AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002042

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002042.t1 MTR_2g006150 91.506 518 10 9 1 515 1 487 0.0 917
MS.gene002042.t1 MTR_2g006150 93.939 462 7 8 1 459 1 444 0.0 846
MS.gene002042.t1 MTR_5g039600 92.045 88 6 1 127 213 61 148 2.91e-49 175
MS.gene002042.t1 MTR_4g108370 65.152 132 34 4 73 201 44 166 2.65e-43 159
MS.gene002042.t1 MTR_7g028160 52.632 152 62 3 104 251 21 166 3.80e-38 141
MS.gene002042.t1 MTR_1g114380 80.488 82 13 1 123 204 27 105 6.53e-38 140
MS.gene002042.t1 MTR_1g101810 56.303 119 48 1 102 220 38 152 1.55e-36 138
MS.gene002042.t1 MTR_1g101810 56.303 119 48 1 102 220 68 182 3.59e-36 138
MS.gene002042.t1 MTR_1g038650 75.000 84 18 1 117 200 20 100 1.51e-35 133
MS.gene002042.t1 MTR_8g033070 78.947 76 16 0 129 204 77 152 2.60e-35 135
MS.gene002042.t1 MTR_1g063870 80.282 71 14 0 124 194 41 111 1.15e-34 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002042.t1 AT1G58100 46.387 429 132 18 69 472 9 364 3.19e-80 256
MS.gene002042.t1 AT1G35560 43.452 336 93 10 129 458 52 296 1.89e-60 202
MS.gene002042.t1 AT1G58100 41.026 429 131 19 69 472 9 340 9.16e-57 194
MS.gene002042.t1 AT1G72010 40.476 294 109 9 121 394 52 299 3.02e-48 171
MS.gene002042.t1 AT1G69690 58.599 157 38 3 127 271 46 187 1.54e-41 152
MS.gene002042.t1 AT5G23280 77.108 83 16 1 122 204 32 111 5.84e-37 137
MS.gene002042.t1 AT2G45680 57.600 125 41 3 86 209 39 152 4.73e-36 137
MS.gene002042.t1 AT5G08330 68.750 96 27 1 107 202 9 101 1.14e-35 133
MS.gene002042.t1 AT3G27010 53.226 124 42 2 70 193 32 139 6.71e-34 130
MS.gene002042.t1 AT3G27010 53.226 124 42 2 70 193 32 139 6.71e-34 130
MS.gene002042.t1 AT5G51910 78.205 78 16 1 128 204 52 129 9.29e-34 129
MS.gene002042.t1 AT5G51910 78.205 78 16 1 128 204 52 129 9.29e-34 129
MS.gene002042.t1 AT2G37000 80.000 60 12 0 132 191 43 102 3.92e-27 108
MS.gene002042.t1 AT5G41030 51.546 97 35 1 129 225 65 149 1.89e-26 108
MS.gene002042.t1 AT3G45150 61.905 63 24 0 129 191 14 76 1.33e-21 92.0

Find 148 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGCCATCACCTTTCATTA+TGG 0.235639 2.3:+75837950 MS.gene002042:CDS
CTTGTTGTTGGTGGTGGGGA+TGG 0.241546 2.3:-75837872 None:intergenic
AGGTTCAATGTTCCAGCTTC+TGG 0.242129 2.3:+75839061 MS.gene002042:CDS
GTTTGAAGAAGGTTGAATAT+TGG 0.260266 2.3:-75837982 None:intergenic
TCATCAACAACAGGATGATA+TGG 0.263411 2.3:+75838748 MS.gene002042:CDS
TTGAAGAAAATGGTTGAATT+TGG 0.273936 2.3:-75838139 None:intergenic
TTGTTGTTGGTGGTGGGGAT+GGG 0.292871 2.3:-75837871 None:intergenic
TTCCAGTTGACCAGAGAATT+AGG 0.308053 2.3:+75838281 MS.gene002042:CDS
GATAGTCATTGTGAGGTATT+AGG 0.316778 2.3:-75839343 None:intergenic
GACGGTGGTGGAGGAGGTGG+TGG 0.325996 2.3:+75838779 MS.gene002042:CDS
AATTTGGTTGTTGTTGTTGT+TGG 0.326907 2.3:-75838123 None:intergenic
GACTGAACATGAGGTGTAAA+AGG 0.331793 2.3:-75838983 None:intergenic
ATGATTCTTGTTGTTGGTGG+TGG 0.333014 2.3:-75837878 None:intergenic
CGGGGAGTGGAAGTACAATT+TGG 0.342926 2.3:+75838891 MS.gene002042:CDS
TACCAACACGCGCCTCTGTT+AGG 0.343048 2.3:+75838524 MS.gene002042:CDS
TCTTCTCCACTCTCATCATT+AGG 0.347346 2.3:-75839316 None:intergenic
TGTTGTTGGTGGTGGGGATG+GGG 0.348885 2.3:-75837870 None:intergenic
AGGCCATCACCTTTCATTAT+GGG 0.359459 2.3:+75837951 MS.gene002042:CDS
GTGGGGATGGGGATGAATAT+TGG 0.363141 2.3:-75837859 None:intergenic
