Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002000.t1 | XP_003592874.1 | 95 | 614 | 6 | 1 | 1 | 589 | 1 | 614 | 0.00E+00 | 1172.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002000.t1 | Q8L7G0 | 68.5 | 622 | 147 | 7 | 2 | 589 | 3 | 609 | 3.4e-234 | 812.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002000.t1 | G7IL56 | 95.0 | 614 | 6 | 1 | 1 | 589 | 1 | 614 | 0.0e+00 | 1172.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene002000.t1 | TF | B3-ARF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002000.t1 | MTR_2g005240 | 94.951 | 614 | 6 | 1 | 1 | 589 | 1 | 614 | 0.0 | 1196 |
MS.gene002000.t1 | MTR_8g027440 | 50.400 | 625 | 241 | 15 | 14 | 589 | 20 | 624 | 0.0 | 552 |
MS.gene002000.t1 | MTR_4g021580 | 51.648 | 637 | 239 | 16 | 4 | 589 | 3 | 621 | 0.0 | 548 |
MS.gene002000.t1 | MTR_4g021580 | 51.648 | 637 | 239 | 16 | 4 | 589 | 3 | 621 | 0.0 | 547 |
MS.gene002000.t1 | MTR_8g100050 | 61.731 | 439 | 157 | 3 | 7 | 441 | 43 | 474 | 0.0 | 546 |
MS.gene002000.t1 | MTR_8g100050 | 32.051 | 156 | 70 | 4 | 470 | 589 | 622 | 777 | 3.95e-11 | 66.6 |
MS.gene002000.t1 | MTR_8g100050 | 61.731 | 439 | 157 | 3 | 7 | 441 | 43 | 474 | 0.0 | 545 |
MS.gene002000.t1 | MTR_7g062540 | 67.480 | 369 | 113 | 4 | 18 | 384 | 9 | 372 | 5.84e-175 | 511 |
MS.gene002000.t1 | MTR_2g093740 | 52.316 | 367 | 160 | 4 | 21 | 374 | 54 | 418 | 2.13e-128 | 392 |
MS.gene002000.t1 | MTR_2g093740 | 52.316 | 367 | 160 | 4 | 21 | 374 | 54 | 418 | 1.84e-127 | 392 |
MS.gene002000.t1 | MTR_2g093740 | 52.316 | 367 | 160 | 4 | 21 | 374 | 54 | 418 | 5.38e-127 | 392 |
MS.gene002000.t1 | MTR_2g018690 | 54.918 | 366 | 160 | 4 | 19 | 380 | 19 | 383 | 1.58e-124 | 389 |
MS.gene002000.t1 | MTR_2g093740 | 50.526 | 380 | 160 | 5 | 21 | 374 | 54 | 431 | 1.87e-124 | 383 |
MS.gene002000.t1 | MTR_4g060460 | 49.730 | 370 | 173 | 3 | 21 | 378 | 52 | 420 | 9.83e-124 | 383 |
MS.gene002000.t1 | MTR_4g060460 | 49.730 | 370 | 173 | 3 | 21 | 378 | 52 | 420 | 9.92e-124 | 383 |
MS.gene002000.t1 | MTR_2g093740 | 50.526 | 380 | 160 | 5 | 21 | 374 | 54 | 431 | 1.58e-123 | 382 |
MS.gene002000.t1 | MTR_8g079492 | 54.521 | 365 | 162 | 3 | 19 | 380 | 19 | 382 | 2.95e-123 | 385 |
MS.gene002000.t1 | MTR_8g079492 | 54.521 | 365 | 162 | 3 | 19 | 380 | 19 | 382 | 3.68e-123 | 385 |
MS.gene002000.t1 | MTR_2g093740 | 50.526 | 380 | 160 | 5 | 21 | 374 | 54 | 431 | 3.94e-123 | 383 |
MS.gene002000.t1 | MTR_3g064050 | 54.913 | 346 | 151 | 4 | 19 | 360 | 22 | 366 | 1.18e-121 | 379 |
MS.gene002000.t1 | MTR_5g076270 | 54.108 | 353 | 153 | 4 | 14 | 360 | 15 | 364 | 5.83e-121 | 377 |
MS.gene002000.t1 | MTR_4g088210 | 49.468 | 376 | 162 | 5 | 23 | 381 | 38 | 402 | 2.11e-116 | 362 |
MS.gene002000.t1 | MTR_4g088210 | 49.468 | 376 | 162 | 5 | 23 | 381 | 38 | 402 | 4.00e-116 | 361 |
MS.gene002000.t1 | MTR_2g014770 | 49.724 | 362 | 165 | 3 | 23 | 374 | 53 | 407 | 1.10e-113 | 352 |
MS.gene002000.t1 | MTR_2g014770 | 49.724 | 362 | 165 | 3 | 23 | 374 | 53 | 407 | 5.97e-113 | 352 |
MS.gene002000.t1 | MTR_1g024025 | 53.550 | 338 | 155 | 2 | 19 | 354 | 39 | 376 | 6.24e-112 | 363 |
MS.gene002000.t1 | MTR_1g024025 | 50.617 | 81 | 38 | 1 | 215 | 295 | 862 | 940 | 2.84e-13 | 73.6 |
MS.gene002000.t1 | MTR_4g124900 | 54.386 | 342 | 151 | 4 | 20 | 358 | 20 | 359 | 1.72e-111 | 358 |
MS.gene002000.t1 | MTR_4g124900 | 54.227 | 343 | 152 | 4 | 19 | 358 | 19 | 359 | 2.62e-111 | 358 |
