AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001983

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001983.t1 MTR_6g047570 83.714 350 31 3 1 338 1 336 0.0 578
MS.gene001983.t1 MTR_0011s0260 65.659 364 93 5 1 337 1 359 7.42e-154 436
MS.gene001983.t1 MTR_0011s0210 65.205 365 95 5 1 338 1 360 5.84e-152 431
MS.gene001983.t1 MTR_6g047550 82.677 254 27 4 1 239 1 252 2.03e-139 396
MS.gene001983.t1 MTR_4g067010 62.500 352 83 9 1 336 1 319 2.72e-137 393
MS.gene001983.t1 MTR_4g066460 60.870 368 75 7 1 338 1 329 6.62e-135 387
MS.gene001983.t1 MTR_4g066380 63.456 353 85 7 1 337 1 325 3.67e-132 380
MS.gene001983.t1 MTR_0250s0040 62.813 320 60 5 23 338 1 265 7.06e-131 374
MS.gene001983.t1 MTR_0246s0020 56.443 388 110 7 1 338 1 379 4.01e-125 364
MS.gene001983.t1 MTR_4g098035 54.391 353 135 11 1 338 1 342 4.07e-114 335
MS.gene001983.t1 MTR_0246s0020 54.098 366 109 7 1 316 1 357 1.81e-108 321
MS.gene001983.t1 MTR_0246s0050 53.474 331 129 10 22 338 2 321 6.15e-105 310
MS.gene001983.t1 MTR_5g014520 43.653 323 147 9 25 337 36 333 5.66e-65 209
MS.gene001983.t1 MTR_5g014560 42.679 321 127 11 25 337 36 307 2.31e-62 201
MS.gene001983.t1 MTR_4g009540 41.250 240 123 5 111 334 94 331 2.27e-51 173
MS.gene001983.t1 MTR_5g014600 35.376 359 173 11 8 333 2 334 1.38e-49 169
MS.gene001983.t1 MTR_2g010450 44.000 200 97 4 145 336 161 353 5.39e-46 160
MS.gene001983.t1 MTR_4g092700 43.318 217 110 4 126 336 124 333 4.24e-45 157
MS.gene001983.t1 MTR_4g097920 44.444 171 91 2 159 328 138 305 4.42e-45 156
MS.gene001983.t1 MTR_4g097920 44.444 171 91 2 159 328 153 320 6.72e-45 156
MS.gene001983.t1 MTR_4g009540 41.096 219 111 5 111 313 94 310 7.72e-44 153
MS.gene001983.t1 MTR_4g097940 44.444 171 91 3 159 328 153 320 2.95e-43 152
MS.gene001983.t1 MTR_4g097950 46.429 196 90 5 151 335 60 251 1.28e-42 148
MS.gene001983.t1 MTR_2g104490 42.289 201 109 4 133 328 104 302 1.76e-42 149
MS.gene001983.t1 MTR_4g009110 36.885 244 132 5 111 334 109 350 1.86e-42 150
MS.gene001983.t1 MTR_2g104550 42.925 212 109 7 135 337 107 315 3.21e-40 144
MS.gene001983.t1 MTR_8g009020 36.287 237 126 6 116 329 84 318 5.61e-38 138
MS.gene001983.t1 MTR_5g014640 41.573 178 101 2 156 333 149 323 1.88e-36 134
MS.gene001983.t1 MTR_7g080780 39.594 197 109 3 138 334 130 316 4.90e-36 133
MS.gene001983.t1 MTR_7g080780 39.594 197 109 3 138 334 143 329 6.51e-36 133
MS.gene001983.t1 MTR_2g104490 41.398 186 102 4 133 313 104 287 2.12e-35 130
MS.gene001983.t1 MTR_2g104560 34.034 238 135 7 107 335 2 226 1.14e-34 127
