t1 MTR_4g021760 34.524 168 97 4 1 166 92 248 1.27e-23 100
MS.gene001885.t1 MTR_1g032570 31.771 192 106 5 1 168 24 214 9.24e-23 100
MS.gene001885.t1 MTR_1g032570 31.771 192 106 5 1 168 93 283 2.07e-22 99.4
MS.gene001885.t1 MTR_4g021855 35.443 158 83 2 1 154 91 233 2.64e-22 96.3
MS.gene001885.t1 MTR_1g013170 33.529 170 83 3 2 148 88 250 3.93e-22 98.2
MS.gene001885.t1 MTR_8g079940 33.155 187 107 5 1 169 107 293 4.22e-22 98.2
MS.gene001885.t1 MTR_3g086100 33.152 184 103 4 1 164 24 207 7.35e-22 97.4
MS.gene001885.t1 MTR_4g021790 34.810 158 84 2 1 154 91 233 9.30e-22 94.4
MS.gene001885.t1 MTR_3g106220 37.037 162 78 4 9 148 98 257 1.11e-21 97.4
MS.gene001885.t1 MTR_3g086100 33.152 184 103 4 1 164 95 278 1.64e-21 96.7
MS.gene001885.t1 MTR_4g021845 35.211 142 73 2 1 138 91 217 1.81e-21 92.0
MS.gene001885.t1 MTR_7g117705 32.632 190 92 5 2 167 89 266 3.44e-21 95.1
MS.gene001885.t1 MTR_2g450070 31.461 178 91 4 8 156 107 282 1.44e-20 94.0
MS.gene001885.t1 MTR_2g450070 31.461 178 91 4 8 156 107 282 1.82e-20 93.6
MS.gene001885.t1 MTR_1g013180 33.898 177 87 3 2 155 239 408 3.67e-19 89.7
MS.gene001885.t1 MTR_4g131580 34.395 157 90 2 10 153 108 264 4.16e-19 89.4
MS.gene001885.t1 MTR_4g131600 31.915 188 101 4 10 170 111 298 7.03e-19 88.6
MS.gene001885.t1 MTR_6g089050 48.039 102 49 3 1 99 32 132 1.39e-18 82.4
MS.gene001885.t1 MTR_6g045327 33.540 161 75 3 1 151 96 234 2.50e-18 86.3
MS.gene001885.t1 MTR_3g102590 32.867 143 60 2 1 143 91 197 3.70e-18 83.2
MS.gene001885.t1 MTR_3g102600 29.801 151 60 2 1 151 41 145 7.43e-18 80.9
MS.gene001885.t1 MTR_3g102600 29.801 151 60 2 1 151 90 194 1.59e-17 81.3
MS.gene001885.t1 MTR_4g064730 50.000 64 32 0 82 145 124 187 2.30e-17 82.4
MS.gene001885.t1 MTR_7g089010 48.529 68 35 0 78 145 80 147 2.75e-17 82.0
MS.gene001885.t1 MTR_4g131570 32.099 162 94 3 10 155 108 269 6.24e-17 82.8
MS.gene001885.t1 MTR_3g102590 31.159 138 59 2 1 138 91 192 1.61e-15 74.7
MS.gene001885.t1 MTR_0054s0010 45.361 97 49 1 1 93 21 117 1.93e-15 73.9
MS.gene001885.t1 MTR_2g090675 32.353 170 101 5 52 220 125 281 1.46e-14 75.1
MS.gene001885.t1 MTR_4g078810 57.407 54 23 0 88 141 157 210 2.25e-14 74.7
MS.gene001885.t1 MTR_4g098870 47.619 63 33 0 88 150 309 371 1.06e-13 72.8
MS.gene001885.t1 MTR_3g102600 27.857 140 55 2 1 140 41 134 1.15e-13 68.2
MS.gene001885.t1 MTR_4g098870 47.619 63 33 0 88 150 309 371 1.21e-13 72.8
MS.gene001885.t1 MTR_4g098870 47.619 63 33 0 88 150 329 391 1.21e-13 72.8
MS.gene001885.t1 MTR_4g098870 47.619 63 33 0 88 150 329 391 1.34e-13 72.4
MS.gene001885.t1 MTR_4g098870 47.619 63 33 0 88 150 348 410 1.38e-13 72.4
MS.gene001885.t1 MTR_5g014040 50.000 60 30 0 88 147 310 369 2.01e-13 72.0
