AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001887

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001887.t1 MTR_7g026400 88.782 312 32 3 1 311 69 378 1.21e-180 512
MS.gene001887.t1 MTR_0450s0040 49.333 300 112 5 1 300 86 345 1.66e-78 243
MS.gene001887.t1 MTR_6g088950 61.111 90 34 1 1 89 86 175 5.43e-27 105
MS.gene001887.t1 MTR_1g032570 33.854 192 103 5 1 169 24 214 1.71e-26 109
MS.gene001887.t1 MTR_1g032570 33.854 192 103 5 1 169 93 283 3.15e-26 108
MS.gene001887.t1 MTR_4g121020 34.545 165 83 2 1 146 9 167 8.55e-26 107
MS.gene001887.t1 MTR_2g034960 38.217 157 86 3 1 146 111 267 1.12e-25 107
MS.gene001887.t1 MTR_4g121020 34.545 165 83 2 1 146 113 271 1.55e-25 107
MS.gene001887.t1 MTR_4g121020 34.545 165 83 2 1 146 113 271 1.58e-25 107
MS.gene001887.t1 MTR_1g013170 37.195 164 86 3 2 149 88 250 4.36e-24 102
MS.gene001887.t1 MTR_8g079940 35.829 187 103 4 1 170 107 293 4.83e-24 102
MS.gene001887.t1 MTR_3g106220 37.654 162 78 4 9 149 98 257 2.53e-23 100
MS.gene001887.t1 MTR_4g021760 34.104 173 92 5 1 167 92 248 3.18e-23 97.8
MS.gene001887.t1 MTR_3g086100 34.783 184 101 5 1 165 24 207 3.25e-23 99.8
MS.gene001887.t1 MTR_3g086100 34.783 184 101 5 1 165 95 278 7.26e-23 99.0
MS.gene001887.t1 MTR_7g117705 33.514 185 98 5 2 168 89 266 2.53e-22 97.1
MS.gene001887.t1 MTR_4g021855 35.220 159 83 3 1 155 91 233 5.35e-22 94.0
MS.gene001887.t1 MTR_4g021790 35.220 159 83 3 1 155 91 233 5.43e-22 93.6
MS.gene001887.t1 MTR_4g131600 37.791 172 80 5 10 156 111 280 8.42e-22 95.9
MS.gene001887.t1 MTR_4g021845 34.266 143 74 3 1 139 91 217 6.68e-21 89.4
MS.gene001887.t1 MTR_6g089050 54.902 102 43 3 1 100 32 132 1.14e-20 87.0
MS.gene001887.t1 MTR_2g450070 33.708 178 88 4 8 157 107 282 1.15e-20 92.8
MS.gene001887.t1 MTR_2g450070 33.708 178 88 4 8 157 107 282 1.42e-20 92.4
MS.gene001887.t1 MTR_1g013180 35.294 170 95 2 2 156 239 408 8.50e-20 90.1
MS.gene001887.t1 MTR_3g102590 32.639 144 60 1 1 144 91 197 1.40e-19 86.3
MS.gene001887.t1 MTR_4g131580 37.342 158 85 3 10 154 108 264 2.49e-19 88.6
MS.gene001887.t1 MTR_6g045327 33.987 153 86 3 1 152 96 234 5.34e-19 87.0
MS.gene001887.t1 MTR_4g131570 36.196 163 83 4 10 154 108 267 2.70e-18 85.5
MS.gene001887.t1 MTR_4g064730 51.562 64 31 0 83 146 124 187 3.19e-18 84.0
MS.gene001887.t1 MTR_7g089010 51.515 66 32 0 81 146 82 147 4.00e-18 83.2
MS.gene001887.t1 MTR_3g102600 51.562 64 31 0 89 152 82 145 2.00e-17 79.0
MS.gene001887.t1 MTR_3g102600 51.562 64 31 0 89 152 131 194 2.04e-17 80.1
MS.gene001887.t1 MTR_0054s0010 58.730 63 26 0 1 63 21 83 4.15e-17 77.8
MS.gene001887.t1 MTR_3g102590 32.374 139 57 2 1 139 91 192 7.29e-17 77.8
MS.gene001887.t1 MTR_2g090675 32.821 195 109 7 31 221 105 281 2.53e-16 79.3
MS.gene001887.t1 MTR_4g078810 56.250 64 22 1 79 142 153 210 1.19e-15 77.4
MS.gene001887.t1 MTR_4g098870 49.206 63 32 0 89 151 309 371 6.51e-14 72.4