GAAGGTGACGGTGGTGGAGG+AGG 0.367290 2.3:+75838773 MS.gene002042:CDS
GGCTGGGATTGTTCCGGTGC+CGG 0.367521 2.3:-75838372 None:intergenic
CTGTCCTTGGTGGATCGTTT+TGG 0.369093 2.3:-75838194 None:intergenic
GTTGTTGCTGTTGCTGTTGT+TGG 0.372670 2.3:-75838568 None:intergenic
TGGACGTGGTGGTTTACAAT+TGG 0.382459 2.3:+75839111 MS.gene002042:CDS
TGATTCTTGTTGTTGGTGGT+GGG 0.388715 2.3:-75837877 None:intergenic
GTATCAACCATCACAGCATT+TGG 0.390115 2.3:+75839141 MS.gene002042:CDS
GCGGTTGAAGTTGAAGAAAA+TGG 0.393103 2.3:-75838149 None:intergenic
GGCCTAATTCTCTGGTCAAC+TGG 0.396838 2.3:-75838283 None:intergenic
GTAGCCCACATGGCTGTTGC+CGG 0.398412 2.3:-75838866 None:intergenic
GGATTTGTGGCCTAATTCTC+TGG 0.401966 2.3:-75838291 None:intergenic
GATTCTTGTTGTTGGTGGTG+GGG 0.404293 2.3:-75837876 None:intergenic
GGTGGTGGAGGAGGTGGTGG+TGG 0.404546 2.3:+75838782 MS.gene002042:CDS
GTGAGGATGATTCTTGTTGT+TGG 0.411900 2.3:-75837884 None:intergenic
TTGTTTCACCATCGGATTTG+TGG 0.412133 2.3:-75838304 None:intergenic
CCACTCTCATCATTAGGTTG+AGG 0.418843 2.3:-75839310 None:intergenic
GGTGACGGTGGTGGAGGAGG+TGG 0.419720 2.3:+75838776 MS.gene002042:CDS
TATCAACCATCACAGCATTT+GGG 0.420346 2.3:+75839142 MS.gene002042:CDS
GGACGTGGTGGTTTACAATT+GGG 0.421245 2.3:+75839112 MS.gene002042:CDS
TCAACAACATTCAATGTCAT+TGG 0.422221 2.3:+75839267 MS.gene002042:CDS
TTGTTGTTGTTGGATACATC+TGG 0.423257 2.3:-75838113 None:intergenic
GACGTTGAGCGTTGAGAAAT+TGG 0.424642 2.3:-75838393 None:intergenic
AAGAGTTGTTAACGTTGAAA+TGG 0.427409 2.3:-75839228 None:intergenic
GAGGGAGAAGAGTTTGAAGA+AGG 0.435751 2.3:-75837993 None:intergenic
GGTGGTGGTGTTGAATTTCA+AGG 0.437658 2.3:+75839088 MS.gene002042:CDS
CAGATCTGGTGGCAATTGCC+AGG 0.437859 2.3:-75838079 None:intergenic
TCATCATTAGGTTGAGGTTG+AGG 0.438959 2.3:-75839304 None:intergenic
CTGATGAACGCTGATCAAAT+TGG 0.440741 2.3:+75838593 MS.gene002042:CDS
GGGATGGGGATGAATATTGG+TGG 0.440791 2.3:-75837856 None:intergenic
GAAATTGGCTGGGATTGTTC+CGG 0.446496 2.3:-75838378 None:intergenic
GGCGAAGGTGACGGTGGTGG+AGG 0.448389 2.3:+75838770 MS.gene002042:CDS
GGCTGTATCTGATTCCAACT+TGG 0.449042 2.3:+75839168 MS.gene002042:CDS
ACAGCCATGTGGGCTACAGC+GGG 0.455998 2.3:+75838872 MS.gene002042:CDS
ACCAACACGCGCCTCTGTTA+GGG 0.456330 2.3:+75838525 MS.gene002042:CDS
GGAGCTTCTTCTTCTTCTGT+AGG 0.458812 2.3:+75838803 MS.gene002042:CDS
GGTGATGGCCTTCCATCAAA+AGG 0.462353 2.3:-75837939 None:intergenic
AATGTTCCAGCTTCTGGTGG+TGG 0.463360 2.3:+75839067 MS.gene002042:CDS
CAAAACAAATCATCAACAAC+AGG 0.467153 2.3:+75838739 MS.gene002042:CDS
CTCAGTTACATTTCATGCCA+AGG 0.474185 2.3:+75839041 MS.gene002042:CDS
CCATTCAATTGTTTCACCAT+CGG 0.476071 2.3:-75838312 None:intergenic
TTGAGCGTTGAGAAATTGGC+TGG 0.476634 2.3:-75838389 None:intergenic
CCAGCTTCTGGTGGTGGTGG+TGG 0.477601 2.3:+75839073 MS.gene002042:CDS
ACACCTCATTGATGCTTCCC+TGG 0.479655 2.3:+75838061 MS.gene002042:CDS
GCTTCTTCAACAAGCGGAGC+CGG 0.481221 2.3:+75838334 MS.gene002042:CDS
TCGACCGTCAAATATGTTAC+CGG 0.485929 2.3:+75838847 MS.gene002042:CDS
ATCATCGCTGCCACCGGCAC+CGG 0.486326 2.3:+75838359 MS.gene002042:CDS
ATGGGCGAAGGTGACGGTGG+TGG 0.487166 2.3:+75838767 MS.gene002042:CDS
AGGATGATTCTTGTTGTTGG+TGG 0.493938 2.3:-75837881 None:intergenic
ATGTGGGCTACAGCGGGGAG+TGG 0.494234 2.3:+75838878 MS.gene002042:CDS
GCTGTATCTGATTCCAACTT+GGG 0.503244 2.3:+75839169 MS.gene002042:CDS
AGGATTTGCAACCGCGGTGA+CGG 0.503756 2.3:-75838171 None:intergenic
