AlfalfaGEDB | MS.gene001893

M. sativa cultivar XinJiangDaYe / MS.gene001893

KEGG: K10875
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00176.26 PF00271.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001893.t1	RHN44868.1	88.9	1174	100	6	1	1173	1	1145	0.00E+00	2009.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001893.t1	Q9M297	47.9	1216	527	23	14	1143	59	1253	1.2e-294	1014.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001893.t1	G7L120	88.9	1174	100	6	1	1173	37	1181	0.0e+00	2009.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene001893.t1	TR	SNF2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001893.t1	MTR_7g026650	90.716	1174	79	6	1	1173	37	1181	0.0	2166
MS.gene001893.t1	MTR_3g071860	74.550	1222	231	15	1	1144	47	1266	0.0	1763
MS.gene001893.t1	MTR_1g081750	68.934	882	250	11	272	1145	251	1116	0.0	1185
MS.gene001893.t1	MTR_1g081750	57.692	208	77	4	1	202	47	249	5.59e-61	228
MS.gene001893.t1	MTR_5g083300	63.562	859	284	14	305	1143	490	1339	0.0	1065
MS.gene001893.t1	MTR_5g083300	45.357	280	126	6	12	276	95	362	1.20e-56	215
MS.gene001893.t1	MTR_5g083300	63.562	859	284	14	305	1143	453	1302	0.0	1064
MS.gene001893.t1	MTR_5g083300	45.357	280	126	6	12	276	58	325	1.42e-56	215
MS.gene001893.t1	MTR_7g026620	61.125	800	146	18	255	1048	4	644	0.0	847
MS.gene001893.t1	MTR_7g026550	44.519	593	95	13	436	1025	6	367	1.64e-123	385

Showing 1 to 10 of 58 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001893.t1	AT5G20420	61.253	782	282	11	375	1143	486	1259	0.0	943
MS.gene001893.t1	AT5G20420	37.363	273	134	8	14	271	59	309	9.02e-38	155
MS.gene001893.t1	AT3G42670	60.792	783	285	11	374	1143	480	1253	0.0	939
MS.gene001893.t1	AT3G42670	38.372	258	145	5	14	270	59	303	3.94e-42	169
MS.gene001893.t1	AT3G42670	60.792	783	285	11	374	1143	480	1253	0.0	939
MS.gene001893.t1	AT3G42670	38.372	258	145	5	14	270	59	303	3.94e-42	169
MS.gene001893.t1	AT3G42670	60.792	783	285	11	374	1143	480	1253	0.0	939
MS.gene001893.t1	AT3G42670	38.372	258	145	5	14	270	59	303	3.94e-42	169
MS.gene001893.t1	AT3G42670	60.637	785	285	11	374	1143	480	1255	0.0	939
MS.gene001893.t1	AT3G42670	38.372	258	145	5	14	270	59	303	3.68e-42	169

Showing 1 to 10 of 64 entries

Previous1 2 3 4 5 6 7Next

Find 189 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTTGAGAGAAAGCCC+TGG	0.619123	7.3:+73210384	MS.gene001893:CDS
AAACAAGTTGGAGCACAAAG+AGG	0.646088	7.3:+73209008	MS.gene001893:CDS
AAAGAGGTTCTGCTACTTAC+TGG	0.365932	7.3:+73211182	MS.gene001893:CDS
AAAGGGATCAATAGTACCAG+TGG	0.665894	7.3:+73208393	MS.gene001893:CDS
AAATACTTTCAATGGCAAAA+TGG	0.340921	7.3:+73211158	MS.gene001893:CDS
AAATAGTGATAGTTCTGAAG+TGG	0.562045	7.3:+73208141	MS.gene001893:CDS
AAATATCTTTCAAAGAAGAA+TGG	0.486991	7.3:+73208652	MS.gene001893:CDS
AAATGAAACCTTCTTTAAAA+AGG	0.228302	7.3:-73208269	None:intergenic
AAATGTTGTGAACTTCAAAT+CGG	0.456729	7.3:+73208369	MS.gene001893:CDS
AACCTATGTAACGTTTGGGT+TGG	0.506431	7.3:-73208522	None:intergenic

