AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002046

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002046.t1 MTR_2g048385 88.000 200 23 1 1 199 1 200 8.95e-121 348
MS.gene002046.t1 MTR_7g451160 48.780 123 60 2 7 129 8 127 2.90e-36 132
MS.gene002046.t1 MTR_7g018620 45.963 161 85 2 1 161 61 219 2.06e-33 127
MS.gene002046.t1 MTR_6g052002 46.154 156 82 2 6 161 6 159 1.94e-30 119
MS.gene002046.t1 MTR_6g021620 45.872 109 55 1 1 105 1 109 3.06e-29 109
MS.gene002046.t1 MTR_1g036850 42.353 85 45 2 2 85 5 86 1.83e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002046.t1 AT4G06634 57.792 154 52 4 217 358 181 333 1.23e-42 152
MS.gene002046.t1 AT4G06634 57.792 154 52 4 217 358 212 364 5.09e-42 151
MS.gene002046.t1 AT4G06634 57.792 154 52 4 217 358 219 371 6.81e-42 151

Find 89 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCTCGCTTGCATTTATT+TGG 0.227826 2.3:-75816317 MS.gene002046:CDS
TTTCCTATCGCGGTGGGATT+TGG 0.243457 2.3:+75816165 None:intergenic
AACCGGTCCAATTCAGTTTC+AGG 0.270598 2.3:+75816240 None:intergenic
TTGCAATAAAGAAATGAGTA+TGG 0.295957 2.3:-75816022 MS.gene002046:CDS
AACAAAACTGCTAGACCTTC+TGG 0.304260 2.3:-75814919 MS.gene002046:CDS
TACTTTATCGGCACATCTAT+TGG 0.312836 2.3:+75814966 None:intergenic
GAGTATGGGGTCAGAGATAA+GGG 0.323060 2.3:-75816007 MS.gene002046:CDS
AGAGATAAGGGGAACTACTA+TGG 0.333384 2.3:-75815995 MS.gene002046:CDS
TTACGCTGAGCAACTTTAGA+AGG 0.345270 2.3:+75814628 None:intergenic
GGCATGATATCCCGATATTC+CGG 0.375562 2.3:+75816285 None:intergenic
TCTGTCAGTTTCTCTTCATC+TGG 0.383639 2.3:+75816420 None:intergenic
CTAAAGTTGCTCAGCGTAAA+GGG 0.392561 2.3:-75814624 MS.gene002046:CDS
AGAGGAACCTGAAACTGAAT+TGG 0.393937 2.3:-75816247 MS.gene002046:CDS
CCACAATCATGACATGCATA+TGG 0.397957 2.3:+75816085 None:intergenic
GGAGGAGTTGCATACTTTAT+CGG 0.401475 2.3:+75814954 None:intergenic
GCATGTCATGATTGTGGAAA+TGG 0.403241 2.3:-75816079 MS.gene002046:CDS
CCTTCATAAGGACATGCATA+TGG 0.405323 2.3:+75814865 None:intergenic
ATGGAGTTCCGAGTGTTTGA+TGG 0.421278 2.3:-75816504 MS.gene002046:CDS
CGGTGGGATTTGGATTTCCC+TGG 0.428767 2.3:+75816175 None:intergenic
GTTTCTTCTTTCACTGGCCA+AGG 0.432210 2.3:+75814562 None:intergenic
AGGTTTGGAAGATGTAGAAA+TGG 0.438125 2.3:-75816136 MS.gene002046:CDS
GGTTTGGAAGATGTAGAAAT+GGG 0.438460 2.3:-75816135 MS.gene002046:CDS
TGAGTATGGGGTCAGAGATA+AGG 0.440403 2.3:-75816008 MS.gene002046:CDS
GCAAGTGATCACGATGCTTA+TGG 0.440454 2.3:-75814715 MS.gene002046:CDS
TATGCCAACTAACCTGTTGA+TGG 0.440694 2.3:+75816340 None:intergenic
GTGGAATCGACGCCATCAAC+AGG 0.455113 2.3:-75816352 MS.gene002046:CDS
TCTAAAGTTGCTCAGCGTAA+AGG 0.457185 2.3:-75814625 MS.gene002046:CDS
TCGTAAGTTTCTTCTTTCAC+TGG 0.459248 2.3:+75814556 None:intergenic
GAAGATGGTTGGAGATATGC+TGG 0.474493 2.3:-75814490 MS.gene002046:CDS
TGCAATAAAGAAATGAGTAT+GGG 0.478957 2.3:-75816021 MS.gene002046:CDS
CATGATTGTGGAAATGGAAC+AGG 0.481577 2.3:-75816073 MS.gene002046:CDS
TAATAATGCTGAAAATGAAA+TGG 0.485384 2.3:-75814743 MS.gene002046:CDS
CACAATCATGACATGCATAT+GGG 0.493273 2.3:+75816086 None:intergenic
AGCTTAAACTGCATTTAAAG+AGG 0.494339 2.3:-75814813 MS.gene002046:CDS
ATATTAAAAGTGGCAGGGGT+TGG 0.494716 2.3:+75814595 None:intergenic
TTAGCCATATTAAAAGTGGC+AGG 0.498748 2.3:+75814589 None:intergenic