MS.gene001885.t1 MTR_3g102600 27.857 140 55 2 1 140 90 183 2.40e-13 68.6
MS.gene001885.t1 MTR_8g105600 31.373 153 95 3 1 144 91 242 1.11e-11 66.6
MS.gene001885.t1 MTR_5g014040 46.154 65 30 1 88 147 270 334 1.85e-11 65.9
MS.gene001885.t1 MTR_5g014040 46.154 65 30 1 88 147 310 374 1.92e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001885.t1 AT3G16857 34.555 191 85 4 1 157 45 229 4.53e-26 110
MS.gene001885.t1 AT3G16857 34.555 191 85 4 1 157 115 299 6.79e-26 110
MS.gene001885.t1 AT3G16857 34.555 191 85 4 1 157 115 299 9.25e-26 109
MS.gene001885.t1 AT5G07210 54.455 101 43 1 68 165 198 298 5.79e-25 107
MS.gene001885.t1 AT5G07210 54.455 101 43 1 68 165 206 306 5.89e-25 107
MS.gene001885.t1 AT4G31920 33.553 152 101 0 1 152 95 246 3.68e-22 98.6
MS.gene001885.t1 AT2G01760 34.706 170 89 3 1 148 25 194 1.05e-21 95.1
MS.gene001885.t1 AT2G01760 35.329 167 86 3 1 145 90 256 4.83e-21 94.0
MS.gene001885.t1 AT2G27070 42.857 133 72 2 37 165 169 301 7.28e-21 94.7
MS.gene001885.t1 AT2G25180 35.000 160 92 2 1 148 95 254 8.90e-21 94.4
MS.gene001885.t1 AT2G01760 34.706 170 89 3 1 148 118 287 8.94e-21 93.6
MS.gene001885.t1 AT5G58080 30.851 188 104 4 10 179 104 283 1.24e-19 91.3
MS.gene001885.t1 AT5G49240 33.121 157 82 3 1 138 120 272 9.60e-19 86.3
MS.gene001885.t1 AT5G05090 47.826 69 36 0 77 145 69 137 9.70e-18 82.8
MS.gene001885.t1 AT3G10760 46.479 71 38 0 75 145 91 161 1.87e-17 83.2
MS.gene001885.t1 AT1G67710 35.714 168 90 5 1 151 24 190 1.97e-17 84.0
MS.gene001885.t1 AT1G67710 35.714 168 90 5 1 151 15 181 2.06e-17 84.0
MS.gene001885.t1 AT1G67710 35.119 168 91 5 1 151 89 255 3.10e-17 83.6
MS.gene001885.t1 AT2G40970 50.000 68 34 0 78 145 94 161 3.80e-17 80.9
MS.gene001885.t1 AT5G59570 36.607 112 60 2 47 147 88 199 4.17e-17 81.6
MS.gene001885.t1 AT5G59570 36.607 112 60 2 47 147 88 199 4.17e-17 81.6
MS.gene001885.t1 AT3G46640 48.529 68 33 1 80 145 133 200 4.87e-17 81.6
MS.gene001885.t1 AT3G46640 48.529 68 33 1 80 145 133 200 4.87e-17 81.6
MS.gene001885.t1 AT3G46640 48.529 68 33 1 80 145 133 200 7.61e-17 81.3
MS.gene001885.t1 AT5G44190 59.016 61 23 1 81 141 141 199 5.96e-16 79.0
MS.gene001885.t1 AT5G44190 59.016 61 23 1 81 141 141 199 6.34e-16 78.6
MS.gene001885.t1 AT2G20570 55.556 54 24 0 88 141 152 205 9.54e-14 72.8
MS.gene001885.t1 AT4G18020 42.105 76 41 1 89 164 296 368 1.33e-13 72.4
MS.gene001885.t1 AT4G18020 42.105 76 41 1 89 164 296 368 1.33e-13 72.4
MS.gene001885.t1 AT4G18020 42.105 76 41 1 89 164 296 368 1.33e-13 72.4
MS.gene001885.t1 AT4G18020 42.105 76 41 1 89 164 296 368 1.33e-13 72.4
MS.gene001885.t1 AT4G18020 42.105 76 41 1 89 164 296 368 1.33e-13 72.4
MS.gene001885.t1 AT4G18020 42.105 76 41 1 89 164 296 368 1.33e-13 72.4