MS.gene001887.t1 MTR_4g098870 49.206 63 32 0 89 151 329 391 6.71e-14 72.4
MS.gene001887.t1 MTR_4g098870 49.206 63 32 0 89 151 329 391 7.88e-14 72.4
MS.gene001887.t1 MTR_4g098870 49.206 63 32 0 89 151 348 410 8.05e-14 72.4
MS.gene001887.t1 MTR_5g014040 51.667 60 29 0 89 148 310 369 8.16e-14 72.0
MS.gene001887.t1 MTR_4g098870 49.206 63 32 0 89 151 309 371 8.47e-14 72.0
MS.gene001887.t1 MTR_3g102600 50.943 53 26 0 89 141 82 134 1.73e-13 67.0
MS.gene001887.t1 MTR_3g102600 50.943 53 26 0 89 141 131 183 1.81e-13 68.2
MS.gene001887.t1 MTR_8g105600 31.579 152 97 2 1 145 91 242 5.36e-13 69.7
MS.gene001887.t1 MTR_5g014040 47.692 65 29 1 89 148 270 334 8.67e-12 65.9
MS.gene001887.t1 MTR_5g014040 47.692 65 29 1 89 148 310 374 8.99e-12 65.9
MS.gene001887.t1 MTR_6g453220 63.636 44 16 0 106 149 379 422 1.26e-11 65.5
MS.gene001887.t1 MTR_5g041350 52.727 55 25 1 90 143 15 69 2.44e-11 64.3
MS.gene001887.t1 MTR_6g032990 52.727 55 25 1 90 143 42 96 2.53e-11 64.3
MS.gene001887.t1 MTR_4g086835 42.857 63 36 0 86 148 270 332 3.42e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001887.t1 AT3G16857 36.126 191 83 5 1 158 45 229 1.54e-27 112
MS.gene001887.t1 AT3G16857 35.938 192 82 5 1 158 115 299 2.43e-27 112
MS.gene001887.t1 AT3G16857 35.938 192 82 5 1 158 115 299 2.85e-27 112
MS.gene001887.t1 AT5G07210 56.436 101 42 1 68 166 198 298 6.99e-27 110
MS.gene001887.t1 AT5G07210 56.436 101 42 1 68 166 206 306 7.39e-27 110
MS.gene001887.t1 AT2G27070 35.437 206 91 5 1 166 98 301 1.02e-23 101
MS.gene001887.t1 AT2G25180 35.714 168 81 3 1 149 95 254 1.46e-23 101
MS.gene001887.t1 AT2G01760 34.731 167 88 3 1 146 25 191 6.18e-23 97.1
MS.gene001887.t1 AT2G01760 34.731 167 88 3 1 146 90 256 2.14e-22 96.7
MS.gene001887.t1 AT2G01760 34.731 167 88 3 1 146 118 284 3.69e-22 96.3
MS.gene001887.t1 AT4G31920 34.641 153 99 1 1 153 95 246 3.94e-21 94.0
MS.gene001887.t1 AT5G58080 30.859 256 129 8 10 226 104 350 1.52e-20 92.4
MS.gene001887.t1 AT5G59570 38.739 111 58 2 48 148 89 199 6.34e-19 85.5
MS.gene001887.t1 AT5G59570 38.739 111 58 2 48 148 89 199 6.34e-19 85.5
MS.gene001887.t1 AT5G49240 33.333 153 88 2 1 139 120 272 1.82e-18 84.3
MS.gene001887.t1 AT3G46640 37.838 111 63 2 42 146 90 200 1.94e-18 84.7
MS.gene001887.t1 AT3G46640 37.838 111 63 2 42 146 90 200 1.94e-18 84.7
MS.gene001887.t1 AT3G10760 50.000 66 33 0 81 146 96 161 2.58e-18 84.3
MS.gene001887.t1 AT3G46640 47.297 74 37 1 75 146 127 200 4.13e-18 83.6
MS.gene001887.t1 AT5G05090 50.000 66 33 0 81 146 72 137 4.71e-18 82.8
MS.gene001887.t1 AT2G40970 51.515 66 32 0 81 146 96 161 5.18e-18 82.0
MS.gene001887.t1 AT1G67710 36.047 172 85 5 1 152 24 190 1.97e-17 82.8
MS.gene001887.t1 AT5G44190 57.576 66 26 1 77 142 136 199 2.01e-17 82.4
MS.gene001887.t1 AT5G44190 57.576 66 26 1 77 142 136 199 2.03e-17 82.0
MS.gene001887.t1 AT1G67710 36.047 172 85 5 1 152 15 181 2.32e-17 82.4