GACGCCATCAACAGGTTAGT+TGG 0.498821 2.3:-75816344 MS.gene002046:CDS
CCATATGCATGTCCTTATGA+AGG 0.500362 2.3:-75814865 MS.gene002046:CDS
TCCTTATGAAGGGTGTGAAA+AGG 0.501607 2.3:-75814854 MS.gene002046:CDS
TGAAAATGCTATGCATGCTC+TGG 0.502807 2.3:-75814767 MS.gene002046:CDS
ATGAACCTTGAGTCGTCAAC+CGG 0.505318 2.3:+75816223 None:intergenic
AATCCAAATCCCACCGCGAT+AGG 0.505580 2.3:-75816168 MS.gene002046:CDS
CTTCATAAGGACATGCATAT+GGG 0.522116 2.3:+75814866 None:intergenic
GTAAAAGTCAGAAGCAAAGC+AGG 0.525445 2.3:-75814675 MS.gene002046:CDS
TTGGACCGGTTGACGACTCA+AGG 0.526396 2.3:-75816228 MS.gene002046:CDS
GCCTATGTCTGATGAAGAAG+AGG 0.532134 2.3:-75816265 MS.gene002046:CDS
TTCTGGAGCGACATACGGTT+CGG 0.536084 2.3:-75814902 MS.gene002046:CDS
CAGCGAAGAAACTGAGGAGG+AGG 0.538145 2.3:-75814527 MS.gene002046:CDS
AGACCTTCTGGAGCGACATA+CGG 0.541337 2.3:-75814907 MS.gene002046:CDS
CTTCTTTGCCATCAAACACT+CGG 0.548927 2.3:+75816496 None:intergenic
GATAGGAAAAGAGAAAGGTT+TGG 0.551662 2.3:-75816151 MS.gene002046:CDS
ATGGCAAAGAAGATGCATAC+TGG 0.552364 2.3:-75816485 MS.gene002046:CDS
CGCTGAGCAACTTTAGAAGG+AGG 0.554525 2.3:+75814631 None:intergenic
TCCTCTTCTTCATCAGACAT+AGG 0.554962 2.3:+75816264 None:intergenic
TCAGAGGTCGTGCTCGCCAA+TGG 0.557031 2.3:-75816383 MS.gene002046:CDS
GAGATAAGGGGAACTACTAT+GGG 0.561766 2.3:-75815994 MS.gene002046:CDS
GTGACAATGTTGAAGATGGT+TGG 0.563304 2.3:-75814501 MS.gene002046:CDS
GCTTAAACTGCATTTAAAGA+GGG 0.566396 2.3:-75814812 MS.gene002046:CDS
AGCCATATTAAAAGTGGCAG+GGG 0.567185 2.3:+75814591 None:intergenic
CATTTAAAGAGGGAGCATCC+TGG 0.569801 2.3:-75814802 MS.gene002046:CDS
TTTCCCTGGTCACTATCTTG+TGG 0.577317 2.3:+75816189 None:intergenic
AACCTGAAACTGAATTGGAC+CGG 0.581932 2.3:-75816242 MS.gene002046:CDS
CTCGCCAATGGTCACACTGG+TGG 0.584319 2.3:-75816371 MS.gene002046:CDS
AATGGAACAGGAGAACAAAA+CGG 0.584567 2.3:-75816061 MS.gene002046:CDS
TAGCCATATTAAAAGTGGCA+GGG 0.588156 2.3:+75814590 None:intergenic
GAACCGTATGTCGCTCCAGA+AGG 0.605176 2.3:+75814904 None:intergenic
GTGCTCGCCAATGGTCACAC+TGG 0.605649 2.3:-75816374 MS.gene002046:CDS
GATTCCACCAGTGTGACCAT+TGG 0.606399 2.3:+75816367 None:intergenic
CATATGCATGTCCTTATGAA+GGG 0.608937 2.3:-75814864 MS.gene002046:CDS
GATCGTGACAATGTTGAAGA+TGG 0.616587 2.3:-75814505 MS.gene002046:CDS
TATGGTGGAAAACGTTCCAA+TGG 0.620791 2.3:-75814697 MS.gene002046:CDS
GCAATAAAGAAATGAGTATG+GGG 0.621508 2.3:-75816020 MS.gene002046:CDS
ACATGCATATGGGCGATCAG+AGG 0.622960 2.3:+75814876 None:intergenic
ACCGCGATAGGAAAAGAGAA+AGG 0.627915 2.3:-75816156 MS.gene002046:CDS
AGTGATCACGATGCTTATGG+TGG 0.628298 2.3:-75814712 MS.gene002046:CDS
GAACAACGAAGATGATGATG+AGG 0.630489 2.3:-75814467 MS.gene002046:CDS
CCATATGCATGTCATGATTG+TGG 0.638276 2.3:-75816085 MS.gene002046:CDS
TCAACCACAAGATAGTGACC+AGG 0.641180 2.3:-75816193 MS.gene002046:CDS
ATACAGGATGATTGATGTCG+TGG 0.642290 2.3:+75815969 None:intergenic
CTGGTGGCTGCTATGCATTG+AGG 0.655291 2.3:-75816466 MS.gene002046:CDS
GTTTGGAAGATGTAGAAATG+GGG 0.658874 2.3:-75816134 MS.gene002046:CDS
TGAAGACAGCGAAGAAACTG+AGG 0.661243 2.3:-75814533 MS.gene002046:CDS
AGACAGCGAAGAAACTGAGG+AGG 0.668007 2.3:-75814530 MS.gene002046:CDS
CAACCACAAGATAGTGACCA+GGG 0.674930 2.3:-75816192 MS.gene002046:CDS