MS.gene002000.t1 | MTR_2g043250 | 53.644 | 343 | 154 | 4 | 19 | 358 | 19 | 359 | 2.45e-109 | 353 |
MS.gene002000.t1 | MTR_8g101360 | 51.105 | 362 | 163 | 6 | 6 | 358 | 13 | 369 | 1.51e-107 | 348 |
MS.gene002000.t1 | MTR_8g079492 | 55.482 | 301 | 130 | 3 | 83 | 380 | 1 | 300 | 4.22e-97 | 315 |
MS.gene002000.t1 | MTR_2g093740 | 55.598 | 259 | 114 | 1 | 117 | 374 | 30 | 288 | 2.45e-94 | 302 |
MS.gene002000.t1 | MTR_2g093740 | 55.598 | 259 | 114 | 1 | 117 | 374 | 30 | 288 | 7.17e-94 | 302 |
MS.gene002000.t1 | MTR_2g093740 | 52.941 | 272 | 114 | 2 | 117 | 374 | 30 | 301 | 1.74e-90 | 292 |
MS.gene002000.t1 | MTR_2g093740 | 52.941 | 272 | 114 | 2 | 117 | 374 | 30 | 301 | 4.05e-90 | 293 |
MS.gene002000.t1 | MTR_8g446900 | 44.781 | 297 | 156 | 4 | 64 | 358 | 2 | 292 | 2.08e-80 | 258 |
MS.gene002000.t1 | MTR_2g094570 | 40.000 | 380 | 172 | 9 | 23 | 358 | 11 | 378 | 1.62e-72 | 245 |
MS.gene002000.t1 | MTR_2g094570 | 40.000 | 380 | 172 | 9 | 23 | 358 | 11 | 378 | 1.66e-72 | 246 |
MS.gene002000.t1 | MTR_2g094570 | 40.000 | 380 | 172 | 9 | 23 | 358 | 67 | 434 | 5.15e-72 | 246 |
MS.gene002000.t1 | MTR_4g058930 | 37.871 | 404 | 196 | 8 | 23 | 378 | 12 | 408 | 1.33e-69 | 238 |
MS.gene002000.t1 | MTR_4g058930 | 37.871 | 404 | 196 | 8 | 23 | 378 | 12 | 408 | 2.25e-69 | 238 |
MS.gene002000.t1 | MTR_1g094960 | 36.962 | 395 | 195 | 7 | 15 | 366 | 11 | 394 | 4.06e-69 | 235 |
MS.gene002000.t1 | MTR_3g073420 | 37.852 | 391 | 202 | 8 | 19 | 374 | 15 | 399 | 1.30e-67 | 230 |
MS.gene002000.t1 | MTR_1g064430 | 36.250 | 400 | 201 | 7 | 23 | 374 | 27 | 420 | 1.64e-67 | 232 |
MS.gene002000.t1 | MTR_1g064430 | 36.250 | 400 | 201 | 7 | 23 | 374 | 40 | 433 | 2.32e-67 | 232 |
MS.gene002000.t1 | MTR_7g101280 | 35.294 | 425 | 216 | 10 | 15 | 387 | 23 | 440 | 2.86e-66 | 228 |
MS.gene002000.t1 | MTR_0041s0110 | 35.294 | 425 | 216 | 10 | 15 | 387 | 23 | 440 | 2.86e-66 | 228 |
MS.gene002000.t1 | MTR_5g061220 | 34.127 | 378 | 213 | 7 | 23 | 374 | 19 | 386 | 6.93e-58 | 202 |
MS.gene002000.t1 | MTR_5g040880 | 35.135 | 370 | 199 | 10 | 22 | 375 | 10 | 354 | 2.18e-56 | 198 |
MS.gene002000.t1 | MTR_7g101275 | 37.975 | 316 | 178 | 7 | 32 | 339 | 1 | 306 | 2.37e-56 | 195 |
MS.gene002000.t1 | MTR_1g058210 | 33.528 | 343 | 214 | 7 | 23 | 361 | 12 | 344 | 9.22e-51 | 182 |
MS.gene002000.t1 | MTR_2g024430 | 35.537 | 363 | 193 | 14 | 23 | 369 | 20 | 357 | 1.71e-50 | 182 |
MS.gene002000.t1 | MTR_0041s0120 | 34.462 | 325 | 189 | 8 | 32 | 339 | 1 | 318 | 4.42e-46 | 168 |
MS.gene002000.t1 | MTR_5g082140 | 32.500 | 360 | 219 | 9 | 22 | 372 | 11 | 355 | 4.92e-46 | 169 |
MS.gene002000.t1 | MTR_2g006270 | 33.041 | 342 | 216 | 6 | 23 | 362 | 13 | 343 | 9.96e-46 | 168 |
MS.gene002000.t1 | MTR_5g040740 | 33.634 | 333 | 186 | 11 | 23 | 342 | 12 | 322 | 4.49e-43 | 159 |
MS.gene002000.t1 | MTR_2g006380 | 30.636 | 346 | 205 | 10 | 20 | 354 | 17 | 338 | 2.56e-41 | 155 |
MS.gene002000.t1 | MTR_5g060780 | 29.765 | 383 | 227 | 11 | 23 | 386 | 12 | 371 | 1.68e-39 | 149 |
MS.gene002000.t1 | MTR_5g061890 | 30.026 | 383 | 226 | 11 | 23 | 386 | 12 | 371 | 3.53e-39 | 148 |
MS.gene002000.t1 | MTR_5g460920 | 29.765 | 383 | 227 | 11 | 23 | 386 | 12 | 371 | 5.74e-39 | 147 |
MS.gene002000.t1 | MTR_5g062970 | 37.113 | 194 | 114 | 3 | 23 | 213 | 38 | 226 | 1.94e-35 | 134 |
MS.gene002000.t1 | MTR_5g060630 | 28.272 | 382 | 228 | 12 | 23 | 368 | 12 | 383 | 2.57e-35 | 140 |