ACGAGAATTACATGAGAAAA+CGG 0.506668 2.3:+75838630 MS.gene002042:CDS
CTTAATGCTTATACAAGAGC+TGG 0.507717 2.3:+75839205 MS.gene002042:CDS
CATGTTCAGTCTCAAAATCA+AGG 0.508213 2.3:+75838995 MS.gene002042:CDS
AGCAGCAAACATACCCAAGT+TGG 0.510675 2.3:-75839182 None:intergenic
ACCATCACAGCATTTGGGAT+TGG 0.511721 2.3:+75839147 MS.gene002042:CDS
GTTCCAGCTTCTGGTGGTGG+TGG 0.513092 2.3:+75839070 MS.gene002042:CDS
CCGGCGATCATCGCTGCCAC+CGG 0.513461 2.3:+75838353 MS.gene002042:CDS
CAAAAGTTGACGGCCGTGGC+CGG 0.517328 2.3:+75838222 MS.gene002042:CDS
CATCAACAACAGGATGATAT+GGG 0.517879 2.3:+75838749 MS.gene002042:CDS
CCGGTGGCAGCGATGATCGC+CGG 0.518014 2.3:-75838353 None:intergenic
CAAAATGAAAGTGGCGGTGA+TGG 0.520198 2.3:+75838689 MS.gene002042:CDS
GTTGCTGTTGCTGTTGTTGG+TGG 0.522829 2.3:-75838565 None:intergenic
TGGTACGCAGCTTCTTCGTA+AGG 0.525067 2.3:-75838506 None:intergenic
TTCAATGTTCCAGCTTCTGG+TGG 0.527514 2.3:+75839064 MS.gene002042:CDS
CCGATGGTGAAACAATTGAA+TGG 0.532182 2.3:+75838312 MS.gene002042:CDS
GCATTCGAATTCTCCGGCCA+CGG 0.535337 2.3:-75838235 None:intergenic
TGCTGATGATGAGAATTTGA+AGG 0.536098 2.3:-75837906 None:intergenic
TCGCCGGCATTCGAATTCTC+CGG 0.537835 2.3:-75838241 None:intergenic
AACAACAATCAAAATGAAAG+TGG 0.537872 2.3:+75838680 MS.gene002042:CDS
CACACAAAAGTTGACGGCCG+TGG 0.538934 2.3:+75838218 MS.gene002042:CDS
TGGAAGAGGAGGTTCAGATC+TGG 0.540562 2.3:-75838093 None:intergenic
TGTTGTTGGTGGTGTTGATG+AGG 0.542903 2.3:-75838554 None:intergenic
ACAGTGTAGAGCCGCTGCTA+CGG 0.544103 2.3:-75838421 None:intergenic
AGAAGGTTGAATATTGGAGA+TGG 0.548864 2.3:-75837976 None:intergenic
GACAGGCACACAAAAGTTGA+CGG 0.553080 2.3:+75838212 MS.gene002042:CDS
TTGTTGGATACATCTGGAAG+AGG 0.554700 2.3:-75838107 None:intergenic
ACTCCCCGCTGTAGCCCACA+TGG 0.560090 2.3:-75838876 None:intergenic
GTGATGGCCTTCCATCAAAA+GGG 0.560570 2.3:-75837938 None:intergenic
AACAGCCATGTGGGCTACAG+CGG 0.560758 2.3:+75838871 MS.gene002042:CDS
GTTGCCGGTAACATATTTGA+CGG 0.564703 2.3:-75838851 None:intergenic
CAAAACGATCCACCAAGGAC+AGG 0.572544 2.3:+75838195 MS.gene002042:CDS
GATGATATGGGCGAAGGTGA+CGG 0.576236 2.3:+75838761 MS.gene002042:CDS
TGGGATTGTTCCGGTGCCGG+TGG 0.577716 2.3:-75838369 None:intergenic
ATTTGCAACCGCGGTGACGG+CGG 0.577827 2.3:-75838168 None:intergenic
GTTGAATTTCAAGGTGGACG+TGG 0.582295 2.3:+75839097 MS.gene002042:CDS
ACTCTTGCTGCACATGTCGC+CGG 0.582995 2.3:-75838257 None:intergenic
GTTGCAGCACCACCACTCAC+TGG 0.586367 2.3:-75838920 None:intergenic
ACCCTAACAGAGGCGCGTGT+TGG 0.587028 2.3:-75838526 None:intergenic
TTCTCATCATCAGCAGCTTG+TGG 0.593589 2.3:+75837914 MS.gene002042:CDS
TGGCCGGAGAATTCGAATGC+CGG 0.599117 2.3:+75838238 MS.gene002042:CDS
GAGATGGAGCCCATAATGAA+AGG 0.601517 2.3:-75837960 None:intergenic
GAGCCCATAATGAAAGGTGA+TGG 0.605278 2.3:-75837954 None:intergenic
TTGGATACATCTGGAAGAGG+AGG 0.605386 2.3:-75838104 None:intergenic
TGAATGGCTTCTTCAACAAG+CGG 0.607294 2.3:+75838328 MS.gene002042:CDS
ATGATGAGAATTTGAAGGTG+AGG 0.608155 2.3:-75837901 None:intergenic
GCCAATCCCAAATGCTGTGA+TGG 0.613902 2.3:-75839148 None:intergenic
GAAGCTGGAACATTGAACCT+TGG 0.618817 2.3:-75839058 None:intergenic
GGCATGAAATGTAACTGAGA+CGG 0.621928 2.3:-75839037 None:intergenic
GAGTGGAAGTACAATTTGGA+TGG 0.623430 2.3:+75838895 MS.gene002042:CDS
CAAAACAACAAGCAGAAGAG+AGG 0.623869 2.3:+75837831 MS.gene002042:CDS
GATATGGGCGAAGGTGACGG+TGG 0.625298 2.3:+75838764 MS.gene002042:CDS