MS.gene001885.t1 AT4G18020 42.105 76 41 1 89 164 296 368 1.33e-13 72.4
MS.gene001885.t1 AT4G18020 42.105 76 41 1 89 164 296 368 1.33e-13 72.4
MS.gene001885.t1 AT4G18020 42.105 76 41 1 89 164 296 368 1.33e-13 72.4
MS.gene001885.t1 AT4G18020 42.105 76 41 1 89 164 296 368 1.33e-13 72.4
MS.gene001885.t1 AT4G18020 42.105 76 41 1 89 164 296 368 1.33e-13 72.4
MS.gene001885.t1 AT2G20570 56.863 51 22 0 91 141 171 221 4.52e-13 70.5

Find 59 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGAAGACTTCAAAGATAT+TGG 0.226006 7.3:+73389815 MS.gene001885:CDS
CAATTTCCTTATATACAAAA+AGG 0.233477 7.3:+73391233 MS.gene001885:CDS
GAACTATGAACAATGGATTA+AGG 0.243060 7.3:+73391636 MS.gene001885:CDS
ACTATTAGAAACCAAAATTA+TGG 0.270397 7.3:+73391509 MS.gene001885:CDS
TATGCCAGTGTTTGCAAATA+TGG 0.272397 7.3:-73391146 None:intergenic
AAATGTAGCAAGTCACTTAC+AGG 0.277878 7.3:+73390802 MS.gene001885:CDS
CAACATGATGTGTTGGAAAT+TGG 0.289454 7.3:-73391208 None:intergenic
CTGCTTGCTATTGACCAAAT+TGG 0.292299 7.3:+73390040 MS.gene001885:CDS
TTTGGAATTCAGCTGAATAA+TGG 0.295030 7.3:+73391593 MS.gene001885:CDS
GTAAGAAATAACAATCCTTT+TGG 0.299725 7.3:+73391575 MS.gene001885:CDS
ACTTACTTTCCAATCCAATT+TGG 0.301438 7.3:-73390054 None:intergenic
TTAAGAAACAAAAGCTTGTT+TGG 0.309580 7.3:+73389993 MS.gene001885:CDS
AGGGCTGGCTCTTCAAGATT+TGG 0.319081 7.3:+73391253 MS.gene001885:CDS
TTGAAGTCTTCAGCACAAAA+AGG 0.324880 7.3:-73389806 None:intergenic
ATCTCGAAGACACTAGAAAA+TGG 0.329147 7.3:+73389761 MS.gene001885:CDS
TTCAAGATTTGGAACAAGTT+AGG 0.330501 7.3:+73391264 MS.gene001885:CDS
GGCTGTGCCAAAGAAAATTC+TGG 0.364480 7.3:+73390748 MS.gene001885:CDS
AACTATGAACAATGGATTAA+GGG 0.373260 7.3:+73391637 MS.gene001885:CDS
CTGAAGACTTCAAAGATATT+GGG 0.389220 7.3:+73389816 MS.gene001885:CDS
AGCTATGATCAAAACAGGTT+TGG 0.409010 7.3:+73391332 MS.gene001885:CDS
GGAGCAGGAATGGTTGGAAT+TGG 0.414917 7.3:+73391614 MS.gene001885:CDS
AGTGCAAATAACAATGAAAC+GGG 0.416165 7.3:+73391665 MS.gene001885:CDS
TAGAGCTGAACAAGGATTGA+TGG 0.418771 7.3:+73391433 MS.gene001885:CDS
CTGCGAGATGTTGCAGAGAA+AGG 0.423104 7.3:+73391005 MS.gene001885:CDS
GTGTTGGAAATTGGTTGAAA+TGG 0.423793 7.3:-73391199 None:intergenic
AGATATTGGGAAATATGTTA+TGG 0.426061 7.3:+73389829 MS.gene001885:CDS
ATAACAGCTATGATCAAAAC+AGG 0.431496 7.3:+73391327 MS.gene001885:CDS
TGCTATTGACCAAATTGGAT+TGG 0.439605 7.3:+73390045 MS.gene001885:CDS
CAGTTATGTCTGAAGACAAT+AGG 0.455126 7.3:+73389729 None:intergenic
ACATCAGAAGTAAATTTATG+AGG 0.469959 7.3:-73391554 None:intergenic
CTTCTTCAAGTTTCTTAACA+AGG 0.470322 7.3:+73391465 MS.gene001885:CDS
CTTGAATATCTCTCTCTCCT+TGG 0.473875 7.3:-73389967 None:intergenic
TAGTGCAAATAACAATGAAA+CGG 0.476245 7.3:+73391664 MS.gene001885:CDS