MS.gene001983.t1 MTR_2g104650 35.849 265 148 7 83 332 10 267 2.19e-32 122
MS.gene001983.t1 MTR_2g104530 39.286 168 98 1 162 329 106 269 4.06e-31 119
MS.gene001983.t1 MTR_8g009010 34.199 231 98 5 117 329 73 267 2.85e-30 117
MS.gene001983.t1 MTR_2g104500 35.714 238 129 8 110 334 46 272 4.90e-30 115
MS.gene001983.t1 MTR_8g069740 38.333 180 98 4 141 312 91 265 8.03e-29 112
MS.gene001983.t1 MTR_2g104590 33.184 223 108 7 129 332 22 222 2.61e-28 110
MS.gene001983.t1 MTR_5g014550 48.413 126 57 3 191 312 54 175 5.21e-27 105
MS.gene001983.t1 MTR_4g009510 34.146 164 90 5 172 331 53 202 2.04e-23 96.3
MS.gene001983.t1 MTR_4g009420 34.839 155 69 2 184 331 65 194 4.16e-22 92.8
MS.gene001983.t1 MTR_7g451650 37.838 148 82 4 184 331 57 194 7.92e-22 92.0
MS.gene001983.t1 MTR_7g050350 36.620 142 80 4 190 331 1 132 8.56e-20 84.7
MS.gene001983.t1 MTR_7g451650 36.620 142 80 4 190 331 1 132 8.56e-20 84.7
MS.gene001983.t1 MTR_8g067280 33.523 176 97 5 140 297 436 609 8.18e-17 81.6
MS.gene001983.t1 MTR_1g072320 31.081 148 82 3 161 294 470 611 6.38e-16 79.0
MS.gene001983.t1 MTR_7g451650 36.923 130 72 4 184 313 57 176 1.01e-14 72.0
MS.gene001983.t1 MTR_4g009420 33.577 137 59 2 184 313 65 176 1.47e-14 72.0
MS.gene001983.t1 MTR_5g030430 30.481 187 90 6 139 297 466 640 2.38e-14 74.3
MS.gene001983.t1 MTR_8g064700 23.438 256 168 7 71 310 155 398 4.04e-14 73.2
MS.gene001983.t1 MTR_8g024790 31.081 148 83 5 154 290 284 423 4.08e-14 73.2
MS.gene001983.t1 MTR_3g498695 27.461 193 130 2 134 316 271 463 6.67e-14 72.8
MS.gene001983.t1 MTR_8g027495 30.128 156 97 3 161 314 458 603 7.64e-14 72.8
MS.gene001983.t1 MTR_7g117670 29.221 154 101 2 161 314 402 547 1.58e-13 71.6
MS.gene001983.t1 MTR_8g098275 42.500 80 46 0 145 224 385 464 1.61e-13 71.6
MS.gene001983.t1 MTR_8g098275 42.500 80 46 0 145 224 292 371 1.62e-13 71.6
MS.gene001983.t1 MTR_8g098275 42.500 80 46 0 145 224 228 307 1.92e-13 71.2
MS.gene001983.t1 MTR_3g498695 27.461 193 129 3 134 316 271 462 4.69e-13 70.1
MS.gene001983.t1 MTR_8g024770 29.054 148 86 4 137 270 250 392 5.92e-13 69.7
MS.gene001983.t1 MTR_3g030700 30.968 155 102 2 163 312 198 352 1.13e-12 68.6
MS.gene001983.t1 MTR_7g096350 51.852 54 26 0 161 214 355 408 1.40e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001983.t1 AT4G37850 40.756 238 115 7 105 336 111 328 1.40e-44 155
MS.gene001983.t1 AT4G37850 40.756 238 115 7 105 336 111 328 1.40e-44 155
MS.gene001983.t1 AT2G22760 44.615 195 95 6 151 333 102 295 3.16e-44 154
MS.gene001983.t1 AT2G22750 32.964 361 179 13 7 335 3 332 1.99e-37 137