MS.gene002000.t1 | MTR_5g460740 | 28.272 | 382 | 228 | 12 | 23 | 368 | 12 | 383 | 2.57e-35 | 140 |
MS.gene002000.t1 | MTR_3g064050 | 52.713 | 129 | 60 | 1 | 233 | 360 | 1 | 129 | 5.21e-33 | 134 |
MS.gene002000.t1 | MTR_5g074840 | 37.500 | 184 | 82 | 5 | 101 | 283 | 4 | 155 | 3.73e-23 | 96.7 |
MS.gene002000.t1 | MTR_5g032260 | 37.705 | 122 | 71 | 2 | 233 | 353 | 37 | 154 | 1.13e-17 | 85.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002000.t1 | AT1G59750 | 70.227 | 618 | 138 | 7 | 2 | 589 | 3 | 604 | 0.0 | 853 |
MS.gene002000.t1 | AT1G59750 | 70.113 | 619 | 139 | 7 | 2 | 589 | 3 | 606 | 0.0 | 852 |
MS.gene002000.t1 | AT1G59750 | 69.775 | 622 | 139 | 7 | 2 | 589 | 3 | 609 | 0.0 | 850 |
MS.gene002000.t1 | AT1G59750 | 69.775 | 622 | 139 | 7 | 2 | 589 | 3 | 609 | 0.0 | 850 |
MS.gene002000.t1 | AT5G62000 | 68.687 | 396 | 121 | 2 | 7 | 399 | 45 | 440 | 0.0 | 568 |
MS.gene002000.t1 | AT5G62000 | 28.500 | 200 | 100 | 8 | 428 | 589 | 606 | 800 | 7.88e-12 | 68.9 |
MS.gene002000.t1 | AT5G62000 | 68.687 | 396 | 121 | 2 | 7 | 399 | 45 | 440 | 0.0 | 568 |
MS.gene002000.t1 | AT5G62000 | 28.500 | 200 | 100 | 8 | 428 | 589 | 606 | 800 | 7.88e-12 | 68.9 |
MS.gene002000.t1 | AT5G62000 | 68.687 | 396 | 121 | 2 | 7 | 399 | 45 | 440 | 0.0 | 568 |
MS.gene002000.t1 | AT5G62000 | 28.500 | 200 | 100 | 8 | 428 | 589 | 606 | 800 | 7.88e-12 | 68.9 |
MS.gene002000.t1 | AT5G62000 | 68.687 | 396 | 121 | 2 | 7 | 399 | 45 | 440 | 0.0 | 568 |
MS.gene002000.t1 | AT5G62000 | 28.500 | 200 | 100 | 8 | 428 | 589 | 606 | 800 | 7.88e-12 | 68.9 |
MS.gene002000.t1 | AT5G62000 | 68.687 | 396 | 121 | 2 | 7 | 399 | 45 | 440 | 0.0 | 567 |
MS.gene002000.t1 | AT5G62000 | 28.500 | 200 | 100 | 8 | 428 | 589 | 606 | 800 | 6.78e-12 | 68.9 |
MS.gene002000.t1 | AT2G46530 | 51.809 | 608 | 214 | 13 | 6 | 589 | 25 | 577 | 0.0 | 559 |
MS.gene002000.t1 | AT2G46530 | 52.080 | 601 | 209 | 13 | 13 | 589 | 11 | 556 | 0.0 | 558 |
MS.gene002000.t1 | AT3G61830 | 53.051 | 590 | 221 | 15 | 10 | 589 | 12 | 555 | 0.0 | 548 |
MS.gene002000.t1 | AT4G23980 | 50.897 | 613 | 238 | 14 | 13 | 589 | 2 | 587 | 1.79e-177 | 516 |
MS.gene002000.t1 | AT4G23980 | 50.651 | 614 | 240 | 14 | 13 | 589 | 2 | 589 | 2.51e-177 | 516 |
MS.gene002000.t1 | AT3G61830 | 52.364 | 550 | 206 | 15 | 50 | 589 | 1 | 504 | 4.89e-169 | 492 |
MS.gene002000.t1 | AT2G46530 | 48.077 | 520 | 190 | 13 | 95 | 589 | 5 | 469 | 5.98e-142 | 421 |
MS.gene002000.t1 | AT1G34310 | 40.717 | 614 | 260 | 18 | 20 | 589 | 24 | 577 | 6.81e-137 | 411 |
MS.gene002000.t1 | AT1G34410 | 40.328 | 610 | 268 | 16 | 20 | 589 | 24 | 577 | 1.21e-136 | 411 |
MS.gene002000.t1 | AT1G34390 | 41.272 | 613 | 256 | 17 | 20 | 589 | 24 | 575 | 4.59e-134 | 404 |
MS.gene002000.t1 | AT1G35520 | 52.279 | 373 | 169 | 4 | 2 | 374 | 9 | 372 | 6.34e-131 | 396 |
MS.gene002000.t1 | AT1G35540 | 53.521 | 355 | 159 | 3 | 20 | 374 | 24 | 372 | 3.20e-130 | 394 |
MS.gene002000.t1 | AT1G35240 | 53.803 | 355 | 158 | 3 | 20 | 374 | 24 | 372 | 8.61e-130 | 393 |
MS.gene002000.t1 | AT1G34170 | 46.115 | 399 | 193 | 7 | 16 | 402 | 18 | 406 | 1.89e-122 | 371 |
MS.gene002000.t1 | AT1G30330 | 55.191 | 366 | 159 | 4 | 19 | 380 | 21 | 385 | 2.13e-122 | 384 |
MS.gene002000.t1 | AT1G30330 | 55.191 | 366 | 159 | 4 | 19 | 380 | 21 | 385 | 2.13e-122 | 384 |
MS.gene002000.t1 | AT5G37020 | 55.362 | 345 | 149 | 4 | 20 | 360 | 19 | 362 | 2.46e-122 | 379 |
