AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001981

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001981.t1 MTR_6g047570 85.429 350 25 3 1 338 1 336 0.0 589
MS.gene001981.t1 MTR_0011s0260 66.209 364 91 5 1 337 1 359 5.21e-155 439
MS.gene001981.t1 MTR_0011s0210 65.753 365 93 5 1 338 1 360 1.06e-153 436
MS.gene001981.t1 MTR_6g047550 85.141 249 20 4 1 234 1 247 4.25e-142 403
MS.gene001981.t1 MTR_4g067010 62.393 351 85 10 1 336 1 319 4.42e-135 387
MS.gene001981.t1 MTR_4g066380 64.205 352 84 8 1 337 1 325 1.78e-134 386
MS.gene001981.t1 MTR_4g066460 60.870 368 75 7 1 338 1 329 5.88e-134 384
MS.gene001981.t1 MTR_0250s0040 75.403 248 54 3 95 338 21 265 1.29e-128 369
MS.gene001981.t1 MTR_0246s0020 57.990 388 104 7 1 338 1 379 5.82e-126 366
MS.gene001981.t1 MTR_4g098035 53.672 354 136 11 1 338 1 342 4.33e-110 324
MS.gene001981.t1 MTR_0246s0020 54.474 380 112 8 1 330 1 369 8.35e-109 322
MS.gene001981.t1 MTR_0246s0050 52.711 332 130 10 22 338 2 321 9.40e-101 300
MS.gene001981.t1 MTR_5g014560 42.500 320 129 9 25 337 36 307 8.21e-65 207
MS.gene001981.t1 MTR_5g014520 54.774 199 89 1 139 337 136 333 9.33e-63 203
MS.gene001981.t1 MTR_4g009540 40.756 238 127 4 111 334 94 331 5.06e-51 172
MS.gene001981.t1 MTR_5g014600 36.134 357 173 12 8 333 2 334 4.26e-49 167
MS.gene001981.t1 MTR_4g092700 44.811 212 114 3 126 336 124 333 1.36e-46 161
MS.gene001981.t1 MTR_2g010450 43.878 196 103 4 145 336 161 353 7.79e-46 159
MS.gene001981.t1 MTR_4g097920 44.444 171 91 2 159 328 138 305 1.21e-43 152
MS.gene001981.t1 MTR_4g009540 40.553 217 115 4 111 313 94 310 2.00e-43 152
MS.gene001981.t1 MTR_4g097920 44.444 171 91 2 159 328 153 320 2.19e-43 152
MS.gene001981.t1 MTR_2g104490 42.574 202 107 4 133 328 104 302 2.24e-43 152
MS.gene001981.t1 MTR_4g097950 46.429 196 90 4 151 335 60 251 6.61e-43 149
MS.gene001981.t1 MTR_4g009110 36.777 242 135 4 111 334 109 350 9.31e-43 151
MS.gene001981.t1 MTR_4g097940 45.029 171 90 3 159 328 153 320 2.53e-42 149
MS.gene001981.t1 MTR_2g104550 42.925 212 109 7 135 337 107 315 5.21e-41 145
MS.gene001981.t1 MTR_8g009020 37.553 237 123 6 116 329 84 318 7.85e-39 140
MS.gene001981.t1 MTR_5g014640 41.011 178 102 2 156 333 149 323 3.00e-37 136
MS.gene001981.t1 MTR_7g080780 39.594 197 109 3 138 334 143 329 2.83e-36 134
MS.gene001981.t1 MTR_7g080780 40.104 192 105 3 138 329 130 311 3.20e-36 133
MS.gene001981.t1 MTR_2g104490 41.711 187 100 4 133 313 104 287 3.59e-36 132
MS.gene001981.t1 MTR_2g104650 38.824 255 130 7 90 332 27 267 4.82e-36 132
MS.gene001981.t1 MTR_2g104560 37.154 253 118 11 92 335 6 226 7.29e-36 130
MS.gene001981.t1 MTR_2g104500 35.169 236 133 5 110 334 46 272 3.52e-31 119
MS.gene001981.t1 MTR_8g009010 35.065 231 96 5 117 329 73 267 4.21e-31 119
MS.gene001981.t1 MTR_2g104530 40.588 170 93 3 162 329 106 269 2.49e-30 117
MS.gene001981.t1 MTR_8g069740 39.205 176 102 4 141 312 91 265 4.17e-30 115
MS.gene001981.t1 MTR_2g104590 37.500 176 84 4 161 332 69 222 2.11e-29 113
MS.gene001981.t1 MTR_5g014550 51.163 129 49 4 191 312 54 175 6.97e-27 105