MS.gene001983.t1 AT2G22760 43.678 174 86 5 151 313 102 274 3.71e-37 135
MS.gene001983.t1 AT2G22750 43.367 196 103 3 146 335 111 304 5.11e-37 135
MS.gene001983.t1 AT2G22750 43.367 196 103 3 146 335 135 328 6.08e-37 135
MS.gene001983.t1 AT2G22750 32.964 361 178 14 7 335 3 331 4.50e-36 133
MS.gene001983.t1 AT2G22750 43.367 196 102 4 146 335 111 303 8.42e-36 132
MS.gene001983.t1 AT2G22770 34.728 239 131 5 110 331 87 317 3.49e-35 130
MS.gene001983.t1 AT5G46760 30.220 182 98 8 161 317 415 592 1.20e-16 81.3
MS.gene001983.t1 AT4G17880 34.307 137 80 2 161 292 416 547 2.24e-16 80.5
MS.gene001983.t1 AT1G32640 34.074 135 84 2 161 292 452 584 2.28e-16 80.5
MS.gene001983.t1 AT1G63650 30.178 169 95 5 161 309 405 570 3.20e-15 77.0
MS.gene001983.t1 AT1G63650 30.178 169 95 5 161 309 405 570 3.20e-15 77.0
MS.gene001983.t1 AT1G63650 30.178 169 95 5 161 309 405 570 3.20e-15 77.0
MS.gene001983.t1 AT5G41315 29.189 185 102 6 150 309 436 616 4.34e-14 73.6
MS.gene001983.t1 AT5G41315 29.189 185 102 6 150 309 431 611 4.36e-14 73.6
MS.gene001983.t1 AT5G41315 29.189 185 102 6 150 309 439 619 4.39e-14 73.6
MS.gene001983.t1 AT1G01260 30.000 150 83 2 161 310 433 560 1.59e-13 72.0
MS.gene001983.t1 AT1G01260 30.000 150 83 2 161 310 433 560 1.59e-13 72.0
MS.gene001983.t1 AT1G01260 30.000 150 83 2 161 310 433 560 1.59e-13 72.0
MS.gene001983.t1 AT2G46510 50.000 60 30 0 161 220 395 454 4.03e-13 70.5
MS.gene001983.t1 AT4G16430 47.541 61 32 0 161 221 320 380 3.75e-12 67.4
MS.gene001983.t1 AT4G09820 30.952 126 57 2 162 282 364 464 7.80e-12 66.6
MS.gene001983.t1 AT3G26744 30.303 165 105 2 162 316 308 472 8.41e-12 66.2
MS.gene001983.t1 AT3G26744 30.303 165 105 2 162 316 308 472 8.41e-12 66.2
MS.gene001983.t1 AT3G26744 30.303 165 105 2 162 316 308 472 8.41e-12 66.2
MS.gene001983.t1 AT2G16910 32.258 155 83 6 162 294 315 469 2.26e-11 65.1
MS.gene001983.t1 AT3G26744 30.128 156 99 2 162 307 308 463 3.95e-11 64.3
MS.gene001983.t1 AT1G12860 32.704 159 87 5 162 307 268 419 6.75e-11 63.5
MS.gene001983.t1 AT1G12860 31.953 169 95 5 162 317 268 429 7.10e-11 63.5

Find 49 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTAGTAGTGGGTGAATT+TGG 0.150027 6.2:-41270155 None:intergenic
TCAGTTTCAAATTCCATCTT+TGG 0.246525 6.2:+41270124 MS.gene001983:CDS
AATAACAGTGTCTTACCTTT+TGG 0.250719 6.2:+41270731 MS.gene001983:CDS
AATTAGTAGTGGGTGAATTT+GGG 0.256712 6.2:-41270154 None:intergenic
GGGCCTTCTAGTTAAAATTA+TGG 0.305314 6.2:+41270676 MS.gene001983:CDS
CAAGTGGAAGCAAAAGTCTT+AGG 0.312510 6.2:+41270614 MS.gene001983:CDS
