Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002057.t1 | XP_003592973.1 | 89.6 | 469 | 26 | 4 | 1 | 464 | 1 | 451 | 3.20E-239 | 837.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002057.t1 | Q84WU6 | 38.3 | 394 | 188 | 10 | 10 | 358 | 16 | 399 | 1.3e-66 | 255.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002057.t1 | G7INP6 | 89.6 | 469 | 26 | 4 | 1 | 464 | 1 | 451 | 2.3e-239 | 837.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene002057.t1 | TF | B3-ARF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002057.t1 | MTR_2g006270 | 88.486 | 469 | 31 | 4 | 1 | 464 | 1 | 451 | 0.0 | 836 |
MS.gene002057.t1 | MTR_2g006380 | 72.009 | 468 | 91 | 10 | 7 | 464 | 14 | 451 | 0.0 | 662 |
MS.gene002057.t1 | MTR_5g061220 | 45.541 | 527 | 209 | 13 | 7 | 466 | 13 | 528 | 4.03e-135 | 400 |
MS.gene002057.t1 | MTR_1g058210 | 49.891 | 459 | 198 | 10 | 6 | 455 | 5 | 440 | 4.87e-134 | 394 |
MS.gene002057.t1 | MTR_2g024430 | 45.597 | 511 | 215 | 13 | 6 | 463 | 13 | 513 | 9.05e-131 | 388 |
MS.gene002057.t1 | MTR_5g040880 | 43.726 | 526 | 224 | 13 | 3 | 466 | 1 | 516 | 6.09e-121 | 363 |
MS.gene002057.t1 | MTR_5g082140 | 43.376 | 468 | 239 | 13 | 5 | 459 | 4 | 458 | 1.73e-107 | 327 |
MS.gene002057.t1 | MTR_5g040740 | 42.857 | 469 | 194 | 12 | 5 | 465 | 4 | 406 | 2.31e-105 | 320 |
MS.gene002057.t1 | MTR_3g073420 | 35.663 | 558 | 252 | 16 | 5 | 465 | 11 | 558 | 1.24e-94 | 298 |
MS.gene002057.t1 | MTR_5g061890 | 45.198 | 354 | 164 | 13 | 7 | 346 | 6 | 343 | 4.22e-89 | 277 |
MS.gene002057.t1 | MTR_5g060780 | 45.042 | 353 | 164 | 13 | 7 | 344 | 6 | 343 | 6.50e-89 | 277 |
MS.gene002057.t1 | MTR_5g460920 | 45.042 | 353 | 164 | 13 | 7 | 344 | 6 | 343 | 1.25e-87 | 273 |
MS.gene002057.t1 | MTR_5g060630 | 41.388 | 418 | 176 | 15 | 6 | 363 | 5 | 413 | 1.40e-80 | 259 |
MS.gene002057.t1 | MTR_5g460740 | 41.388 | 418 | 176 | 15 | 6 | 363 | 5 | 413 | 1.40e-80 | 259 |
MS.gene002057.t1 | MTR_2g094570 | 39.152 | 401 | 179 | 12 | 12 | 358 | 10 | 399 | 7.89e-80 | 261 |
MS.gene002057.t1 | MTR_2g094570 | 39.152 | 401 | 179 | 12 | 12 | 358 | 10 | 399 | 8.34e-80 | 261 |
MS.gene002057.t1 | MTR_2g094570 | 39.152 | 401 | 179 | 12 | 12 | 358 | 66 | 455 | 2.12e-79 | 262 |
MS.gene002057.t1 | MTR_4g058930 | 36.740 | 411 | 191 | 11 | 4 | 355 | 3 | 403 | 4.14e-76 | 251 |
MS.gene002057.t1 | MTR_4g058930 | 36.740 | 411 | 191 | 11 | 4 | 355 | 3 | 403 | 5.24e-76 | 251 |
MS.gene002057.t1 | MTR_1g064430 | 35.075 | 402 | 191 | 11 | 12 | 353 | 26 | 417 | 7.26e-74 | 246 |
MS.gene002057.t1 | MTR_1g094960 | 38.035 | 397 | 186 | 13 | 13 | 358 | 19 | 406 | 1.01e-73 | 244 |
MS.gene002057.t1 | MTR_1g064430 | 35.075 | 402 | 191 | 11 | 12 | 353 | 39 | 430 | 1.21e-73 | 245 |
MS.gene002057.t1 | MTR_7g101280 | 35.507 | 414 | 191 | 15 | 10 | 358 | 28 | 430 | 6.81e-68 | 229 |
MS.gene002057.t1 | MTR_0041s0110 | 35.507 | 414 | 191 | 15 | 10 | 358 | 28 | 430 | 6.81e-68 | 229 |
MS.gene002057.t1 | MTR_7g101275 | 39.423 | 312 | 158 | 12 | 23 | 316 | 2 | 300 | 9.22e-58 | 196 |
MS.gene002057.t1 | MTR_5g062970 | 49.268 | 205 | 93 | 4 | 13 | 214 | 38 | 234 | 3.96e-56 | 186 |
MS.gene002057.t1 | MTR_8g100050 | 32.398 | 392 | 247 | 9 | 13 | 391 | 59 | 445 | 2.84e-51 | 185 |
MS.gene002057.t1 | MTR_0041s0120 | 35.168 | 327 | 173 | 11 | 23 | 321 | 2 | 317 | 4.93e-51 | 179 |
MS.gene002057.t1 | MTR_8g100050 | 32.398 | 392 | 247 | 9 | 13 | 391 | 59 | 445 | 9.22e-51 | 184 |
MS.gene002057.t1 | MTR_8g079492 | 33.429 | 350 | 217 | 8 | 13 | 349 | 23 | 369 | 3.69e-48 | 177 |
MS.gene002057.t1 | MTR_8g079492 | 33.429 | 350 | 217 | 8 | 13 | 349 | 23 | 369 | 3.77e-48 | 177 |
MS.gene002057.t1 | MTR_4g124900 | 33.333 | 354 | 209 | 10 | 10 | 348 | 20 | 361 | 3.88e-48 | 178 |
MS.gene002057.t1 | MTR_4g124900 | 33.333 | 354 | 209 | 10 | 10 | 348 | 20 | 361 | 4.53e-48 | 178 |
MS.gene002057.t1 | MTR_2g014770 | 30.747 | 348 | 205 | 9 | 13 | 337 | 53 | 387 | 2.07e-47 | 173 |
MS.gene002057.t1 | MTR_2g018690 | 32.670 | 352 | 218 | 8 | 13 | 349 | 23 | 370 | 3.00e-47 | 175 |
MS.gene002057.t1 | MTR_2g014770 | 30.747 | 348 | 205 | 9 | 13 | 337 | 53 | 387 | 4.11e-47 | 173 |
MS.gene002057.t1 | MTR_2g043250 | 32.768 | 354 | 211 | 10 | 10 | 348 | 20 | 361 | 4.28e-47 | 175 |
MS.gene002057.t1 | MTR_3g064050 | 31.842 | 380 | 239 | 8 | 13 | 379 | 26 | 398 | 5.49e-47 | 174 |
MS.gene002057.t1 | MTR_5g076270 | 32.000 | 350 | 223 | 7 | 13 | 349 | 24 | 371 | 6.17e-46 | 171 |
MS.gene002057.t1 | MTR_2g005240 | 32.500 | 360 | 218 | 9 | 13 | 356 | 23 | 373 | 3.63e-45 | 167 |
MS.gene002057.t1 | MTR_1g024025 | 33.529 | 340 | 207 | 9 | 13 | 338 | 43 | 377 | 8.78e-45 | 168 |