MS.gene001981.t1 MTR_4g009510 34.756 164 89 5 172 331 53 202 1.75e-24 99.4
MS.gene001981.t1 MTR_4g009420 34.839 155 69 2 184 331 65 194 3.50e-22 92.8
MS.gene001981.t1 MTR_7g451650 33.113 151 85 3 184 331 57 194 5.54e-22 92.4
MS.gene001981.t1 MTR_7g050350 33.557 149 75 4 190 331 1 132 5.52e-20 85.1
MS.gene001981.t1 MTR_7g451650 33.557 149 75 4 190 331 1 132 5.52e-20 85.1
MS.gene001981.t1 MTR_8g067280 34.270 178 93 6 140 297 436 609 6.39e-17 82.0
MS.gene001981.t1 MTR_1g072320 30.220 182 110 5 161 328 470 648 1.28e-16 81.3
MS.gene001981.t1 MTR_8g024790 29.448 163 96 5 147 298 277 431 2.95e-15 76.6
MS.gene001981.t1 MTR_5g030430 30.508 177 103 5 139 297 466 640 8.79e-15 75.9
MS.gene001981.t1 MTR_7g451650 30.827 133 76 3 184 313 57 176 5.31e-14 70.1
MS.gene001981.t1 MTR_8g064700 24.519 208 132 5 117 310 202 398 8.43e-14 72.4
MS.gene001981.t1 MTR_8g027495 51.562 64 31 0 161 224 458 521 9.34e-14 72.4
MS.gene001981.t1 MTR_4g009420 32.847 137 60 2 184 313 65 176 1.11e-13 69.3
MS.gene001981.t1 MTR_7g117670 32.331 133 82 3 161 293 402 526 2.65e-13 71.2
MS.gene001981.t1 MTR_3g498695 29.545 176 108 4 162 324 299 471 2.74e-13 70.9
MS.gene001981.t1 MTR_8g024770 32.192 146 83 5 137 270 251 392 4.22e-13 70.1
MS.gene001981.t1 MTR_8g098275 44.444 72 40 0 153 224 300 371 5.33e-13 70.1
MS.gene001981.t1 MTR_8g098275 44.444 72 40 0 153 224 236 307 5.68e-13 69.7
MS.gene001981.t1 MTR_8g098275 44.444 72 40 0 153 224 393 464 5.74e-13 70.1
MS.gene001981.t1 MTR_3g030700 30.323 155 103 2 163 312 198 352 1.25e-12 68.6
MS.gene001981.t1 MTR_3g498695 29.545 176 107 5 162 324 299 470 1.85e-12 68.2
MS.gene001981.t1 MTR_7g096350 38.835 103 54 3 117 214 310 408 2.64e-12 67.8
MS.gene001981.t1 MTR_1g112680 29.255 188 102 7 140 297 295 481 2.47e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001981.t1 AT4G37850 41.772 237 114 6 105 336 111 328 3.66e-45 157
MS.gene001981.t1 AT4G37850 41.772 237 114 6 105 336 111 328 3.66e-45 157
MS.gene001981.t1 AT2G22760 43.655 197 94 6 151 333 102 295 5.14e-42 148
MS.gene001981.t1 AT2G22750 44.388 196 101 3 146 335 111 304 5.10e-38 137
MS.gene001981.t1 AT2G22750 44.388 196 101 3 146 335 139 332 5.13e-38 138
MS.gene001981.t1 AT2G22750 44.388 196 101 3 146 335 135 328 5.80e-38 138
MS.gene001981.t1 AT2G22750 44.388 196 100 4 146 335 111 303 8.61e-37 134
MS.gene001981.t1 AT2G22750 44.388 196 100 4 146 335 139 331 9.94e-37 135
MS.gene001981.t1 AT2G22770 35.565 239 129 5 110 331 87 317 1.11e-35 132
MS.gene001981.t1 AT2G22760 43.182 176 84 5 151 313 102 274 2.43e-35 130
MS.gene001981.t1 AT4G17880 32.704 159 96 3 161 314 416 568 1.09e-17 84.3
MS.gene001981.t1 AT5G46760 30.220 182 98 8 161 317 415 592 5.99e-17 82.0
MS.gene001981.t1 AT1G32640 30.857 175 111 5 147 314 434 605 2.72e-16 80.1
MS.gene001981.t1 AT1G63650 32.143 140 77 3 161 282 405 544 1.78e-15 77.8
MS.gene001981.t1 AT1G63650 32.143 140 77 3 161 282 405 544 1.78e-15 77.8
MS.gene001981.t1 AT1G63650 32.143 140 77 3 161 282 405 544 1.78e-15 77.8