MS.gene001887.t1 AT1G67710 36.047 172 85 5 1 152 89 255 2.51e-17 82.8
MS.gene001887.t1 AT2G20570 57.407 54 23 0 89 142 152 205 3.24e-14 73.2
MS.gene001887.t1 AT3G62670 34.211 152 90 4 1 142 117 268 7.24e-14 72.0
MS.gene001887.t1 AT4G18020 43.421 76 40 1 90 165 296 368 1.20e-13 71.6
MS.gene001887.t1 AT4G18020 43.421 76 40 1 90 165 296 368 1.20e-13 71.6
MS.gene001887.t1 AT4G18020 43.421 76 40 1 90 165 296 368 1.20e-13 71.6
MS.gene001887.t1 AT4G18020 43.421 76 40 1 90 165 296 368 1.20e-13 71.6
MS.gene001887.t1 AT4G18020 43.421 76 40 1 90 165 296 368 1.20e-13 71.6
MS.gene001887.t1 AT4G18020 36.752 117 60 4 49 165 266 368 1.24e-13 71.6
MS.gene001887.t1 AT4G18020 36.752 117 60 4 49 165 266 368 1.24e-13 71.6
MS.gene001887.t1 AT4G18020 36.752 117 60 4 49 165 266 368 1.24e-13 71.6
MS.gene001887.t1 AT4G18020 36.752 117 60 4 49 165 266 368 1.24e-13 71.6
MS.gene001887.t1 AT4G18020 36.752 117 60 4 49 165 266 368 1.24e-13 71.6
MS.gene001887.t1 AT4G18020 36.752 117 60 4 49 165 266 368 1.24e-13 71.6
MS.gene001887.t1 AT2G20570 58.824 51 21 0 92 142 171 221 1.53e-13 71.2
MS.gene001887.t1 AT3G04450 50.877 57 27 1 87 142 235 291 1.68e-11 64.3
MS.gene001887.t1 AT3G04450 50.877 57 27 1 87 142 235 291 2.05e-11 64.7
MS.gene001887.t1 AT3G04450 50.877 57 27 1 87 142 195 251 2.13e-11 64.7
MS.gene001887.t1 AT3G04450 50.877 57 27 1 87 142 195 251 2.13e-11 64.7
MS.gene001887.t1 AT3G04030 50.000 54 27 0 90 143 45 98 2.57e-11 64.3
MS.gene001887.t1 AT5G29000 45.070 71 37 2 87 156 228 297 3.69e-11 63.9
MS.gene001887.t1 AT5G29000 45.070 71 37 2 87 156 185 254 3.93e-11 63.5
MS.gene001887.t1 AT5G29000 45.070 71 37 2 87 156 185 254 3.93e-11 63.5
MS.gene001887.t1 AT5G29000 45.070 71 37 2 87 156 228 297 4.58e-11 63.2
MS.gene001887.t1 AT3G04030 50.909 55 26 1 90 143 45 99 5.18e-11 63.5
MS.gene001887.t1 AT3G04030 50.909 55 26 1 90 143 45 99 5.41e-11 63.2

Find 43 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACAAGGGATGTTAAATT+TGG 0.181109 7.3:+73355972 MS.gene001887:CDS
GCTGAAGACTTCAAAGATAT+TGG 0.226006 7.3:+73354123 MS.gene001887:CDS
CAATTCCCTTATATACAAAA+AGG 0.231143 7.3:+73355729 MS.gene001887:CDS
ACTTACTTTCCAATCCAATT+TGG 0.246719 7.3:-73354365 None:intergenic
CTGCTTGCTATTAACCAAAT+TGG 0.262572 7.3:+73354351 MS.gene001887:CDS
AAATGTAGCAAGTCACTTAC+AGG 0.277878 7.3:+73355297 MS.gene001887:CDS
AGGGTTGGCTCTTCAAGATT+TGG 0.280377 7.3:+73355749 MS.gene001887:CDS
CAACATGATGTGTTGGAAAT+TGG 0.289454 7.3:-73355704 None:intergenic
TTAAGAAACAAAAGCTTGTT+TGG 0.309580 7.3:+73354304 MS.gene001887:CDS
TTGAAGTCTTCAGCACAAAA+AGG 0.324880 7.3:-73354114 None:intergenic
TTCAAGATTTGGAACAAGTT+AGG 0.330501 7.3:+73355760 MS.gene001887:CDS
ATATCGAAGACACTAGAAAA+TGG 0.350449 7.3:+73354069 MS.gene001887:CDS
GGTTGTGCCAAAGAAAATTC+TGG 0.378890 7.3:+73355243 MS.gene001887:CDS
CTGCGAGTTGTTGCAGAGAA+AGG 0.387972 7.3:+73355501 MS.gene001887:CDS