Showing 1 to 10 of 189 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACTCTATGAAAAATCTCAC+AGG	-	chr7.3:73211131-73211150	None:intergenic	30.0%
AATAGAAGTCATGTTCAAGA+AGG	+	chr7.3:73208877-73208896	MS.gene001893:CDS	30.0%
ACGTGTAGTGAAAAATGAAA+AGG	+	chr7.3:73211079-73211098	MS.gene001893:CDS	30.0%
AGTAAAATCCTCAATTCTGT+AGG	-	chr7.3:73210483-73210502	None:intergenic	30.0%
ATGCCATCAAATCTAATTGA+AGG	+	chr7.3:73208472-73208491	MS.gene001893:CDS	30.0%
CAAAGAGTTCAAAAAATGGA+AGG	+	chr7.3:73210125-73210144	MS.gene001893:CDS	30.0%
CGTACAAAATGTTACACAAT+AGG	+	chr7.3:73209644-73209663	MS.gene001893:intron	30.0%
CTTCAAAATAATAGTTGCGA+AGG	+	chr7.3:73208109-73208128	MS.gene001893:CDS	30.0%
GAAGGAATTCGTTTCAAAAA+AGG	+	chr7.3:73208817-73208836	MS.gene001893:CDS	30.0%
GTTTCTTCATCGTTAATAGT+TGG	-	chr7.3:73208988-73209007	None:intergenic	30.0%

Showing 1 to 10 of 268 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	73207656	73211730	73207656	ID=MS.gene001893
chr7.3	mRNA	73207656	73211730	73207656	ID=MS.gene001893.t1;Parent=MS.gene001893
chr7.3	exon	73207656	73207802	73207656	ID=MS.gene001893.t1.exon1;Parent=MS.gene001893.t1
chr7.3	CDS	73207656	73207802	73207656	ID=cds.MS.gene001893.t1;Parent=MS.gene001893.t1
chr7.3	exon	73207932	73209143	73207932	ID=MS.gene001893.t1.exon2;Parent=MS.gene001893.t1
chr7.3	CDS	73207932	73209143	73207932	ID=cds.MS.gene001893.t1;Parent=MS.gene001893.t1
chr7.3	exon	73209362	73209496	73209362	ID=MS.gene001893.t1.exon3;Parent=MS.gene001893.t1
chr7.3	CDS	73209362	73209496	73209362	ID=cds.MS.gene001893.t1;Parent=MS.gene001893.t1
chr7.3	exon	73209703	73211730	73209703	ID=MS.gene001893.t1.exon4;Parent=MS.gene001893.t1
chr7.3	CDS	73209703	73211730	73209703	ID=cds.MS.gene001893.t1;Parent=MS.gene001893.t1