GATTTGGAACAAGTTAGGCT+TGG 0.484973 7.3:+73391269 MS.gene001885:CDS
AGTGTCTTCGAGATTAAACT+TGG 0.495636 7.3:-73389752 None:intergenic
GTTGCAGAGAAAGGAATGGT+TGG 0.508048 7.3:+73391014 MS.gene001885:CDS
TAGGCTTGGAAAATCAAAGT+TGG 0.508790 7.3:+73391283 MS.gene001885:CDS
CTCACAGAGCTCTAAGATCA+AGG 0.512314 7.3:+73391045 MS.gene001885:CDS
ACAATGAAACGGGGAGGGAG+TGG 0.514140 7.3:+73391675 MS.gene001885:CDS
AATAATGGAGCAGGAATGGT+TGG 0.529804 7.3:+73391608 MS.gene001885:CDS
TTCTTCAAGTTTCTTAACAA+GGG 0.536372 7.3:+73391466 MS.gene001885:CDS
GCTGAATAATGGAGCAGGAA+TGG 0.538668 7.3:+73391604 MS.gene001885:CDS
ATTCAGCTGAATAATGGAGC+AGG 0.542016 7.3:+73391599 MS.gene001885:CDS
TTATTCAGCTGAATTCCAAA+AGG 0.546390 7.3:-73391590 None:intergenic
AGTGGAAGAGAGTTTCTAGC+AGG 0.567708 7.3:+73391693 MS.gene001885:CDS
AATTGGTCAACATGATGTGT+TGG 0.569003 7.3:-73391215 None:intergenic
GCAGAGAAAGGAATGGTTGG+AGG 0.578705 7.3:+73391017 MS.gene001885:CDS
AGAAAGAGTAAAGAAAGCCA+AGG 0.579094 7.3:+73389950 MS.gene001885:CDS
ACTTCCATATTTGCAAACAC+TGG 0.582579 7.3:+73391142 MS.gene001885:CDS
GGAATTGGAACTATGAACAA+TGG 0.591999 7.3:+73391629 MS.gene001885:CDS
GTTATTCTCTGCAACAACAT+CGG 0.600928 7.3:-73391309 None:intergenic
TCTATATGATGAAAAGCTAG+TGG 0.601942 7.3:-73391414 None:intergenic
TCATCATATAGAGCTGAACA+AGG 0.608032 7.3:+73391425 MS.gene001885:CDS
GTTTGCAAATATGGAAGTGT+TGG 0.612895 7.3:-73391137 None:intergenic
ACACTGGCATATCAAACAAG+AGG 0.654807 7.3:+73391158 MS.gene001885:CDS
CAAATAACAATGAAACGGGG+AGG 0.675066 7.3:+73391669 MS.gene001885:CDS
AAATAACAATGAAACGGGGA+GGG 0.679481 7.3:+73391670 MS.gene001885:CDS
AGATGTTGCAGAGAAAGGAA+TGG 0.689031 7.3:+73391010 MS.gene001885:CDS
GTGCAAATAACAATGAAACG+GGG 0.779545 7.3:+73391666 MS.gene001885:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAAAATTTGGATAAT+AGG - chr7.3:73390615-73390634 None:intergenic 10.0%
!! ATGATGATATTATAATATTA+TGG - chr7.3:73390857-73390876 None:intergenic 10.0%
!! TGTGTATTAATATTAAAATT+TGG - chr7.3:73390623-73390642 None:intergenic 10.0%
!!! ATCTTTTAAAAATATTTGAA+AGG + chr7.3:73390078-73390097 MS.gene001885:intron 10.0%
!! AACAATTTAGTAATTTACAT+AGG + chr7.3:73390459-73390478 MS.gene001885:intron 15.0%
!! AATTTCCTTATATACAAAAA+GGG + chr7.3:73391234-73391253 MS.gene001885:CDS 15.0%
!! TGTTATTAGTATATTTACTT+AGG - chr7.3:73390443-73390462 None:intergenic 15.0%
!!! ATTTTACAGTGATATTATAA+TGG + chr7.3:73390302-73390321 MS.gene001885:intron 15.0%
!! ACTATTAGAAACCAAAATTA+TGG + chr7.3:73391509-73391528 MS.gene001885:CDS 20.0%
!! ATATCACTGTAAAATAATAG+CGG - chr7.3:73390297-73390316 None:intergenic 20.0%
!! CAATTTCCTTATATACAAAA+AGG + chr7.3:73391233-73391252 MS.gene001885:CDS 20.0%