CTGAAGACTTCAAAGATATT+GGG 0.389220 7.3:+73354124 MS.gene001887:CDS
TGCTATTAACCAAATTGGAT+TGG 0.390260 7.3:+73354356 MS.gene001887:CDS
GCCGATGTTGTGGTGAATAA+TGG 0.404099 7.3:+73355804 MS.gene001887:CDS
TAGAGGTGAACAAGAATTGA+TGG 0.418771 7.3:+73355926 MS.gene001887:CDS
GAATATCTCTCTCTCCTTGT+GGG 0.420135 7.3:-73354275 None:intergenic
TTCGAAACCTACTTTGATCA+TGG 0.422300 7.3:-73355827 None:intergenic
GTGTTGGAAATTGGTTGAAA+TGG 0.423793 7.3:-73355695 None:intergenic
AGATATTGGGAAATATGTTA+TGG 0.426061 7.3:+73354137 MS.gene001887:CDS
CAGTTATGTCTGAAGACAAT+AGG 0.455126 7.3:+73354037 None:intergenic
CATCTTCAAGTTTCTTAACA+AGG 0.470322 7.3:+73355958 MS.gene001887:CDS
GATTTGGAACAAGTTAGGCT+TGG 0.484973 7.3:+73355765 MS.gene001887:CDS
AGTGTCTTCGATATTAAACT+TGG 0.495638 7.3:-73354060 None:intergenic
TAGGCTTGGAAAATCAAAGT+TGG 0.508790 7.3:+73355779 MS.gene001887:CDS
CTCACAGAGCTCTAAGATCA+AGG 0.512314 7.3:+73355541 MS.gene001887:CDS
GTTTGCAAATATTCAAGTGT+TGG 0.526217 7.3:-73355633 None:intergenic
ATCTTCAAGTTTCTTAACAA+GGG 0.536372 7.3:+73355959 MS.gene001887:CDS
ACTTGAATATTTGCAAACAC+TGG 0.540410 7.3:+73355638 MS.gene001887:CDS
GTTGCAGAGAAAGGAATGGT+TGG 0.544357 7.3:+73355510 MS.gene001887:CDS
GCCATTATTCACCACAACAT+CGG 0.557790 7.3:-73355805 None:intergenic
TGAATATCTCTCTCTCCTTG+TGG 0.559941 7.3:-73354276 None:intergenic
TCTATATGATGAAAAGCTAG+TGG 0.562508 7.3:-73355907 None:intergenic
GCAGAGAAAGGAATGGTTGG+AGG 0.578705 7.3:+73355513 MS.gene001887:CDS
ATAATGGCCATGATCAAAGT+AGG 0.586226 7.3:+73355820 MS.gene001887:CDS
AAGAGTAAAGAATGCCCACA+AGG 0.590540 7.3:+73354261 MS.gene001887:CDS
AATTGGTCAACATGATGTGT+TGG 0.598362 7.3:-73355711 None:intergenic
ATTTCTCTTATCATAGACAT+CGG 0.611317 7.3:-73355579 None:intergenic
ACACTGGCATATCAAACAAG+AGG 0.654807 7.3:+73355654 MS.gene001887:CDS
AGTTGTTGCAGAGAAAGGAA+TGG 0.674879 7.3:+73355506 MS.gene001887:CDS
AAAGTTGGAAGCCGATGTTG+TGG 0.735018 7.3:+73355794 MS.gene001887:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAAAATTTGGATAAT+AGG - chr7.3:73355110-73355129 None:intergenic 10.0%
!! TGTGTATTAATATTAAAATT+TGG - chr7.3:73355118-73355137 None:intergenic 10.0%
!!! ATCTTTTAAAAATATTTGAA+AGG + chr7.3:73354389-73354408 MS.gene001887:intron 10.0%
!!! TGTTATTTGTATATTTACTT+AGG - chr7.3:73354938-73354957 None:intergenic 15.0%
!! AATTCCCTTATATACAAAAA+GGG + chr7.3:73355730-73355749 MS.gene001887:CDS 20.0%
!!! ATTTTACGGTGATATTATAA+TGG + chr7.3:73354797-73354816 MS.gene001887:intron 20.0%
!!! GAGTTTTTTACTTGAAAAAA+TGG - chr7.3:73355870-73355889 None:intergenic 20.0%
!!! TTTTTACTTGAAAAAATGGA+AGG - chr7.3:73355866-73355885 None:intergenic 20.0%
! AGATATTGGGAAATATGTTA+TGG + chr7.3:73354137-73354156 MS.gene001887:CDS 25.0%
! AGTTAAAATCCCATATGATA+TGG - chr7.3:73354834-73354853 None:intergenic 25.0%
! ATTTCTCTTATCATAGACAT+CGG - chr7.3:73355582-73355601 None:intergenic 25.0%