TATTGGTGTACTCTGCAGTG+AGG 0.712114 2.3:+75814983 None:intergenic
AAGATGGTTGGAGATATGCT+GGG 0.715505 2.3:-75814489 MS.gene002046:CDS
AGTATGGGGTCAGAGATAAG+GGG 0.721262 2.3:-75816006 MS.gene002046:CDS
GCAAAGAAGATGCATACTGG+TGG 0.744457 2.3:-75816482 MS.gene002046:CDS
GATGCGTTGATGTTACTCAG+AGG 0.747828 2.3:-75816399 MS.gene002046:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATATAAATTTTCAAGTT+CGG - chr2.3:75815484-75815503 MS.gene002046:intron 10.0%
!!! TTAAGTTTTAAGAATAAATA+GGG - chr2.3:75815283-75815302 MS.gene002046:intron 10.0%
!! AATATTATTCTGTAATCAAA+AGG - chr2.3:75815395-75815414 MS.gene002046:intron 15.0%
!! ATATTATTCTGTAATCAAAA+GGG - chr2.3:75815396-75815415 MS.gene002046:intron 15.0%
!! TGATATAGAAGAATAAAATA+GGG + chr2.3:75815427-75815446 None:intergenic 15.0%
!!! AATTGAAGTTTTATTAATGT+CGG - chr2.3:75815628-75815647 MS.gene002046:intron 15.0%
!!! ATATATAAATTTTCAAGTTC+GGG - chr2.3:75815485-75815504 MS.gene002046:intron 15.0%
!!! ATTTTTGAGAAAAAAAATAC+AGG + chr2.3:75815001-75815020 None:intergenic 15.0%
!!! GTTAAGTTTTAAGAATAAAT+AGG - chr2.3:75815282-75815301 MS.gene002046:intron 15.0%
!!! TAAGTTTTAAGAATAAATAG+GGG - chr2.3:75815284-75815303 MS.gene002046:intron 15.0%
!!! TATTTTAATACTATTTTGCA+AGG - chr2.3:75815819-75815838 MS.gene002046:intron 15.0%
!! ATAATTAATTAAGTCAGTAG+TGG - chr2.3:75815256-75815275 MS.gene002046:intron 20.0%
!! CTGATATAGAAGAATAAAAT+AGG + chr2.3:75815428-75815447 None:intergenic 20.0%
!! TAATAATGCTGAAAATGAAA+TGG - chr2.3:75816208-75816227 MS.gene002046:CDS 20.0%
!! TAATTAATTAAGTCAGTAGT+GGG - chr2.3:75815257-75815276 MS.gene002046:intron 20.0%
!! TGATTAACAGAAAAATTTGA+CGG - chr2.3:75815564-75815583 MS.gene002046:intron 20.0%
!!! ATTGAAGTTTTATTAATGTC+GGG - chr2.3:75815629-75815648 MS.gene002046:intron 20.0%
!!! TATATAAATTTTCAAGTTCG+GGG - chr2.3:75815486-75815505 MS.gene002046:intron 20.0%
!!! TTTTATTCTTCTATATCAGT+TGG - chr2.3:75815429-75815448 MS.gene002046:intron 20.0%
!!! TTTTTTAGCCATATTAAAAG+TGG + chr2.3:75816369-75816388 None:intergenic 20.0%
! AGTAGTTAATTATGCAGTTA+TGG - chr2.3:75815212-75815231 MS.gene002046:intron 25.0%
! ATTAACGTTGTACAATTTCA+GGG - chr2.3:75815600-75815619 MS.gene002046:intron 25.0%
! TGCAATAAAGAAATGAGTAT+GGG - chr2.3:75814930-75814949 MS.gene002046:CDS 25.0%
! TGGTTTCTATCATAATCATT+GGG - chr2.3:75815449-75815468 MS.gene002046:intron 25.0%
! TGTCAATCAAAAATTGTTTG+AGG + chr2.3:75815941-75815960 None:intergenic 25.0%
! TTAATATGGCTAAAAAACCT+TGG - chr2.3:75816372-75816391 MS.gene002046:CDS 25.0%
! TTGCAATAAAGAAATGAGTA+TGG - chr2.3:75814929-75814948 MS.gene002046:CDS 25.0%
! TTGGTTTCTATCATAATCAT+TGG - chr2.3:75815448-75815467 MS.gene002046:intron 25.0%
!! CACATTTAGAATGAGTAAAT+AGG + chr2.3:75815695-75815714 None:intergenic 25.0%
!! GTCATTATACTTCAAGTTAT+GGG - chr2.3:75815080-75815099 MS.gene002046:intron 25.0%
!! TAGCATTTTCATCATTTATG+TGG + chr2.3:75816175-75816194 None:intergenic 25.0%
!! TGTCATTATACTTCAAGTTA+TGG - chr2.3:75815079-75815098 MS.gene002046:intron 25.0%
!!! ATATAAATTTTCAAGTTCGG+GGG - chr2.3:75815487-75815506 MS.gene002046:intron 25.0%
!!! ATGATTTTAATATGTGCACT+TGG - chr2.3:75815755-75815774 MS.gene002046:intron 25.0%
!!! ATTTATTTGGCGTTTTAAAC+CGG - chr2.3:75814647-75814666 MS.gene002046:CDS 25.0%