MS.gene001981.t1 AT1G01260 35.593 118 69 2 140 255 412 524 3.39e-14 73.9
MS.gene001981.t1 AT1G01260 35.593 118 69 2 140 255 412 524 3.39e-14 73.9
MS.gene001981.t1 AT1G01260 35.593 118 69 2 140 255 412 524 3.39e-14 73.9
MS.gene001981.t1 AT2G46510 50.000 60 30 0 161 220 395 454 4.03e-13 70.5
MS.gene001981.t1 AT4G09820 32.231 121 62 1 162 282 364 464 2.15e-12 68.2
MS.gene001981.t1 AT5G41315 29.586 169 83 6 151 290 437 598 3.27e-12 67.8
MS.gene001981.t1 AT5G41315 29.560 159 77 5 161 290 441 593 3.63e-12 67.8
MS.gene001981.t1 AT4G16430 47.541 61 32 0 161 221 320 380 3.85e-12 67.4
MS.gene001981.t1 AT5G41315 29.560 159 77 5 161 290 449 601 3.89e-12 67.8
MS.gene001981.t1 AT2G16910 30.323 155 86 5 162 294 315 469 1.35e-11 65.9
MS.gene001981.t1 AT1G12860 30.682 176 105 5 162 326 268 437 2.44e-11 65.1
MS.gene001981.t1 AT3G26744 30.994 171 96 5 162 316 308 472 2.58e-11 65.1
MS.gene001981.t1 AT3G26744 30.994 171 96 5 162 316 308 472 2.58e-11 65.1
MS.gene001981.t1 AT3G26744 30.994 171 96 5 162 316 308 472 2.58e-11 65.1
MS.gene001981.t1 AT1G12860 31.847 157 91 4 162 307 268 419 4.57e-11 63.9

Find 58 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTAGTAGTGGGTGAATT+TGG 0.150027 6.2:-40772645 None:intergenic
ATCAAGTTATGAAACAAATT+TGG 0.168145 6.2:+40772473 MS.gene001981:CDS
TCAGTTTCAAATTCCATCTT+TGG 0.246525 6.2:+40772614 MS.gene001981:CDS
ATTGTTGTCTGCTTTGTTCT+TGG 0.252121 6.2:-40772410 None:intergenic
AATTAGTAGTGGGTGAATTT+GGG 0.256712 6.2:-40772644 None:intergenic
TCTTGTTCCTAACCTTAAAA+AGG 0.274757 6.2:+40772794 MS.gene001981:CDS
CAACAGCTGGTTATCTGATT+TGG 0.283101 6.2:+40771773 MS.gene001981:CDS
CTGCAAGGGCAATGAAGTTC+TGG 0.283821 6.2:-40772770 None:intergenic
CAAGTGGAAGCAAGAATCTT+AGG 0.299386 6.2:+40773139 MS.gene001981:CDS
CATCTGTATCAAGGAAATTC+AGG 0.330296 6.2:-40772350 None:intergenic
GGGGCTTCTAGTTAAAATTA+TGG 0.343764 6.2:+40773201 MS.gene001981:CDS
CTAGAAGCCCCTTGTGCTCT+TGG 0.347775 6.2:-40773189 None:intergenic
AATTATAGTGTCTTACCCTT+TGG 0.352306 6.2:+40773256 MS.gene001981:CDS
TGATGAGTTACTAAGAGATA+TGG 0.356279 6.2:-40772454 None:intergenic
GCCCCTTGTGCTCTTGGCAT+TGG 0.357940 6.2:-40773183 None:intergenic
TCATGGTCAAGATCATATTA+TGG 0.361536 6.2:+40772719 MS.gene001981:CDS
ATTCTTGCTTCCACTTGAAA+TGG 0.371460 6.2:-40773133 None:intergenic
TACTAATTCCTCACAAAACT+TGG 0.378617 6.2:+40772659 MS.gene001981:CDS
GATGGTGATGAAGAAAGTTT+TGG 0.400368 6.2:-40772579 None:intergenic
ATCGTTGCAGAGGCCTGGTT+TGG 0.412083 6.2:-40773062 None:intergenic
AGACAACAATGTTTCACTTC+GGG 0.426051 6.2:+40772423 MS.gene001981:CDS
TAGGAAAATATATGTTGATT+CGG 0.438258 6.2:+40773158 MS.gene001981:CDS
TTATCATCGTTGCAGAGGCC+TGG 0.468161 6.2:-40773067 None:intergenic
TGCAAGGGCAATGAAGTTCT+GGG 0.488055 6.2:-40772769 None:intergenic
TTTGGGGTGTTGTCCAAAGA+TGG 0.491872 6.2:-40772627 None:intergenic
AGTTTATACCTGAGCAATGA+TGG 0.494182 6.2:-40773299 None:intergenic
GATGAGTTACTAAGAGATAT+GGG 0.494432 6.2:-40772453 None:intergenic
CCGATAGTCTTGACCAAACC+AGG 0.516025 6.2:+40773049 MS.gene001981:CDS
GTTAGGAACAAGAGCTGCAA+GGG 0.522046 6.2:-40772784 None:intergenic