TTACTTAATGTACCTTCTTA+AGG 0.323115 6.2:-41270316 None:intergenic
CATCTGTATCAAGGAAATTC+AGG 0.330296 6.2:-41269860 None:intergenic
GACAGCATTGATTGTGTTGT+TGG 0.353641 6.2:+41270581 MS.gene001983:CDS
TACTAATTCCTCACAAAACT+TGG 0.378617 6.2:+41270169 MS.gene001983:CDS
AAACAACAATGTTTCACTTC+AGG 0.379077 6.2:+41269933 MS.gene001983:CDS
GATGGTGATGAAGAAAGTTT+TGG 0.390876 6.2:-41270089 None:intergenic
TTGTCATCGTTGCAGAGGCC+TGG 0.407480 6.2:-41270542 None:intergenic
ATCGTTGCAGAGGCCTGGTT+TGG 0.420748 6.2:-41270537 None:intergenic
AACAACAATGTTTCACTTCA+GGG 0.435505 6.2:+41269934 MS.gene001983:CDS
TAGGAAAACATATGTTGATT+CGG 0.438258 6.2:+41270633 MS.gene001983:CDS
CGACATTACTATTATTGCTC+AGG 0.443689 6.2:+41270766 MS.gene001983:CDS
TAATGTACCTTCTTAAGGTT+AGG 0.447983 6.2:-41270311 None:intergenic
TTTGGGGTGTTGTCCAAAGA+TGG 0.491872 6.2:-41270137 None:intergenic
AACTGAAAAGATGATTTAGA+TGG 0.501895 6.2:-41270107 None:intergenic
GGATCCAATGTCAAGAGCAC+AGG 0.507133 6.2:+41270654 MS.gene001983:CDS
AAATTATGGTAGAGATTCAA+AGG 0.513560 6.2:+41270690 MS.gene001983:CDS
CCGATAGTCTTGACCAAACC+AGG 0.516025 6.2:+41270524 MS.gene001983:CDS
GGCCCCTGTGCTCTTGACAT+TGG 0.522418 6.2:-41270658 None:intergenic
TCTTGTTCCTAACCTTAAGA+AGG 0.522439 6.2:+41270304 MS.gene001983:CDS
AGGCTACAGCATGAGCATAA+AGG 0.523472 6.2:+41271067 MS.gene001983:CDS
AAAAGGTCTCGTACTCATCA+TGG 0.528225 6.2:+41270212 MS.gene001983:CDS
TCAGAACTTCATTGCTCTTG+CGG 0.540285 6.2:+41270280 MS.gene001983:CDS
ACTCTACCACATCTGTATCA+AGG 0.544071 6.2:-41269869 None:intergenic
CCTGGTTTGGTCAAGACTAT+CGG 0.562604 6.2:-41270524 None:intergenic
TAAATCAGATAACCAGCTGT+TGG 0.567472 6.2:-41269515 None:intergenic
AATGCTGTCATCACATGATG+AGG 0.580177 6.2:-41270567 None:intergenic
TCATGGTCAAGATCATATCA+TGG 0.581035 6.2:+41270229 MS.gene001983:CDS
TCGAGGATAGAATCTCCAAA+AGG 0.583129 6.2:-41270746 None:intergenic
ATGCTGTCATCACATGATGA+GGG 0.591118 6.2:-41270566 None:intergenic
ATTAGTAGTGGGTGAATTTG+GGG 0.592448 6.2:-41270153 None:intergenic
GAGTTTCTCTCACATGACAT+AGG 0.592458 6.2:+41269888 MS.gene001983:CDS
GATGAGTTACTAAGAGATGC+GGG 0.594467 6.2:-41269963 None:intergenic
ACTTCAATGCTGCCATGCGT+AGG 0.601033 6.2:-41271103 None:intergenic
TGTTGGTTTACCATTTCAAG+TGG 0.603001 6.2:+41270598 MS.gene001983:CDS
ACGTATCATCAACCAACAGC+TGG 0.606784 6.2:+41269503 MS.gene001983:CDS
GATCCAATGTCAAGAGCACA+GGG 0.607017 6.2:+41270655 MS.gene001983:CDS
TGATGAGTTACTAAGAGATG+CGG 0.617560 6.2:-41269964 None:intergenic
AGGGGTTGTCATCGTTGCAG+AGG 0.619523 6.2:-41270547 None:intergenic