AGATCTGGTGGCAATTGCCA+GGG 0.625421 2.3:-75838078 None:intergenic
CCTCAACCTAATGATGAGAG+TGG 0.625980 2.3:+75839310 MS.gene002042:CDS
CAACAGGATGATATGGGCGA+AGG 0.628122 2.3:+75838755 MS.gene002042:CDS
AACTTCAACCGCCGTCACCG+CGG 0.629301 2.3:+75838160 MS.gene002042:CDS
GAAAGTGGCGGTGATGGTGA+TGG 0.632003 2.3:+75838695 MS.gene002042:CDS
AAGAGGAGGTTCAGATCTGG+TGG 0.633145 2.3:-75838090 None:intergenic
AACGTCTCACTCCGTAGCAG+CGG 0.639266 2.3:+75838410 MS.gene002042:CDS
TGAGCGTTGAGAAATTGGCT+GGG 0.640396 2.3:-75838388 None:intergenic
GAATTAGGCCACAAATCCGA+TGG 0.643115 2.3:+75838296 MS.gene002042:CDS
AGCATCAATGAGGTGTTGAG+TGG 0.643841 2.3:-75838054 None:intergenic
CTGAGAGGAGCTGATTTCGA+CGG 0.644392 2.3:-75838452 None:intergenic
AACAATCAAAATGAAAGTGG+CGG 0.649002 2.3:+75838683 MS.gene002042:CDS
GCATCAATGAGGTGTTGAGT+GGG 0.650961 2.3:-75838053 None:intergenic
GTTACCGGCAACAGCCATGT+GGG 0.654057 2.3:+75838862 MS.gene002042:CDS
TGTTACCGGCAACAGCCATG+TGG 0.658913 2.3:+75838861 MS.gene002042:CDS
GGTAGTAGATAGTCATTGTG+AGG 0.659915 2.3:-75839350 None:intergenic
GAATTTCAAGGTGGACGTGG+TGG 0.660159 2.3:+75839100 MS.gene002042:CDS
TCCTCCAAAACGATCCACCA+AGG 0.665860 2.3:+75838190 MS.gene002042:CDS
CAGCCATGTGGGCTACAGCG+GGG 0.667527 2.3:+75838873 MS.gene002042:CDS
AGAGGAGCTGATTTCGACGG+CGG 0.670392 2.3:-75838449 None:intergenic
AGACACAGACACAAAACATG+TGG 0.683636 2.3:+75838960 MS.gene002042:CDS
TTGCCAGGGAAGCATCAATG+AGG 0.690178 2.3:-75838064 None:intergenic
ATTTGGATGGTACCAGTGAG+TGG 0.695345 2.3:+75838908 MS.gene002042:CDS
TGGATGGTACCAGTGAGTGG+TGG 0.715883 2.3:+75838911 MS.gene002042:CDS
TGAGGATGAAACCCTAACAG+AGG 0.720008 2.3:-75838536 None:intergenic
AGCGCGCTATGAAAACTGAG+AGG 0.721312 2.3:-75838467 None:intergenic
GGTGGTGTTGAATTTCAAGG+TGG 0.744371 2.3:+75839091 MS.gene002042:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATTTGTTTTGAAACTTT+TGG - chr2.3:75838732-75838751 None:intergenic 20.0%
!!! TGATTTGTTTTGAAACTTTT+GGG - chr2.3:75838731-75838750 None:intergenic 20.0%
! AACAACAATCAAAATGAAAG+TGG + chr2.3:75838680-75838699 MS.gene002042:CDS 25.0%
! TTGAAGAAAATGGTTGAATT+TGG - chr2.3:75838142-75838161 None:intergenic 25.0%
AACAATCAAAATGAAAGTGG+CGG + chr2.3:75838683-75838702 MS.gene002042:CDS 30.0%
AAGAGTTGTTAACGTTGAAA+TGG - chr2.3:75839231-75839250 None:intergenic 30.0%
ACGAGAATTACATGAGAAAA+CGG + chr2.3:75838630-75838649 MS.gene002042:CDS 30.0%
CAAAACAAATCATCAACAAC+AGG + chr2.3:75838739-75838758 MS.gene002042:CDS 30.0%
GTTTGAAGAAGGTTGAATAT+TGG - chr2.3:75837985-75838004 None:intergenic 30.0%
TCAACAACATTCAATGTCAT+TGG + chr2.3:75839267-75839286 MS.gene002042:CDS 30.0%
TGAAGAAGAAGAAGAAGAAT+TGG - chr2.3:75838018-75838037 None:intergenic 30.0%
! AATTTGGTTGTTGTTGTTGT+TGG - chr2.3:75838126-75838145 None:intergenic 30.0%
! TCTGTAGGTAATTCTTTTTC+TGG + chr2.3:75838818-75838837 MS.gene002042:CDS 30.0%
AGAAGAAGAAGAAGAATTGG+AGG - chr2.3:75838015-75838034 None:intergenic 35.0%
AGAAGGTTGAATATTGGAGA+TGG - chr2.3:75837979-75837998 None:intergenic 35.0%
ATGATGAGAATTTGAAGGTG+AGG - chr2.3:75837904-75837923 None:intergenic 35.0%
CATCAACAACAGGATGATAT+GGG + chr2.3:75838749-75838768 MS.gene002042:CDS 35.0%
CATGTTCAGTCTCAAAATCA+AGG + chr2.3:75838995-75839014 MS.gene002042:CDS 35.0%
CCATTCAATTGTTTCACCAT+CGG - chr2.3:75838315-75838334 None:intergenic 35.0%
