AlfalfaGEDB | MS.gene001983

M. sativa cultivar XinJiangDaYe / MS.gene001983

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001983.t1	XP_013452170.1	83.7	350	31	3	1	338	1	336	2.50E-148	535

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001983.t1	Q9T072	40.8	238	115	7	105	336	111	328	7.3e-32	139.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001983.t1	A0A072UAR9	83.7	350	31	3	1	338	1	336	1.8e-148	535.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene001983.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001983.t1	MTR_6g047570	83.714	350	31	3	1	338	1	336	0.0	578
MS.gene001983.t1	MTR_0011s0260	65.659	364	93	5	1	337	1	359	7.42e-154	436
MS.gene001983.t1	MTR_0011s0210	65.205	365	95	5	1	338	1	360	5.84e-152	431
MS.gene001983.t1	MTR_6g047550	82.677	254	27	4	1	239	1	252	2.03e-139	396
MS.gene001983.t1	MTR_4g067010	62.500	352	83	9	1	336	1	319	2.72e-137	393
MS.gene001983.t1	MTR_4g066460	60.870	368	75	7	1	338	1	329	6.62e-135	387
MS.gene001983.t1	MTR_4g066380	63.456	353	85	7	1	337	1	325	3.67e-132	380
MS.gene001983.t1	MTR_0250s0040	62.813	320	60	5	23	338	1	265	7.06e-131	374
MS.gene001983.t1	MTR_0246s0020	56.443	388	110	7	1	338	1	379	4.01e-125	364
MS.gene001983.t1	MTR_4g098035	54.391	353	135	11	1	338	1	342	4.07e-114	335

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001983.t1	AT4G37850	40.756	238	115	7	105	336	111	328	1.40e-44	155
MS.gene001983.t1	AT4G37850	40.756	238	115	7	105	336	111	328	1.40e-44	155
MS.gene001983.t1	AT2G22760	44.615	195	95	6	151	333	102	295	3.16e-44	154
MS.gene001983.t1	AT2G22750	32.964	361	179	13	7	335	3	332	1.99e-37	137
MS.gene001983.t1	AT2G22760	43.678	174	86	5	151	313	102	274	3.71e-37	135
MS.gene001983.t1	AT2G22750	43.367	196	103	3	146	335	111	304	5.11e-37	135
MS.gene001983.t1	AT2G22750	43.367	196	103	3	146	335	135	328	6.08e-37	135
MS.gene001983.t1	AT2G22750	32.964	361	178	14	7	335	3	331	4.50e-36	133
MS.gene001983.t1	AT2G22750	43.367	196	102	4	146	335	111	303	8.42e-36	132
MS.gene001983.t1	AT2G22770	34.728	239	131	5	110	331	87	317	3.49e-35	130

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Find 49 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTCTCGTACTCATCA+TGG	0.528225	6.2:+41270212	MS.gene001983:CDS
AAACAACAATGTTTCACTTC+AGG	0.379077	6.2:+41269933	MS.gene001983:CDS
AAATTATGGTAGAGATTCAA+AGG	0.513560	6.2:+41270690	MS.gene001983:CDS
AACAACAATGTTTCACTTCA+GGG	0.435505	6.2:+41269934	MS.gene001983:CDS
AACTGAAAAGATGATTTAGA+TGG	0.501895	6.2:-41270107	None:intergenic
AATAACAGTGTCTTACCTTT+TGG	0.250719	6.2:+41270731	MS.gene001983:CDS
AATGCTGTCATCACATGATG+AGG	0.580177	6.2:-41270567	None:intergenic
AATTAGTAGTGGGTGAATTT+GGG	0.256712	6.2:-41270154	None:intergenic
ACGTATCATCAACCAACAGC+TGG	0.606784	6.2:+41269503	MS.gene001983:CDS
ACTCTACCACATCTGTATCA+AGG	0.544071	6.2:-41269869	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAACAATGTTTCACTTC+AGG	+	chr6.2:41269933-41269952	MS.gene001983:CDS	30.0%
AACAACAATGTTTCACTTCA+GGG	+	chr6.2:41269934-41269953	MS.gene001983:CDS	30.0%
TAATGTACCTTCTTAAGGTT+AGG	-	chr6.2:41270314-41270333	None:intergenic	30.0%
TACTAATTCCTCACAAAACT+TGG	+	chr6.2:41270169-41270188	MS.gene001983:CDS	30.0%
TCAGTTTCAAATTCCATCTT+TGG	+	chr6.2:41270124-41270143	MS.gene001983:CDS	30.0%
TCTCACTTATGAAAGAATCT+TGG	+	chr6.2:41270342-41270361	MS.gene001983:intron	30.0%
AATCACTAATGAGTGCTCTT+AGG	-	chr6.2:41269664-41269683	None:intergenic	35.0%
CATCTGTATCAAGGAAATTC+AGG	-	chr6.2:41269863-41269882	None:intergenic	35.0%
CCATTGTGTAACAATCTGTT+AGG	+	chr6.2:41270397-41270416	MS.gene001983:intron	35.0%
CCATTTCCTGCAAAAACAAA+AGG	-	chr6.2:41269809-41269828	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	41269475	41271139	41269475	ID=MS.gene001983
chr6.2	mRNA	41269475	41271139	41269475	ID=MS.gene001983.t1;Parent=MS.gene001983
chr6.2	exon	41269475	41269537	41269475	ID=MS.gene001983.t1.exon1;Parent=MS.gene001983.t1
chr6.2	CDS	41269475	41269537	41269475	ID=cds.MS.gene001983.t1;Parent=MS.gene001983.t1
chr6.2	exon	41269822	41270325	41269822	ID=MS.gene001983.t1.exon2;Parent=MS.gene001983.t1
chr6.2	CDS	41269822	41270325	41269822	ID=cds.MS.gene001983.t1;Parent=MS.gene001983.t1
chr6.2	exon	41270419	41270787	41270419	ID=MS.gene001983.t1.exon3;Parent=MS.gene001983.t1
chr6.2	CDS	41270419	41270787	41270419	ID=cds.MS.gene001983.t1;Parent=MS.gene001983.t1
chr6.2	exon	41271059	41271139	41271059	ID=MS.gene001983.t1.exon4;Parent=MS.gene001983.t1
chr6.2	CDS	41271059	41271139	41271059	ID=cds.MS.gene001983.t1;Parent=MS.gene001983.t1