GAAATTCAGGTTGCTTTCCT+CGG 0.522717 6.2:-40772337 None:intergenic
AAAAGGTCTCGTACTCATCA+TGG 0.528225 6.2:+40772702 MS.gene001981:CDS
AGACATTACCATCATTGCTC+AGG 0.528978 6.2:+40773291 MS.gene001981:CDS
CAGACAACAATGTTTCACTT+CGG 0.536877 6.2:+40772422 MS.gene001981:CDS
ACTCTACCACATCTGTATCA+AGG 0.544071 6.2:-40772359 None:intergenic
AAATTATGGTCGAGATTCAA+AGG 0.544393 6.2:+40773215 MS.gene001981:CDS
GAGCAATGATGGTAATGTCT+AGG 0.547782 6.2:-40773288 None:intergenic
AGGTTACAACATGAGCATAA+AGG 0.548654 6.2:+40773594 MS.gene001981:CDS
CGAATACAATTTATTTGCCG+AGG 0.552030 6.2:+40772320 MS.gene001981:CDS
CCTGGTTTGGTCAAGACTAT+CGG 0.562604 6.2:-40773049 None:intergenic
AACTGAAAAGATGAGTTAGA+TGG 0.564159 6.2:-40772597 None:intergenic
CAAATCAGATAACCAGCTGT+TGG 0.564229 6.2:-40771772 None:intergenic
GATCCAATGCCAAGAGCACA+AGG 0.574564 6.2:+40773180 MS.gene001981:CDS
TCCAATGCCAAGAGCACAAG+GGG 0.581671 6.2:+40773182 MS.gene001981:CDS
ATTAGTAGTGGGTGAATTTG+GGG 0.592448 6.2:-40772643 None:intergenic
GAGTTTCTCTCACATGACAT+AGG 0.592458 6.2:+40772378 MS.gene001981:CDS
ACTTCAATGCTGCCATGCGT+AGG 0.601033 6.2:-40773630 None:intergenic
GTCTAGGATAGAATTTCCAA+AGG 0.606376 6.2:-40773272 None:intergenic
ACGTATCATCAACCAACAGC+TGG 0.606784 6.2:+40771760 MS.gene001981:CDS
TCTAGGATAGAATTTCCAAA+GGG 0.607454 6.2:-40773271 None:intergenic
GACAACAATGTTTCACTTCG+GGG 0.612135 6.2:+40772424 MS.gene001981:CDS
GGTTAGGAACAAGAGCTGCA+AGG 0.614039 6.2:-40772785 None:intergenic
TGTTGATTTACCATTTCAAG+TGG 0.623690 6.2:+40773123 MS.gene001981:CDS
GAATTTCCTTGATACAGATG+TGG 0.638336 6.2:+40772353 MS.gene001981:CDS
AGGAGTTATCATCGTTGCAG+AGG 0.639176 6.2:-40773072 None:intergenic
GTTACTAAGAGATATGGGAG+TGG 0.669803 6.2:-40772448 None:intergenic
ATCCAATGCCAAGAGCACAA+GGG 0.680253 6.2:+40773181 MS.gene001981:CDS
ACTTGTGAAGAACCTACGCA+TGG 0.684270 6.2:+40773618 MS.gene001981:CDS
AATGCTCTCATGAGATGACG+AGG 0.706550 6.2:-40773092 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAAATAAAAATAAGA+AGG - chr6.2:40771824-40771843 None:intergenic 10.0%
!! AAAGAAAAATAAAAATAAGA+AGG - chr6.2:40771876-40771895 None:intergenic 10.0%
!! AACAAAAATAAAAATAAGAA+GGG - chr6.2:40771823-40771842 None:intergenic 10.0%
!! AAGAAAAATAAAAATAAGAA+GGG - chr6.2:40771875-40771894 None:intergenic 10.0%
!! TTTATAATAAAAAACATTTG+TGG - chr6.2:40772088-40772107 None:intergenic 10.0%
!!! AATCTTAATTATTTTATAGT+TGG + chr6.2:40773567-40773586 MS.gene001981:intron 10.0%
!!! ATCTTAATTATTTTATAGTT+GGG + chr6.2:40773568-40773587 MS.gene001981:intron 10.0%
!!! TCTTATTTTTATTTTTCTTT+TGG + chr6.2:40771876-40771895 MS.gene001981:intron 10.0%
!!! TCTTATTTTTATTTTTGTTT+TGG + chr6.2:40771824-40771843 MS.gene001981:intron 10.0%
!!! TATAAGAAGTATTTTATTCT+AGG + chr6.2:40773450-40773469 MS.gene001981:intron 15.0%
!!! TCTCACAATTTTTATATTTT+TGG + chr6.2:40773363-40773382 MS.gene001981:intron 15.0%
!!! TTCTTTTTATGAAATAATCT+TGG + chr6.2:40772867-40772886 MS.gene001981:intron 15.0%
!! ATCAAGTTATGAAACAAATT+TGG + chr6.2:40772473-40772492 MS.gene001981:CDS 20.0%