MS.gene002057.t1 | MTR_4g088210 | 32.044 | 362 | 196 | 11 | 8 | 337 | 33 | 376 | 6.62e-44 | 164 |
MS.gene002057.t1 | MTR_4g088210 | 32.044 | 362 | 196 | 11 | 8 | 337 | 33 | 376 | 8.91e-44 | 164 |
MS.gene002057.t1 | MTR_8g101360 | 32.479 | 351 | 217 | 10 | 5 | 340 | 23 | 368 | 4.50e-43 | 163 |
MS.gene002057.t1 | MTR_4g021580 | 30.055 | 366 | 237 | 9 | 13 | 365 | 19 | 378 | 1.66e-41 | 156 |
MS.gene002057.t1 | MTR_4g021580 | 30.055 | 366 | 237 | 9 | 13 | 365 | 19 | 378 | 1.95e-41 | 157 |
MS.gene002057.t1 | MTR_2g093740 | 31.412 | 347 | 212 | 7 | 13 | 337 | 56 | 398 | 5.25e-41 | 155 |
MS.gene002057.t1 | MTR_2g093740 | 31.412 | 347 | 212 | 7 | 13 | 337 | 56 | 398 | 7.93e-41 | 155 |
MS.gene002057.t1 | MTR_2g093740 | 31.412 | 347 | 212 | 7 | 13 | 337 | 56 | 398 | 9.84e-41 | 155 |
MS.gene002057.t1 | MTR_8g027440 | 30.814 | 344 | 217 | 9 | 13 | 343 | 29 | 364 | 1.17e-39 | 152 |
MS.gene002057.t1 | MTR_7g062540 | 28.647 | 377 | 243 | 9 | 13 | 373 | 14 | 380 | 1.45e-39 | 151 |
MS.gene002057.t1 | MTR_4g060460 | 28.894 | 398 | 247 | 10 | 13 | 388 | 54 | 437 | 3.31e-38 | 148 |
MS.gene002057.t1 | MTR_2g093740 | 30.278 | 360 | 212 | 8 | 13 | 337 | 56 | 411 | 1.07e-37 | 146 |
MS.gene002057.t1 | MTR_4g060460 | 30.435 | 368 | 228 | 10 | 13 | 356 | 54 | 417 | 1.31e-37 | 146 |
MS.gene002057.t1 | MTR_2g093740 | 30.278 | 360 | 212 | 8 | 13 | 337 | 56 | 411 | 1.52e-37 | 146 |
MS.gene002057.t1 | MTR_2g093740 | 30.278 | 360 | 212 | 8 | 13 | 337 | 56 | 411 | 1.55e-37 | 146 |
MS.gene002057.t1 | MTR_8g079492 | 33.448 | 290 | 172 | 8 | 76 | 349 | 3 | 287 | 2.67e-36 | 142 |
MS.gene002057.t1 | MTR_5g046120 | 58.333 | 120 | 40 | 6 | 51 | 165 | 9 | 123 | 8.63e-33 | 121 |
MS.gene002057.t1 | MTR_5g060770 | 35.461 | 282 | 119 | 12 | 66 | 337 | 8 | 236 | 7.45e-32 | 125 |
MS.gene002057.t1 | MTR_8g446900 | 28.975 | 283 | 181 | 8 | 67 | 337 | 14 | 288 | 1.27e-26 | 111 |
MS.gene002057.t1 | MTR_2g093740 | 31.799 | 239 | 149 | 5 | 117 | 343 | 38 | 274 | 3.85e-26 | 112 |
MS.gene002057.t1 | MTR_2g093740 | 32.189 | 233 | 144 | 5 | 117 | 337 | 38 | 268 | 4.40e-26 | 112 |
MS.gene002057.t1 | MTR_5g062960 | 44.295 | 149 | 65 | 7 | 239 | 375 | 1 | 143 | 1.10e-24 | 101 |
MS.gene002057.t1 | MTR_2g093740 | 30.488 | 246 | 144 | 6 | 117 | 337 | 38 | 281 | 4.44e-23 | 102 |
MS.gene002057.t1 | MTR_2g093740 | 30.488 | 246 | 144 | 6 | 117 | 337 | 38 | 281 | 4.77e-23 | 102 |
MS.gene002057.t1 | MTR_5g460910 | 30.169 | 295 | 118 | 14 | 56 | 338 | 14 | 232 | 3.08e-19 | 89.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002057.t1 | AT1G77850 | 37.653 | 409 | 198 | 11 | 9 | 370 | 15 | 413 | 3.00e-85 | 273 |
MS.gene002057.t1 | AT1G77850 | 37.653 | 409 | 198 | 11 | 9 | 370 | 15 | 413 | 4.75e-85 | 273 |
MS.gene002057.t1 | AT4G30080 | 37.157 | 401 | 187 | 13 | 12 | 358 | 18 | 407 | 1.21e-73 | 244 |
MS.gene002057.t1 | AT2G28350 | 35.749 | 414 | 195 | 12 | 5 | 358 | 2 | 404 | 2.55e-72 | 241 |
MS.gene002057.t1 | AT2G28350 | 35.749 | 414 | 195 | 12 | 5 | 358 | 2 | 404 | 2.65e-72 | 241 |
MS.gene002057.t1 | AT4G23980 | 33.731 | 335 | 208 | 6 | 13 | 337 | 12 | 342 | 1.32e-49 | 179 |
MS.gene002057.t1 | AT4G23980 | 33.731 | 335 | 208 | 6 | 13 | 337 | 12 | 342 | 1.38e-49 | 179 |
MS.gene002057.t1 | AT5G37020 | 31.806 | 371 | 238 | 7 | 13 | 370 | 22 | 390 | 2.28e-48 | 177 |
MS.gene002057.t1 | AT5G37020 | 31.806 | 371 | 238 | 7 | 13 | 370 | 22 | 390 | 2.71e-48 | 177 |
MS.gene002057.t1 | AT1G30330 | 33.428 | 353 | 214 | 9 | 13 | 349 | 25 | 372 | 3.51e-47 | 175 |
MS.gene002057.t1 | AT1G30330 | 33.428 | 353 | 214 | 9 | 13 | 349 | 25 | 372 | 3.51e-47 | 175 |
MS.gene002057.t1 | AT1G30330 | 33.428 | 353 | 214 | 9 | 13 | 349 | 23 | 370 | 3.63e-47 | 175 |
MS.gene002057.t1 | AT5G62000 | 32.099 | 405 | 255 | 9 | 13 | 403 | 61 | 459 | 5.80e-47 | 174 |
MS.gene002057.t1 | AT5G62000 | 32.099 | 405 | 255 | 9 | 13 | 403 | 61 | 459 | 6.48e-47 | 174 |
MS.gene002057.t1 | AT5G62000 | 32.099 | 405 | 255 | 9 | 13 | 403 | 61 | 459 | 6.48e-47 | 174 |
MS.gene002057.t1 | AT5G62000 | 32.099 | 405 | 255 | 9 | 13 | 403 | 61 | 459 | 6.48e-47 | 174 |
MS.gene002057.t1 | AT5G62000 | 32.099 | 405 | 255 | 9 | 13 | 403 | 61 | 459 | 6.48e-47 | 174 |
MS.gene002057.t1 | AT5G20730 | 32.687 | 361 | 217 | 9 | 3 | 348 | 14 | 363 | 7.88e-47 | 174 |
MS.gene002057.t1 | AT5G20730 | 32.687 | 361 | 217 | 9 | 3 | 348 | 14 | 363 | 1.03e-46 | 174 |
MS.gene002057.t1 | AT2G33860 | 31.988 | 347 | 202 | 9 | 13 | 337 | 54 | 388 | 1.51e-46 | 170 |
MS.gene002057.t1 | AT2G46530 | 31.421 | 366 | 229 | 9 | 13 | 364 | 21 | 378 | 2.26e-46 | 170 |
MS.gene002057.t1 | AT5G20730 | 32.687 | 361 | 216 | 10 | 3 | 348 | 14 | 362 | 3.06e-46 | 172 |