! ATTTGACAACCATATCATAT+GGG + chr7.3:73354822-73354841 MS.gene001887:intron 25.0%
! CAATTCCCTTATATACAAAA+AGG + chr7.3:73355729-73355748 MS.gene001887:CDS 25.0%
! CTTTGGATCTTAAATAAATG+GGG + chr7.3:73354509-73354528 MS.gene001887:intron 25.0%
! GTAAAAAACTCATTCAATGA+TGG + chr7.3:73355879-73355898 MS.gene001887:CDS 25.0%
! TTAACAAGGGATGTTAAATT+TGG + chr7.3:73355972-73355991 MS.gene001887:CDS 25.0%
!! ATCTTCAAGTTTCTTAACAA+GGG + chr7.3:73355959-73355978 MS.gene001887:CDS 25.0%
!! CTTTTTGTATATAAGGGAAT+TGG - chr7.3:73355731-73355750 None:intergenic 25.0%
!! GCTTTGGATCTTAAATAAAT+GGG + chr7.3:73354508-73354527 MS.gene001887:intron 25.0%
!! TGCTTTGGATCTTAAATAAA+TGG + chr7.3:73354507-73354526 MS.gene001887:intron 25.0%
!! TTAAGAAACAAAAGCTTGTT+TGG + chr7.3:73354304-73354323 MS.gene001887:CDS 25.0%
!!! GATAATAGGTAGTTTGTTTT+TGG - chr7.3:73355096-73355115 None:intergenic 25.0%
!!! TACACATCGCTATTATTTTA+CGG + chr7.3:73354783-73354802 MS.gene001887:intron 25.0%
ACTTACTTTCCAATCCAATT+TGG - chr7.3:73354368-73354387 None:intergenic 30.0%
ACTTGAATATTTGCAAACAC+TGG + chr7.3:73355638-73355657 MS.gene001887:CDS 30.0%
AGTGGCGTATACATTTATAT+GGG - chr7.3:73354704-73354723 None:intergenic 30.0%
AGTGTCTTCGATATTAAACT+TGG - chr7.3:73354063-73354082 None:intergenic 30.0%
ATATCGAAGACACTAGAAAA+TGG + chr7.3:73354069-73354088 MS.gene001887:CDS 30.0%
CATTTGACAACCATATCATA+TGG + chr7.3:73354821-73354840 MS.gene001887:intron 30.0%
CCAACAATGAAATATACTTG+AGG + chr7.3:73354730-73354749 MS.gene001887:intron 30.0%
CCTCAAGTATATTTCATTGT+TGG - chr7.3:73354733-73354752 None:intergenic 30.0%
CTGAAGACTTCAAAGATATT+GGG + chr7.3:73354124-73354143 MS.gene001887:CDS 30.0%
GTTTGCAAATATTCAAGTGT+TGG - chr7.3:73355636-73355655 None:intergenic 30.0%
TACTTCTTCCAACCATTAAT+CGG + chr7.3:73354458-73354477 MS.gene001887:intron 30.0%
TAGTGGCGTATACATTTATA+TGG - chr7.3:73354705-73354724 None:intergenic 30.0%
TCTATATGATGAAAAGCTAG+TGG - chr7.3:73355910-73355929 None:intergenic 30.0%
TGCTATTAACCAAATTGGAT+TGG + chr7.3:73354356-73354375 MS.gene001887:CDS 30.0%
TTTCATTGTTGGATTGATAG+TGG - chr7.3:73354722-73354741 None:intergenic 30.0%
! AGAAACATTTTGTGGAGATA+AGG - chr7.3:73354333-73354352 None:intergenic 30.0%
! AGAGCCAACAACTTAATTTT+AGG - chr7.3:73355161-73355180 None:intergenic 30.0%
! AGCCAACAACTTAATTTTAG+GGG - chr7.3:73355159-73355178 None:intergenic 30.0%
! AGTTTAACTTTGTAACCTCA+AGG - chr7.3:73354862-73354881 None:intergenic 30.0%
! ATGATCTCCAGAATTTTCTT+TGG - chr7.3:73355253-73355272 None:intergenic 30.0%
! CAAGACTTCTTTTTGTTCTT+AGG - chr7.3:73354234-73354253 None:intergenic 30.0%
! CATCTTCAAGTTTCTTAACA+AGG + chr7.3:73355958-73355977 MS.gene001887:CDS 30.0%
! CCAACCCTTTTTGTATATAA+GGG - chr7.3:73355737-73355756 None:intergenic 30.0%
! GAGCCAACAACTTAATTTTA+GGG - chr7.3:73355160-73355179 None:intergenic 30.0%
! GTTTAACTTTGTAACCTCAA+GGG - chr7.3:73354861-73354880 None:intergenic 30.0%