!!! CTTTTTGTATATAAGGAAAT+TGG - chr7.3:73391235-73391254 None:intergenic 20.0%
!!! TTAACAAGGGATTTTAAATT+TGG + chr7.3:73391479-73391498 MS.gene001885:CDS 20.0%
! ACATCAGAAGTAAATTTATG+AGG - chr7.3:73391557-73391576 None:intergenic 25.0%
! AGATATTGGGAAATATGTTA+TGG + chr7.3:73389829-73389848 MS.gene001885:CDS 25.0%
! AGTTAAAATCCCATATGATA+TGG - chr7.3:73390339-73390358 None:intergenic 25.0%
! ATTTGACAACCATATCATAT+GGG + chr7.3:73390327-73390346 MS.gene001885:intron 25.0%
! TAGTGCAAATAACAATGAAA+CGG + chr7.3:73391664-73391683 MS.gene001885:CDS 25.0%
!! GTAAGAAATAACAATCCTTT+TGG + chr7.3:73391575-73391594 MS.gene001885:CDS 25.0%
!! TGCTTTTAACACCATAATTT+TGG - chr7.3:73391523-73391542 None:intergenic 25.0%
!! TTAAGAAACAAAAGCTTGTT+TGG + chr7.3:73389993-73390012 MS.gene001885:CDS 25.0%
!! TTATCTTTTCCCTAATTTAG+AGG + chr7.3:73390727-73390746 MS.gene001885:intron 25.0%
!! TTCTTCAAGTTTCTTAACAA+GGG + chr7.3:73391466-73391485 MS.gene001885:CDS 25.0%
!!! AACTATGAACAATGGATTAA+GGG + chr7.3:73391637-73391656 MS.gene001885:CDS 25.0%
!!! GATAATAGGTAGTTTGTTTT+TGG - chr7.3:73390601-73390620 None:intergenic 25.0%
AAAATGGCTCAACCAATTAA+TGG - chr7.3:73390162-73390181 None:intergenic 30.0%
ACACCACTATCATTGTTTAT+AGG + chr7.3:73390417-73390436 MS.gene001885:intron 30.0%
ACTTACTTTCCAATCCAATT+TGG - chr7.3:73390057-73390076 None:intergenic 30.0%
AGTGCAAATAACAATGAAAC+GGG + chr7.3:73391665-73391684 MS.gene001885:CDS 30.0%
ATAACAGCTATGATCAAAAC+AGG + chr7.3:73391327-73391346 MS.gene001885:CDS 30.0%
CATTTGACAACCATATCATA+TGG + chr7.3:73390326-73390345 MS.gene001885:intron 30.0%
CCAACAATGAAATATACTTG+AGG + chr7.3:73390235-73390254 MS.gene001885:intron 30.0%
CCTCAAGTATATTTCATTGT+TGG - chr7.3:73390238-73390257 None:intergenic 30.0%
CTGAAGACTTCAAAGATATT+GGG + chr7.3:73389816-73389835 MS.gene001885:CDS 30.0%
TACTTCTTCCAACCATTAAT+TGG + chr7.3:73390147-73390166 MS.gene001885:intron 30.0%
TCTATATGATGAAAAGCTAG+TGG - chr7.3:73391417-73391436 None:intergenic 30.0%
TTATTCAGCTGAATTCCAAA+AGG - chr7.3:73391593-73391612 None:intergenic 30.0%
TTTCATTGTTGGATTGATAG+TGG - chr7.3:73390227-73390246 None:intergenic 30.0%
! AGAAACATTTTGTGGAGATA+AGG - chr7.3:73390022-73390041 None:intergenic 30.0%
! AGAGCCAACAACTTAATTTT+AGG - chr7.3:73390666-73390685 None:intergenic 30.0%
! AGCCAACAACTTAATTTTAG+GGG - chr7.3:73390664-73390683 None:intergenic 30.0%
! AGTTTAACTTTGTAACCTCA+AGG - chr7.3:73390367-73390386 None:intergenic 30.0%
! ATGATCTCCAGAATTTTCTT+TGG - chr7.3:73390758-73390777 None:intergenic 30.0%
! CTTCTTCAAGTTTCTTAACA+AGG + chr7.3:73391465-73391484 MS.gene001885:CDS 30.0%
! GAGCCAACAACTTAATTTTA+GGG - chr7.3:73390665-73390684 None:intergenic 30.0%