!!! TTGAAGTTTTATTAATGTCG+GGG - chr2.3:75815630-75815649 MS.gene002046:intron 25.0%
AAAATCATACTTCATGAGAC+AGG + chr2.3:75815743-75815762 None:intergenic 30.0%
AATAATATTGCAGAACTTCG+AGG + chr2.3:75815384-75815403 None:intergenic 30.0%
ACAAACAGAGTATATGATCA+AGG - chr2.3:75815027-75815046 MS.gene002046:intron 30.0%
ACGAAACTTACAATTTCAAG+GGG - chr2.3:75815662-75815681 MS.gene002046:intron 30.0%
AGCTTAAACTGCATTTAAAG+AGG - chr2.3:75816138-75816157 MS.gene002046:CDS 30.0%
ATAATATTGCAGAACTTCGA+GGG + chr2.3:75815383-75815402 None:intergenic 30.0%
GACGAAACTTACAATTTCAA+GGG - chr2.3:75815661-75815680 MS.gene002046:intron 30.0%
GATTAACGTTGTACAATTTC+AGG - chr2.3:75815599-75815618 MS.gene002046:intron 30.0%
GCAATAAAGAAATGAGTATG+GGG - chr2.3:75814931-75814950 MS.gene002046:CDS 30.0%
GCTTAAACTGCATTTAAAGA+GGG - chr2.3:75816139-75816158 MS.gene002046:CDS 30.0%
GGTTTCTATCATAATCATTG+GGG - chr2.3:75815450-75815469 MS.gene002046:intron 30.0%
TAACAGAAAAATTTGACGGA+GGG - chr2.3:75815568-75815587 MS.gene002046:intron 30.0%
TGACGAAACTTACAATTTCA+AGG - chr2.3:75815660-75815679 MS.gene002046:intron 30.0%
TTAACAGAAAAATTTGACGG+AGG - chr2.3:75815567-75815586 MS.gene002046:intron 30.0%
TTAACGTTGTACAATTTCAG+GGG - chr2.3:75815601-75815620 MS.gene002046:intron 30.0%
!!! AGTTTTGTTTGCTTTTCTGA+AGG + chr2.3:75816021-75816040 None:intergenic 30.0%
!!! TATAAATTTTCAAGTTCGGG+GGG - chr2.3:75815488-75815507 MS.gene002046:intron 30.0%
!!! TGAAGTTTTATTAATGTCGG+GGG - chr2.3:75815631-75815650 MS.gene002046:intron 30.0%
AACAGAAAAATTTGACGGAG+GGG - chr2.3:75815569-75815588 MS.gene002046:intron 35.0%
AAGAATAAATAGGGGAGAGA+AGG - chr2.3:75815292-75815311 MS.gene002046:intron 35.0%
AATGGAACAGGAGAACAAAA+CGG - chr2.3:75814890-75814909 MS.gene002046:CDS 35.0%
ACATAAGTGCAAAACTTCAG+GGG - chr2.3:75815519-75815538 MS.gene002046:intron 35.0%
AGAATAAATAGGGGAGAGAA+GGG - chr2.3:75815293-75815312 MS.gene002046:intron 35.0%
AGGTTTGGAAGATGTAGAAA+TGG - chr2.3:75814815-75814834 MS.gene002046:CDS 35.0%
CACAATCATGACATGCATAT+GGG + chr2.3:75814868-75814887 None:intergenic 35.0%
CACATAAGTGCAAAACTTCA+GGG - chr2.3:75815518-75815537 MS.gene002046:intron 35.0%
CATATGCATGTCCTTATGAA+GGG - chr2.3:75816087-75816106 MS.gene002046:CDS 35.0%
CGAAACTTACAATTTCAAGG+GGG - chr2.3:75815663-75815682 MS.gene002046:intron 35.0%
CTTCATAAGGACATGCATAT+GGG + chr2.3:75816088-75816107 None:intergenic 35.0%
GATAGGAAAAGAGAAAGGTT+TGG - chr2.3:75814800-75814819 MS.gene002046:CDS 35.0%
GGTTTGGAAGATGTAGAAAT+GGG - chr2.3:75814816-75814835 MS.gene002046:CDS 35.0%
GTGTTCACAATCACAATAGA+TGG - chr2.3:75815712-75815731 MS.gene002046:intron 35.0%
GTTTGGAAGATGTAGAAATG+GGG - chr2.3:75814817-75814836 MS.gene002046:CDS 35.0%
TAACGTTGTACAATTTCAGG+GGG - chr2.3:75815602-75815621 MS.gene002046:intron 35.0%
TACTTTATCGGCACATCTAT+TGG + chr2.3:75815988-75816007 None:intergenic 35.0%
TAGCCATATTAAAAGTGGCA+GGG + chr2.3:75816364-75816383 None:intergenic 35.0%
TCGTAAGTTTCTTCTTTCAC+TGG + chr2.3:75816398-75816417 None:intergenic 35.0%
TGTTCTCGCTTGCATTTATT+TGG - chr2.3:75814634-75814653 MS.gene002046:CDS 35.0%
TTAGCCATATTAAAAGTGGC+AGG + chr2.3:75816365-75816384 None:intergenic 35.0%