GAGCAATAATAGTAATGTCG+AGG 0.636001 6.2:-41270763 None:intergenic
GAATTTCCTTGATACAGATG+TGG 0.638336 6.2:+41269863 MS.gene001983:CDS
ACTTGTGAAGAACCTACGCA+TGG 0.684270 6.2:+41271091 MS.gene001983:CDS
TGCTGTCATCACATGATGAG+GGG 0.701593 6.2:-41270565 None:intergenic
ATCCAATGTCAAGAGCACAG+GGG 0.815243 6.2:+41270656 MS.gene001983:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATTGATCAATTATAA+TGG - chr6.2:41270959-41270978 None:intergenic 10.0%
!! TTATAATAAAAAAACATTTG+TGG - chr6.2:41269609-41269628 None:intergenic 10.0%
!!! AATCTTAATTATTTTATAGT+TGG + chr6.2:41271040-41271059 MS.gene001983:intron 10.0%
!!! ATAAGAAATATTTTTATTCT+AGG + chr6.2:41270926-41270945 MS.gene001983:intron 10.0%
!!! ATCTTAATTATTTTATAGTT+GGG + chr6.2:41271041-41271060 MS.gene001983:intron 10.0%
!!! TTTCACAATTTTTTAATTTT+TGG + chr6.2:41270835-41270854 MS.gene001983:intron 10.0%
!! AAGATTAATATTAAATACAG+TGG - chr6.2:41271026-41271045 None:intergenic 15.0%
!! ATTGTGAAAAATAATGTTAA+TGG - chr6.2:41270824-41270843 None:intergenic 15.0%
!! TATAATAATAGTAATAGTGA+TGG - chr6.2:41270863-41270882 None:intergenic 15.0%
!!! ATTTTGTTGTCTTTTTATTT+TGG + chr6.2:41270980-41270999 MS.gene001983:intron 15.0%
! AAATTATGGTAGAGATTCAA+AGG + chr6.2:41270690-41270709 MS.gene001983:CDS 25.0%
! AACTGAAAAGATGATTTAGA+TGG - chr6.2:41270110-41270129 None:intergenic 25.0%
! TTACTTAATGTACCTTCTTA+AGG - chr6.2:41270319-41270338 None:intergenic 25.0%
! TTTAAATGTAGATAGAGAGA+TGG - chr6.2:41270798-41270817 None:intergenic 25.0%
!! TAGGAAAACATATGTTGATT+CGG + chr6.2:41270633-41270652 MS.gene001983:CDS 25.0%
!!! AAGCTCTTTTAAGTATTTGA+TGG - chr6.2:41270450-41270469 None:intergenic 25.0%
!!! ATTATTTTATAGTTGGGTGA+AGG + chr6.2:41271047-41271066 MS.gene001983:intron 25.0%
!!! ATTGTTGTTTGTTTTGTTCT+TGG - chr6.2:41269923-41269942 None:intergenic 25.0%
!!! ATTTTTTTCAGCTCCATATT+TGG - chr6.2:41270035-41270054 None:intergenic 25.0%
!!! CTACCATAATTTTAACTAGA+AGG - chr6.2:41270682-41270701 None:intergenic 25.0%
!!! TGATTTTGATAAGCCAAATA+TGG + chr6.2:41270019-41270038 MS.gene001983:CDS 25.0%
AAACAACAATGTTTCACTTC+AGG + chr6.2:41269933-41269952 MS.gene001983:CDS 30.0%
AACAACAATGTTTCACTTCA+GGG + chr6.2:41269934-41269953 MS.gene001983:CDS 30.0%
TAATGTACCTTCTTAAGGTT+AGG - chr6.2:41270314-41270333 None:intergenic 30.0%
TACTAATTCCTCACAAAACT+TGG + chr6.2:41270169-41270188 MS.gene001983:CDS 30.0%
TCAGTTTCAAATTCCATCTT+TGG + chr6.2:41270124-41270143 MS.gene001983:CDS 30.0%
TCTCACTTATGAAAGAATCT+TGG + chr6.2:41270342-41270361 MS.gene001983:intron 30.0%