CTTAATGCTTATACAAGAGC+TGG + chr2.3:75839205-75839224 MS.gene002042:CDS 35.0%
GAAGAAGAAGAAGAATTGGA+GGG - chr2.3:75838014-75838033 None:intergenic 35.0%
TATCAACCATCACAGCATTT+GGG + chr2.3:75839142-75839161 MS.gene002042:CDS 35.0%
TCATCAACAACAGGATGATA+TGG + chr2.3:75838748-75838767 MS.gene002042:CDS 35.0%
! TGCTGATGATGAGAATTTGA+AGG - chr2.3:75837909-75837928 None:intergenic 35.0%
! TTGTTGTTGTTGGATACATC+TGG - chr2.3:75838116-75838135 None:intergenic 35.0%
!!! TGATTTTGAGACTGAACATG+AGG - chr2.3:75838995-75839014 None:intergenic 35.0%
AAGGCCATCACCTTTCATTA+TGG + chr2.3:75837950-75837969 MS.gene002042:CDS 40.0%
AGACACAGACACAAAACATG+TGG + chr2.3:75838960-75838979 MS.gene002042:CDS 40.0%
AGGCCATCACCTTTCATTAT+GGG + chr2.3:75837951-75837970 MS.gene002042:CDS 40.0%
CAAAACAACAAGCAGAAGAG+AGG + chr2.3:75837831-75837850 MS.gene002042:CDS 40.0%
CCGATGGTGAAACAATTGAA+TGG + chr2.3:75838312-75838331 MS.gene002042:CDS 40.0%
CTCAGTTACATTTCATGCCA+AGG + chr2.3:75839041-75839060 MS.gene002042:CDS 40.0%
CTGATGAACGCTGATCAAAT+TGG + chr2.3:75838593-75838612 MS.gene002042:CDS 40.0%
GACTGAACATGAGGTGTAAA+AGG - chr2.3:75838986-75839005 None:intergenic 40.0%
GCGGTTGAAGTTGAAGAAAA+TGG - chr2.3:75838152-75838171 None:intergenic 40.0%
GCTGTATCTGATTCCAACTT+GGG + chr2.3:75839169-75839188 MS.gene002042:CDS 40.0%
GGCATGAAATGTAACTGAGA+CGG - chr2.3:75839040-75839059 None:intergenic 40.0%
GTATCAACCATCACAGCATT+TGG + chr2.3:75839141-75839160 MS.gene002042:CDS 40.0%
GTTGCCGGTAACATATTTGA+CGG - chr2.3:75838854-75838873 None:intergenic 40.0%
TCGACCGTCAAATATGTTAC+CGG + chr2.3:75838847-75838866 MS.gene002042:CDS 40.0%
TCTTCTCCACTCTCATCATT+AGG - chr2.3:75839319-75839338 None:intergenic 40.0%
TGAATGGCTTCTTCAACAAG+CGG + chr2.3:75838328-75838347 MS.gene002042:CDS 40.0%
TTCCAGTTGACCAGAGAATT+AGG + chr2.3:75838281-75838300 MS.gene002042:CDS 40.0%
TTGTTGGATACATCTGGAAG+AGG - chr2.3:75838110-75838129 None:intergenic 40.0%
TTGTTTCACCATCGGATTTG+TGG - chr2.3:75838307-75838326 None:intergenic 40.0%
! GAGTGGAAGTACAATTTGGA+TGG + chr2.3:75838895-75838914 MS.gene002042:CDS 40.0%
! GTGAGGATGATTCTTGTTGT+TGG - chr2.3:75837887-75837906 None:intergenic 40.0%
!! AGGATGATTCTTGTTGTTGG+TGG - chr2.3:75837884-75837903 None:intergenic 40.0%
!! ATGATTCTTGTTGTTGGTGG+TGG - chr2.3:75837881-75837900 None:intergenic 40.0%
!! TCATCATTAGGTTGAGGTTG+AGG - chr2.3:75839307-75839326 None:intergenic 40.0%
!! TGATTCTTGTTGTTGGTGGT+GGG - chr2.3:75837880-75837899 None:intergenic 40.0%
AGCAGCAAACATACCCAAGT+TGG - chr2.3:75839185-75839204 None:intergenic 45.0%
AGGTTCAATGTTCCAGCTTC+TGG + chr2.3:75839061-75839080 MS.gene002042:CDS 45.0%
ATTTGGATGGTACCAGTGAG+TGG + chr2.3:75838908-75838927 MS.gene002042:CDS 45.0%
CAAAATGAAAGTGGCGGTGA+TGG + chr2.3:75838689-75838708 MS.gene002042:CDS 45.0%
CCTCAACCTAATGATGAGAG+TGG + chr2.3:75839310-75839329 MS.gene002042:CDS 45.0%
GAAATTGGCTGGGATTGTTC+CGG - chr2.3:75838381-75838400 None:intergenic 45.0%
GAAGCTGGAACATTGAACCT+TGG - chr2.3:75839061-75839080 None:intergenic 45.0%
GAATTAGGCCACAAATCCGA+TGG + chr2.3:75838296-75838315 MS.gene002042:CDS 45.0%
GACAGGCACACAAAAGTTGA+CGG + chr2.3:75838212-75838231 MS.gene002042:CDS 45.0%
GAGATGGAGCCCATAATGAA+AGG - chr2.3:75837963-75837982 None:intergenic 45.0%
GAGCCCATAATGAAAGGTGA+TGG - chr2.3:75837957-75837976 None:intergenic 45.0%
GAGGGAGAAGAGTTTGAAGA+AGG - chr2.3:75837996-75838015 None:intergenic 45.0%