MS.gene002000.t1 | AT1G30330 | 55.191 | 366 | 159 | 4 | 19 | 380 | 19 | 383 | 3.72e-122 | 383 |
MS.gene002000.t1 | AT5G37020 | 55.362 | 345 | 149 | 4 | 20 | 360 | 19 | 362 | 1.21e-121 | 379 |
MS.gene002000.t1 | AT5G60450 | 49.198 | 374 | 177 | 3 | 19 | 381 | 37 | 408 | 2.52e-119 | 371 |
MS.gene002000.t1 | AT5G60450 | 49.330 | 373 | 176 | 3 | 20 | 381 | 62 | 432 | 7.11e-119 | 370 |
MS.gene002000.t1 | AT1G19850 | 51.989 | 352 | 166 | 3 | 6 | 354 | 26 | 377 | 9.16e-116 | 365 |
MS.gene002000.t1 | AT1G19850 | 51.989 | 352 | 166 | 3 | 6 | 354 | 37 | 388 | 9.75e-116 | 365 |
MS.gene002000.t1 | AT1G34170 | 43.609 | 399 | 177 | 7 | 16 | 402 | 18 | 380 | 1.16e-109 | 337 |
MS.gene002000.t1 | AT1G34170 | 43.609 | 399 | 177 | 7 | 16 | 402 | 18 | 380 | 1.39e-108 | 337 |
MS.gene002000.t1 | AT2G33860 | 48.066 | 362 | 171 | 3 | 23 | 374 | 54 | 408 | 3.26e-108 | 338 |
MS.gene002000.t1 | AT5G20730 | 51.087 | 368 | 175 | 4 | 20 | 384 | 21 | 386 | 6.57e-108 | 350 |
MS.gene002000.t1 | AT1G19220 | 50.543 | 368 | 177 | 4 | 20 | 384 | 20 | 385 | 2.75e-106 | 344 |
MS.gene002000.t1 | AT5G20730 | 50.949 | 369 | 175 | 5 | 20 | 384 | 21 | 387 | 3.31e-106 | 345 |
MS.gene002000.t1 | AT5G20730 | 50.949 | 369 | 175 | 5 | 20 | 384 | 21 | 387 | 5.20e-106 | 345 |
MS.gene002000.t1 | AT5G37020 | 56.343 | 268 | 113 | 3 | 96 | 360 | 1 | 267 | 5.53e-89 | 290 |
MS.gene002000.t1 | AT2G33860 | 52.400 | 250 | 119 | 0 | 125 | 374 | 2 | 251 | 2.40e-80 | 260 |
MS.gene002000.t1 | AT4G30080 | 38.660 | 388 | 191 | 6 | 14 | 361 | 10 | 390 | 4.58e-72 | 244 |
MS.gene002000.t1 | AT1G43950 | 50.679 | 221 | 103 | 3 | 4 | 224 | 8 | 222 | 7.46e-72 | 230 |
MS.gene002000.t1 | AT2G28350 | 36.973 | 403 | 196 | 6 | 23 | 376 | 10 | 403 | 3.11e-71 | 242 |
MS.gene002000.t1 | AT2G28350 | 36.973 | 403 | 196 | 6 | 23 | 376 | 10 | 403 | 5.06e-71 | 242 |
MS.gene002000.t1 | AT1G77850 | 33.938 | 386 | 209 | 7 | 6 | 354 | 1 | 377 | 1.12e-58 | 206 |
MS.gene002000.t1 | AT1G77850 | 33.938 | 386 | 209 | 7 | 6 | 354 | 1 | 377 | 1.83e-58 | 206 |
Find 161 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGCATGCATCTTGGTGTTT+TGG | 0.186948 | 2.2:-73996707 | MS.gene002000:CDS |
CAGCTCACACACCTTCTTTC+AGG | 0.198099 | 2.2:+73996251 | None:intergenic |
GCAACTAGCTTTCTTGGTTT+TGG | 0.225356 | 2.2:-73995341 | MS.gene002000:CDS |
AGCATCCTTACATCGGTTTC+AGG | 0.238212 | 2.2:+74001993 | None:intergenic |
TCTACTGCAACTAGCTTTCT+TGG | 0.242410 | 2.2:-73995347 | MS.gene002000:CDS |
TGGGTTGGCTGGGAGTTTGC+TGG | 0.246865 | 2.2:+73995602 | None:intergenic |
TCTTGTTTCGTTGGGTTGGC+TGG | 0.249406 | 2.2:+73995591 | None:intergenic |
TTAAGTGCTACAGGTGAAAA+AGG | 0.249676 | 2.2:+73995254 | None:intergenic |
GCATATACTTCATCTGATTC+AGG | 0.278886 | 2.2:+74002032 | None:intergenic |
GGAAATGGCTGTAGGCTCTT+TGG | 0.292769 | 2.2:-73995203 | MS.gene002000:CDS |
TCAGACCGATTAACATTTGA+TGG | 0.307170 | 2.2:+73995059 | None:intergenic |
GAAATGGCTGTAGGCTCTTT+GGG | 0.307324 | 2.2:-73995202 | MS.gene002000:CDS |
TTCTGAGTGGCGATCGTTAA+AGG | 0.310585 | 2.2:-73996100 | MS.gene002000:intron |
TAGAGTTTCTCCATGGGAAT+TGG | 0.341674 | 2.2:-73995645 | MS.gene002000:CDS |
ATTTATTCTAGGGGTGAAAA+TGG | 0.342643 | 2.2:-73996802 | MS.gene002000:intron |
AAGATAATAAATCATCTGTC+TGG | 0.362077 | 2.2:-73996128 | MS.gene002000:CDS |
GCGACGCATTTATATTCTTA+AGG | 0.364246 | 2.2:-73996946 | MS.gene002000:intron |