! AATAACAGTGTCTTACCTTT+TGG + chr6.2:41270731-41270750 MS.gene001983:CDS 30.0%
! TTTTGTGAGGAATTAGTAGT+GGG - chr6.2:41270167-41270186 None:intergenic 30.0%
!! AATTAGTAGTGGGTGAATTT+GGG - chr6.2:41270157-41270176 None:intergenic 30.0%
!! TGAAGAAAGTTTTGGTGAAA+AGG - chr6.2:41270084-41270103 None:intergenic 30.0%
!! TTTTGTTTCCAAGTTTTGTG+AGG - chr6.2:41270180-41270199 None:intergenic 30.0%
!!! TAAAAAGCGTCTGAAAGTTT+TGG + chr6.2:41270469-41270488 MS.gene001983:CDS 30.0%
AATCACTAATGAGTGCTCTT+AGG - chr6.2:41269664-41269683 None:intergenic 35.0%
CATCTGTATCAAGGAAATTC+AGG - chr6.2:41269863-41269882 None:intergenic 35.0%
CCATTGTGTAACAATCTGTT+AGG + chr6.2:41270397-41270416 MS.gene001983:intron 35.0%
CCATTTCCTGCAAAAACAAA+AGG - chr6.2:41269809-41269828 None:intergenic 35.0%
CCTAACAGATTGTTACACAA+TGG - chr6.2:41270400-41270419 None:intergenic 35.0%
CCTGCAAAAACAAAAGGAAA+AGG - chr6.2:41269803-41269822 None:intergenic 35.0%
CGACATTACTATTATTGCTC+AGG + chr6.2:41270766-41270785 MS.gene001983:CDS 35.0%
GAATTTCCTTGATACAGATG+TGG + chr6.2:41269863-41269882 MS.gene001983:CDS 35.0%
GAGCAATAATAGTAATGTCG+AGG - chr6.2:41270766-41270785 None:intergenic 35.0%
TAAATCAGATAACCAGCTGT+TGG - chr6.2:41269518-41269537 None:intergenic 35.0%
TCATGGTCAAGATCATATCA+TGG + chr6.2:41270229-41270248 MS.gene001983:CDS 35.0%
TCTTGTTCCTAACCTTAAGA+AGG + chr6.2:41270304-41270323 MS.gene001983:CDS 35.0%
TGATGAGTTACTAAGAGATG+CGG - chr6.2:41269967-41269986 None:intergenic 35.0%
TTGTGTAACAATCTGTTAGG+TGG + chr6.2:41270400-41270419 MS.gene001983:intron 35.0%
! ACTTTTGCTTCCACTTGAAA+TGG - chr6.2:41270611-41270630 None:intergenic 35.0%
! GGGCCTTCTAGTTAAAATTA+TGG + chr6.2:41270676-41270695 MS.gene001983:CDS 35.0%
! GTTTTGTGAGGAATTAGTAG+TGG - chr6.2:41270168-41270187 None:intergenic 35.0%
!! ATTAGTAGTGGGTGAATTTG+GGG - chr6.2:41270156-41270175 None:intergenic 35.0%
!! GAATTAGTAGTGGGTGAATT+TGG - chr6.2:41270158-41270177 None:intergenic 35.0%
!! GATGGTGATGAAGAAAGTTT+TGG - chr6.2:41270092-41270111 None:intergenic 35.0%
!! TGTTGGTTTACCATTTCAAG+TGG + chr6.2:41270598-41270617 MS.gene001983:CDS 35.0%
!!! AAATTCAGGTTGCTTTTCTC+AGG - chr6.2:41269849-41269868 None:intergenic 35.0%
!!! CCTTTTCCTTTTGTTTTTGC+AGG + chr6.2:41269800-41269819 MS.gene001983:intron 35.0%
!!! CCTTTTGTTTTTGCAGGAAA+TGG + chr6.2:41269806-41269825 MS.gene001983:intron 35.0%
AAAAGGTCTCGTACTCATCA+TGG + chr6.2:41270212-41270231 MS.gene001983:CDS 40.0%
AATGCTGTCATCACATGATG+AGG - chr6.2:41270570-41270589 None:intergenic 40.0%
ACTCTACCACATCTGTATCA+AGG - chr6.2:41269872-41269891 None:intergenic 40.0%