!! GAATATAATAGTAATAGTGA+TGG - chr6.2:40773391-40773410 None:intergenic 20.0%
!!! ATTTTGTTGTCTTTTGATTT+TGG + chr6.2:40773504-40773523 MS.gene001981:intron 20.0%
!!! TAGGAAAATATATGTTGATT+CGG + chr6.2:40773158-40773177 MS.gene001981:CDS 20.0%
!!! TGATTTTGATAAGTCAAATA+TGG + chr6.2:40772509-40772528 MS.gene001981:CDS 20.0%
!!! TTAGTTATTGTACCTTTTTA+AGG - chr6.2:40772809-40772828 None:intergenic 20.0%
! AAATAAAAATAAGAAGGGTG+TGG - chr6.2:40771818-40771837 None:intergenic 25.0%
! AAATGTTAGTGGCAATTTAA+AGG - chr6.2:40773338-40773357 None:intergenic 25.0%
! ATTATATCGAGCAATTATAG+TGG - chr6.2:40773483-40773502 None:intergenic 25.0%
!! AATAAAAATAAGAAGGGTGT+GGG - chr6.2:40771869-40771888 None:intergenic 25.0%
!!! ATTATTTTATAGTTGGGTGA+AGG + chr6.2:40773574-40773593 MS.gene001981:intron 25.0%
!!! TATTGTACCTTTTTAAGGTT+AGG - chr6.2:40772804-40772823 None:intergenic 25.0%
AAATTATGGTCGAGATTCAA+AGG + chr6.2:40773215-40773234 MS.gene001981:CDS 30.0%
AACTGAAAAGATGAGTTAGA+TGG - chr6.2:40772600-40772619 None:intergenic 30.0%
AATTATAGTGTCTTACCCTT+TGG + chr6.2:40773256-40773275 MS.gene001981:CDS 30.0%
GATGAGTTACTAAGAGATAT+GGG - chr6.2:40772456-40772475 None:intergenic 30.0%
GTGAGAGAAAAAAATGTTAG+TGG - chr6.2:40773349-40773368 None:intergenic 30.0%
TACTAATTCCTCACAAAACT+TGG + chr6.2:40772659-40772678 MS.gene001981:CDS 30.0%
TCAGTTTCAAATTCCATCTT+TGG + chr6.2:40772614-40772633 MS.gene001981:CDS 30.0%
TCATGGTCAAGATCATATTA+TGG + chr6.2:40772719-40772738 MS.gene001981:CDS 30.0%
TCTTGTTCCTAACCTTAAAA+AGG + chr6.2:40772794-40772813 MS.gene001981:CDS 30.0%
TGATGAGTTACTAAGAGATA+TGG - chr6.2:40772457-40772476 None:intergenic 30.0%
! ATTTTGTATCACACTACTCA+CGG + chr6.2:40772897-40772916 MS.gene001981:intron 30.0%
! TCTAGGATAGAATTTCCAAA+GGG - chr6.2:40773274-40773293 None:intergenic 30.0%
! TTTTGTGAGGAATTAGTAGT+GGG - chr6.2:40772657-40772676 None:intergenic 30.0%
!! AATTAGTAGTGGGTGAATTT+GGG - chr6.2:40772647-40772666 None:intergenic 30.0%
!! TGAAGAAAGTTTTGGTGAAT+AGG - chr6.2:40772574-40772593 None:intergenic 30.0%
!! TGTTGATTTACCATTTCAAG+TGG + chr6.2:40773123-40773142 MS.gene001981:CDS 30.0%
!! TTTTGTTTCCAAGTTTTGTG+AGG - chr6.2:40772670-40772689 None:intergenic 30.0%
!!! TAAAAAGCGTCTGAAAGTTT+TGG + chr6.2:40772994-40773013 MS.gene001981:CDS 30.0%
AGACAACAATGTTTCACTTC+GGG + chr6.2:40772423-40772442 MS.gene001981:CDS 35.0%
AGGTTACAACATGAGCATAA+AGG + chr6.2:40773594-40773613 MS.gene001981:CDS 35.0%
AGTTTATACCTGAGCAATGA+TGG - chr6.2:40773302-40773321 None:intergenic 35.0%
ATTCTTGCTTCCACTTGAAA+TGG - chr6.2:40773136-40773155 None:intergenic 35.0%
CAAAAACCTCAAAGAGCAAA+AGG + chr6.2:40772685-40772704 MS.gene001981:CDS 35.0%
CAGACAACAATGTTTCACTT+CGG + chr6.2:40772422-40772441 MS.gene001981:CDS 35.0%
CATCTGTATCAAGGAAATTC+AGG - chr6.2:40772353-40772372 None:intergenic 35.0%
CCTGCAAAAACAAAACGAAA+AGG - chr6.2:40772293-40772312 None:intergenic 35.0%
CGAATACAATTTATTTGCCG+AGG + chr6.2:40772320-40772339 MS.gene001981:CDS 35.0%
CGATTGGGTAAATATCTGTT+AGG + chr6.2:40772922-40772941 MS.gene001981:intron 35.0%