! GAGTTTTTCGCTTGAAAAAT+TGG - chr7.3:73391377-73391396 None:intergenic 30.0%
! GTTTAACTTTGTAACCTCAA+GGG - chr7.3:73390366-73390385 None:intergenic 30.0%
! TACCCCTAAAATTAAGTTGT+TGG + chr7.3:73390659-73390678 MS.gene001885:intron 30.0%
! TTCAAGATTTGGAACAAGTT+AGG + chr7.3:73391264-73391283 MS.gene001885:CDS 30.0%
! TTTGGAATTCAGCTGAATAA+TGG + chr7.3:73391593-73391612 MS.gene001885:CDS 30.0%
! TTTTCGCTTGAAAAATTGGA+AGG - chr7.3:73391373-73391392 None:intergenic 30.0%
!! GAACTATGAACAATGGATTA+AGG + chr7.3:73391636-73391655 MS.gene001885:CDS 30.0%
AAATAACAATGAAACGGGGA+GGG + chr7.3:73391670-73391689 MS.gene001885:CDS 35.0%
AAATGTAGCAAGTCACTTAC+AGG + chr7.3:73390802-73390821 MS.gene001885:CDS 35.0%
AATTGGTCAACATGATGTGT+TGG - chr7.3:73391218-73391237 None:intergenic 35.0%
ACTTCCATATTTGCAAACAC+TGG + chr7.3:73391142-73391161 MS.gene001885:CDS 35.0%
AGAAAGAGTAAAGAAAGCCA+AGG + chr7.3:73389950-73389969 MS.gene001885:CDS 35.0%
AGCTATGATCAAAACAGGTT+TGG + chr7.3:73391332-73391351 MS.gene001885:CDS 35.0%
AGGCCTATAAACAATGATAG+TGG - chr7.3:73390423-73390442 None:intergenic 35.0%
AGTGTCTTCGAGATTAAACT+TGG - chr7.3:73389755-73389774 None:intergenic 35.0%
ATCTCGAAGACACTAGAAAA+TGG + chr7.3:73389761-73389780 MS.gene001885:CDS 35.0%
CAACATGATGTGTTGGAAAT+TGG - chr7.3:73391211-73391230 None:intergenic 35.0%
CAGACAATACCTCAGAAAAA+TGG - chr7.3:73390178-73390197 None:intergenic 35.0%
GCGAAAAACTCATTCAATGA+TGG + chr7.3:73391386-73391405 MS.gene001885:CDS 35.0%
GCTGAAGACTTCAAAGATAT+TGG + chr7.3:73389815-73389834 MS.gene001885:CDS 35.0%
GGAATTGGAACTATGAACAA+TGG + chr7.3:73391629-73391648 MS.gene001885:CDS 35.0%
GTGCAAATAACAATGAAACG+GGG + chr7.3:73391666-73391685 MS.gene001885:CDS 35.0%
GTGTTGGAAATTGGTTGAAA+TGG - chr7.3:73391202-73391221 None:intergenic 35.0%
GTTATTCTCTGCAACAACAT+CGG - chr7.3:73391312-73391331 None:intergenic 35.0%
TAGGCTTGGAAAATCAAAGT+TGG + chr7.3:73391283-73391302 MS.gene001885:CDS 35.0%
TATGCCAGTGTTTGCAAATA+TGG - chr7.3:73391149-73391168 None:intergenic 35.0%
TCATCATATAGAGCTGAACA+AGG + chr7.3:73391425-73391444 MS.gene001885:CDS 35.0%
TCCTTATATACAAAAAGGGC+TGG + chr7.3:73391238-73391257 MS.gene001885:CDS 35.0%
TGCTATTGACCAAATTGGAT+TGG + chr7.3:73390045-73390064 MS.gene001885:CDS 35.0%
TTAAACTCTTACCACTAAGC+TGG + chr7.3:73390380-73390399 MS.gene001885:intron 35.0%
TTGAAGTCTTCAGCACAAAA+AGG - chr7.3:73389809-73389828 None:intergenic 35.0%
! ACATTTTCTCTGTTCACGTT+AGG - chr7.3:73390788-73390807 None:intergenic 35.0%
! CAATGCTTCTTTTCGTTCTT+AGG - chr7.3:73389926-73389945 None:intergenic 35.0%
! GTTTGCAAATATGGAAGTGT+TGG - chr7.3:73391140-73391159 None:intergenic 35.0%
! TAGCAAGCAGAAACATTTTG+TGG - chr7.3:73390030-73390049 None:intergenic 35.0%