MS.gene002057.t1 | AT2G46530 | 31.421 | 366 | 229 | 9 | 13 | 364 | 42 | 399 | 3.69e-46 | 169 |
MS.gene002057.t1 | AT1G34310 | 33.237 | 346 | 200 | 9 | 8 | 337 | 22 | 352 | 4.83e-45 | 166 |
MS.gene002057.t1 | AT3G61830 | 31.680 | 363 | 218 | 10 | 13 | 356 | 25 | 376 | 4.94e-45 | 166 |
MS.gene002057.t1 | AT1G19850 | 34.294 | 347 | 202 | 11 | 10 | 338 | 40 | 378 | 2.30e-44 | 167 |
MS.gene002057.t1 | AT1G19850 | 34.294 | 347 | 202 | 11 | 10 | 338 | 51 | 389 | 2.36e-44 | 167 |
MS.gene002057.t1 | AT1G34390 | 32.659 | 346 | 200 | 10 | 8 | 337 | 22 | 350 | 8.41e-44 | 162 |
MS.gene002057.t1 | AT1G35520 | 32.174 | 345 | 215 | 8 | 3 | 337 | 17 | 352 | 1.08e-43 | 162 |
MS.gene002057.t1 | AT1G19220 | 30.833 | 360 | 220 | 10 | 4 | 348 | 16 | 361 | 2.09e-43 | 164 |
MS.gene002057.t1 | AT5G60450 | 31.445 | 353 | 212 | 8 | 8 | 337 | 36 | 381 | 2.19e-43 | 163 |
MS.gene002057.t1 | AT5G60450 | 31.609 | 348 | 208 | 8 | 13 | 337 | 65 | 405 | 5.81e-43 | 162 |
MS.gene002057.t1 | AT1G35540 | 32.456 | 342 | 208 | 10 | 8 | 337 | 22 | 352 | 2.61e-42 | 159 |
MS.gene002057.t1 | AT1G35240 | 32.353 | 340 | 211 | 8 | 8 | 337 | 22 | 352 | 3.10e-42 | 158 |
MS.gene002057.t1 | AT1G34410 | 31.765 | 340 | 213 | 8 | 8 | 337 | 22 | 352 | 1.52e-41 | 156 |
MS.gene002057.t1 | AT1G59750 | 31.339 | 351 | 222 | 9 | 13 | 350 | 22 | 366 | 1.69e-40 | 154 |
MS.gene002057.t1 | AT1G59750 | 31.339 | 351 | 222 | 9 | 13 | 350 | 22 | 366 | 2.25e-40 | 154 |
MS.gene002057.t1 | AT1G59750 | 31.339 | 351 | 222 | 9 | 13 | 350 | 22 | 366 | 2.25e-40 | 154 |
MS.gene002057.t1 | AT1G59750 | 31.339 | 351 | 222 | 9 | 13 | 350 | 22 | 366 | 2.46e-40 | 154 |
MS.gene002057.t1 | AT1G34170 | 30.372 | 349 | 222 | 9 | 1 | 337 | 13 | 352 | 4.96e-40 | 150 |
MS.gene002057.t1 | AT1G34170 | 29.942 | 344 | 204 | 8 | 1 | 337 | 13 | 326 | 1.13e-37 | 144 |
MS.gene002057.t1 | AT1G34170 | 29.942 | 344 | 204 | 8 | 1 | 337 | 13 | 326 | 4.11e-37 | 143 |
MS.gene002057.t1 | AT3G61830 | 31.392 | 309 | 182 | 10 | 67 | 356 | 28 | 325 | 6.29e-32 | 128 |
MS.gene002057.t1 | AT5G37020 | 32.584 | 267 | 165 | 7 | 117 | 370 | 31 | 295 | 2.98e-31 | 127 |
MS.gene002057.t1 | AT1G43950 | 34.259 | 216 | 121 | 5 | 8 | 217 | 22 | 222 | 5.73e-30 | 116 |
MS.gene002057.t1 | AT2G33860 | 32.479 | 234 | 141 | 6 | 117 | 337 | 2 | 231 | 5.95e-30 | 121 |
MS.gene002057.t1 | AT2G46530 | 31.679 | 262 | 164 | 7 | 114 | 364 | 34 | 291 | 3.45e-29 | 120 |
Find 100 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATCTCGTACTTCTAATTTA+TGG | 0.108193 | 2.3:+75730329 | MS.gene002057:CDS |
TTTGAATATCGTAGGTTAAT+TGG | 0.128409 | 2.3:+75731911 | MS.gene002057:intron |
GATGGTTCAATTATGTTATT+TGG | 0.174464 | 2.3:+75732270 | MS.gene002057:CDS |
GCACATGTGTGCCAAATTTC+TGG | 0.215696 | 2.3:-75729449 | None:intergenic |
CGCATGTGCGTCCAGAAATT+TGG | 0.217939 | 2.3:+75729438 | MS.gene002057:CDS |
TTCATCTTAACTCTCATTCT+AGG | 0.234993 | 2.3:-75730259 | None:intergenic |
GATTGGCAACCTCTTCTTTA+GGG | 0.275578 | 2.3:-75729715 | None:intergenic |
AGATTGGCAACCTCTTCTTT+AGG | 0.275924 | 2.3:-75729716 | None:intergenic |
TAATTTATGGCGCATGCTTC+AGG | 0.288610 | 2.3:+75730342 | MS.gene002057:CDS |
ATAGAGATTGTCCCTTGATA+TGG | 0.294890 | 2.3:-75730304 | None:intergenic |
AGATGGACATCGTTGGTTAT+TGG | 0.309930 | 2.3:-75729686 | None:intergenic |
TTGAATATCGTAGGTTAATT+GGG | 0.314702 | 2.3:+75731912 | MS.gene002057:intron |
TGCCCAACTAAGTGATAAAA+AGG | 0.319098 | 2.3:+75732056 | MS.gene002057:CDS |
CTGTTCGTTACCGACGTTCA+TGG | 0.320691 | 2.3:+75729884 | MS.gene002057:CDS |
TTCATCGCGGTTGTTGAGAT+TGG | 0.361556 | 2.3:-75729732 | None:intergenic |
TAAACTCTTGAATGCAACTT+TGG | 0.370692 | 2.3:-75729491 | None:intergenic |
GATATATAACATGTTTCTCT+TGG | 0.384809 | 2.3:-75729945 | None:intergenic |
AATGGAATTCGTTTGTTAAG+AGG | 0.398429 | 2.3:+75729972 | MS.gene002057:CDS |
CAGAGGAGTTCAAAATAATA+TGG | 0.402834 | 2.3:-75732200 | None:intergenic |
TCAACGGGAAAGTTATTTGT+TGG | 0.427846 | 2.3:+75730037 | MS.gene002057:CDS |
CAACGGGAAAGTTATTTGTT+GGG | 0.431447 | 2.3:+75730038 | MS.gene002057:CDS |
GCAGTTTGTTGCAGCGGCGG+CGG | 0.440577 | 2.3:+75730075 | MS.gene002057:CDS |
TGAGTTGGAGAAGGCAGTAA+TGG | 0.441158 | 2.3:+75730111 | MS.gene002057:CDS |
TCATCTTAACTCTCATTCTA+GGG | 0.445548 | 2.3:-75730258 | None:intergenic |
ATGAATCAATGAAGATTCAA+TGG | 0.450458 | 2.3:+75730233 | MS.gene002057:CDS |
TGAGTCTTTCATGAAAATAA+CGG | 0.452973 | 2.3:-75730017 | None:intergenic |
TGAAGACTGATAAATCTTCA+AGG | 0.454632 | 2.3:+75730278 | MS.gene002057:CDS |
CAGGTGTTGAGACGAGGATT+CGG | 0.457588 | 2.3:-75729864 | None:intergenic |
TTGGGATGAATTTCAAGTCT+CGG | 0.458166 | 2.3:+75731930 | MS.gene002057:CDS |