Gene Sequence

>MS.gene001983

ATGGAAGAAATCAACAACACAACAATGAACGTATCATCAACCAACAGCTGGTTATCTGATTTAGTAAGAAAATCAAAAGTTAAATTCACTCTTCTTAATTTTTAAAGATTAACTCTTCTTATTTTCTAAATCCACAAATGTTTTTTTATTATAAATTAATTTTTTAAAGATTTTGCCAACGAGTCTCCTAAGAGCACTCATTAGTGATTTCTAATTAAAAAATTATTCTTTAAAAATGTCAAAAACTTTAACAAAAACTTAACTAAACAATGCCCTGACAAGAGCGCTTCATTAGCATTTCTCATTCTTTTAATTCATGAAATTTCCTTTTCCTTTTGTTTTTGCAGGAAATGGATGAATACAATTTATTTCCTGAGAAAAGCAACCTGAATTTCCTTGATACAGATGTGGTAGAGTTTCTCTCACATGACATAGGTAATGTATTCCAAGAACAAAACAAACAACAATGTTTCACTTCAGGGTGCACTCCCGCATCTCTTAGTAACTCATCAAGTTATGAAACAAATTTGAACTCTTTTGACTTTGATTTTGATAAGCCAAATATGGAGCTGAAAAAAATTGATCATAGCAACAAAATCAATGAAACCTTTTCACCAAAACTTTCTTCATCACCATCTAAATCATCTTTTCAGTTTCAAATTCCATCTTTGGACAACACCCCAAATTCACCCACTACTAATTCCTCACAAAACTTGGAAACAAAAACCTCAGAGAGCAAAAGGTCTCGTACTCATCATGGTCAAGATCATATCATGGCTGAGAGAAAGAGAAGAGAGAAACTCACTCAGAACTTCATTGCTCTTGCGGCTCTTGTTCCTAACCTTAAGAAGGTACATTAAGTAATTCTCTCACTTATGAAAGAATCTTGGTTACTCTATTTTGTGTCACACTACTCATTGATCCATTGTGTAACAATCTGTTAGGTGGACAAGTATTCTGTATTAGTTGACACCATCAAATACTTAAAAGAGCTTAAAAAGCGTCTGAAAGTTTTGGAAGAACAAAATGAGAAAACAAAAATAGAGTCACCGATAGTCTTGACCAAACCAGGCCTCTGCAACGATGACAACCCCTCATCATGTGATGACAGCATTGATTGTGTTGTTGGTTTACCATTTCAAGTGGAAGCAAAAGTCTTAGGAAAACATATGTTGATTCGGATCCAATGTCAAGAGCACAGGGGCCTTCTAGTTAAAATTATGGTAGAGATTCAAAGGTTTCAACTATTTGTTATCAATAACAGTGTCTTACCTTTTGGAGATTCTATCCTCGACATTACTATTATTGCTCAGGTATATACCATCTCTCTATCTACATTTAAATTGCCATTAACATTATTTTTCACAATTTTTTAATTTTTGGTGCCATCACTATTACTATTATTATATTGACAAATATTTTTTAATTATTATTATAATTGTTATCATCTTATAAGAAATATTTTTATTCTAGGTTGCTTTCCATTATAATTGATCAATATAATCATTTTGTTGTCTTTTTATTTTGGTGTTTTTTTTATATTATTTACCACTGTATTTAATATTAATCTTAATTATTTTATAGTTGGGTGAAGGCTACAGCATGAGCATAAAGGAACTTGTGAAGAACCTACGCATGGCAGCATTGAAGTTTATGTCATCGTAA

Protein sequence

>MS.gene001983.t1

MEEINNTTMNVSSTNSWLSDLEMDEYNLFPEKSNLNFLDTDVVEFLSHDIGNVFQEQNKQQCFTSGCTPASLSNSSSYETNLNSFDFDFDKPNMELKKIDHSNKINETFSPKLSSSPSKSSFQFQIPSLDNTPNSPTTNSSQNLETKTSESKRSRTHHGQDHIMAERKRREKLTQNFIALAALVPNLKKVDKYSVLVDTIKYLKELKKRLKVLEEQNEKTKIESPIVLTKPGLCNDDNPSSCDDSIDCVVGLPFQVEAKVLGKHMLIRIQCQEHRGLLVKIMVEIQRFQLFVINNSVLPFGDSILDITIIAQLGEGYSMSIKELVKNLRMAALKFMSS