Gene Sequence

>MS.gene001893

ATGGATACTCAACAAATGCAAACCCCTTTGTCATCTGATATTCGCATAAGATCAAGAAAAGCTACTTCATTTGATTGCTCTAACTTTTTACGACGCGGAATTGACATATCTATGCTCCAAATGTCAAATCGGGTTGGACCTATTCCAGTAAGTTTAATCTTTTAAATTATATATAATTTTTATTAAACTTCATTTCTTACTCTTATTCTTTTGTATGCATTTATGTCTTGATCTTTAATTTCTTCATATTTATTTATCTTTATGTACATTGTGTAGACGTCAATCGATGCAAGAATAAATTCAATCCAGAGACAACCTCACGAAGCTGATCAATGCTCATGTCAGTTTTATGTAAATTTCTACGAGGATCAAGGTTCCCTTGGTAGAAATATAAAAACACTTAATAAAGAGGTTTATGCGACTGGAATAGATCGAATTTTCATCCTCCAACGGCTTCAAAATAATAGTTGCGAAGGCTTAATAAAAAATAGTGATAGTTCTGAAGTGGTTAAGCCTTATAGGTGGGATTCATCTGAAGATTGCTCTTCATTATCAGAGTCTCGACTAATCTTGGGGAGATTTTTATCTGATCTTTCGTGGTTCGTTACAACATCCTTTTTAAAGAAGGTTTCATTTAGTATCCGATCTGTTCAAAATAAGATTATGTATCATGTTGTGGAAAACGATACTGATATTATTGATCCTTCTTTTATAAATGTTGTGAACTTCAAATCGGAAAAGGGATCAATAGTACCAGTGGTTTCTCTATTCGATATGTTTTGTGATTATGATAGAGAAGAAGATGAAGCTCCGCCAATGCCATCAAATCTAATTGAAGGCCTAAGACGATCAAAACGCAGGAATGTCCAACCCAAACGTTACATAGGTTCTTCTGTTGAGAAGTTGGAAGTTGGTACTTTTCGAACGAGGCCATACAAGATAGAGGATGGTAAGAGTGGTGAAAAGGTAGGCGATGCTGCTGGCGAAATTCCTTCAAAATATCTTTCAAAGAAGAATGGTGCTGCTGCTGGTGTTACAATATCAAGAGATGTCGAAGTTGATGATAATGTTACTTTGGGACATTATTATAGCTTCTGCAAAGAGAAGCCTGCAAGGAGGCGAATTCATGGTTCGGATGATATGGATTTTGAAACCAAATGGGAAGGAATTCGTTTCAAAAAAGGAGCTCAAACAAAAAGATACCATTCAATTTGTTTGACAAATAGAAGTCATGTTCAAGAAGGTGGCAGAACGTTAATTGGTGGCAGAAAATGGGAAATAATTGACACTTACATGAAGAATTTGGATAGTCTTCCAGTCGAAGAAGAGCCAACTATTAACGATGAAGAAACAAACAAGTTGGAGCACAAAGAGGAAGAAAAAGTGTCAAAAAGCGATGATGAGGAAGAAAATCCTGATGACTTGTCTGCCATTTGGGAAGAAATGGATACTGCTATGGCAGCAAGTTGTCTTCTTGATGGAACTGAGGTTTGTGACAATTGCTTTTACCTATATTTATAATATTAGTTTTGGAGTTTAATTTTAATACGCTATCGGTGTAAAAAGTTTTATACTACCAACAAATTACAACCTATTGTATTTTTTATGATTTGACAATAAATATGAATTAAATTATGTGATTTTGGTTTTATCTTCTTTTCTAAGGCTAAAGGCTGATTTAGTTCAACTGTTATATACCGTTGCAGGGTTCAAATGCAGAAGTTTTAGAAGACACCGAGGAAATTTGTGAACATAAATATACGTTCAATGAAGAAATTGGAATATTCTGTACTAGCTGCGGCTCTGTGAAAACTGAGATACGAGACATTACTGAACTCGTTGTAAGTCAAGTGAAAAACCTGAACAAGAATATACATTTAAATTTAGTTTCTTATTTGGTTATATTTGTTGTCTACTGTAATTTTTAAATAGAGGTTACAACATCGTGAAATTTTAACAAATCACTATTGTTCCGTGAAAAGTTATTTCGTACAAAATGTTACACAATAGGAACCTAACCGATAAATTATTTTAAATATAATGATAGGTGGAAAGACAAAAATGGCAGAAAGAGGAGAAACAATACAGTGAAGATAACGATGAAGAAAAATCAGAGGCAAAAGTTGATGAAGATGATAACAATGATATGTTCTCAACTCATGCTACTGATCCGGATGAACCAATATCGGCAGAAAAAGACAATGTTTGGGAATTGATTCCAGAACTCAAAGAAAAGATGCATGCGCACCAGCAAAAAGCTTTTGAGTTTCTTTGGAAAAACATTGCTGGCTCCATGGAACCATCCCTCATGCAAGAAAGATCCGAAACAAGTGGTGGATGTGTCATATCACATGCCCCTGGAGCTGGAAAAACCTTTCTCGTCATTTCTTTTCTCGTAAGTTACTTGAAGTTATTTCCAGGGAAAAGACCATTAGTCCTTGCACCAAAATCCACACTCTACACATGGTGCAAAGAGTTCAAAAAATGGAAGGTTCCCGTGCCTGTGTATCTTATCCATGGCCGTCGAACACAGAGAGATTCAACGGCTCCAAAACCTACGGTTCTTCCTGGAGTTCCAAGACCTTCTGATGATGTAAAACATGTTTTGGATTGTCTTGGAAAAATAAAAAAGTGGCATTCACACCCAAGTGTTCTTGTCATGGGCTATACTTCATTTTTAGCCTTAATGAGACAAGATACAGAATTTGCACACAGAAAGTACATGGCCAAAACTTTGAGAGAAAGCCCTGGAATCTTGATACTGGATGAAGGTCACAATCCGAGAAGCACAAAATCAAGGTTGAGGAAATGCTTAATGGAACTTCCTACAGAATTGAGGATTTTACTTTCTGGCACTTTGTTTCAGAACAATTTCGGTGAATATTTTAACACATTGTGTTTAGCAAGACCAAAATTTGTTCACGAAGTGCTACGAGAGTTAGATTCTAAATACTTGAGGAGAGGTAACAGAGAGAAGAAAGCGCAACATTTGCTTGAGGCGCGGGCGAGGAAATTCTTCTTGAACAACATTGCTACGAAAATCAACTCAGATAACGATGAGGAAAAAATGCAGGGTCTACATGTGCTGCGAAAGATCACGAGCAGTTTCATCGACGTTTATGAAAGTGGAAATTCCTCTGATACACTTCCTGGTTTACAAATATATACACTGTTCATGAATACGTCCGATGAACAGCTTGAGATTATACAGAAACTGCAGAAGAAAATGGCTGAGTGTACCACCAGTTACCCTCTCGAGGTAGAGCTTTTGATAACCCTTGGATCGATACATCCATGGTTGATCAAAACAGCAACACCATGTGCAGATAAGTTTTTTGCCGAAGATGAATTGAAGAGGCTAGACGGAATCAAATTTGATTTAAGAAAAGGTTCCAAAATAAGATTTGTTCTAAGCCTAATCTCACGTGTAGTGAAAAATGAAAAGGTTCTTATCTTTTGTCACTACCTTGCACCTGTGAGATTTTTCATAGAGTTATTTGAGAAATACTTTCAATGGCAAAATGGAAAAGAGGTTCTGCTACTTACTGGTGATCTAGATTTGTTTGAAAGAGGAAAAGTGATTGATAAGTTTGAAGATCCTCGCAGCGGTTCAAAGATACTTCTAGCTTCAATCAATGCTTGTGCTGAAGGTATTAGCTTAACAGCAGCTTCTAGAGTGATTTTTTTGGATTCTGAATGGAATCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTTCGTCCTGGTCAGCAAAAAATGGTTTATGTGTATCAGTTATTGACGACCGGGTCGATGGAGGAAGATAAGTATCGAAGAACTACTTGGAAAGAGTGGGTTTCTTGCATGATTTTTAGTGAGGAGTTTGTGGAAGATCCTTCTAAATGGCAAGCAGAAAAGATTGAAGATGAAATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCATATGATTATGAAGAATGAAAAGGATTCTGTAACGAATATGCCTCGTCATACAGAAGGACAGCAAGGCCTTCTAGAAGGATCAGATTTGGTTATGCAAGAGCCACAATCTGTTAGGCACTAG