ACACTGGCATATCAAACAAG+AGG + chr7.3:73391158-73391177 MS.gene001885:CDS 40.0%
AGATGTTGCAGAGAAAGGAA+TGG + chr7.3:73391010-73391029 MS.gene001885:CDS 40.0%
CAAATAACAATGAAACGGGG+AGG + chr7.3:73391669-73391688 MS.gene001885:CDS 40.0%
CTTGAATATCTCTCTCTCCT+TGG - chr7.3:73389970-73389989 None:intergenic 40.0%
TAACTTTGTAACCTCAAGGG+AGG - chr7.3:73390363-73390382 None:intergenic 40.0%
TAGAGCTGAACAAGGATTGA+TGG + chr7.3:73391433-73391452 MS.gene001885:CDS 40.0%
TGGCTCAACCAATTAATGGT+TGG - chr7.3:73390158-73390177 None:intergenic 40.0%
TTGGCACAGCCTCTAAATTA+GGG - chr7.3:73390739-73390758 None:intergenic 40.0%
TTTGGCACAGCCTCTAAATT+AGG - chr7.3:73390740-73390759 None:intergenic 40.0%
! AATAATGGAGCAGGAATGGT+TGG + chr7.3:73391608-73391627 MS.gene001885:CDS 40.0%
! ATTCAGCTGAATAATGGAGC+AGG + chr7.3:73391599-73391618 MS.gene001885:CDS 40.0%
! GATTTGGAACAAGTTAGGCT+TGG + chr7.3:73391269-73391288 MS.gene001885:CDS 40.0%
! GCCAGCCCTTTTTGTATATA+AGG - chr7.3:73391242-73391261 None:intergenic 40.0%
!! CTGCTTGCTATTGACCAAAT+TGG + chr7.3:73390040-73390059 MS.gene001885:CDS 40.0%
!! TTCTGAGGTATTGTCTGCTT+TGG + chr7.3:73390181-73390200 MS.gene001885:intron 40.0%
!!! GATTTTAACTTCCTCCCTTG+AGG + chr7.3:73390349-73390368 MS.gene001885:intron 40.0%
!!! TTGGTTGAGCCATTTTTCTG+AGG + chr7.3:73390166-73390185 MS.gene001885:intron 40.0%
GGCTGTGCCAAAGAAAATTC+TGG + chr7.3:73390748-73390767 MS.gene001885:CDS 45.0%
GTTGCAGAGAAAGGAATGGT+TGG + chr7.3:73391014-73391033 MS.gene001885:CDS 45.0%
! GCTGAATAATGGAGCAGGAA+TGG + chr7.3:73391604-73391623 MS.gene001885:CDS 45.0%
!! AGTGGAAGAGAGTTTCTAGC+AGG + chr7.3:73391693-73391712 MS.gene001885:CDS 45.0%
!! CTCACAGAGCTCTAAGATCA+AGG + chr7.3:73391045-73391064 MS.gene001885:CDS 45.0%
CTGCGAGATGTTGCAGAGAA+AGG + chr7.3:73391005-73391024 MS.gene001885:CDS 50.0%
GCAGAGAAAGGAATGGTTGG+AGG + chr7.3:73391017-73391036 MS.gene001885:CDS 50.0%
GGAGCAGGAATGGTTGGAAT+TGG + chr7.3:73391614-73391633 MS.gene001885:CDS 50.0%
!! AGGGCTGGCTCTTCAAGATT+TGG + chr7.3:73391253-73391272 MS.gene001885:CDS 50.0%
ACAATGAAACGGGGAGGGAG+TGG + chr7.3:73391675-73391694 MS.gene001885:CDS 55.0%
TGCACTAGCTGCCAGCTTAG+TGG - chr7.3:73390394-73390413 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 73389734 73391724 73389734 ID=MS.gene001885
chr7.3 mRNA 73389734 73391724 73389734 ID=MS.gene001885.t1;Parent=MS.gene001885
chr7.3 exon 73389734 73390070 73389734 ID=MS.gene001885.t1.exon1;Parent=MS.gene001885.t1
chr7.3 CDS 73389734 73390070 73389734 ID=cds.MS.gene001885.t1;Parent=MS.gene001885.t1
chr7.3 exon 73390747 73390823 73390747 ID=MS.gene001885.t1.exon2;Parent=MS.gene001885.t1
chr7.3 CDS 73390747 73390823 73390747 ID=cds.MS.gene001885.t1;Parent=MS.gene001885.t1