GGACGTGGTGGTTTACAATT+GGG + chr2.3:75839112-75839131 MS.gene002042:CDS 45.0%
GGAGCTTCTTCTTCTTCTGT+AGG + chr2.3:75838803-75838822 MS.gene002042:CDS 45.0%
GGATTTGTGGCCTAATTCTC+TGG - chr2.3:75838294-75838313 None:intergenic 45.0%
GGCTGTATCTGATTCCAACT+TGG + chr2.3:75839168-75839187 MS.gene002042:CDS 45.0%
GTGATGGCCTTCCATCAAAA+GGG - chr2.3:75837941-75837960 None:intergenic 45.0%
GTTGAATTTCAAGGTGGACG+TGG + chr2.3:75839097-75839116 MS.gene002042:CDS 45.0%
TGAGGATGAAACCCTAACAG+AGG - chr2.3:75838539-75838558 None:intergenic 45.0%
TGGACGTGGTGGTTTACAAT+TGG + chr2.3:75839111-75839130 MS.gene002042:CDS 45.0%
TTCAATGTTCCAGCTTCTGG+TGG + chr2.3:75839064-75839083 MS.gene002042:CDS 45.0%
TTCTCATCATCAGCAGCTTG+TGG + chr2.3:75837914-75837933 MS.gene002042:CDS 45.0%
TTGGATACATCTGGAAGAGG+AGG - chr2.3:75838107-75838126 None:intergenic 45.0%
! AACTTTTGTGTGCCTGTCCT+TGG - chr2.3:75838210-75838229 None:intergenic 45.0%
! ACCATCACAGCATTTGGGAT+TGG + chr2.3:75839147-75839166 MS.gene002042:CDS 45.0%
! CCACTCTCATCATTAGGTTG+AGG - chr2.3:75839313-75839332 None:intergenic 45.0%
! GGTGGTGGTGTTGAATTTCA+AGG + chr2.3:75839088-75839107 MS.gene002042:CDS 45.0%
! GGTGGTGTTGAATTTCAAGG+TGG + chr2.3:75839091-75839110 MS.gene002042:CDS 45.0%
! GTTGTTGCTGTTGCTGTTGT+TGG - chr2.3:75838571-75838590 None:intergenic 45.0%
! TTGTGGTCCCTTTTGATGGA+AGG + chr2.3:75837931-75837950 MS.gene002042:CDS 45.0%
!! AGCATCAATGAGGTGTTGAG+TGG - chr2.3:75838057-75838076 None:intergenic 45.0%
!! GACGTTGAGCGTTGAGAAAT+TGG - chr2.3:75838396-75838415 None:intergenic 45.0%
!! GATTCTTGTTGTTGGTGGTG+GGG - chr2.3:75837879-75837898 None:intergenic 45.0%
!! GCATCAATGAGGTGTTGAGT+GGG - chr2.3:75838056-75838075 None:intergenic 45.0%
!! TGAGCGTTGAGAAATTGGCT+GGG - chr2.3:75838391-75838410 None:intergenic 45.0%
!! TGTTGTTGGTGGTGTTGATG+AGG - chr2.3:75838557-75838576 None:intergenic 45.0%
!! TTGAGCGTTGAGAAATTGGC+TGG - chr2.3:75838392-75838411 None:intergenic 45.0%
!! TTTTGGAGGATTTGCAACCG+CGG - chr2.3:75838180-75838199 None:intergenic 45.0%
AAGAGGAGGTTCAGATCTGG+TGG - chr2.3:75838093-75838112 None:intergenic 50.0%
AATGTTCCAGCTTCTGGTGG+TGG + chr2.3:75839067-75839086 MS.gene002042:CDS 50.0%
ACACCTCATTGATGCTTCCC+TGG + chr2.3:75838061-75838080 MS.gene002042:CDS 50.0%
AGATCTGGTGGCAATTGCCA+GGG - chr2.3:75838081-75838100 None:intergenic 50.0%
AGCGCGCTATGAAAACTGAG+AGG - chr2.3:75838470-75838489 None:intergenic 50.0%
CAAAACGATCCACCAAGGAC+AGG + chr2.3:75838195-75838214 MS.gene002042:CDS 50.0%
CAACAGGATGATATGGGCGA+AGG + chr2.3:75838755-75838774 MS.gene002042:CDS 50.0%
GAATTTCAAGGTGGACGTGG+TGG + chr2.3:75839100-75839119 MS.gene002042:CDS 50.0%
GATGATATGGGCGAAGGTGA+CGG + chr2.3:75838761-75838780 MS.gene002042:CDS 50.0%
GCCAATCCCAAATGCTGTGA+TGG - chr2.3:75839151-75839170 None:intergenic 50.0%
GGCCTAATTCTCTGGTCAAC+TGG - chr2.3:75838286-75838305 None:intergenic 50.0%
GGGATGGGGATGAATATTGG+TGG - chr2.3:75837859-75837878 None:intergenic 50.0%
GTGGGGATGGGGATGAATAT+TGG - chr2.3:75837862-75837881 None:intergenic 50.0%
TCCTCCAAAACGATCCACCA+AGG + chr2.3:75838190-75838209 MS.gene002042:CDS 50.0%
TGGAAGAGGAGGTTCAGATC+TGG - chr2.3:75838096-75838115 None:intergenic 50.0%
TGGTACGCAGCTTCTTCGTA+AGG - chr2.3:75838509-75838528 None:intergenic 50.0%
! CAGCTTGTGGTCCCTTTTGA+TGG + chr2.3:75837927-75837946 MS.gene002042:CDS 50.0%
! CGGGGAGTGGAAGTACAATT+TGG + chr2.3:75838891-75838910 MS.gene002042:CDS 50.0%