ATGCTGTCATCACATGATGA+GGG - chr6.2:41270569-41270588 None:intergenic 40.0%
CAAAAACCTCAGAGAGCAAA+AGG + chr6.2:41270195-41270214 MS.gene001983:CDS 40.0%
CAAGTGGAAGCAAAAGTCTT+AGG + chr6.2:41270614-41270633 MS.gene001983:CDS 40.0%
GAGTTTCTCTCACATGACAT+AGG + chr6.2:41269888-41269907 MS.gene001983:CDS 40.0%
GATGAGTTACTAAGAGATGC+GGG - chr6.2:41269966-41269985 None:intergenic 40.0%
TCAGAACTTCATTGCTCTTG+CGG + chr6.2:41270280-41270299 MS.gene001983:CDS 40.0%
TCGAGGATAGAATCTCCAAA+AGG - chr6.2:41270749-41270768 None:intergenic 40.0%
!! GACAGCATTGATTGTGTTGT+TGG + chr6.2:41270581-41270600 MS.gene001983:CDS 40.0%
ACGTATCATCAACCAACAGC+TGG + chr6.2:41269503-41269522 MS.gene001983:CDS 45.0%
ACTTGTGAAGAACCTACGCA+TGG + chr6.2:41271091-41271110 MS.gene001983:CDS 45.0%
AGGCTACAGCATGAGCATAA+AGG + chr6.2:41271067-41271086 MS.gene001983:CDS 45.0%
TGCTGTCATCACATGATGAG+GGG - chr6.2:41270568-41270587 None:intergenic 45.0%
! ATCCAATGTCAAGAGCACAG+GGG + chr6.2:41270656-41270675 MS.gene001983:CDS 45.0%
! CTAATGAAGCGCTCTTGTCA+GGG - chr6.2:41269750-41269769 None:intergenic 45.0%
! GATCCAATGTCAAGAGCACA+GGG + chr6.2:41270655-41270674 MS.gene001983:CDS 45.0%
!! CCTGGTTTGGTCAAGACTAT+CGG - chr6.2:41270527-41270546 None:intergenic 45.0%
!! TTTGGGGTGTTGTCCAAAGA+TGG - chr6.2:41270140-41270159 None:intergenic 45.0%
ACTTCAATGCTGCCATGCGT+AGG - chr6.2:41271106-41271125 None:intergenic 50.0%
AGTGCTCTTAGGAGACTCGT+TGG - chr6.2:41269653-41269672 None:intergenic 50.0%
! ACGAGACCTTTTGCTCTCTG+AGG - chr6.2:41270204-41270223 None:intergenic 50.0%
! CCGATAGTCTTGACCAAACC+AGG + chr6.2:41270524-41270543 MS.gene001983:CDS 50.0%
! GCTAATGAAGCGCTCTTGTC+AGG - chr6.2:41269751-41269770 None:intergenic 50.0%
! GGATCCAATGTCAAGAGCAC+AGG + chr6.2:41270654-41270673 MS.gene001983:CDS 50.0%
AGGGGTTGTCATCGTTGCAG+AGG - chr6.2:41270550-41270569 None:intergenic 55.0%
ATCGTTGCAGAGGCCTGGTT+TGG - chr6.2:41270540-41270559 None:intergenic 55.0%
TTGTCATCGTTGCAGAGGCC+TGG - chr6.2:41270545-41270564 None:intergenic 55.0%
GGCCCCTGTGCTCTTGACAT+TGG - chr6.2:41270661-41270680 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 41269475 41271139 41269475 ID=MS.gene001983
chr6.2 mRNA 41269475 41271139 41269475 ID=MS.gene001983.t1;Parent=MS.gene001983
chr6.2 exon 41269475 41269537 41269475 ID=MS.gene001983.t1.exon1;Parent=MS.gene001983.t1
chr6.2 CDS 41269475 41269537 41269475 ID=cds.MS.gene001983.t1;Parent=MS.gene001983.t1
chr6.2 exon 41269822 41270325 41269822 ID=MS.gene001983.t1.exon2;Parent=MS.gene001983.t1