chr7.3 exon 73390990 73391724 73390990 ID=MS.gene001885.t1.exon3;Parent=MS.gene001885.t1
chr7.3 CDS 73390990 73391724 73390990 ID=cds.MS.gene001885.t1;Parent=MS.gene001885.t1
Gene Sequence

>MS.gene001885

ATGTCTGAAGACAATAGGCCAAGTTTAATCTCGAAGACACTAGAAAATGGAGCTGCACAGTACATTGTGAAACCTTTTTGTGCTGAAGACTTCAAAGATATTGGGAAATATGTTATGGAAGCAAAGAAAGAGAAACTTTTCATTGAAAGTTTATTTGTGAGAAGCGAAGAAGAAGAGATATCAAGTGAACCTAAGAACGAAAAGAAGCATTGCAAGAGAAAGAGTAAAGAAAGCCAAGGAGAGAGAGATATTCAAGTTGTTAAGAAACAAAAGCTTGTTTGGACACCTTATCTCCACAAAATGTTTCTGCTTGCTATTGACCAAATTGGATTGGAAAGTAAGTCATCTTTTAAAAATATTTGAAAGGCATTTTAAATCTAAATAGTTTTAAATATACTTTTTAGTTTTATGTGTACTTCTTCCAACCATTAATTGGTTGAGCCATTTTTCTGAGGTATTGTCTGCTTTGGATCTTATATAAATGTATATGCCACTATCAATCCAACAATGAAATATACTTGAGGTCAAAAGAAATATAATAGACTATTTTAATGTACACACCGCTATTATTTTACAGTGATATTATAATGGTCATTTGACAACCATATCATATGGGATTTTAACTTCCTCCCTTGAGGTTACAAAGTTAAACTCTTACCACTAAGCTGGCAGCTAGTGCACAAACACCACTATCATTGTTTATAGGCCTAAGTAAATATACTAATAACAATTTAGTAATTTACATAGGACACACTTAATTTTGCAAATGTTTTCACATCAGACATATGTTTTATATTTTACACGATGAACATAAATACAATTAATATCAAATTACATGCATTAATAATAATTTACATATATTGTCCAAAAACAAACTACCTATTATCCAAATTTTAATATTAATACACACTTTGCATTTGTTTCATACCCCTAAAATTAAGTTGTTGGCTCTTTCATTATATATATAGCTAACTACAATGAGTTTTCTTGTGTTTATCTTTTCCCTAATTTAGAGGCTGTGCCAAAGAAAATTCTGGAGATCATGAATATACCTAACGTGAACAGAGAAAATGTAGCAAGTCACTTACAGGTTTTTCTTCTCAATTTACTTCATATATTTCCATAATATTATAATATCATCATTAGAAGACTGAATGATAATGTTGATAATTTTTCTGTCTCTAATTTTTGTTAACTTTTTCTAGTATATCTTACAAACTATATAATGCTTTAGTATATGATCACAATACTTGCAGAAATATCGCATATTTCTGCGAGATGTTGCAGAGAAAGGAATGGTTGGAGGCATATCTCACAGAGCTCTAAGATCAAGGTTTGCATCAAGTCTTCTGATGTCTATGATAAGAGAAATCGAAGAAAAAAGAACAAACAAACTTCATGCGCCAACACTTCCATATTTGCAAACACTGGCATATCAAACAAGAGGTGCAAACAATGTTTTTAACCATTTCAACCAATTTCCAACACATCATGTTGACCAATTTCCTTATATACAAAAAGGGCTGGCTCTTCAAGATTTGGAACAAGTTAGGCTTGGAAAATCAAAGTTGGAAGCCGATGTTGTTGCAGAGAATAACAGCTATGATCAAAACAGGTTTGGAATAAGCTCTTCAAGCCTTCCAATTTTTCAAGCGAAAAACTCATTCAATGATGGTGCTTCCACTAGCTTTTCATCATATAGAGCTGAACAAGGATTGATGGTTTCTTCTTCTTCTTCAAGTTTCTTAACAAGGGATTTTAAATTTGGTGATATTACTATTAGAAACCAAAATTATGGTGTTAAAAGCACTAATGTCATGCCTCATAAATTTACTTCTGATGTAAGAAATAACAATCCTTTTGGAATTCAGCTGAATAATGGAGCAGGAATGGTTGGAATTGGAACTATGAACAATGGATTAAGGGCTTCTAGTGCAAATAACAATGAAACGGGGAGGGAGTGGAAGAGAGTTTCTAGCAGGATCAGTTAA
Protein sequence

>MS.gene001885.t1

MSEDNRPSLISKTLENGAAQYIVKPFCAEDFKDIGKYVMEAKKEKLFIESLFVRSEEEEISSEPKNEKKHCKRKSKESQGERDIQVVKKQKLVWTPYLHKMFLLAIDQIGLEKAVPKKILEIMNIPNVNRENVASHLQKYRIFLRDVAEKGMVGGISHRALRSRFASSLLMSMIREIEEKRTNKLHAPTLPYLQTLAYQTRGANNVFNHFNQFPTHHVDQFPYIQKGLALQDLEQVRLGKSKLEADVVAENNSYDQNRFGISSSSLPIFQAKNSFNDGASTSFSSYRAEQGLMVSSSSSSFLTRDFKFGDITIRNQNYGVKSTNVMPHKFTSDVRNNNPFGIQLNNGAGMVGIGTMNNGLRASSANNNETGREWKRVSSRIS