! TACCCCTAAAATTAAGTTGT+TGG + chr7.3:73355154-73355173 MS.gene001887:intron 30.0%
! TTATCTTTTCCCTAATTCAG+AGG + chr7.3:73355222-73355241 MS.gene001887:intron 30.0%
! TTCAAGATTTGGAACAAGTT+AGG + chr7.3:73355760-73355779 MS.gene001887:CDS 30.0%
!!! ACTAGCTTTTCATCATATAG+AGG + chr7.3:73355909-73355928 MS.gene001887:CDS 30.0%
AAAATGGCTCAACCGATTAA+TGG - chr7.3:73354473-73354492 None:intergenic 35.0%
AAACACATTGTCATTGCATC+TGG - chr7.3:73354614-73354633 None:intergenic 35.0%
AAATAAATGGGGTAGCACTT+TGG + chr7.3:73354520-73354539 MS.gene001887:intron 35.0%
AAATGTAGCAAGTCACTTAC+AGG + chr7.3:73355297-73355316 MS.gene001887:CDS 35.0%
AACACATTGTCATTGCATCT+GGG - chr7.3:73354613-73354632 None:intergenic 35.0%
AATTGGTCAACATGATGTGT+TGG - chr7.3:73355714-73355733 None:intergenic 35.0%
ACACCGCTATCATTGTTTAT+AGG + chr7.3:73354912-73354931 MS.gene001887:intron 35.0%
AGGCCTATAAACAATGATAG+CGG - chr7.3:73354918-73354937 None:intergenic 35.0%
ATAATGGCCATGATCAAAGT+AGG + chr7.3:73355820-73355839 MS.gene001887:CDS 35.0%
CAACATGATGTGTTGGAAAT+TGG - chr7.3:73355707-73355726 None:intergenic 35.0%
CAGACAATACCTCAGAAAAA+TGG - chr7.3:73354489-73354508 None:intergenic 35.0%
CCCTTATATACAAAAAGGGT+TGG + chr7.3:73355734-73355753 MS.gene001887:CDS 35.0%
GCTGAAGACTTCAAAGATAT+TGG + chr7.3:73354123-73354142 MS.gene001887:CDS 35.0%
GTGTTGGAAATTGGTTGAAA+TGG - chr7.3:73355698-73355717 None:intergenic 35.0%
TAGAGGTGAACAAGAATTGA+TGG + chr7.3:73355926-73355945 MS.gene001887:CDS 35.0%
TAGGCTTGGAAAATCAAAGT+TGG + chr7.3:73355779-73355798 MS.gene001887:CDS 35.0%
TTAAACTCTTACCACTAAGC+TGG + chr7.3:73354875-73354894 MS.gene001887:intron 35.0%
TTCGAAACCTACTTTGATCA+TGG - chr7.3:73355830-73355849 None:intergenic 35.0%
TTGAAGTCTTCAGCACAAAA+AGG - chr7.3:73354117-73354136 None:intergenic 35.0%
! ACATTTTCTCTGGTCAAGTT+AGG - chr7.3:73355283-73355302 None:intergenic 35.0%
! GCCAACCCTTTTTGTATATA+AGG - chr7.3:73355738-73355757 None:intergenic 35.0%
! TAGCAAGCAGAAACATTTTG+TGG - chr7.3:73354341-73354360 None:intergenic 35.0%
!! ATCTATCTTGGTGCCATTAA+TGG - chr7.3:73354579-73354598 None:intergenic 35.0%
!! CTGCTTGCTATTAACCAAAT+TGG + chr7.3:73354351-73354370 MS.gene001887:CDS 35.0%
AAGAGTAAAGAATGCCCACA+AGG + chr7.3:73354261-73354280 MS.gene001887:CDS 40.0%
ACACTGGCATATCAAACAAG+AGG + chr7.3:73355654-73355673 MS.gene001887:CDS 40.0%
ACCAAGATAGATGTGTTGTG+TGG + chr7.3:73354587-73354606 MS.gene001887:intron 40.0%
AGTTGTTGCAGAGAAAGGAA+TGG + chr7.3:73355506-73355525 MS.gene001887:CDS 40.0%
CATTAAGTCTGGGCCATTAA+TGG + chr7.3:73354563-73354582 MS.gene001887:intron 40.0%
CATTTATATGGGTAGCACTC+TGG - chr7.3:73354693-73354712 None:intergenic 40.0%
GAATATCTCTCTCTCCTTGT+GGG - chr7.3:73354278-73354297 None:intergenic 40.0%
GCAATGACAATGTGTTTGTG+TGG + chr7.3:73354617-73354636 MS.gene001887:intron 40.0%