ACTATCCTCGAGGGGATGAT+TGG | 0.466368 | 2.3:+75730179 | MS.gene002057:CDS |
AGTCAACCCGTGGTGGGTTG+AGG | 0.468552 | 2.3:+75731966 | MS.gene002057:CDS |
CACGCAGTTTGTTGCAGCGG+CGG | 0.472211 | 2.3:+75730072 | MS.gene002057:CDS |
CATGAACGTCGGTAACGAAC+AGG | 0.475779 | 2.3:-75729883 | None:intergenic |
ATATATAACATGTTTCTCTT+GGG | 0.481990 | 2.3:-75729944 | None:intergenic |
TAGAGATTGTCCCTTGATAT+GGG | 0.482488 | 2.3:-75730303 | None:intergenic |
AAAAGAGTGTGTGTGGGTAA+TGG | 0.489755 | 2.3:-75729564 | None:intergenic |
TCTCATATCAAGGGAGATGA+TGG | 0.490070 | 2.3:+75732330 | MS.gene002057:CDS |
CACCACGGGTTGACTCGTCT+TGG | 0.505317 | 2.3:-75731958 | None:intergenic |
TGCCGATCCTCACACGGATG+AGG | 0.509768 | 2.3:+75729640 | MS.gene002057:CDS |
TCTTCAAGGATCCCATATCA+AGG | 0.512818 | 2.3:+75730292 | MS.gene002057:CDS |
AGTTATTTGTTGGGATTCGC+AGG | 0.513561 | 2.3:+75730047 | MS.gene002057:CDS |
AAGCCGCGGGAAGACATTAT+CGG | 0.516617 | 2.3:-75729831 | None:intergenic |
AGTAATGGAGGCATTGAAGT+TGG | 0.517015 | 2.3:+75730126 | MS.gene002057:CDS |
GACCTCATCCGTGTGAGGAT+CGG | 0.528604 | 2.3:-75729642 | None:intergenic |
TTTCACAATTCTCATATCAA+GGG | 0.529587 | 2.3:+75732321 | MS.gene002057:CDS |
ACATGTTATATATCTCTGAA+TGG | 0.530162 | 2.3:+75729954 | MS.gene002057:CDS |
AGCGGCGGCGGAGCAGAAGA+AGG | 0.532222 | 2.3:+75730087 | MS.gene002057:CDS |
AAGAGGAAGAAACTCGTGGC+TGG | 0.538632 | 2.3:+75729989 | MS.gene002057:CDS |
GGAGCAGAAGAAGGATGAGT+TGG | 0.543711 | 2.3:+75730096 | MS.gene002057:CDS |
GGTGATACTTTATCATGTAT+AGG | 0.550061 | 2.3:-75732171 | None:intergenic |
TGGGAAACCCGCGGCAGACA+TGG | 0.563883 | 2.3:-75729925 | None:intergenic |
AAATTGTTTACTATCCTCGA+GGG | 0.568194 | 2.3:+75730170 | MS.gene002057:CDS |
CGGCACAAAAGCGAGGTATG+TGG | 0.571206 | 2.3:-75729811 | None:intergenic |
GAAGAAGGATGAGTTGGAGA+AGG | 0.573545 | 2.3:+75730102 | MS.gene002057:CDS |
AGAGTGTGTGTGGGTAATGG+AGG | 0.575190 | 2.3:-75729561 | None:intergenic |
GAGACGAGGATTCGGCCTCT+AGG | 0.578409 | 2.3:-75729856 | None:intergenic |
ATTTCTGGACGCACATGCGA+TGG | 0.580120 | 2.3:-75729434 | None:intergenic |
TCTTGAAAACCCTAAAGAAG+AGG | 0.581476 | 2.3:+75729706 | MS.gene002057:CDS |
TCTCCTTGCCGATCCTCACA+CGG | 0.588085 | 2.3:+75729634 | MS.gene002057:CDS |
CTTCCCGCGGCTTGACCTAG+AGG | 0.588102 | 2.3:+75729841 | MS.gene002057:CDS |
AATGGAGGCATTGAAGTTGG+CGG | 0.590740 | 2.3:+75730129 | MS.gene002057:CDS |
AATGAGATCACTTCAACGGA+AGG | 0.592309 | 2.3:+75732114 | MS.gene002057:CDS |
GAAGTTGGCGGAAGAGAACA+AGG | 0.600106 | 2.3:+75730141 | MS.gene002057:CDS |
GTTCTGATGTTAACAATGCT+CGG | 0.602948 | 2.3:+75729783 | MS.gene002057:CDS |
AAATAACCTCAACCCACCAC+GGG | 0.608942 | 2.3:-75731972 | None:intergenic |
CTTCAAGGATCCCATATCAA+GGG | 0.609531 | 2.3:+75730293 | MS.gene002057:CDS |
GAGACGATACAAGGAGTGAA+AGG | 0.609567 | 2.3:-75729602 | None:intergenic |
TTTGTAGAAAAGAGTGTGTG+TGG | 0.609647 | 2.3:-75729571 | None:intergenic |
GAACACGCAGTTTGTTGCAG+CGG | 0.616426 | 2.3:+75730069 | MS.gene002057:CDS |
TTTGAATGAGATCACTTCAA+CGG | 0.618869 | 2.3:+75732110 | MS.gene002057:CDS |
GTGTTGCAATTGTGAGTCGA+AGG | 0.619072 | 2.3:-75732234 | None:intergenic |
CGGCCTCTAGGTCAAGCCGC+GGG | 0.620797 | 2.3:-75729844 | None:intergenic |
CGAAGGAAACTTTGTCTCAG+AGG | 0.621557 | 2.3:-75732217 | None:intergenic |
TCAACAGCTGAGACGATACA+AGG | 0.622390 | 2.3:-75729611 | None:intergenic |
GAAATTGTTTACTATCCTCG+AGG | 0.624214 | 2.3:+75730169 | MS.gene002057:CDS |
GTTGGAGAAGGCAGTAATGG+AGG | 0.624776 | 2.3:+75730114 | MS.gene002057:CDS |
ATGAGATCACTTCAACGGAA+GGG | 0.630141 | 2.3:+75732115 | MS.gene002057:CDS |
GTAATGGAGGAAGAAGAAGA+AGG | 0.639327 | 2.3:-75729548 | None:intergenic |
AGAGTTTATTATTTCCCACA+AGG | 0.642714 | 2.3:+75729506 | MS.gene002057:CDS |
AACGAACAGGTGTTGAGACG+AGG | 0.644655 | 2.3:-75729870 | None:intergenic |
CAAGACGAGTCAACCCGTGG+TGG | 0.644679 | 2.3:+75731959 | MS.gene002057:CDS |
TTGTGAAAATTGCTTACATG+AGG | 0.646619 | 2.3:-75732306 | None:intergenic |
AAGACGAGTCAACCCGTGGT+GGG | 0.646955 | 2.3:+75731960 | MS.gene002057:CDS |
TCGGCCTCTAGGTCAAGCCG+CGG | 0.648171 | 2.3:-75729845 | None:intergenic |
GAAATAACCTCAACCCACCA+CGG | 0.649182 | 2.3:-75731973 | None:intergenic |
TGGTTGCTTCTGAACAGACA+TGG | 0.659994 | 2.3:-75729414 | None:intergenic |
TGTTTCTCTTGGGAAACCCG+CGG | 0.663878 | 2.3:-75729934 | None:intergenic |
ACAAAGACCTCATCCGTGTG+AGG | 0.664295 | 2.3:-75729647 | None:intergenic |
TTCCAAGACGAGTCAACCCG+TGG | 0.669719 | 2.3:+75731956 | MS.gene002057:CDS |
TTCAAAATAATATGGCTGTG+AGG | 0.673161 | 2.3:-75732192 | None:intergenic |
ACATTATCGGCACAAAAGCG+AGG | 0.676914 | 2.3:-75729818 | None:intergenic |