CTAATGAAACGCTCTTGTTA+GGG - chr6.2:40772240-40772259 None:intergenic 35.0%
GAATTTCCTTGATACAGATG+TGG + chr6.2:40772353-40772372 MS.gene001981:CDS 35.0%
TTGGGTAAATATCTGTTAGG+TGG + chr6.2:40772925-40772944 MS.gene001981:intron 35.0%
! ATTGTTGTCTGCTTTGTTCT+TGG - chr6.2:40772413-40772432 None:intergenic 35.0%
! GGGGCTTCTAGTTAAAATTA+TGG + chr6.2:40773201-40773220 MS.gene001981:CDS 35.0%
! GTCTAGGATAGAATTTCCAA+AGG - chr6.2:40773275-40773294 None:intergenic 35.0%
! GTTTTGTGAGGAATTAGTAG+TGG - chr6.2:40772658-40772677 None:intergenic 35.0%
!! ATTAGTAGTGGGTGAATTTG+GGG - chr6.2:40772646-40772665 None:intergenic 35.0%
!! GAATTAGTAGTGGGTGAATT+TGG - chr6.2:40772648-40772667 None:intergenic 35.0%
!! GATGGTGATGAAGAAAGTTT+TGG - chr6.2:40772582-40772601 None:intergenic 35.0%
!!! CCTTTTCGTTTTGTTTTTGC+AGG + chr6.2:40772290-40772309 MS.gene001981:intron 35.0%
!!! CGTTTTGTTTTTGCAGGAAA+TGG + chr6.2:40772296-40772315 MS.gene001981:intron 35.0%
AAAAGGTCTCGTACTCATCA+TGG + chr6.2:40772702-40772721 MS.gene001981:CDS 40.0%
ACATGTCTCTACACATGAGT+CGG - chr6.2:40771944-40771963 None:intergenic 40.0%
ACTCTACCACATCTGTATCA+AGG - chr6.2:40772362-40772381 None:intergenic 40.0%
AGACATTACCATCATTGCTC+AGG + chr6.2:40773291-40773310 MS.gene001981:CDS 40.0%
AGGATGTACATGGGGAATAT+CGG - chr6.2:40772003-40772022 None:intergenic 40.0%
ATATTCCCCATGTACATCCT+TGG + chr6.2:40772003-40772022 MS.gene001981:intron 40.0%
ATGTGTAGAGACATGTCTAC+TGG + chr6.2:40771948-40771967 MS.gene001981:intron 40.0%
CAAATCAGATAACCAGCTGT+TGG - chr6.2:40771775-40771794 None:intergenic 40.0%
CAACAGCTGGTTATCTGATT+TGG + chr6.2:40771773-40771792 MS.gene001981:CDS 40.0%
CAAGTGGAAGCAAGAATCTT+AGG + chr6.2:40773139-40773158 MS.gene001981:CDS 40.0%
GACAACAATGTTTCACTTCG+GGG + chr6.2:40772424-40772443 MS.gene001981:CDS 40.0%
GAGTTTCTCTCACATGACAT+AGG + chr6.2:40772378-40772397 MS.gene001981:CDS 40.0%
GCTAATGAAACGCTCTTGTT+AGG - chr6.2:40772241-40772260 None:intergenic 40.0%
GTTACTAAGAGATATGGGAG+TGG - chr6.2:40772451-40772470 None:intergenic 40.0%
! AAAATAAGAAGGGTGTGGGT+CGG - chr6.2:40771865-40771884 None:intergenic 40.0%
! GAGCAATGATGGTAATGTCT+AGG - chr6.2:40773291-40773310 None:intergenic 40.0%
!! GAAATTCAGGTTGCTTTCCT+CGG - chr6.2:40772340-40772359 None:intergenic 40.0%
!!! TTTTCTTTTGGCTTTCGCAC+CGG + chr6.2:40771888-40771907 MS.gene001981:intron 40.0%
!!! TTTTGTTTTGGCTTTCGCAC+CGG + chr6.2:40771836-40771855 MS.gene001981:intron 40.0%
AATATCGGGTTCGATTCCCA+AGG - chr6.2:40771988-40772007 None:intergenic 45.0%
AATGCTCTCATGAGATGACG+AGG - chr6.2:40773095-40773114 None:intergenic 45.0%
ACACTACTCACGGATCGATT+GGG + chr6.2:40772907-40772926 MS.gene001981:intron 45.0%
ACGTATCATCAACCAACAGC+TGG + chr6.2:40771760-40771779 MS.gene001981:CDS 45.0%
ACTTGTGAAGAACCTACGCA+TGG + chr6.2:40773618-40773637 MS.gene001981:CDS 45.0%
AGGAGTTATCATCGTTGCAG+AGG - chr6.2:40773075-40773094 None:intergenic 45.0%
ATATCGGGTTCGATTCCCAA+GGG - chr6.2:40771987-40772006 None:intergenic 45.0%
ATTAGTCGCCCACCTTTAGT+GGG - chr6.2:40771921-40771940 None:intergenic 45.0%