AGTGGTCAATATTCATCTTC+GGG | 0.365481 | 2.2:-74002184 | MS.gene002000:intron |
CCTGTAGCACTTAAAGAATC+TGG | 0.366455 | 2.2:-73995245 | MS.gene002000:CDS |
GCTCGAGGCATCTATGAATC+AGG | 0.366491 | 2.2:-74002259 | MS.gene002000:CDS |
AGTGGTTAGCAAGTGGCGCC+TGG | 0.367329 | 2.2:+73997009 | None:intergenic |
TCCCATGGAGAAACTCTATC+TGG | 0.379411 | 2.2:+73995650 | None:intergenic |
CTTGTTTCGTTGGGTTGGCT+GGG | 0.393670 | 2.2:+73995592 | None:intergenic |
GCCGTGATCTCTTGTTTCGT+TGG | 0.393836 | 2.2:+73995582 | None:intergenic |
ACTGTACACCTTGGAGGTTC+AGG | 0.402087 | 2.2:+74001778 | None:intergenic |
CTCCTTTGTCAGGAAGGGTG+GGG | 0.406745 | 2.2:-73995133 | MS.gene002000:CDS |
AAGTGGTCAATATTCATCTT+CGG | 0.406745 | 2.2:-74002185 | MS.gene002000:CDS |
CCGTGATCTCTTGTTTCGTT+GGG | 0.408027 | 2.2:+73995583 | None:intergenic |
GGTTCAGGCAGAGGATCGTC+TGG | 0.408864 | 2.2:+74001793 | None:intergenic |
AAACAACGTTCCGGTGGAAA+TGG | 0.411637 | 2.2:+73996669 | None:intergenic |
CCATGTTGAGGGTCGCGATA+AGG | 0.418966 | 2.2:+73995401 | None:intergenic |
GAGAGCTCCGAGTTGGAGTC+AGG | 0.419221 | 2.2:-73996780 | MS.gene002000:CDS |
CTGAACCATCAAATGTTAAT+CGG | 0.420775 | 2.2:-73995064 | MS.gene002000:CDS |
CTGCAAACTGCTCCTTTGTC+AGG | 0.421100 | 2.2:-73995143 | MS.gene002000:CDS |
TACATTGACTTGTTAGAAGC+AGG | 0.423055 | 2.2:+73995308 | None:intergenic |
CCAGATTCTTTAAGTGCTAC+AGG | 0.424964 | 2.2:+73995245 | None:intergenic |
AAGAGACAAGGCACTGGAAA+TGG | 0.428342 | 2.2:-73995218 | MS.gene002000:CDS |
AATGTATTGGTCTAGTAGAT+TGG | 0.436725 | 2.2:-73995291 | MS.gene002000:CDS |
CTGAATCTTGGTGATGGATA+GGG | 0.438041 | 2.2:+73995371 | None:intergenic |
CTCTAAAATATTGTGTAAAG+TGG | 0.440981 | 2.2:-74002202 | MS.gene002000:CDS |
GCAGCCACCGTGGCAAGAAC+TGG | 0.442859 | 2.2:-74001543 | MS.gene002000:CDS |
CGAAATCACAAACTTTCTGT+TGG | 0.445985 | 2.2:-73996311 | MS.gene002000:CDS |
CATTTGATGGTTCAGAATGT+TGG | 0.446500 | 2.2:+73995072 | None:intergenic |
GAAGAGATGTTTGACATTGA+GGG | 0.446939 | 2.2:-73993501 | MS.gene002000:CDS |
ATCATGCCTGCGGTCTCCTC+AGG | 0.453007 | 2.2:-73995006 | MS.gene002000:CDS |
TGATAGGTCAGTTCCGTCCT+TGG | 0.453417 | 2.2:-73995108 | MS.gene002000:CDS |
CCCTCAAGGTCACATGGAAC+AGG | 0.455282 | 2.2:-74002551 | MS.gene002000:intron |
GTAATGTATCTCAGGTTCAA+TGG | 0.455705 | 2.2:-73995697 | MS.gene002000:intron |
GGGAAAGGTGGAGCGTCAAC+TGG | 0.457239 | 2.2:+73995422 | None:intergenic |
TGCTCCTTTGTCAGGAAGGG+TGG | 0.457606 | 2.2:-73995135 | MS.gene002000:CDS |
AAGATGATATGATGATGGTT+GGG | 0.459654 | 2.2:-73993428 | MS.gene002000:CDS |
GAAATCACAAACTTTCTGTT+GGG | 0.463689 | 2.2:-73996310 | MS.gene002000:CDS |
AGGCGCCACTTGCTAACCAC+TGG | 0.466079 | 2.2:-73997007 | MS.gene002000:CDS |
TTGTCACTCTTCCTCGTGAA+GGG | 0.467505 | 2.2:-74002591 | MS.gene002000:CDS |
CATGTTGAGGGTCGCGATAA+GGG | 0.471170 | 2.2:+73995402 | None:intergenic |
GAATTGTGGCATGCCTGTGC+TGG | 0.473261 | 2.2:-74002619 | MS.gene002000:CDS |
TCCTTTGTCAGGAAGGGTGG+GGG | 0.473321 | 2.2:-73995132 | MS.gene002000:CDS |
CCTGTTCCATGTGACCTTGA+GGG | 0.476786 | 2.2:+74002551 | None:intergenic |
TTGGGATGCGATTCAAAATG+AGG | 0.477303 | 2.2:-73996292 | MS.gene002000:CDS |
CGATTCAAAATGAGGTTTGA+GGG | 0.479357 | 2.2:-73996284 | MS.gene002000:CDS |
GGAAGAGATGTTTGACATTG+AGG | 0.479569 | 2.2:-73993502 | MS.gene002000:CDS |
TAATGTATCTCAGGTTCAAT+GGG | 0.483572 | 2.2:-73995696 | MS.gene002000:intron |
GCTCCTTTGTCAGGAAGGGT+GGG | 0.486960 | 2.2:-73995134 | MS.gene002000:CDS |