TTGTAGAAAAGAGTGTGTGT+GGG | 0.681947 | 2.3:-75729570 | None:intergenic |
TGTTAAGAGGAAGAAACTCG+TGG | 0.682365 | 2.3:+75729985 | MS.gene002057:CDS |
GTGCCGATAATGTCTTCCCG+CGG | 0.682542 | 2.3:+75729828 | MS.gene002057:CDS |
GATGATGGCTATAAGAGCTG+CGG | 0.682568 | 2.3:+75732345 | MS.gene002057:CDS |
TGAAACTTCACCATGAACGT+CGG | 0.683050 | 2.3:-75729894 | None:intergenic |
AATTGTTTACTATCCTCGAG+GGG | 0.689459 | 2.3:+75730171 | MS.gene002057:CDS |
CATCCGTGTGAGGATCGGCA+AGG | 0.710355 | 2.3:-75729637 | None:intergenic |
TCACACCAATCATCCCCTCG+AGG | 0.748749 | 2.3:-75730184 | None:intergenic |
CAAAAGAAACAACTTCATCG+CGG | 0.749390 | 2.3:-75729745 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GATTTTCTTAAATTTATTAT+CGG | - | chr2.3:75730489-75730508 | None:intergenic | 10.0% |
!! | ACGATATTCAAATAAAAAAA+TGG | - | chr2.3:75731903-75731922 | None:intergenic | 15.0% |
!! | CGTATATTTGAATATTTAAT+TGG | + | chr2.3:75730985-75731004 | MS.gene002057:intron | 15.0% |
!! | GTAAAAAAAAATAGATGTTA+AGG | - | chr2.3:75731075-75731094 | None:intergenic | 15.0% |
!! | TAGTTACTAACATTAAAAAA+AGG | - | chr2.3:75731032-75731051 | None:intergenic | 15.0% |
!!! | AGTTCTAAATTTTTTTGTTT+GGG | - | chr2.3:75732025-75732044 | None:intergenic | 15.0% |
!!! | ATAATTTCTTTTTCTTTTCT+TGG | + | chr2.3:75730366-75730385 | MS.gene002057:intron | 15.0% |
!!! | TAGTTCTAAATTTTTTTGTT+TGG | - | chr2.3:75732026-75732045 | None:intergenic | 15.0% |
!!! | TATTTTTTTTGGTATAAATC+AGG | + | chr2.3:75730644-75730663 | MS.gene002057:intron | 15.0% |
!!! | TTTTTTTATTTGAATATCGT+AGG | + | chr2.3:75731903-75731922 | MS.gene002057:intron | 15.0% |
!!! | TTTTTTTGTGGTATTTTTTT+TGG | + | chr2.3:75730633-75730652 | MS.gene002057:intron | 15.0% |
!! | ATAGTTAAATGACTCATTAA+AGG | + | chr2.3:75731696-75731715 | MS.gene002057:intron | 20.0% |
!! | ATATATAACATGTTTCTCTT+GGG | - | chr2.3:75729947-75729966 | None:intergenic | 20.0% |
!! | TCTAATTATAGATATAGCAT+TGG | - | chr2.3:75730718-75730737 | None:intergenic | 20.0% |
!! | TTTAACTATAGATGAAACTT+TGG | - | chr2.3:75731685-75731704 | None:intergenic | 20.0% |
!!! | AGACTTTATTTGAACAATAT+TGG | + | chr2.3:75731795-75731814 | MS.gene002057:intron | 20.0% |
!!! | GTTCTAAATTTTTTTGTTTG+GGG | - | chr2.3:75732024-75732043 | None:intergenic | 20.0% |
!!! | GTTGATAAATGATTTTTTTG+TGG | + | chr2.3:75730621-75730640 | MS.gene002057:intron | 20.0% |
!!! | TTCTAAATTTTTTTGTTTGG+GGG | - | chr2.3:75732023-75732042 | None:intergenic | 20.0% |
! | AAATGAAATGCAATATCGAT+TGG | - | chr2.3:75730929-75730948 | None:intergenic | 25.0% |
! | AACACCAAAAATTATAGTGA+TGG | + | chr2.3:75732252-75732271 | MS.gene002057:CDS | 25.0% |
! | ACATGTTATATATCTCTGAA+TGG | + | chr2.3:75729954-75729973 | MS.gene002057:CDS | 25.0% |
! | ATGAATCAATGAAGATTCAA+TGG | + | chr2.3:75730233-75730252 | MS.gene002057:CDS | 25.0% |
! | GATATATAACATGTTTCTCT+TGG | - | chr2.3:75729948-75729967 | None:intergenic | 25.0% |
! | GATGGTTCAATTATGTTATT+TGG | + | chr2.3:75732270-75732289 | MS.gene002057:CDS | 25.0% |
! | TATCTCGTACTTCTAATTTA+TGG | + | chr2.3:75730329-75730348 | MS.gene002057:CDS | 25.0% |
! | TGAGTCTTTCATGAAAATAA+CGG | - | chr2.3:75730020-75730039 | None:intergenic | 25.0% |
! | TTGAATATCGTAGGTTAATT+GGG | + | chr2.3:75731912-75731931 | MS.gene002057:intron | 25.0% |
! | TTTCACAATTCTCATATCAA+GGG | + | chr2.3:75732321-75732340 | MS.gene002057:CDS | 25.0% |
! | TTTGAATATCGTAGGTTAAT+TGG | + | chr2.3:75731911-75731930 | MS.gene002057:intron | 25.0% |
!! | GTCATATGAGATAGATTTTA+AGG | + | chr2.3:75731729-75731748 | MS.gene002057:intron | 25.0% |
!! | TATTTTCATGAAAGACTCAA+CGG | + | chr2.3:75730021-75730040 | MS.gene002057:CDS | 25.0% |
!! | TCGGTTAATTTACCAATTTT+GGG | + | chr2.3:75731568-75731587 | MS.gene002057:intron | 25.0% |
!! | TGAACCATCACTATAATTTT+TGG | - | chr2.3:75732259-75732278 | None:intergenic | 25.0% |
!! | TTCCTTTTTATCACTTAGTT+GGG | - | chr2.3:75732061-75732080 | None:intergenic | 25.0% |
!! | TTTCCTTTTTATCACTTAGT+TGG | - | chr2.3:75732062-75732081 | None:intergenic | 25.0% |
!! | TTTTCACAATTCTCATATCA+AGG | + | chr2.3:75732320-75732339 | MS.gene002057:CDS | 25.0% |
!!! | ATGAGATAGATTTTAAGGTT+AGG | + | chr2.3:75731734-75731753 | MS.gene002057:intron | 25.0% |
!!! | TGAGATAGATTTTAAGGTTA+GGG | + | chr2.3:75731735-75731754 | MS.gene002057:intron | 25.0% |
AAATTGTTTACTATCCTCGA+GGG | + | chr2.3:75730170-75730189 | MS.gene002057:CDS | 30.0% | |
AACATTAAAAAAAGGAGCGA+CGG | - | chr2.3:75731024-75731043 | None:intergenic | 30.0% | |
AATTCCTTCATACAACCATA+CGG | + | chr2.3:75731328-75731347 | MS.gene002057:intron | 30.0% | |
ACATTGAGACTTATCCTATA+GGG | - | chr2.3:75731515-75731534 | None:intergenic | 30.0% | |