! TTAATTAAGTCAGTAGTGGG+AGG - chr2.3:75815260-75815279 MS.gene002046:intron 35.0%
! TTGCTTCTGACTTTTACCAT+TGG + chr2.3:75816273-75816292 None:intergenic 35.0%
! TTTTCATCATTTATGTGGCC+AGG + chr2.3:75816170-75816189 None:intergenic 35.0%
!! TTTGTTTGCTTTTCTGAAGG+AGG + chr2.3:75816018-75816037 None:intergenic 35.0%
!!! AAGTTTTATTAATGTCGGGG+GGG - chr2.3:75815633-75815652 MS.gene002046:intron 35.0%
!!! GAAGTTTTATTAATGTCGGG+GGG - chr2.3:75815632-75815651 MS.gene002046:intron 35.0%
AAAGATTCACCTTGTCCTCA+AGG + chr2.3:75815135-75815154 None:intergenic 40.0%
AACAAAACTGCTAGACCTTC+TGG - chr2.3:75816032-75816051 MS.gene002046:CDS 40.0%
AACCTGAAACTGAATTGGAC+CGG - chr2.3:75814709-75814728 MS.gene002046:CDS 40.0%
AACGTTGTACAATTTCAGGG+GGG - chr2.3:75815603-75815622 MS.gene002046:intron 40.0%
AAGATGGTTGGAGATATGCT+GGG - chr2.3:75816462-75816481 MS.gene002046:CDS 40.0%
ACAGAAAAATTTGACGGAGG+GGG - chr2.3:75815570-75815589 MS.gene002046:intron 40.0%
AGAGATAAGGGGAACTACTA+TGG - chr2.3:75814956-75814975 MS.gene002046:CDS 40.0%
AGAGGAACCTGAAACTGAAT+TGG - chr2.3:75814704-75814723 MS.gene002046:CDS 40.0%
AGCCATATTAAAAGTGGCAG+GGG + chr2.3:75816363-75816382 None:intergenic 40.0%
AGGACAAGGTGAATCTTTAG+GGG - chr2.3:75815137-75815156 MS.gene002046:intron 40.0%
ATAAGTGCAAAACTTCAGGG+GGG - chr2.3:75815521-75815540 MS.gene002046:intron 40.0%
ATACAGGATGATTGATGTCG+TGG + chr2.3:75814985-75815004 None:intergenic 40.0%
ATATTAAAAGTGGCAGGGGT+TGG + chr2.3:75816359-75816378 None:intergenic 40.0%
ATGGCAAAGAAGATGCATAC+TGG - chr2.3:75814466-75814485 MS.gene002046:CDS 40.0%
CATAAGTGCAAAACTTCAGG+GGG - chr2.3:75815520-75815539 MS.gene002046:intron 40.0%
CATGATTGTGGAAATGGAAC+AGG - chr2.3:75814878-75814897 MS.gene002046:CDS 40.0%
CCACAATCATGACATGCATA+TGG + chr2.3:75814869-75814888 None:intergenic 40.0%
CCATATGCATGTCATGATTG+TGG - chr2.3:75814866-75814885 MS.gene002046:CDS 40.0%
CCATATGCATGTCCTTATGA+AGG - chr2.3:75816086-75816105 MS.gene002046:CDS 40.0%
CCTTCATAAGGACATGCATA+TGG + chr2.3:75816089-75816108 None:intergenic 40.0%
CGTCAAATGAAACCTCTAGA+TGG + chr2.3:75815784-75815803 None:intergenic 40.0%
CTAAAGTTGCTCAGCGTAAA+GGG - chr2.3:75816327-75816346 MS.gene002046:CDS 40.0%
CTTCTTTGCCATCAAACACT+CGG + chr2.3:75814458-75814477 None:intergenic 40.0%
GAGATAAGGGGAACTACTAT+GGG - chr2.3:75814957-75814976 MS.gene002046:CDS 40.0%
GAGGACAAGGTGAATCTTTA+GGG - chr2.3:75815136-75815155 MS.gene002046:intron 40.0%
GATATCATAAGTGTCCACCT+GGG + chr2.3:75815107-75815126 None:intergenic 40.0%
GATCGTGACAATGTTGAAGA+TGG - chr2.3:75816446-75816465 MS.gene002046:CDS 40.0%
GCACATAAGTGCAAAACTTC+AGG - chr2.3:75815517-75815536 MS.gene002046:intron 40.0%
GCATGTCATGATTGTGGAAA+TGG - chr2.3:75814872-75814891 MS.gene002046:CDS 40.0%
GGAGGAGTTGCATACTTTAT+CGG + chr2.3:75816000-75816019 None:intergenic 40.0%
GTAAAAGTCAGAAGCAAAGC+AGG - chr2.3:75816276-75816295 MS.gene002046:CDS 40.0%
GTGACAATGTTGAAGATGGT+TGG - chr2.3:75816450-75816469 MS.gene002046:CDS 40.0%
TATGCCAACTAACCTGTTGA+TGG + chr2.3:75814614-75814633 None:intergenic 40.0%
TCCTCTTCTTCATCAGACAT+AGG + chr2.3:75814690-75814709 None:intergenic 40.0%
TCTGTCAGTTTCTCTTCATC+TGG + chr2.3:75814534-75814553 None:intergenic 40.0%
TGAAAATGCTATGCATGCTC+TGG - chr2.3:75816184-75816203 MS.gene002046:CDS 40.0%
