AlfalfaGEDB | MS.gene001907

M. sativa cultivar XinJiangDaYe / MS.gene001907

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001907.t1	XP_003622095.1	96.6	676	21	1	1	676	1	674	0.00E+00	1186.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001907.t1	G7L166	96.6	676	21	1	1	676	1	674	0.0e+00	1186.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001907.t1	V7CXS5	76.4	695	113	12	1	676	1	663	4.5e-268	933.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene001907.t1	TF	GRAS

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001907.t1	MTR_7g027190	98.373	676	9	1	1	676	1	674	0.0	1381
MS.gene001907.t1	MTR_4g104020	41.604	399	211	6	290	676	133	521	2.20e-96	307
MS.gene001907.t1	MTR_3g065980	35.810	525	269	13	186	676	51	541	1.17e-92	298
MS.gene001907.t1	MTR_7g074650	41.910	377	186	6	306	675	442	792	2.32e-92	304
MS.gene001907.t1	MTR_8g442410	40.863	394	206	6	294	675	147	525	2.54e-88	286
MS.gene001907.t1	MTR_5g097480	40.204	393	205	5	295	675	170	544	5.91e-88	285
MS.gene001907.t1	MTR_4g102790	38.303	389	217	7	296	674	286	661	7.10e-82	273
MS.gene001907.t1	MTR_1g029420	39.589	389	201	6	301	675	224	592	9.82e-81	268
MS.gene001907.t1	MTR_2g082090	36.490	433	239	5	260	674	164	578	7.22e-79	262
MS.gene001907.t1	MTR_3g056110	32.734	556	296	10	164	675	21	542	5.33e-78	259

Showing 1 to 10 of 63 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001907.t1	AT1G66350	44.103	390	184	11	293	676	146	507	1.31e-97	310
MS.gene001907.t1	AT3G03450	42.092	392	198	8	293	675	174	545	3.98e-95	304
MS.gene001907.t1	AT3G54220	41.709	398	196	6	287	674	278	649	1.09e-92	301
MS.gene001907.t1	AT1G14920	40.712	393	197	9	293	675	163	529	3.89e-90	291
MS.gene001907.t1	AT5G17490	42.967	391	190	10	293	675	151	516	2.23e-89	288
MS.gene001907.t1	AT2G01570	40.458	393	198	10	293	675	215	581	3.45e-87	285
MS.gene001907.t1	AT5G41920	40.759	395	202	9	289	675	30	400	1.96e-86	277
MS.gene001907.t1	AT2G04890	39.949	393	209	5	289	675	42	413	6.84e-84	271
MS.gene001907.t1	AT5G48150	39.481	385	204	5	303	675	123	490	5.82e-83	271
MS.gene001907.t1	AT5G48150	39.481	385	204	5	303	675	123	490	5.82e-83	271

Showing 1 to 10 of 48 entries

Previous1 2 3 4 5Next

Find 162 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGATGAATTCACTTTG+TGG	0.443783	7.3:+72994765	None:intergenic
AAATGGAGGAAGATAATGGA+AGG	0.614581	7.3:+72997076	MS.gene001907:CDS
AACACGGTGGAGACGGTTAA+CGG	0.479130	7.3:-72996771	None:intergenic
AACCGTCTCCACCGTGTTCC+TGG	0.336032	7.3:+72996776	MS.gene001907:CDS
AACTCCAATATCAACAATTT+TGG	0.134391	7.3:+72995373	MS.gene001907:CDS
AAGGTTGTTTGTTGCTTGGG+TGG	0.550029	7.3:+72997200	MS.gene001907:CDS
AATAGAGTAGTAACACCACT+AGG	0.648126	7.3:+72996209	MS.gene001907:CDS
AATAGTAATAATCAACAAAA+AGG	0.242712	7.3:+72995182	MS.gene001907:CDS
AATCACCAGATAGTTCAATG+TGG	0.716750	7.3:+72994967	MS.gene001907:CDS
AATGCAAAGCCTCGAGAAAT+CGG	0.401833	7.3:-72996901	None:intergenic