GCCATTATTCACCACAACAT+CGG - chr7.3:73355808-73355827 None:intergenic 40.0%
GGTTGTGCCAAAGAAAATTC+TGG + chr7.3:73355243-73355262 MS.gene001887:CDS 40.0%
TAACTTTGTAACCTCAAGGG+AGG - chr7.3:73354858-73354877 None:intergenic 40.0%
TGAATATCTCTCTCTCCTTG+TGG - chr7.3:73354279-73354298 None:intergenic 40.0%
TTGGCACAACCTCTGAATTA+GGG - chr7.3:73355234-73355253 None:intergenic 40.0%
TTTGGCACAACCTCTGAATT+AGG - chr7.3:73355235-73355254 None:intergenic 40.0%
TTTGTGTGGCCCAGATTTAA+TGG + chr7.3:73354631-73354650 MS.gene001887:intron 40.0%
! GATTTGGAACAAGTTAGGCT+TGG + chr7.3:73355765-73355784 MS.gene001887:CDS 40.0%
!! TAATGACACGGTGCCATTAA+TGG - chr7.3:73354548-73354567 None:intergenic 40.0%
!! TAGCACTTTGGTGCCATTAA+TGG + chr7.3:73354532-73354551 MS.gene001887:intron 40.0%
!! TTCTGAGGTATTGTCTGCTT+TGG + chr7.3:73354492-73354511 MS.gene001887:intron 40.0%
!!! GATTTTAACTTCCTCCCTTG+AGG + chr7.3:73354844-73354863 MS.gene001887:intron 40.0%
!!! GTGACTTGCTACATTTTCTC+TGG - chr7.3:73355293-73355312 None:intergenic 40.0%
AAAGTTGGAAGCCGATGTTG+TGG + chr7.3:73355794-73355813 MS.gene001887:CDS 45.0%
ATGGCCCAGACTTAATGACA+CGG - chr7.3:73354560-73354579 None:intergenic 45.0%
GCCACACAACACATCTATCT+TGG - chr7.3:73354591-73354610 None:intergenic 45.0%
GCCGATGTTGTGGTGAATAA+TGG + chr7.3:73355804-73355823 MS.gene001887:CDS 45.0%
GTTGCAGAGAAAGGAATGGT+TGG + chr7.3:73355510-73355529 MS.gene001887:CDS 45.0%
TGGCTCAACCGATTAATGGT+TGG - chr7.3:73354469-73354488 None:intergenic 45.0%
! TAATGGCACCGTGCCATTAA+TGG - chr7.3:73354647-73354666 None:intergenic 45.0%
!! AGGGTTGGCTCTTCAAGATT+TGG + chr7.3:73355749-73355768 MS.gene001887:CDS 45.0%
!! CTCACAGAGCTCTAAGATCA+AGG + chr7.3:73355541-73355560 MS.gene001887:CDS 45.0%
!! TAATGGCACGGTGCCATTAA+TGG + chr7.3:73354648-73354667 MS.gene001887:intron 45.0%
!! TAGCACTCTGGTGCCATTAA+TGG - chr7.3:73354681-73354700 None:intergenic 45.0%
!!! TCGGTTGAGCCATTTTTCTG+AGG + chr7.3:73354477-73354496 MS.gene001887:intron 45.0%
CTGCGAGTTGTTGCAGAGAA+AGG + chr7.3:73355501-73355520 MS.gene001887:CDS 50.0%
GCAGAGAAAGGAATGGTTGG+AGG + chr7.3:73355513-73355532 MS.gene001887:CDS 50.0%
GTGGCCCAGATTTAATGGCA+CGG + chr7.3:73354636-73354655 MS.gene001887:intron 50.0%
! GGCACCGTGCCATTAAATCT+GGG - chr7.3:73354643-73354662 None:intergenic 50.0%
! GGCACCGTGTCATTAAGTCT+GGG + chr7.3:73354553-73354572 MS.gene001887:intron 50.0%
! TGGCACCGTGCCATTAAATC+TGG - chr7.3:73354644-73354663 None:intergenic 50.0%
! TGGCACCGTGTCATTAAGTC+TGG + chr7.3:73354552-73354571 MS.gene001887:intron 50.0%
TGCACTAGCTGCCAGCTTAG+TGG - chr7.3:73354889-73354908 None:intergenic 55.0%
!! GCACGGTGCCATTAATGGCA+CGG + chr7.3:73354653-73354672 MS.gene001887:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 73354042 73356004 73354042 ID=MS.gene001887
chr7.3 mRNA 73354042 73356004 73354042 ID=MS.gene001887.t1;Parent=MS.gene001887
chr7.3 exon 73354042 73354381 73354042 ID=MS.gene001887.t1.exon1;Parent=MS.gene001887.t1