CTCCTTCCAAGGATGTACAT+GGG - chr6.2:40772012-40772031 None:intergenic 45.0%
GGATGTACATGGGGAATATC+GGG - chr6.2:40772002-40772021 None:intergenic 45.0%
GTTAGGAACAAGAGCTGCAA+GGG - chr6.2:40772787-40772806 None:intergenic 45.0%
TCCTTCCAAGGATGTACATG+GGG - chr6.2:40772011-40772030 None:intergenic 45.0%
TGCAAGGGCAATGAAGTTCT+GGG - chr6.2:40772772-40772791 None:intergenic 45.0%
! ACGAGACCTTTTGCTCTTTG+AGG - chr6.2:40772694-40772713 None:intergenic 45.0%
! ATCCAATGCCAAGAGCACAA+GGG + chr6.2:40773181-40773200 MS.gene001981:CDS 45.0%
!! CCTGGTTTGGTCAAGACTAT+CGG - chr6.2:40773052-40773071 None:intergenic 45.0%
!! TTTGGGGTGTTGTCCAAAGA+TGG - chr6.2:40772630-40772649 None:intergenic 45.0%
ACTTCAATGCTGCCATGCGT+AGG - chr6.2:40773633-40773652 None:intergenic 50.0%
CACACTACTCACGGATCGAT+TGG + chr6.2:40772906-40772925 MS.gene001981:intron 50.0%
CTGCAAGGGCAATGAAGTTC+TGG - chr6.2:40772773-40772792 None:intergenic 50.0%
GCTCCTTCCAAGGATGTACA+TGG - chr6.2:40772013-40772032 None:intergenic 50.0%
GGTTAGGAACAAGAGCTGCA+AGG - chr6.2:40772788-40772807 None:intergenic 50.0%
GTTTCCGACCCACTAAAGGT+GGG + chr6.2:40771910-40771929 MS.gene001981:intron 50.0%
TATCGGGTTCGATTCCCAAG+GGG - chr6.2:40771986-40772005 None:intergenic 50.0%
TCCCCATGTACATCCTTGGA+AGG + chr6.2:40772007-40772026 MS.gene001981:intron 50.0%
TTATCATCGTTGCAGAGGCC+TGG - chr6.2:40773070-40773089 None:intergenic 50.0%
! ACCTTTAGTGGGTCGGAAAC+CGG - chr6.2:40771910-40771929 None:intergenic 50.0%
! CCGATAGTCTTGACCAAACC+AGG + chr6.2:40773049-40773068 MS.gene001981:CDS 50.0%
! GATCCAATGCCAAGAGCACA+AGG + chr6.2:40773180-40773199 MS.gene001981:CDS 50.0%
! GATTAGTCGCCCACCTTTAG+TGG - chr6.2:40771922-40771941 None:intergenic 50.0%
! TCCAATGCCAAGAGCACAAG+GGG + chr6.2:40773182-40773201 MS.gene001981:CDS 50.0%
ATCGTTGCAGAGGCCTGGTT+TGG - chr6.2:40773065-40773084 None:intergenic 55.0%
CCAAGTTGCTTGCGCTTCAG+TGG - chr6.2:40772042-40772061 None:intergenic 55.0%
CCACTGAAGCGCAAGCAACT+TGG + chr6.2:40772039-40772058 MS.gene001981:intron 55.0%
CTAGAAGCCCCTTGTGCTCT+TGG - chr6.2:40773192-40773211 None:intergenic 55.0%
GGTTTCCGACCCACTAAAGG+TGG + chr6.2:40771909-40771928 MS.gene001981:intron 55.0%
TTCCCAAGGGGAACAACGCT+TGG - chr6.2:40771974-40771993 None:intergenic 55.0%
TTGCTTGCGCTTCAGTGGCA+AGG - chr6.2:40772037-40772056 None:intergenic 55.0%
! ACCGGTTTCCGACCCACTAA+AGG + chr6.2:40771906-40771925 MS.gene001981:intron 55.0%
GCCCCTTGTGCTCTTGGCAT+TGG - chr6.2:40773186-40773205 None:intergenic 60.0%
GTGGCAAGGAGCTCCTTCCA+AGG - chr6.2:40772023-40772042 None:intergenic 60.0%
! GAAGGGTGTGGGTCGGAAAC+CGG - chr6.2:40771858-40771877 None:intergenic 60.0%
! GGCCAAGCGTTGTTCCCCTT+GGG + chr6.2:40771969-40771988 MS.gene001981:intron 60.0%
! GTCGCCCACCTTTAGTGGGT+CGG - chr6.2:40771917-40771936 None:intergenic 60.0%
! TGGCCAAGCGTTGTTCCCCT+TGG + chr6.2:40771968-40771987 MS.gene001981:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 40771732 40773666 40771732 ID=MS.gene001981
chr6.2 mRNA 40771732 40773666 40771732 ID=MS.gene001981.t1;Parent=MS.gene001981
chr6.2 exon 40771732 40771794 40771732 ID=MS.gene001981.t1.exon1;Parent=MS.gene001981.t1