Showing 1 to 10 of 162 entries

Previous1 2 3 4 5…17Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTTGAGAGATGGTAAGTTT+AGG	-	chr7.3:72994920-72994939	None:intergenic	30.0%
CAAAATTCTTCAAGCTATTG+TGG	+	chr7.3:72995410-72995429	MS.gene001907:CDS	30.0%
GAGTGATATGTATCATCAAA+TGG	+	chr7.3:72995496-72995515	MS.gene001907:CDS	30.0%
GGACGTTGTATTTATGATAT+TGG	+	chr7.3:72995894-72995913	MS.gene001907:intron	30.0%
GTTAATTTATTCAGTTAGGG+AGG	-	chr7.3:72995715-72995734	None:intergenic	30.0%
TAATTTATTCAGTTAGGGAG+GGG	-	chr7.3:72995713-72995732	None:intergenic	30.0%
TATAGGTTAACTGAGGATAA+AGG	+	chr7.3:72997181-72997200	MS.gene001907:CDS	30.0%
TCTAAGTCAAATTTGAGAGA+TGG	-	chr7.3:72994930-72994949	None:intergenic	30.0%
TGTAACTATAACTATGCTCA+AGG	+	chr7.3:72995095-72995114	MS.gene001907:CDS	30.0%
TGTATTCATGTGATGGTTAT+AGG	+	chr7.3:72997164-72997183	MS.gene001907:CDS	30.0%

Showing 1 to 10 of 209 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	72994768	72997264	72994768	ID=MS.gene001907
chr7.3	mRNA	72994768	72997264	72994768	ID=MS.gene001907.t1;Parent=MS.gene001907
chr7.3	exon	72994768	72995640	72994768	ID=MS.gene001907.t1.exon1;Parent=MS.gene001907.t1
chr7.3	CDS	72994768	72995640	72994768	ID=cds.MS.gene001907.t1;Parent=MS.gene001907.t1
chr7.3	exon	72996107	72997264	72996107	ID=MS.gene001907.t1.exon2;Parent=MS.gene001907.t1
chr7.3	CDS	72996107	72997264	72996107	ID=cds.MS.gene001907.t1;Parent=MS.gene001907.t1