GATCTCTTGTTTCGTTGGGT+TGG | 0.487252 | 2.2:+73995587 | None:intergenic |
TACTTACAATAAACTCTGAC+CGG | 0.489576 | 2.2:+73996354 | None:intergenic |
GAAGAATCGGTCATTGTTGA+AGG | 0.493223 | 2.2:+73995548 | None:intergenic |
TAGGGGTCTCTTCCATGTTG+AGG | 0.493687 | 2.2:+73995389 | None:intergenic |
GCTGAATCTTGGTGATGGAT+AGG | 0.496211 | 2.2:+73995370 | None:intergenic |
AGGGGTCTCTTCCATGTTGA+GGG | 0.496601 | 2.2:+73995390 | None:intergenic |
AGTGACAAGGGGTCCAGCAC+AGG | 0.502780 | 2.2:+74002606 | None:intergenic |
CTTCTAACAAGTCAATGTAT+TGG | 0.505095 | 2.2:-73995304 | MS.gene002000:CDS |
GTTGCAGTAGAGCTGAATCT+TGG | 0.505751 | 2.2:+73995359 | None:intergenic |
AGGTTCAGTGGTACAATTGT+GGG | 0.507107 | 2.2:-73996156 | MS.gene002000:CDS |
CACCTTGGAGGTTCAGGCAG+AGG | 0.511883 | 2.2:+74001784 | None:intergenic |
GTTACCTTGCAGAGAAGAAT+CGG | 0.512172 | 2.2:+73995535 | None:intergenic |
GCGATTCAAAATGAGGTTTG+AGG | 0.512793 | 2.2:-73996285 | MS.gene002000:CDS |
GTGGTTAGCAAGTGGCGCCT+GGG | 0.519747 | 2.2:+73997010 | None:intergenic |
TCAGCTGTTACAAGCCGTGC+AGG | 0.520745 | 2.2:-74002900 | MS.gene002000:intron |
AGATGATTGTCTTCCACCAC+TGG | 0.522916 | 2.2:-74001680 | MS.gene002000:intron |
GAAGATGATATGATGATGGT+TGG | 0.523906 | 2.2:-73993429 | MS.gene002000:CDS |
GTCATTGTTGAAGGTAGAAT+AGG | 0.525173 | 2.2:+73995557 | None:intergenic |
TTCAGAATGTTGGTCAGACT+CGG | 0.525927 | 2.2:+73995082 | None:intergenic |
TTGGTCAGACTCGGCATCCA+AGG | 0.527366 | 2.2:+73995091 | None:intergenic |
GAATGAACTGTACACCTTGG+AGG | 0.532998 | 2.2:+74001772 | None:intergenic |
TCTAGTCACAGCATGCATCT+TGG | 0.534965 | 2.2:-73996715 | MS.gene002000:CDS |
AACTGCTCCTTTGTCAGGAA+GGG | 0.537873 | 2.2:-73995138 | MS.gene002000:CDS |
ATGCTTTATACAAGGAATTG+TGG | 0.544099 | 2.2:-74002633 | MS.gene002000:CDS |
ACCTGTTCCATGTGACCTTG+AGG | 0.544594 | 2.2:+74002550 | None:intergenic |
TGACTAGATATGACAGAAGA+TGG | 0.546076 | 2.2:+73996730 | None:intergenic |
AGATAATAAATCATCTGTCT+GGG | 0.549007 | 2.2:-73996127 | MS.gene002000:CDS |
AAACACAGAAAACAACGTTC+CGG | 0.549480 | 2.2:+73996660 | None:intergenic |
CTTGTCACTCTTCCTCGTGA+AGG | 0.552035 | 2.2:-74002592 | MS.gene002000:CDS |
GGAGAGAAGAGACAAGGCAC+TGG | 0.552498 | 2.2:-73995224 | MS.gene002000:CDS |
GACATTGAGGGCGAGCTCTG+TGG | 0.553894 | 2.2:-73993489 | MS.gene002000:CDS |
AACTAATGATGCTTTATACA+AGG | 0.555709 | 2.2:-74002641 | MS.gene002000:CDS |
GTTGGCTGGGAGTTTGCTGG+AGG | 0.557911 | 2.2:+73995605 | None:intergenic |
AAACTGCTCCTTTGTCAGGA+AGG | 0.559088 | 2.2:-73995139 | MS.gene002000:CDS |
CAGGTTCAGTGGTACAATTG+TGG | 0.559846 | 2.2:-73996157 | MS.gene002000:CDS |
GTCCAGATAGAGTTTCTCCA+TGG | 0.563529 | 2.2:-73995652 | MS.gene002000:CDS |
TGAATCTTGGTGATGGATAG+GGG | 0.566632 | 2.2:+73995372 | None:intergenic |
ATCAAATAATCTTACAGCCA+CGG | 0.567519 | 2.2:+73993399 | None:intergenic |
GTGACTCCTGAGGAGACCGC+AGG | 0.572855 | 2.2:+73995000 | None:intergenic |
GCATCTCATGCCATTTCCAC+CGG | 0.574440 | 2.2:-73996679 | MS.gene002000:CDS |
GTGATGAAGTACCTGAAAGA+AGG | 0.575293 | 2.2:-73996262 | MS.gene002000:intron |
AGATGATATGATGATGGTTG+GGG | 0.575551 | 2.2:-73993427 | MS.gene002000:CDS |
ATAAAGTTGCTAACCAGTGG+TGG | 0.576718 | 2.2:+74001667 | None:intergenic |
CCTTATCGCGACCCTCAACA+TGG | 0.577301 | 2.2:-73995401 | MS.gene002000:CDS |
ATCCTCTGCCTGAACCTCCA+AGG | 0.580105 | 2.2:-74001786 | MS.gene002000:CDS |