ACTGTTAACCGTATAAAAAG+AGG | - | chr2.3:75731253-75731272 | None:intergenic | 30.0% | |
AGAGTTTATTATTTCCCACA+AGG | + | chr2.3:75729506-75729525 | MS.gene002057:CDS | 30.0% | |
ATACTAGATACTATGAAGCA+CGG | - | chr2.3:75730592-75730611 | None:intergenic | 30.0% | |
CAGAGGAGTTCAAAATAATA+TGG | - | chr2.3:75732203-75732222 | None:intergenic | 30.0% | |
CTGTAATAATCTCTCTATGT+GGG | - | chr2.3:75731147-75731166 | None:intergenic | 30.0% | |
CTGTTAACCGTATAAAAAGA+GGG | - | chr2.3:75731252-75731271 | None:intergenic | 30.0% | |
GGTGATACTTTATCATGTAT+AGG | - | chr2.3:75732174-75732193 | None:intergenic | 30.0% | |
GTGTTTCATAGCTAGATAAT+TGG | - | chr2.3:75730414-75730433 | None:intergenic | 30.0% | |
GTTTGACATCAATGCTTATT+GGG | + | chr2.3:75731410-75731429 | MS.gene002057:intron | 30.0% | |
TAAACTCTTGAATGCAACTT+TGG | - | chr2.3:75729494-75729513 | None:intergenic | 30.0% | |
TAAATAGCAACTCCCAAAAT+TGG | - | chr2.3:75731583-75731602 | None:intergenic | 30.0% | |
TACATTGAGACTTATCCTAT+AGG | - | chr2.3:75731516-75731535 | None:intergenic | 30.0% | |
TATTAAACGTCTCCTAATGT+CGG | - | chr2.3:75730561-75730580 | None:intergenic | 30.0% | |
TCATCTTAACTCTCATTCTA+GGG | - | chr2.3:75730261-75730280 | None:intergenic | 30.0% | |
TCTGTAATAATCTCTCTATG+TGG | - | chr2.3:75731148-75731167 | None:intergenic | 30.0% | |
TGAAGACTGATAAATCTTCA+AGG | + | chr2.3:75730278-75730297 | MS.gene002057:CDS | 30.0% | |
TGGTTGTATGAAGGAATTAT+AGG | - | chr2.3:75731326-75731345 | None:intergenic | 30.0% | |
TTCAAAATAATATGGCTGTG+AGG | - | chr2.3:75732195-75732214 | None:intergenic | 30.0% | |
TTCATCTTAACTCTCATTCT+AGG | - | chr2.3:75730262-75730281 | None:intergenic | 30.0% | |
TTGTGAAAATTGCTTACATG+AGG | - | chr2.3:75732309-75732328 | None:intergenic | 30.0% | |
TTTGAATGAGATCACTTCAA+CGG | + | chr2.3:75732110-75732129 | MS.gene002057:CDS | 30.0% | |
! | AATCATTCCTCTTTTCATTG+TGG | - | chr2.3:75731203-75731222 | None:intergenic | 30.0% |
! | AATGGAATTCGTTTGTTAAG+AGG | + | chr2.3:75729972-75729991 | MS.gene002057:CDS | 30.0% |
! | ATTTTCATGAAAGACTCAAC+GGG | + | chr2.3:75730022-75730041 | MS.gene002057:CDS | 30.0% |
! | GTCGGTTAATTTACCAATTT+TGG | + | chr2.3:75731567-75731586 | MS.gene002057:intron | 30.0% |
! | TCATAAAACCTCGTTTGTTT+TGG | + | chr2.3:75731176-75731195 | MS.gene002057:intron | 30.0% |
!! | AAAACAAACGAGGTTTTATG+AGG | - | chr2.3:75731177-75731196 | None:intergenic | 30.0% |
!! | AATAAGCATTGATGTCAAAC+GGG | - | chr2.3:75731410-75731429 | None:intergenic | 30.0% |
!! | CAATAAGCATTGATGTCAAA+CGG | - | chr2.3:75731411-75731430 | None:intergenic | 30.0% |
!!! | AATTTTTTTGTTTGGGGGAA+TGG | - | chr2.3:75732018-75732037 | None:intergenic | 30.0% |
!!! | ATGCAACTTTGGAATTTTGA+CGG | - | chr2.3:75729483-75729502 | None:intergenic | 30.0% |
AATTGTTTACTATCCTCGAG+GGG | + | chr2.3:75730171-75730190 | MS.gene002057:CDS | 35.0% | |
ACAACCAATTTAACACCGTA+TGG | - | chr2.3:75731346-75731365 | None:intergenic | 35.0% | |
ATAGAGATTGTCCCTTGATA+TGG | - | chr2.3:75730307-75730326 | None:intergenic | 35.0% | |
CAAAAGAAACAACTTCATCG+CGG | - | chr2.3:75729748-75729767 | None:intergenic | 35.0% | |
CAACGGGAAAGTTATTTGTT+GGG | + | chr2.3:75730038-75730057 | MS.gene002057:CDS | 35.0% | |
CGTTTGACATCAATGCTTAT+TGG | + | chr2.3:75731409-75731428 | MS.gene002057:intron | 35.0% | |
GAAATTGTTTACTATCCTCG+AGG | + | chr2.3:75730169-75730188 | MS.gene002057:CDS | 35.0% | |
GAGAACAAGTATGTTACTGT+CGG | + | chr2.3:75731549-75731568 | MS.gene002057:intron | 35.0% | |
GTTCTGATGTTAACAATGCT+CGG | + | chr2.3:75729783-75729802 | MS.gene002057:CDS | 35.0% | |
TAGAGATTGTCCCTTGATAT+GGG | - | chr2.3:75730306-75730325 | None:intergenic | 35.0% | |
TCAAAGAGCAGTAACTAACT+AGG | - | chr2.3:75731459-75731478 | None:intergenic | 35.0% | |
TCAACGGGAAAGTTATTTGT+TGG | + | chr2.3:75730037-75730056 | MS.gene002057:CDS | 35.0% | |
TCTTGAAAACCCTAAAGAAG+AGG | + | chr2.3:75729706-75729725 | MS.gene002057:CDS | 35.0% | |
TGAACAATATTGGTGCATTG+TGG | + | chr2.3:75731805-75731824 | MS.gene002057:intron | 35.0% | |
TGCCCAACTAAGTGATAAAA+AGG | + | chr2.3:75732056-75732075 | MS.gene002057:CDS | 35.0% | |
TTCAGTAGAATCGTATGTGT+CGG | + | chr2.3:75730515-75730534 | MS.gene002057:intron | 35.0% | |
! | ACAACCATACGGTGTTAAAT+TGG | + | chr2.3:75731339-75731358 | MS.gene002057:intron | 35.0% |
! | GTTCACACCCTCTTTTTATA+CGG | + | chr2.3:75731242-75731261 | MS.gene002057:intron | 35.0% |
! | TGATTGGTGTGATTTTGTAG+TGG | + | chr2.3:75730195-75730214 | MS.gene002057:CDS | 35.0% |
! | TGCAATATCGATTGGTGTAA+TGG | - | chr2.3:75730921-75730940 | None:intergenic | 35.0% |
! | TGTCAAACGGGTATTTTCAT+TGG | - | chr2.3:75731398-75731417 | None:intergenic | 35.0% |