chr7.3 CDS 73354042 73354381 73354042 ID=cds.MS.gene001887.t1;Parent=MS.gene001887.t1
chr7.3 exon 73355242 73355318 73355242 ID=MS.gene001887.t1.exon2;Parent=MS.gene001887.t1
chr7.3 CDS 73355242 73355318 73355242 ID=cds.MS.gene001887.t1;Parent=MS.gene001887.t1
chr7.3 exon 73355486 73356004 73355486 ID=MS.gene001887.t1.exon3;Parent=MS.gene001887.t1
chr7.3 CDS 73355486 73356004 73355486 ID=cds.MS.gene001887.t1;Parent=MS.gene001887.t1
Gene Sequence

>MS.gene001887

ATGTCTGAAGACAATAGGCCAAGTTTAATATCGAAGACACTAGAAAATGGAGCTGCACAATACATTGTGAAACCTTTTTGTGCTGAAGACTTCAAAGATATTGGGAAATATGTTATGGAAGCAAAGAAAGATAAACTTTTCATTGAAAGTTTATTTGTAAAAAGCGAAGAACAAGAGACATCAAGTGAGCCTAAGAACAAAAAGAAGTCTTGCAAGAGAAAGAGTAAAGAATGCCCACAAGGAGAGAGAGATATTCAAGTTGTTAAGAAACAAAAGCTTGTTTGGACACCTTATCTCCACAAAATGTTTCTGCTTGCTATTAACCAAATTGGATTGGAAAGTAAGTCATCTTTTAAAAATATTTGAAAGGCTTTTTAAATCTAAATAGTTTTAAATATACTTTTAAGTTTTATGTGTACTTCTTCCAACCATTAATCGGTTGAGCCATTTTTCTGAGGTATTGTCTGCTTTGGATCTTAAATAAATGGGGTAGCACTTTGGTGCCATTAATGGCACCGTGTCATTAAGTCTGGGCCATTAATGGCACCAAGATAGATGTGTTGTGTGGCCCAGATGCAATGACAATGTGTTTGTGTGGCCCAGATTTAATGGCACGGTGCCATTAATGGCACGGTGCCATTAATGGCACCAGAGTGCTACCCATATAAATGTATACGCCACTATCAATCCAACAATGAAATATACTTGAGGTCAAAAGAAATATAATAGACTATTTTAATGTACACATCGCTATTATTTTACGGTGATATTATAATGGTCATTTGACAACCATATCATATGGGATTTTAACTTCCTCCCTTGAGGTTACAAAGTTAAACTCTTACCACTAAGCTGGCAGCTAGTGCACTAACACCGCTATCATTGTTTATAGGCCTAAGTAAATATACAAATAACAATTTAGTAATTTACATATGACACACTTAATTTTGCAAATGTTTTCACATCAGACATATGTTTTATATTTTACACGATGAACATAAATACAATTAATAACAAATTACATGCATTAATAATAATTTACATATATTTTCCAAAAACAAACTACCTATTATCCAAATTTTAATATTAATACACACTTTGCATTTGTTTCATACCCCTAAAATTAAGTTGTTGGCTCTTTCATTATATATATAGCTAACTACAATGAGTTTTCTTGTGTTTATCTTTTCCCTAATTCAGAGGTTGTGCCAAAGAAAATTCTGGAGATCATGAATATACCTAACTTGACCAGAGAAAATGTAGCAAGTCACTTACAGGTTTTTCTTCTCAATTTACTTCATATATTTCAATAATATTATAATATCATCATTAGAAGACTGAATGATAATGTTGATAATTTTTCTGTCACTAATTTTTGTCGTTAACTTTTTCTAGTATATCTTGCAAACTATAATGTTTTAGTATATGATCACAATACTTGCAGAAATATCGCATATTTCTGCGAGTTGTTGCAGAGAAAGGAATGGTTGGAGGCATATCTCACAGAGCTCTAAGATCAAGGTTTGCATCAAGTCTTCCGATGTCTATGATAAGAGAAATCGAAGAAAAAAGAGCAAACAAACTTCATGCGCCAACACTTGAATATTTGCAAACACTGGCATATCAAACAAGAGGTGCAAACAATGTTTTTAACCATTTCAACCAATTTCCAACACATCATGTTGACCAATTCCCTTATATACAAAAAGGGTTGGCTCTTCAAGATTTGGAACAAGTTAGGCTTGGAAAATCAAAGTTGGAAGCCGATGTTGTGGTGAATAATGGCCATGATCAAAGTAGGTTTCGAATAAGCTCTTCAAACCTTCCATTTTTTCAAGTAAAAAACTCATTCAATGATGGTGCTTCCACTAGCTTTTCATCATATAGAGGTGAACAAGAATTGATGGTTTCTTCTTCATCTTCAAGTTTCTTAACAAGGGATGTTAAATTTGGTGACATTTGA
Protein sequence

>MS.gene001887.t1

MSEDNRPSLISKTLENGAAQYIVKPFCAEDFKDIGKYVMEAKKDKLFIESLFVKSEEQETSSEPKNKKKSCKRKSKECPQGERDIQVVKKQKLVWTPYLHKMFLLAINQIGLEKVVPKKILEIMNIPNLTRENVASHLQKYRIFLRVVAEKGMVGGISHRALRSRFASSLPMSMIREIEEKRANKLHAPTLEYLQTLAYQTRGANNVFNHFNQFPTHHVDQFPYIQKGLALQDLEQVRLGKSKLEADVVVNNGHDQSRFRISSSNLPFFQVKNSFNDGASTSFSSYRGEQELMVSSSSSSFLTRDVKFGDI