ACATTGACTTGTTAGAAGCA+GGG | 0.583442 | 2.2:+73995309 | None:intergenic |
GGCGCCACTTGCTAACCACT+GGG | 0.585156 | 2.2:-73997006 | MS.gene002000:CDS |
GAAAATGGAGAGCTCCGAGT+TGG | 0.587673 | 2.2:-73996787 | MS.gene002000:CDS |
CTCGAGGCATCTATGAATCA+GGG | 0.588536 | 2.2:-74002258 | MS.gene002000:CDS |
GCTTCTGACACTAGCACTCA+CGG | 0.590110 | 2.2:-74001730 | MS.gene002000:CDS |
CTGGTTGCAACTGATTTGCA+TGG | 0.590503 | 2.2:-74001524 | MS.gene002000:CDS |
CCCAACGAAACAAGAGATCA+CGG | 0.593547 | 2.2:-73995583 | MS.gene002000:CDS |
TGTCACTCTTCCTCGTGAAG+GGG | 0.594234 | 2.2:-74002590 | MS.gene002000:CDS |
CAATGAAGATGATATGATGA+TGG | 0.595334 | 2.2:-73993433 | MS.gene002000:CDS |
CCCGCTGAATACAGGTTCAG+TGG | 0.595738 | 2.2:-73996168 | MS.gene002000:intron |
CACAGAAAACAACGTTCCGG+TGG | 0.598297 | 2.2:+73996663 | None:intergenic |
TGAGGGTCGCGATAAGGGAA+AGG | 0.605416 | 2.2:+73995407 | None:intergenic |
TTAGAGGGCAGATTAAAGGA+AGG | 0.605910 | 2.2:+74002219 | None:intergenic |
TTACTTCCCTCAAGGTCACA+TGG | 0.605985 | 2.2:-74002557 | MS.gene002000:CDS |
TCCACCCAGTGGTTAGCAAG+TGG | 0.606265 | 2.2:+73997002 | None:intergenic |
TCAGCATCACAACTTACTGA+AGG | 0.608499 | 2.2:+73995032 | None:intergenic |
GAAATGAAACCGAACCTGCA+CGG | 0.608673 | 2.2:+74002886 | None:intergenic |
ATTGTTGAAGGTAGAATAGG+AGG | 0.609621 | 2.2:+73995560 | None:intergenic |
ACAAGTGGCTCCAATTCCCA+TGG | 0.609636 | 2.2:+73995635 | None:intergenic |
AAGGCACTGGAAATGGCTGT+AGG | 0.609978 | 2.2:-73995211 | MS.gene002000:CDS |
AATGAATGAACTGTACACCT+TGG | 0.617416 | 2.2:+74001769 | None:intergenic |
TTCACGAGGAAGAGTGACAA+GGG | 0.618268 | 2.2:+74002594 | None:intergenic |
TGAGCCTCCTGACTCCAACT+CGG | 0.618882 | 2.2:+73996773 | None:intergenic |
GTAGAGCTGAATCTTGGTGA+TGG | 0.621492 | 2.2:+73995365 | None:intergenic |
AAGTATTAACAAGTATCTTG+AGG | 0.629801 | 2.2:-73996336 | MS.gene002000:CDS |
GTTCAGGCAGAGGATCGTCT+GGG | 0.636939 | 2.2:+74001794 | None:intergenic |
TGTCTGCTTTGTGACTCCTG+AGG | 0.636995 | 2.2:+73994990 | None:intergenic |
TCCAGATAGAGTTTCTCCAT+GGG | 0.639065 | 2.2:-73995651 | MS.gene002000:CDS |
AGAGTGTATTACTTCCCTCA+AGG | 0.640899 | 2.2:-74002565 | MS.gene002000:CDS |
CTTCACGAGGAAGAGTGACA+AGG | 0.643168 | 2.2:+74002593 | None:intergenic |
GGGTCGCGATAAGGGAAAGG+TGG | 0.643453 | 2.2:+73995410 | None:intergenic |
GTTGCAACCAGTTCTTGCCA+CGG | 0.644013 | 2.2:+74001536 | None:intergenic |
ACAAATAAGAAGCTGCACAA+AGG | 0.645385 | 2.2:-73994970 | MS.gene002000:intron |
CTTGTTGGTTTAGCAAAGTG+AGG | 0.646960 | 2.2:-74001824 | MS.gene002000:intron |
AGCTCCGAGTTGGAGTCAGG+AGG | 0.653971 | 2.2:-73996777 | MS.gene002000:CDS |
TCTGGACGCAAAATTGATGA+CGG | 0.655588 | 2.2:+73995668 | None:intergenic |
TCAGACTCGGCATCCAAGGA+CGG | 0.657409 | 2.2:+73995095 | None:intergenic |
GAATCTGGAGAGAAGAGACA+AGG | 0.663528 | 2.2:-73995230 | MS.gene002000:CDS |
ATGACCGATTCTTCTCTGCA+AGG | 0.665319 | 2.2:-73995539 | MS.gene002000:intron |
CTGTCTGGGCTGATTCTGAG+TGG | 0.666330 | 2.2:-73996113 | MS.gene002000:CDS |
TACACTCTCTCCCCTTCACG+AGG | 0.668420 | 2.2:+74002580 | None:intergenic |
GCAACCAGTTCTTGCCACGG+TGG | 0.672804 | 2.2:+74001539 | None:intergenic |
TGATGGTTGGGGATGATCCG+TGG | 0.673950 | 2.2:-73993416 | MS.gene002000:CDS |
GCTGGAGGAGTAGATACAAG+TGG | 0.679626 | 2.2:+73995620 | None:intergenic |
ATGCTGACAAATCATGCCTG+CGG | 0.688919 | 2.2:-73995016 | MS.gene002000:CDS |
GGAAATGGCATGAGATGCAG+TGG | 0.688967 | 2.2:+73996684 | None:intergenic |