Gene Sequence

>MS.gene001907

ATGATGAATTCACTTTGTGGAAGCTCAAATTCTCTCAAAGAAAAATGTCTTCAACCCAATTCTTCAAATCAAACAAATACTCACTCAAAGAAAAATGCCACAAATTCTTGTAGTGATTTAGAGCAAATTAATGTTCTAACTCCACAAAGCCTAAACTTACCATCTCTCAAATTTGACTTAGATGGTGATGTGGAAGTCCAATCACCAGATAGTTCAATGTGGGAAGCATTTTTCAATGACCATTTAGATAATGATTTCATGATATCATCACCCATTAGAAACATTAACCCTAACCCTAATTCACCACAAGCTTCTACTTACAATAATTGTAACTATAACTATGCTCAAGGCATGCAAATTCAAAGCCTATCAGGTTGTTCACCACCTCGTTTTGCATCACAAATTGGTTCATTAAATAGTAATAATCAACAAAAAGGGAAAGGACTTAGTCCACTTCATAGAGTATTTAATTCACCAAATAATCAATATATGCAACATGTTGAAAATCTTTCATTGCCAGCAATTGAAGAGTTCTTAGAAGATTTTCAAGGTGATGTTGATCACTTTTCATCAACAAAGGTTTCTTCTGAATGTTTTGACATGGAAACTCCAATATCAACAATTTTGGATAGTTTAACAATGCAAAATTCTTCAAGCTATTGTGGTTCAGTTAATGAAGAATCTACTATTTTGCATGGTGGTAATTCTTCTTCTCAACTTTCTCAAGAGAGTGATATGTATCATCAAATGGGATCTATGGCTAGTGCTTCTCTTTCACAAGCTTTACAGCAAGAAAGGTACCAAGAGAAACATCAAAAGATGCAAGCTCAACAACAGAGTCTAACAGTTCCTATTCCAATTGGAATTGAGCAGGTAATAAAATCTTTCCTTTGTCTTTCTTCACCTAAAATCTTAATTAATTCAATTTTGAAGTTTTTTTATCCCCTCCCTAACTGAATAAATTAACATAATCAATAGTCAATCTACCATTTATTATCAATTTTTCTAATTCAACTTGGCTGTCTAAAGTCATGATTGGTGTGGCAATGCAAACTATATTATAAGATGCACATCCAAAAAGAGTTCATAGGATCATGCATAACAATGTTGTGTCCTCTATGTCTATGGACGTTGTATTTATGATATTGGTTATATGTCATCCAAAGAGGATTAGTGGCGCAGCTTATTGCCCGCTTGCCTTCCATTTCCGTATTAATTATTTAATACTTGATGTACATCTGAATGATCATGATCTAAACAAATATATTTGAAGCAATTTACAAGATTTAATTATTTTTATGATTTCTGAACTTAAAAGCTATATATCTAATATATGTAGGAGCAAGACAGTGGACTTCAACTAGTGCACTTGCTTCTAGCATGTGCTGAAGCAGTGGCAAAAGGGGAATACATGCTAGCAAGAAGGTACCTACACCAGCTCAATAGAGTAGTAACACCACTAGGTGACTCCATGCAAAGAGTAGCTTCATGTTTCACAGAATCTCTAAGTGCAAGACTGGCTGCAACCCTAACAACCAAGTCATCATCAACCAAAAAGTTAACACCATCATCGTTATCATCATCATCCTCTTCATCATGTTTATCTACCTTCCCATCAAACCCTATGGAAGTCCTCAAGATCTACCAAATTGTCTACCAAGCTTGCCCTTACATAAAATTTGCACACTTTACCGCTAACCAAGCCATTTTCGAGGCGTTTGAGGCAGAAGAACGTGTCCATGTCATCGACCTTGATATCCTTCAAGGCTACCAATGGCCTGCATTCATGCAGGCATTGGCTGCACGGCCCGGCGGTGCTCCGTTCCTTAGGATCACTGGAGTTGGGCCGTGCATCGAATCGGTTAGGGAAACCGGACGATGCTTAACAGAGTTAGCTCATTCTCTTCGTATCCCCTTCGAGTTCCACCCTGTTGGAGAACAACTTGAGGATCTAAAACCGCACATGTTTAACCGCCGTGTAGGCGAGGCTTTGGCGGTTAACACCGTTAACCGTCTCCACCGTGTTCCTGGCAATCATCTCGGGAACCTGTTATCCATGATAAGAGACCAAGCACCAAACATAGTGACACTTGTGGAGCAAGAAGCAAGCCATAATGGGCCGTACTTTTTGGGCCGATTTCTCGAGGCTTTGCATTACTACTCAGCAATTTTTGACTCCTTGGACGCTACTTTTCCTGTGGAGTCAGCACCAAGGGCTAAGGTGGAGCAGTATATATTTGCACCGGAGATTCGGAACATCGTGGCATGTGAAGGTGAGGAGAGGATAGAGAGACATGAGAGGTTGGAGAAATGGAGGAAGATAATGGAAGGAAAAGGGTTCAAAGGAGTGCCTCTAAGTCCTAATGCAGTGACTCAGTCGAGGATATTATTGGGTTTGTATTCATGTGATGGTTATAGGTTAACTGAGGATAAAGGTTGTTTGTTGCTTGGGTGGCAAGACAGAGCCATTATCGCTGCTTCTGCATGGCGATGCTGA

Protein sequence

>MS.gene001907.t1

MMNSLCGSSNSLKEKCLQPNSSNQTNTHSKKNATNSCSDLEQINVLTPQSLNLPSLKFDLDGDVEVQSPDSSMWEAFFNDHLDNDFMISSPIRNINPNPNSPQASTYNNCNYNYAQGMQIQSLSGCSPPRFASQIGSLNSNNQQKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDFQGDVDHFSSTKVSSECFDMETPISTILDSLTMQNSSSYCGSVNEESTILHGGNSSSQLSQESDMYHQMGSMASASLSQALQQERYQEKHQKMQAQQQSLTVPIPIGIEQEQDSGLQLVHLLLACAEAVAKGEYMLARRYLHQLNRVVTPLGDSMQRVASCFTESLSARLAATLTTKSSSTKKLTPSSLSSSSSSSCLSTFPSNPMEVLKIYQIVYQACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGPCIESVRETGRCLTELAHSLRIPFEFHPVGEQLEDLKPHMFNRRVGEALAVNTVNRLHRVPGNHLGNLLSMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPVESAPRAKVEQYIFAPEIRNIVACEGEERIERHERLEKWRKIMEGKGFKGVPLSPNAVTQSRILLGLYSCDGYRLTEDKGCLLLGWQDRAIIAASAWRC