TGAGGACAAGGTGAATCTTT+AGG - chr2.3:75815135-75815154 MS.gene002046:intron 40.0%
TTACGCTGAGCAACTTTAGA+AGG + chr2.3:75816326-75816345 None:intergenic 40.0%
TTATGATATCCTCCACCTTG+AGG - chr2.3:75815117-75815136 MS.gene002046:intron 40.0%
! ACCTTTCTCTTTTCCTATCG+CGG + chr2.3:75814799-75814818 None:intergenic 40.0%
! ATGATGCATGACTGCACTTT+TGG - chr2.3:75815883-75815902 MS.gene002046:intron 40.0%
! GAACAACGAAGATGATGATG+AGG - chr2.3:75816484-75816503 MS.gene002046:CDS 40.0%
! TATGGTGGAAAACGTTCCAA+TGG - chr2.3:75816254-75816273 MS.gene002046:CDS 40.0%
! TCCTTATGAAGGGTGTGAAA+AGG - chr2.3:75816097-75816116 MS.gene002046:CDS 40.0%
! TCTAAAGTTGCTCAGCGTAA+AGG - chr2.3:75816326-75816345 MS.gene002046:CDS 40.0%
!! GCGTTTTAAACCGGAATATC+GGG - chr2.3:75814656-75814675 MS.gene002046:CDS 40.0%
!! GGCGTTTTAAACCGGAATAT+CGG - chr2.3:75814655-75814674 MS.gene002046:CDS 40.0%
!!! AACCCCTGCCACTTTTAATA+TGG - chr2.3:75816358-75816377 MS.gene002046:CDS 40.0%
!!! AGGCATTTTCAAGTTTGGCT+TGG + chr2.3:75816303-75816322 None:intergenic 40.0%
!!! GAAGGAGGCATTTTCAAGTT+TGG + chr2.3:75816308-75816327 None:intergenic 40.0%
!!! GGCATTTTCAAGTTTGGCTT+GGG + chr2.3:75816302-75816321 None:intergenic 40.0%
AACCGGTCCAATTCAGTTTC+AGG + chr2.3:75814714-75814733 None:intergenic 45.0%
ACCGCGATAGGAAAAGAGAA+AGG - chr2.3:75814795-75814814 MS.gene002046:CDS 45.0%
ACGTTGTACAATTTCAGGGG+GGG - chr2.3:75815604-75815623 MS.gene002046:intron 45.0%
AGTATGGGGTCAGAGATAAG+GGG - chr2.3:75814945-75814964 MS.gene002046:CDS 45.0%
AGTGATCACGATGCTTATGG+TGG - chr2.3:75816239-75816258 MS.gene002046:CDS 45.0%
ATCTGAGGATTTGACTGGGA+AGG - chr2.3:75815329-75815348 MS.gene002046:intron 45.0%
ATGAACCTTGAGTCGTCAAC+CGG + chr2.3:75814731-75814750 None:intergenic 45.0%
ATGGAGTTCCGAGTGTTTGA+TGG - chr2.3:75814447-75814466 MS.gene002046:CDS 45.0%
CAACCACAAGATAGTGACCA+GGG - chr2.3:75814759-75814778 MS.gene002046:CDS 45.0%
GAAGATGGTTGGAGATATGC+TGG - chr2.3:75816461-75816480 MS.gene002046:CDS 45.0%
GAGTATGGGGTCAGAGATAA+GGG - chr2.3:75814944-75814963 MS.gene002046:CDS 45.0%
GCAAAGAAGATGCATACTGG+TGG - chr2.3:75814469-75814488 MS.gene002046:CDS 45.0%
GCAAGTGATCACGATGCTTA+TGG - chr2.3:75816236-75816255 MS.gene002046:CDS 45.0%
GCCTATGTCTGATGAAGAAG+AGG - chr2.3:75814686-75814705 MS.gene002046:CDS 45.0%
GGACAAGGTGAATCTTTAGG+GGG - chr2.3:75815138-75815157 MS.gene002046:intron 45.0%
GGATATCATAAGTGTCCACC+TGG + chr2.3:75815108-75815127 None:intergenic 45.0%
GGCATGATATCCCGATATTC+CGG + chr2.3:75814669-75814688 None:intergenic 45.0%
GTTTCTTCTTTCACTGGCCA+AGG + chr2.3:75816392-75816411 None:intergenic 45.0%
TAAGTGCAAAACTTCAGGGG+GGG - chr2.3:75815522-75815541 MS.gene002046:intron 45.0%
TATTGGTGTACTCTGCAGTG+AGG + chr2.3:75815971-75815990 None:intergenic 45.0%
TCAACCACAAGATAGTGACC+AGG - chr2.3:75814758-75814777 MS.gene002046:CDS 45.0%
TCTGAGGATTTGACTGGGAA+GGG - chr2.3:75815330-75815349 MS.gene002046:intron 45.0%
TGAAGACAGCGAAGAAACTG+AGG - chr2.3:75816418-75816437 MS.gene002046:CDS 45.0%
TGAGTATGGGGTCAGAGATA+AGG - chr2.3:75814943-75814962 MS.gene002046:CDS 45.0%
TGCACTTGGTTTCCATCTAG+AGG - chr2.3:75815769-75815788 MS.gene002046:intron 45.0%
TTTCCCTGGTCACTATCTTG+TGG + chr2.3:75814765-75814784 None:intergenic 45.0%