CTGATTTGCATGGAAATGAG+TGG | 0.690536 | 2.2:-74001514 | MS.gene002000:CDS |
AGTAATTTACAGGACAACCC+AGG | 0.694391 | 2.2:-73997027 | MS.gene002000:intron |
GCCACTTGCTAACCACTGGG+TGG | 0.705306 | 2.2:-73997003 | MS.gene002000:CDS |
GACAAAGACACTCCACCCAG+TGG | 0.718661 | 2.2:+73996991 | None:intergenic |
TCACGAGGAAGAGTGACAAG+GGG | 0.718761 | 2.2:+74002595 | None:intergenic |
ACATGACTCAGCAGCCACCG+TGG | 0.724404 | 2.2:-74001553 | MS.gene002000:CDS |
TCTGACACTAGCACTCACGG+AGG | 0.860330 | 2.2:-74001727 | MS.gene002000:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 73993414 | 74002940 | 73993414 | ID=MS.gene002000 |
chr2.2 | mRNA | 73993414 | 74002940 | 73993414 | ID=MS.gene002000.t1;Parent=MS.gene002000 |
chr2.2 | exon | 74002901 | 74002940 | 74002901 | ID=MS.gene002000.t1.exon1;Parent=MS.gene002000.t1 |
chr2.2 | CDS | 74002901 | 74002940 | 74002901 | ID=cds.MS.gene002000.t1;Parent=MS.gene002000.t1 |
chr2.2 | exon | 74002552 | 74002667 | 74002552 | ID=MS.gene002000.t1.exon2;Parent=MS.gene002000.t1 |
chr2.2 | CDS | 74002552 | 74002667 | 74002552 | ID=cds.MS.gene002000.t1;Parent=MS.gene002000.t1 |
chr2.2 | exon | 74002185 | 74002280 | 74002185 | ID=MS.gene002000.t1.exon3;Parent=MS.gene002000.t1 |
chr2.2 | CDS | 74002185 | 74002280 | 74002185 | ID=cds.MS.gene002000.t1;Parent=MS.gene002000.t1 |
chr2.2 | exon | 74002004 | 74002060 | 74002004 | ID=MS.gene002000.t1.exon4;Parent=MS.gene002000.t1 |
chr2.2 | CDS | 74002004 | 74002060 | 74002004 | ID=cds.MS.gene002000.t1;Parent=MS.gene002000.t1 |
chr2.2 | exon | 74001681 | 74001833 | 74001681 | ID=MS.gene002000.t1.exon5;Parent=MS.gene002000.t1 |
chr2.2 | CDS | 74001681 | 74001833 | 74001681 | ID=cds.MS.gene002000.t1;Parent=MS.gene002000.t1 |
chr2.2 | exon | 74001492 | 74001576 | 74001492 | ID=MS.gene002000.t1.exon6;Parent=MS.gene002000.t1 |
chr2.2 | CDS | 74001492 | 74001576 | 74001492 | ID=cds.MS.gene002000.t1;Parent=MS.gene002000.t1 |
chr2.2 | exon | 73996947 | 73997037 | 73996947 | ID=MS.gene002000.t1.exon7;Parent=MS.gene002000.t1 |
chr2.2 | CDS | 73996947 | 73997037 | 73996947 | ID=cds.MS.gene002000.t1;Parent=MS.gene002000.t1 |
chr2.2 | exon | 73996649 | 73996813 | 73996649 | ID=MS.gene002000.t1.exon8;Parent=MS.gene002000.t1 |
chr2.2 | CDS | 73996649 | 73996813 | 73996649 | ID=cds.MS.gene002000.t1;Parent=MS.gene002000.t1 |
chr2.2 | exon | 73996263 | 73996382 | 73996263 | ID=MS.gene002000.t1.exon9;Parent=MS.gene002000.t1 |
chr2.2 | CDS | 73996263 | 73996382 | 73996263 | ID=cds.MS.gene002000.t1;Parent=MS.gene002000.t1 |
chr2.2 | exon | 73996101 | 73996176 | 73996101 | ID=MS.gene002000.t1.exon10;Parent=MS.gene002000.t1 |
chr2.2 | CDS | 73996101 | 73996176 | 73996101 | ID=cds.MS.gene002000.t1;Parent=MS.gene002000.t1 |
chr2.2 | exon | 73995540 | 73995705 | 73995540 | ID=MS.gene002000.t1.exon11;Parent=MS.gene002000.t1 |
chr2.2 | CDS | 73995540 | 73995705 | 73995540 | ID=cds.MS.gene002000.t1;Parent=MS.gene002000.t1 |
chr2.2 | exon | 73994971 | 73995458 | 73994971 | ID=MS.gene002000.t1.exon12;Parent=MS.gene002000.t1 |
chr2.2 | CDS | 73994971 | 73995458 | 73994971 | ID=cds.MS.gene002000.t1;Parent=MS.gene002000.t1 |
chr2.2 | exon | 73993414 | 73993529 | 73993414 | ID=MS.gene002000.t1.exon13;Parent=MS.gene002000.t1 |
chr2.2 | CDS | 73993414 | 73993529 | 73993414 | ID=cds.MS.gene002000.t1;Parent=MS.gene002000.t1 |
Gene Sequence |
Protein sequence |