chr6.2 CDS 41269822 41270325 41269822 ID=cds.MS.gene001983.t1;Parent=MS.gene001983.t1
chr6.2 exon 41270419 41270787 41270419 ID=MS.gene001983.t1.exon3;Parent=MS.gene001983.t1
chr6.2 CDS 41270419 41270787 41270419 ID=cds.MS.gene001983.t1;Parent=MS.gene001983.t1
chr6.2 exon 41271059 41271139 41271059 ID=MS.gene001983.t1.exon4;Parent=MS.gene001983.t1
chr6.2 CDS 41271059 41271139 41271059 ID=cds.MS.gene001983.t1;Parent=MS.gene001983.t1
Gene Sequence

>MS.gene001983

ATGGAAGAAATCAACAACACAACAATGAACGTATCATCAACCAACAGCTGGTTATCTGATTTAGTAAGAAAATCAAAAGTTAAATTCACTCTTCTTAATTTTTAAAGATTAACTCTTCTTATTTTCTAAATCCACAAATGTTTTTTTATTATAAATTAATTTTTTAAAGATTTTGCCAACGAGTCTCCTAAGAGCACTCATTAGTGATTTCTAATTAAAAAATTATTCTTTAAAAATGTCAAAAACTTTAACAAAAACTTAACTAAACAATGCCCTGACAAGAGCGCTTCATTAGCATTTCTCATTCTTTTAATTCATGAAATTTCCTTTTCCTTTTGTTTTTGCAGGAAATGGATGAATACAATTTATTTCCTGAGAAAAGCAACCTGAATTTCCTTGATACAGATGTGGTAGAGTTTCTCTCACATGACATAGGTAATGTATTCCAAGAACAAAACAAACAACAATGTTTCACTTCAGGGTGCACTCCCGCATCTCTTAGTAACTCATCAAGTTATGAAACAAATTTGAACTCTTTTGACTTTGATTTTGATAAGCCAAATATGGAGCTGAAAAAAATTGATCATAGCAACAAAATCAATGAAACCTTTTCACCAAAACTTTCTTCATCACCATCTAAATCATCTTTTCAGTTTCAAATTCCATCTTTGGACAACACCCCAAATTCACCCACTACTAATTCCTCACAAAACTTGGAAACAAAAACCTCAGAGAGCAAAAGGTCTCGTACTCATCATGGTCAAGATCATATCATGGCTGAGAGAAAGAGAAGAGAGAAACTCACTCAGAACTTCATTGCTCTTGCGGCTCTTGTTCCTAACCTTAAGAAGGTACATTAAGTAATTCTCTCACTTATGAAAGAATCTTGGTTACTCTATTTTGTGTCACACTACTCATTGATCCATTGTGTAACAATCTGTTAGGTGGACAAGTATTCTGTATTAGTTGACACCATCAAATACTTAAAAGAGCTTAAAAAGCGTCTGAAAGTTTTGGAAGAACAAAATGAGAAAACAAAAATAGAGTCACCGATAGTCTTGACCAAACCAGGCCTCTGCAACGATGACAACCCCTCATCATGTGATGACAGCATTGATTGTGTTGTTGGTTTACCATTTCAAGTGGAAGCAAAAGTCTTAGGAAAACATATGTTGATTCGGATCCAATGTCAAGAGCACAGGGGCCTTCTAGTTAAAATTATGGTAGAGATTCAAAGGTTTCAACTATTTGTTATCAATAACAGTGTCTTACCTTTTGGAGATTCTATCCTCGACATTACTATTATTGCTCAGGTATATACCATCTCTCTATCTACATTTAAATTGCCATTAACATTATTTTTCACAATTTTTTAATTTTTGGTGCCATCACTATTACTATTATTATATTGACAAATATTTTTTAATTATTATTATAATTGTTATCATCTTATAAGAAATATTTTTATTCTAGGTTGCTTTCCATTATAATTGATCAATATAATCATTTTGTTGTCTTTTTATTTTGGTGTTTTTTTTATATTATTTACCACTGTATTTAATATTAATCTTAATTATTTTATAGTTGGGTGAAGGCTACAGCATGAGCATAAAGGAACTTGTGAAGAACCTACGCATGGCAGCATTGAAGTTTATGTCATCGTAA
Protein sequence

>MS.gene001983.t1

MEEINNTTMNVSSTNSWLSDLEMDEYNLFPEKSNLNFLDTDVVEFLSHDIGNVFQEQNKQQCFTSGCTPASLSNSSSYETNLNSFDFDFDKPNMELKKIDHSNKINETFSPKLSSSPSKSSFQFQIPSLDNTPNSPTTNSSQNLETKTSESKRSRTHHGQDHIMAERKRREKLTQNFIALAALVPNLKKVDKYSVLVDTIKYLKELKKRLKVLEEQNEKTKIESPIVLTKPGLCNDDNPSSCDDSIDCVVGLPFQVEAKVLGKHMLIRIQCQEHRGLLVKIMVEIQRFQLFVINNSVLPFGDSILDITIIAQLGEGYSMSIKELVKNLRMAALKFMSS