! ACAAGGTGAATCTTTAGGGG+GGG - chr2.3:75815140-75815159 MS.gene002046:intron 45.0%
! GACAAGGTGAATCTTTAGGG+GGG - chr2.3:75815139-75815158 MS.gene002046:intron 45.0%
! GATGCGTTGATGTTACTCAG+AGG - chr2.3:75814552-75814571 MS.gene002046:CDS 45.0%
! GCCTTTTCACACCCTTCATA+AGG + chr2.3:75816101-75816120 None:intergenic 45.0%
! TACTTCAAGTTATGGGACCC+AGG - chr2.3:75815087-75815106 MS.gene002046:intron 45.0%
! TTCTCTTTTCCTATCGCGGT+GGG + chr2.3:75814795-75814814 None:intergenic 45.0%
! TTTCTCTTTTCCTATCGCGG+TGG + chr2.3:75814796-75814815 None:intergenic 45.0%
!! AAGGGGCCATTTTGGCATTA+GGG - chr2.3:75815348-75815367 MS.gene002046:intron 45.0%
!! CATTTAAAGAGGGAGCATCC+TGG - chr2.3:75816149-75816168 MS.gene002046:CDS 45.0%
AATCCAAATCCCACCGCGAT+AGG - chr2.3:75814783-75814802 MS.gene002046:CDS 50.0%
ACATGCATATGGGCGATCAG+AGG + chr2.3:75816078-75816097 None:intergenic 50.0%
AGACAGCGAAGAAACTGAGG+AGG - chr2.3:75816421-75816440 MS.gene002046:CDS 50.0%
CTGAGGATTTGACTGGGAAG+GGG - chr2.3:75815331-75815350 MS.gene002046:intron 50.0%
GACGCCATCAACAGGTTAGT+TGG - chr2.3:75814607-75814626 MS.gene002046:CDS 50.0%
GATTCACCTTGTCCTCAAGG+TGG + chr2.3:75815132-75815151 None:intergenic 50.0%
GATTCCACCAGTGTGACCAT+TGG + chr2.3:75814587-75814606 None:intergenic 50.0%
GCACCTCCCTAATGCCAAAA+TGG + chr2.3:75815357-75815376 None:intergenic 50.0%
GGAGAGAAGGGAAGATTGAG+GGG - chr2.3:75815305-75815324 MS.gene002046:intron 50.0%
GGGAGAGAAGGGAAGATTGA+GGG - chr2.3:75815304-75815323 MS.gene002046:intron 50.0%
GGGCATCTGAGGATTTGACT+GGG - chr2.3:75815325-75815344 MS.gene002046:intron 50.0%
TATCCTCCACCTTGAGGACA+AGG - chr2.3:75815123-75815142 MS.gene002046:intron 50.0%
TTTCCTATCGCGGTGGGATT+TGG + chr2.3:75814789-75814808 None:intergenic 50.0%
! CGCTGAGCAACTTTAGAAGG+AGG + chr2.3:75816323-75816342 None:intergenic 50.0%
! TTCAAGTTATGGGACCCAGG+TGG - chr2.3:75815090-75815109 MS.gene002046:intron 50.0%
!! AGACCTTCTGGAGCGACATA+CGG - chr2.3:75816044-75816063 MS.gene002046:CDS 50.0%
!! GAAGGGGCCATTTTGGCATT+AGG - chr2.3:75815347-75815366 MS.gene002046:intron 50.0%
!! TTCTGGAGCGACATACGGTT+CGG - chr2.3:75816049-75816068 MS.gene002046:CDS 50.0%
CAGCGAAGAAACTGAGGAGG+AGG - chr2.3:75816424-75816443 MS.gene002046:CDS 55.0%
CGGTGGGATTTGGATTTCCC+TGG + chr2.3:75814779-75814798 None:intergenic 55.0%
CTGGTGGCTGCTATGCATTG+AGG - chr2.3:75814485-75814504 MS.gene002046:CDS 55.0%
GAACCGTATGTCGCTCCAGA+AGG + chr2.3:75816050-75816069 None:intergenic 55.0%
GGGGAGAGAAGGGAAGATTG+AGG - chr2.3:75815303-75815322 MS.gene002046:intron 55.0%
GTGGAATCGACGCCATCAAC+AGG - chr2.3:75814599-75814618 MS.gene002046:CDS 55.0%
TCACCTTGTCCTCAAGGTGG+AGG + chr2.3:75815129-75815148 None:intergenic 55.0%
TTGGACCGGTTGACGACTCA+AGG - chr2.3:75814723-75814742 MS.gene002046:CDS 55.0%
! GGGGCATCTGAGGATTTGAC+TGG - chr2.3:75815324-75815343 MS.gene002046:intron 55.0%
! TGACTGGGAAGGGGCCATTT+TGG - chr2.3:75815340-75815359 MS.gene002046:intron 55.0%
!! GGAAGATTGAGGGGCATCTG+AGG - chr2.3:75815314-75815333 MS.gene002046:intron 55.0%
!! GGGCCATTTTGGCATTAGGG+AGG - chr2.3:75815351-75815370 MS.gene002046:intron 55.0%
CTCGCCAATGGTCACACTGG+TGG - chr2.3:75814580-75814599 MS.gene002046:CDS 60.0%
GTGCTCGCCAATGGTCACAC+TGG - chr2.3:75814577-75814596 MS.gene002046:CDS 60.0%