! CTGAGAGGAGCTGATTTCGA+CGG - chr2.3:75838455-75838474 None:intergenic 50.0%
! GGTGATGGCCTTCCATCAAA+AGG - chr2.3:75837942-75837961 None:intergenic 50.0%
! GTTGCTGTTGCTGTTGTTGG+TGG - chr2.3:75838568-75838587 None:intergenic 50.0%
! TTTTCATAGCGCGCTTGCAC+TGG + chr2.3:75838475-75838494 MS.gene002042:CDS 50.0%
! TTTTGTGTGCCTGTCCTTGG+TGG - chr2.3:75838207-75838226 None:intergenic 50.0%
!! CTGTCCTTGGTGGATCGTTT+TGG - chr2.3:75838197-75838216 None:intergenic 50.0%
!! TCCTTGGTGGATCGTTTTGG+AGG - chr2.3:75838194-75838213 None:intergenic 50.0%
!! TTGCCAGGGAAGCATCAATG+AGG - chr2.3:75838067-75838086 None:intergenic 50.0%
!! TTGTTGTTGGTGGTGGGGAT+GGG - chr2.3:75837874-75837893 None:intergenic 50.0%
AACGTCTCACTCCGTAGCAG+CGG + chr2.3:75838410-75838429 MS.gene002042:CDS 55.0%
ACAGTGTAGAGCCGCTGCTA+CGG - chr2.3:75838424-75838443 None:intergenic 55.0%
ACCAACACGCGCCTCTGTTA+GGG + chr2.3:75838525-75838544 MS.gene002042:CDS 55.0%
ACTCTTGCTGCACATGTCGC+CGG - chr2.3:75838260-75838279 None:intergenic 55.0%
AGGATTTGCAACCGCGGTGA+CGG - chr2.3:75838174-75838193 None:intergenic 55.0%
CACACAAAAGTTGACGGCCG+TGG + chr2.3:75838218-75838237 MS.gene002042:CDS 55.0%
CAGATCTGGTGGCAATTGCC+AGG - chr2.3:75838082-75838101 None:intergenic 55.0%
GCATTCGAATTCTCCGGCCA+CGG - chr2.3:75838238-75838257 None:intergenic 55.0%
GCTTCTTCAACAAGCGGAGC+CGG + chr2.3:75838334-75838353 MS.gene002042:CDS 55.0%
GTTACCGGCAACAGCCATGT+GGG + chr2.3:75838862-75838881 MS.gene002042:CDS 55.0%
TACCAACACGCGCCTCTGTT+AGG + chr2.3:75838524-75838543 MS.gene002042:CDS 55.0%
TCGCCGGCATTCGAATTCTC+CGG - chr2.3:75838244-75838263 None:intergenic 55.0%
TGGATGGTACCAGTGAGTGG+TGG + chr2.3:75838911-75838930 MS.gene002042:CDS 55.0%
TGGCCGGAGAATTCGAATGC+CGG + chr2.3:75838238-75838257 MS.gene002042:CDS 55.0%
TGTTACCGGCAACAGCCATG+TGG + chr2.3:75838861-75838880 MS.gene002042:CDS 55.0%
! AACAGCCATGTGGGCTACAG+CGG + chr2.3:75838871-75838890 MS.gene002042:CDS 55.0%
! AGAGGAGCTGATTTCGACGG+CGG - chr2.3:75838452-75838471 None:intergenic 55.0%
! GAAAGTGGCGGTGATGGTGA+TGG + chr2.3:75838695-75838714 MS.gene002042:CDS 55.0%
!! CTTGTTGTTGGTGGTGGGGA+TGG - chr2.3:75837875-75837894 None:intergenic 55.0%
!! TGTTGTTGGTGGTGGGGATG+GGG - chr2.3:75837873-75837892 None:intergenic 55.0%
AACTTCAACCGCCGTCACCG+CGG + chr2.3:75838160-75838179 MS.gene002042:CDS 60.0%
CAAAAGTTGACGGCCGTGGC+CGG + chr2.3:75838222-75838241 MS.gene002042:CDS 60.0%
GTAGCCCACATGGCTGTTGC+CGG - chr2.3:75838869-75838888 None:intergenic 60.0%
GTTGCAGCACCACCACTCAC+TGG - chr2.3:75838923-75838942 None:intergenic 60.0%
! ACAGCCATGTGGGCTACAGC+GGG + chr2.3:75838872-75838891 MS.gene002042:CDS 60.0%
! ACCCTAACAGAGGCGCGTGT+TGG - chr2.3:75838529-75838548 None:intergenic 60.0%
! ATTTGCAACCGCGGTGACGG+CGG - chr2.3:75838171-75838190 None:intergenic 60.0%
! GATATGGGCGAAGGTGACGG+TGG + chr2.3:75838764-75838783 MS.gene002042:CDS 60.0%
!! GTTCCAGCTTCTGGTGGTGG+TGG + chr2.3:75839070-75839089 MS.gene002042:CDS 60.0%
ACTCCCCGCTGTAGCCCACA+TGG - chr2.3:75838879-75838898 None:intergenic 65.0%
ATCATCGCTGCCACCGGCAC+CGG + chr2.3:75838359-75838378 MS.gene002042:CDS 65.0%
CCACCACCACCACCAGAAGC+TGG - chr2.3:75839076-75839095 None:intergenic 65.0%
GGCTGGGATTGTTCCGGTGC+CGG - chr2.3:75838375-75838394 None:intergenic 65.0%
! ATGGGCGAAGGTGACGGTGG+TGG + chr2.3:75838767-75838786 MS.gene002042:CDS 65.0%