chr6.2 CDS 40771732 40771794 40771732 ID=cds.MS.gene001981.t1;Parent=MS.gene001981.t1
chr6.2 exon 40772312 40772815 40772312 ID=MS.gene001981.t1.exon2;Parent=MS.gene001981.t1
chr6.2 CDS 40772312 40772815 40772312 ID=cds.MS.gene001981.t1;Parent=MS.gene001981.t1
chr6.2 exon 40772944 40773312 40772944 ID=MS.gene001981.t1.exon3;Parent=MS.gene001981.t1
chr6.2 CDS 40772944 40773312 40772944 ID=cds.MS.gene001981.t1;Parent=MS.gene001981.t1
chr6.2 exon 40773586 40773666 40773586 ID=MS.gene001981.t1.exon4;Parent=MS.gene001981.t1
chr6.2 CDS 40773586 40773666 40773586 ID=cds.MS.gene001981.t1;Parent=MS.gene001981.t1
Gene Sequence

>MS.gene001981

ATGGAAGAAATCAACAATACAACAATGAACGTATCATCAACCAACAGCTGGTTATCTGATTTGGTAAGAAAATCAAAAGTTAAATTCACCCTTCTTATTTTTATTTTTGTTTTGGCTTTCGCACCGGTTTCCGACCCACACCCTTCTTATTTTTATTTTTCTTTTGGCTTTCGCACCGGTTTCCGACCCACTAAAGGTGGGCGACTAATCCGACTCATGTGTAGAGACATGTCTACTGGCCAAGCGTTGTTCCCCTTGGGAATCGAACCCGATATTCCCCATGTACATCCTTGGAAGGAGCTCCTTGCCACTGAAGCGCAAGCAACTTGGTTAACTCTTCTTAATTTCTAAATCCACAAATGTTTTTTATTATAAATTAATTTTTTAAAGATCATGTCAACGAGTGTCTTAAGAGCACTCATTAATGATTTCTAATGAAAAAATTATTCTTTAAAAATGTCAAAAACTTTAACAAAAACTTACTATTTAAAGTTACTAAACGATGCCCTAACAAGAGCGTTTCATTAGCATTTCTCATTCTTTTAATTCATAAGATTTCCTTTTCGTTTTGTTTTTGCAGGAAATGGACGAATACAATTTATTTGCCGAGGAAAGCAACCTGAATTTCCTTGATACAGATGTGGTAGAGTTTCTCTCACATGACATAGGTAATGTATTCCAAGAACAAAGCAGACAACAATGTTTCACTTCGGGGTCCACTCCCATATCTCTTAGTAACTCATCAAGTTATGAAACAAATTTGGATTCTTTTGACTTTGATTTTGATAAGTCAAATATGGAGCTCAAAACAATTGATCATAGCAACAAAATCAATGAAACCTATTCACCAAAACTTTCTTCATCACCATCTAACTCATCTTTTCAGTTTCAAATTCCATCTTTGGACAACACCCCAAATTCACCCACTACTAATTCCTCACAAAACTTGGAAACAAAAACCTCAAAGAGCAAAAGGTCTCGTACTCATCATGGTCAAGATCATATTATGGCTGAGAGAAAGAGAAGAGAGAAACTAACCCAGAACTTCATTGCCCTTGCAGCTCTTGTTCCTAACCTTAAAAAGGTACAATAACTAATTTTCTCACTTACTTATTGATAATAAGATCATGTAATTTTCTTTTTATGAAATAATCTTGGTTACTCTATTTTGTATCACACTACTCACGGATCGATTGGGTAAATATCTGTTAGGTGGACAAATATTCTGTATTAGTCGACACTATCAAATACTTGAAAGAGCTTAAAAAGCGTCTGAAAGTTTTGGAAGAACAAAATGAGAAAACAAAAATAGAGTCACCGATAGTCTTGACCAAACCAGGCCTCTGCAACGATGATAACTCCTCGTCATCTCATGAGAGCATTGATTGTGCTGTTGATTTACCATTTCAAGTGGAAGCAAGAATCTTAGGAAAATATATGTTGATTCGGATCCAATGCCAAGAGCACAAGGGGCTTCTAGTTAAAATTATGGTCGAGATTCAAAGGTTTCAATTATTTGTTGTCAATTATAGTGTCTTACCCTTTGGAAATTCTATCCTAGACATTACCATCATTGCTCAGGTATAAACTATCTCTCTATCTACCTTTAAATTGCCACTAACATTTTTTTCTCTCACAATTTTTATATTTTTGGTGCCATCACTATTACTATTATATTCACAATTATTTTTTAATTATTATTATAATTGCTATCATCTTATAAGAAGTATTTTATTCTAGGTTGTTTTCCACTATAATTGCTCGATATAATCATTTTGTTGTCTTTTGATTTTGGTTTTTTTATTTTTATATTATTTACTATTGTATTTAATACTAATCTTAATTATTTTATAGTTGGGTGAAGGTTACAACATGAGCATAAAGGAACTTGTGAAGAACCTACGCATGGCAGCATTGAAGTTTATGTCATCATAA
Protein sequence

>MS.gene001981.t1

MEEINNTTMNVSSTNSWLSDLEMDEYNLFAEESNLNFLDTDVVEFLSHDIGNVFQEQSRQQCFTSGSTPISLSNSSSYETNLDSFDFDFDKSNMELKTIDHSNKINETYSPKLSSSPSNSSFQFQIPSLDNTPNSPTTNSSQNLETKTSKSKRSRTHHGQDHIMAERKRREKLTQNFIALAALVPNLKKVDKYSVLVDTIKYLKELKKRLKVLEEQNEKTKIESPIVLTKPGLCNDDNSSSSHESIDCAVDLPFQVEARILGKYMLIRIQCQEHKGLLVKIMVEIQRFQLFVVNYSVLPFGNSILDITIIAQLGEGYNMSIKELVKNLRMAALKFMSS