TCAGAGGTCGTGCTCGCCAA+TGG - chr2.3:75814568-75814587 MS.gene002046:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 75814447 75816526 75814447 ID=MS.gene002046
chr2.3 mRNA 75814447 75816526 75814447 ID=MS.gene002046.t1;Parent=MS.gene002046
chr2.3 exon 75815973 75816526 75815973 ID=MS.gene002046.t1.exon1;Parent=MS.gene002046.t1
chr2.3 CDS 75815973 75816526 75815973 ID=cds.MS.gene002046.t1;Parent=MS.gene002046.t1
chr2.3 exon 75814447 75815011 75814447 ID=MS.gene002046.t1.exon2;Parent=MS.gene002046.t1
chr2.3 CDS 75814447 75815011 75814447 ID=cds.MS.gene002046.t1;Parent=MS.gene002046.t1
Gene Sequence

>MS.gene002046

ATGGAGTTCCGAGTGTTTGATGGCAAAGAAGATGCATACTGGTGGCTGCTATGCATTGAGGAACATTTCAAAAAGAGAGATACACCAGATGAAGAGAAACTGACAGATGCGTTGATGTTACTCAGAGGTCGTGCTCGCCAATGGTCACACTGGTGGAATCGACGCCATCAACAGGTTAGTTGGCATATGTTCTCGCTTGCATTTATTTGGCGTTTTAAACCGGAATATCGGGATATCATGCCTATGTCTGATGAAGAAGAGGAACCTGAAACTGAATTGGACCGGTTGACGACTCAAGGTTCATTCAATATTCAACCACAAGATAGTGACCAGGGAAATCCAAATCCCACCGCGATAGGAAAAGAGAAAGGTTTGGAAGATGTAGAAATGGGGAAAATAGAGAGATATGTAGAAAATGCCCATATGCATGTCATGATTGTGGAAATGGAACAGGAGAACAAAACGGATTTGTGCAAACTTATTTGCAATAAAGAAATGAGTATGGGGTCAGAGATAAGGGGAACTACTATGGGCACCACGACATCAATCATCCTGTATTTTTTTTCTCAAAAATATCATTACAAACAGAGTATATGATCAAGGCATAAGTTTGCATGATTCACACATCGCTCTGTCATTATACTTCAAGTTATGGGACCCAGGTGGACACTTATGATATCCTCCACCTTGAGGACAAGGTGAATCTTTAGGGGGGGAGTATTGTTAGATATCTTATTAGAATTGTGTCAGTTTTATTATAATTATAGTAGTTAATTATGCAGTTATGGTTTATTAATATATAATGATTAATAATTAATTAAGTCAGTAGTGGGAGGTTAAGTTTTAAGAATAAATAGGGGAGAGAAGGGAAGATTGAGGGGCATCTGAGGATTTGACTGGGAAGGGGCCATTTTGGCATTAGGGAGGTGCAGACCCTCGAAGTTCTGCAATATTATTCTGTAATCAAAAGGGATTTGCCCTATTTTATTCTTCTATATCAGTTGGTTTCTATCATAATCATTGGGGATAAGAAAAAAAATATATAAATTTTCAAGTTCGGGGGGCATTTTGCACATAAGTGCAAAACTTCAGGGGGGGTATTTGCAAAACGTTATGTTGATTAACAGAAAAATTTGACGGAGGGGGTAAATTGATTAACGTTGTACAATTTCAGGGGGGGTAATTGAAGTTTTATTAATGTCGGGGGGGTAATTGACGAAACTTACAATTTCAAGGGGGTAATTGCCTATTTACTCATTCTAAATGTGTTCACAATCACAATAGATGGTACTACCTGTCTCATGAAGTATGATTTTAATATGTGCACTTGGTTTCCATCTAGAGGTTTCATTTGACGTGCAAAATATATACATATTTTAATACTATTTTGCAAGGTTTCTGATATCTTCGATATCTATAATCTGTTTACAATTTAAATGATGCATGACTGCACTTTTGGATGTAGATGTGCATGAATAATGTGAAATATCACCTCAAACAATTTTTGATTGACAGTCTTAACCTCACTGCAGAGTACACCAATAGATGTGCCGATAAAGTATGCAACTCCTCCTTCAGAAAAGCAAACAAAACTGCTAGACCTTCTGGAGCGACATACGGTTCGGCATCCTCTGATCGCCCATATGCATGTCCTTATGAAGGGTGTGAAAAGGCTTACATTCATGAGTACAAGCTTAAACTGCATTTAAAGAGGGAGCATCCTGGCCACATAAATGATGAAAATGCTATGCATGCTCTGGCTAATAATGCTGAAAATGAAATGGATGAAGCAAGTGATCACGATGCTTATGGTGGAAAACGTTCCAATGGTAAAAGTCAGAAGCAAAGCAGGCCCAAGCCAAACTTGAAAATGCCTCCTTCTAAAGTTGCTCAGCGTAAAGGGTCTACTCCAACCCCTGCCACTTTTAATATGGCTAAAAAACCTTGGCCAGTGAAAGAAGAAACTTACGATGAAGACAGCGAAGAAACTGAGGAGGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCTGGGAACAACGAAGATGATGATGAGGAAACAGAATATGAAGACTGA
Protein sequence

>MS.gene002046.t1

MEFRVFDGKEDAYWWLLCIEEHFKKRDTPDEEKLTDALMLLRGRARQWSHWWNRRHQQVSWHMFSLAFIWRFKPEYRDIMPMSDEEEEPETELDRLTTQGSFNIQPQDSDQGNPNPTAIGKEKGLEDVEMGKIERYVENAHMHVMIVEMEQENKTDLCKLICNKEMSMGSEIRGTTMGTTTSIILLNLTAEYTNRCADKVCNSSFRKANKTARPSGATYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHINDENAMHALANNAENEMDEASDHDAYGGKRSNGKSQKQSRPKPNLKMPPSKVAQRKGSTPTPATFNMAKKPWPVKEETYDEDSEETEEEDRDNVEDGWRYAGNNEDDDEETEYED