! ATGTGGGCTACAGCGGGGAG+TGG + chr2.3:75838878-75838897 MS.gene002042:CDS 65.0%
! CAGCCATGTGGGCTACAGCG+GGG + chr2.3:75838873-75838892 MS.gene002042:CDS 65.0%
! TGGGATTGTTCCGGTGCCGG+TGG - chr2.3:75838372-75838391 None:intergenic 65.0%
!! CCAGCTTCTGGTGGTGGTGG+TGG + chr2.3:75839073-75839092 MS.gene002042:CDS 65.0%
!! GAAGGTGACGGTGGTGGAGG+AGG + chr2.3:75838773-75838792 MS.gene002042:CDS 65.0%
CCGGCGATCATCGCTGCCAC+CGG + chr2.3:75838353-75838372 MS.gene002042:CDS 70.0%
CCGGTGGCAGCGATGATCGC+CGG - chr2.3:75838356-75838375 None:intergenic 70.0%
! GGCGAAGGTGACGGTGGTGG+AGG + chr2.3:75838770-75838789 MS.gene002042:CDS 70.0%
!! GACGGTGGTGGAGGAGGTGG+TGG + chr2.3:75838779-75838798 MS.gene002042:CDS 70.0%
!! GGTGACGGTGGTGGAGGAGG+TGG + chr2.3:75838776-75838795 MS.gene002042:CDS 70.0%
!! GGTGGTGGAGGAGGTGGTGG+TGG + chr2.3:75838782-75838801 MS.gene002042:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 75837813 75839360 75837813 ID=MS.gene002042
chr2.3 mRNA 75837813 75839360 75837813 ID=MS.gene002042.t1;Parent=MS.gene002042
chr2.3 exon 75837813 75839360 75837813 ID=MS.gene002042.t1.exon1;Parent=MS.gene002042.t1
chr2.3 CDS 75837813 75839360 75837813 ID=cds.MS.gene002042.t1;Parent=MS.gene002042.t1
Gene Sequence

>MS.gene002042

ATGGAACTATCAGATTTACAAAACAACAAGCAGAAGAGAGGCACCACCAATATTCATCCCCATCCCCACCACCAACAACAAGAATCATCCTCACCTTCAAATTCTCATCATCAGCAGCTTGTGGTCCCTTTTGATGGAAGGCCATCACCTTTCATTATGGGCTCCATCTCCAATATTCAACCTTCTTCAAACTCTTCTCCCTCCAATTCTTCTTCTTCTTCTTCAGCTTCAGCTTCTGCACCCACTCAACACCTCATTGATGCTTCCCTGGCAATTGCCACCAGATCTGAACCTCCTCTTCCAGATGTATCCAACAACAACAACAACCAAATTCAACCATTTTCTTCAACTTCAACCGCCGTCACCGCGGTTGCAAATCCTCCAAAACGATCCACCAAGGACAGGCACACAAAAGTTGACGGCCGTGGCCGGAGAATTCGAATGCCGGCGACATGTGCAGCAAGAGTTTTCCAGTTGACCAGAGAATTAGGCCACAAATCCGATGGTGAAACAATTGAATGGCTTCTTCAACAAGCGGAGCCGGCGATCATCGCTGCCACCGGCACCGGAACAATCCCAGCCAATTTCTCAACGCTCAACGTCTCACTCCGTAGCAGCGGCTCTACACTGTCTGCGCCGCCGTCGAAATCAGCTCCTCTCAGTTTTCATAGCGCGCTTGCACTGGCTCATCATCCTTACGAAGAAGCTGCGTACCAACACGCGCCTCTGTTAGGGTTTCATCCTCATCAACACCACCAACAACAGCAACAGCAACAACAACTGATGAACGCTGATCAAATTGGTGAAGCACTTTCAAACGAGAATTACATGAGAAAACGGTATAGAGAAGATCTTTTCAAAGATGATAACAACAATCAAAATGAAAGTGGCGGTGATGGTGATGGTTCTTCTTCTCCCAAAAGTTTCAAAACAAATCATCAACAACAGGATGATATGGGCGAAGGTGACGGTGGTGGAGGAGGTGGTGGTGGAGCTTCTTCTTCTTCTGTAGGTAATTCTTTTTCTGGACTTCTTCGACCGTCAAATATGTTACCGGCAACAGCCATGTGGGCTACAGCGGGGAGTGGAAGTACAATTTGGATGGTACCAGTGAGTGGTGGTGCTGCAACTTCAAATTCAGAGACACAGACACAGACACAAAACATGTGGCCTTTTACACCTCATGTTCAGTCTCAAAATCAAGGCAACGCTGCTGCTGTAACTCCGTCTCAGTTACATTTCATGCCAAGGTTCAATGTTCCAGCTTCTGGTGGTGGTGGTGGTGTTGAATTTCAAGGTGGACGTGGTGGTTTACAATTGGGTTCAGCGTATCAACCATCACAGCATTTGGGATTGGCTGTATCTGATTCCAACTTGGGTATGTTTGCTGCTCTTAATGCTTATACAAGAGCTGGCCATTTCAACGTTAACAACTCTTCTGATCATCATCATCATCAACAACATTCAATGTCATTGGACTCTCATTCTCAACCTCAACCTCAACCTAATGATGAGAGTGGAGAAGATGCTCCTAATACCTCACAATGA
Protein sequence

>MS.gene002042.t1

MELSDLQNNKQKRGTTNIHPHPHHQQQESSSPSNSHHQQLVVPFDGRPSPFIMGSISNIQPSSNSSPSNSSSSSSASASAPTQHLIDASLAIATRSEPPLPDVSNNNNNQIQPFSSTSTAVTAVANPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPLSFHSALALAHHPYEEAAYQHAPLLGFHPHQHHQQQQQQQQLMNADQIGEALSNENYMRKRYREDLFKDDNNNQNESGGDGDGSSSPKSFKTNHQQQDDMGEGDGGGGGGGGASSSSVGNSFSGLLRPSNMLPATAMWATAGSGSTIWMVPVSGGAATSNSETQTQTQNMWPFTPHVQSQNQGNAAAVTPSQLHFMPRFNVPASGGGGGVEFQGGRGGLQLGSAYQPSQHLGLAVSDSNLGMFAALNAYTRAGHFNVNNSSDHHHHQQHSMSLDSHSQPQPQPNDESGEDAPNTSQ