! | TTGGGATGAATTTCAAGTCT+CGG | + | chr2.3:75731930-75731949 | MS.gene002057:CDS | 35.0% |
! | TTGTAGAAAAGAGTGTGTGT+GGG | - | chr2.3:75729573-75729592 | None:intergenic | 35.0% |
! | TTTGTAGAAAAGAGTGTGTG+TGG | - | chr2.3:75729574-75729593 | None:intergenic | 35.0% |
! | TTTTGGTCCACAATGAAAAG+AGG | + | chr2.3:75731193-75731212 | MS.gene002057:intron | 35.0% |
!!! | CTTCTTTAGGGTTTTCAAGA+TGG | - | chr2.3:75729706-75729725 | None:intergenic | 35.0% |
AACACACTCACAAACACACA+CGG | + | chr2.3:75730429-75730448 | MS.gene002057:intron | 40.0% | |
AACACCGTATGGTTGTATGA+AGG | - | chr2.3:75731335-75731354 | None:intergenic | 40.0% | |
AATGAGATCACTTCAACGGA+AGG | + | chr2.3:75732114-75732133 | MS.gene002057:CDS | 40.0% | |
ACATCCTCACTCTTGCAAAA+AGG | - | chr2.3:75730861-75730880 | None:intergenic | 40.0% | |
AGATTGGCAACCTCTTCTTT+AGG | - | chr2.3:75729719-75729738 | None:intergenic | 40.0% | |
ATGAGATCACTTCAACGGAA+GGG | + | chr2.3:75732115-75732134 | MS.gene002057:CDS | 40.0% | |
ATTGTGGACCAAAACAAACG+AGG | - | chr2.3:75731187-75731206 | None:intergenic | 40.0% | |
CTAACTAGGATCGTCTCTAA+TGG | - | chr2.3:75731445-75731464 | None:intergenic | 40.0% | |
CTTCAAGGATCCCATATCAA+GGG | + | chr2.3:75730293-75730312 | MS.gene002057:CDS | 40.0% | |
GATTGGCAACCTCTTCTTTA+GGG | - | chr2.3:75729718-75729737 | None:intergenic | 40.0% | |
TAATTTATGGCGCATGCTTC+AGG | + | chr2.3:75730342-75730361 | MS.gene002057:CDS | 40.0% | |
TATATTGCTTCGTGCCCTAT+AGG | + | chr2.3:75731498-75731517 | MS.gene002057:intron | 40.0% | |
TATTGGTGCATTGTGGCTAA+TGG | + | chr2.3:75731812-75731831 | MS.gene002057:intron | 40.0% | |
TCTCATATCAAGGGAGATGA+TGG | + | chr2.3:75732330-75732349 | MS.gene002057:CDS | 40.0% | |
TCTTCAAGGATCCCATATCA+AGG | + | chr2.3:75730292-75730311 | MS.gene002057:CDS | 40.0% | |
TGAAACTTCACCATGAACGT+CGG | - | chr2.3:75729897-75729916 | None:intergenic | 40.0% | |
TGTTAAGAGGAAGAAACTCG+TGG | + | chr2.3:75729985-75730004 | MS.gene002057:CDS | 40.0% | |
! | AAAAGAGTGTGTGTGGGTAA+TGG | - | chr2.3:75729567-75729586 | None:intergenic | 40.0% |
! | AGATGGACATCGTTGGTTAT+TGG | - | chr2.3:75729689-75729708 | None:intergenic | 40.0% |
! | AGTTATTTGTTGGGATTCGC+AGG | + | chr2.3:75730047-75730066 | MS.gene002057:CDS | 40.0% |
! | GCATTGTGGCTAATGGTTTT+GGG | + | chr2.3:75731819-75731838 | MS.gene002057:intron | 40.0% |
! | GTAATGGAGGAAGAAGAAGA+AGG | - | chr2.3:75729551-75729570 | None:intergenic | 40.0% |
! | TGCATTGTGGCTAATGGTTT+TGG | + | chr2.3:75731818-75731837 | MS.gene002057:intron | 40.0% |
! | TTTTTGCAAGAGTGAGGATG+TGG | + | chr2.3:75730860-75730879 | MS.gene002057:intron | 40.0% |
!! | AGTAATGGAGGCATTGAAGT+TGG | + | chr2.3:75730126-75730145 | MS.gene002057:CDS | 40.0% |
!! | CAAACGAGGTTTTATGAGGA+AGG | - | chr2.3:75731173-75731192 | None:intergenic | 40.0% |
!! | GTTTTCAAGATGGACATCGT+TGG | - | chr2.3:75729696-75729715 | None:intergenic | 40.0% |
!! | TGGTGTGATTTTGTAGTGGA+TGG | + | chr2.3:75730199-75730218 | MS.gene002057:CDS | 40.0% |
!!! | AAGAAGGAGAAGCGTTTTCT+AGG | - | chr2.3:75729535-75729554 | None:intergenic | 40.0% |
AAATAACCTCAACCCACCAC+GGG | - | chr2.3:75731975-75731994 | None:intergenic | 45.0% | |
ACATTATCGGCACAAAAGCG+AGG | - | chr2.3:75729821-75729840 | None:intergenic | 45.0% | |
CCTCACTCTTGCAAAAAGGT+AGG | - | chr2.3:75730857-75730876 | None:intergenic | 45.0% | |
CGAAGGAAACTTTGTCTCAG+AGG | - | chr2.3:75732220-75732239 | None:intergenic | 45.0% | |
GAAATAACCTCAACCCACCA+CGG | - | chr2.3:75731976-75731995 | None:intergenic | 45.0% | |
GAGACGATACAAGGAGTGAA+AGG | - | chr2.3:75729605-75729624 | None:intergenic | 45.0% | |
GCACATGTGTGCCAAATTTC+TGG | - | chr2.3:75729452-75729471 | None:intergenic | 45.0% | |
GTGTTGCAATTGTGAGTCGA+AGG | - | chr2.3:75732237-75732256 | None:intergenic | 45.0% | |
TCAACAGCTGAGACGATACA+AGG | - | chr2.3:75729614-75729633 | None:intergenic | 45.0% | |
TCCTAATGTCGGACACACAT+CGG | - | chr2.3:75730550-75730569 | None:intergenic | 45.0% | |
TTCATCGCGGTTGTTGAGAT+TGG | - | chr2.3:75729735-75729754 | None:intergenic | 45.0% | |
! | AAGTTTTACCATGTCTGCCG+CGG | + | chr2.3:75729917-75729936 | MS.gene002057:CDS | 45.0% |
! | CCTACCTTTTTGCAAGAGTG+AGG | + | chr2.3:75730854-75730873 | MS.gene002057:intron | 45.0% |
! | CGTTTTCTAGGTGACCTTGT+GGG | - | chr2.3:75729523-75729542 | None:intergenic | 45.0% |
! | GAAGAAGGATGAGTTGGAGA+AGG | + | chr2.3:75730102-75730121 | MS.gene002057:CDS | 45.0% |
! | GATGATGGCTATAAGAGCTG+CGG | + | chr2.3:75732345-75732364 | MS.gene002057:CDS | 45.0% |
! | TGAGTTGGAGAAGGCAGTAA+TGG | + | chr2.3:75730111-75730130 | MS.gene002057:CDS | 45.0% |