Protein sequence

>MS.gene001893.t1

MDTQQMQTPLSSDIRIRSRKATSFDCSNFLRRGIDISMLQMSNRVGPIPTSIDARINSIQRQPHEADQCSCQFYVNFYEDQGSLGRNIKTLNKEVYATGIDRIFILQRLQNNSCEGLIKNSDSSEVVKPYRWDSSEDCSSLSESRLILGRFLSDLSWFVTTSFLKKVSFSIRSVQNKIMYHVVENDTDIIDPSFINVVNFKSEKGSIVPVVSLFDMFCDYDREEDEAPPMPSNLIEGLRRSKRRNVQPKRYIGSSVEKLEVGTFRTRPYKIEDGKSGEKVGDAAGEIPSKYLSKKNGAAAGVTISRDVEVDDNVTLGHYYSFCKEKPARRRIHGSDDMDFETKWEGIRFKKGAQTKRYHSICLTNRSHVQEGGRTLIGGRKWEIIDTYMKNLDSLPVEEEPTINDEETNKLEHKEEEKVSKSDDEEENPDDLSAIWEEMDTAMAASCLLDGTEGSNAEVLEDTEEICEHKYTFNEEIGIFCTSCGSVKTEIRDITELVVERQKWQKEEKQYSEDNDEEKSEAKVDEDDNNDMFSTHATDPDEPISAEKDNVWELIPELKEKMHAHQQKAFEFLWKNIAGSMEPSLMQERSETSGGCVISHAPGAGKTFLVISFLVSYLKLFPGKRPLVLAPKSTLYTWCKEFKKWKVPVPVYLIHGRRTQRDSTAPKPTVLPGVPRPSDDVKHVLDCLGKIKKWHSHPSVLVMGYTSFLALMRQDTEFAHRKYMAKTLRESPGILILDEGHNPRSTKSRLRKCLMELPTELRILLSGTLFQNNFGEYFNTLCLARPKFVHEVLRELDSKYLRRGNREKKAQHLLEARARKFFLNNIATKINSDNDEEKMQGLHVLRKITSSFIDVYESGNSSDTLPGLQIYTLFMNTSDEQLEIIQKLQKKMAECTTSYPLEVELLITLGSIHPWLIKTATPCADKFFAEDELKRLDGIKFDLRKGSKIRFVLSLISRVVKNEKVLIFCHYLAPVRFFIELFEKYFQWQNGKEVLLLTGDLDLFERGKVIDKFEDPRSGSKILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKYRRTTWKEWVSCMIFSEEFVEDPSKWQAEKIEDEILREMVEEDKSKAIHMIMKNEKDSVTNMPRHTEGQQGLLEGSDLVMQEPQSVRH