!! | AATGGAGGCATTGAAGTTGG+CGG | + | chr2.3:75730129-75730148 | MS.gene002057:CDS | 45.0% |
!!! | CTTTGGAATTTTGACGGCAG+CGG | - | chr2.3:75729477-75729496 | None:intergenic | 45.0% |
!!! | ATATTTTAATATATCAATAA+TGG | + | chr2.3:75731117-75731136 | MS.gene002057:intron | 5.0% |
!!! | TATTTTAATATATCAATAAT+GGG | + | chr2.3:75731118-75731137 | MS.gene002057:intron | 5.0% |
AAGAGGAAGAAACTCGTGGC+TGG | + | chr2.3:75729989-75730008 | MS.gene002057:CDS | 50.0% | |
AAGCCGCGGGAAGACATTAT+CGG | - | chr2.3:75729834-75729853 | None:intergenic | 50.0% | |
ACAAAGACCTCATCCGTGTG+AGG | - | chr2.3:75729650-75729669 | None:intergenic | 50.0% | |
ACCGATGTGTGTCCGACATT+AGG | + | chr2.3:75730546-75730565 | MS.gene002057:intron | 50.0% | |
ACTATCCTCGAGGGGATGAT+TGG | + | chr2.3:75730179-75730198 | MS.gene002057:CDS | 50.0% | |
CATGAACGTCGGTAACGAAC+AGG | - | chr2.3:75729886-75729905 | None:intergenic | 50.0% | |
CGCATGTGCGTCCAGAAATT+TGG | + | chr2.3:75729438-75729457 | MS.gene002057:CDS | 50.0% | |
CTGTTCGTTACCGACGTTCA+TGG | + | chr2.3:75729884-75729903 | MS.gene002057:CDS | 50.0% | |
GAAGTTGGCGGAAGAGAACA+AGG | + | chr2.3:75730141-75730160 | MS.gene002057:CDS | 50.0% | |
GGAGCAGAAGAAGGATGAGT+TGG | + | chr2.3:75730096-75730115 | MS.gene002057:CDS | 50.0% | |
GTTGGAGAAGGCAGTAATGG+AGG | + | chr2.3:75730114-75730133 | MS.gene002057:CDS | 50.0% | |
TGTTTCTCTTGGGAAACCCG+CGG | - | chr2.3:75729937-75729956 | None:intergenic | 50.0% | |
TTTGTTTGGGGGAATGGCGT+CGG | - | chr2.3:75732012-75732031 | None:intergenic | 50.0% | |
! | AGAGTGTGTGTGGGTAATGG+AGG | - | chr2.3:75729564-75729583 | None:intergenic | 50.0% |
! | AGTTTTACCATGTCTGCCGC+GGG | + | chr2.3:75729918-75729937 | MS.gene002057:CDS | 50.0% |
! | ATTTCTGGACGCACATGCGA+TGG | - | chr2.3:75729437-75729456 | None:intergenic | 50.0% |
! | GCGTTTTCTAGGTGACCTTG+TGG | - | chr2.3:75729524-75729543 | None:intergenic | 50.0% |
!! | AACGAACAGGTGTTGAGACG+AGG | - | chr2.3:75729873-75729892 | None:intergenic | 50.0% |
!! | CAGGTGTTGAGACGAGGATT+CGG | - | chr2.3:75729867-75729886 | None:intergenic | 50.0% |
!! | GAACACGCAGTTTGTTGCAG+CGG | + | chr2.3:75730069-75730088 | MS.gene002057:CDS | 50.0% |
AAGACGAGTCAACCCGTGGT+GGG | + | chr2.3:75731960-75731979 | MS.gene002057:CDS | 55.0% | |
CGGCACAAAAGCGAGGTATG+TGG | - | chr2.3:75729814-75729833 | None:intergenic | 55.0% | |
GACCTCATCCGTGTGAGGAT+CGG | - | chr2.3:75729645-75729664 | None:intergenic | 55.0% | |
TCACACCAATCATCCCCTCG+AGG | - | chr2.3:75730187-75730206 | None:intergenic | 55.0% | |
TCTCCTTGCCGATCCTCACA+CGG | + | chr2.3:75729634-75729653 | MS.gene002057:CDS | 55.0% | |
TTCCAAGACGAGTCAACCCG+TGG | + | chr2.3:75731956-75731975 | MS.gene002057:CDS | 55.0% | |
! | GTGCCGATAATGTCTTCCCG+CGG | + | chr2.3:75729828-75729847 | MS.gene002057:CDS | 55.0% |
CAAGACGAGTCAACCCGTGG+TGG | + | chr2.3:75731959-75731978 | MS.gene002057:CDS | 60.0% | |
CATCCGTGTGAGGATCGGCA+AGG | - | chr2.3:75729640-75729659 | None:intergenic | 60.0% | |
GAGACGAGGATTCGGCCTCT+AGG | - | chr2.3:75729859-75729878 | None:intergenic | 60.0% | |
TGCCGATCCTCACACGGATG+AGG | + | chr2.3:75729640-75729659 | MS.gene002057:CDS | 60.0% | |
!! | AGTCAACCCGTGGTGGGTTG+AGG | + | chr2.3:75731966-75731985 | MS.gene002057:CDS | 60.0% |
!! | CACCACGGGTTGACTCGTCT+TGG | - | chr2.3:75731961-75731980 | None:intergenic | 60.0% |
!! | CACGCAGTTTGTTGCAGCGG+CGG | + | chr2.3:75730072-75730091 | MS.gene002057:CDS | 60.0% |
CTTCCCGCGGCTTGACCTAG+AGG | + | chr2.3:75729841-75729860 | MS.gene002057:CDS | 65.0% | |
TCGGCCTCTAGGTCAAGCCG+CGG | - | chr2.3:75729848-75729867 | None:intergenic | 65.0% | |
TGGGAAACCCGCGGCAGACA+TGG | - | chr2.3:75729928-75729947 | None:intergenic | 65.0% | |
!! | GCAGTTTGTTGCAGCGGCGG+CGG | + | chr2.3:75730075-75730094 | MS.gene002057:CDS | 65.0% |
AGCGGCGGCGGAGCAGAAGA+AGG | + | chr2.3:75730087-75730106 | MS.gene002057:CDS | 70.0% | |
CGGCCTCTAGGTCAAGCCGC+GGG | - | chr2.3:75729847-75729866 | None:intergenic | 70.0% | |
! | TGGGGGAATGGCGTCGGAGC+AGG | - | chr2.3:75732006-75732025 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 75729416 | 75732380 | 75729416 | ID=MS.gene002057 |
chr2.3 | mRNA | 75729416 | 75732380 | 75729416 | ID=MS.gene002057.t1;Parent=MS.gene002057 |
chr2.3 | exon | 75729416 | 75730363 | 75729416 | ID=MS.gene002057.t1.exon1;Parent=MS.gene002057.t1 |
chr2.3 | CDS | 75729416 | 75730363 | 75729416 | ID=cds.MS.gene002057.t1;Parent=MS.gene002057.t1 |
chr2.3 | exon | 75731925 | 75732380 | 75731925 | ID=MS.gene002057.t1.exon2;Parent=MS.gene002057.t1 |
chr2.3 | CDS | 75731925 | 75732380 | 75731925 | ID=cds.MS.gene002057.t1;Parent=MS.gene002057.t1 |
Gene Sequence |
Protein sequence |