AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002099

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002099.t1 MTR_6g470940 98.058 103 2 0 1 103 913 1015 5.42e-66 215
MS.gene002099.t1 MTR_5g069000 87.379 103 13 0 1 103 799 901 5.20e-60 198
MS.gene002099.t1 MTR_4g035835 86.408 103 14 0 1 103 795 897 7.89e-60 197
MS.gene002099.t1 MTR_3g104700 48.544 103 53 0 1 103 130 232 3.01e-28 107
MS.gene002099.t1 MTR_3g104700 48.544 103 53 0 1 103 130 232 3.64e-28 107
MS.gene002099.t1 MTR_4g107280 47.059 102 54 0 1 102 132 233 9.01e-28 105
MS.gene002099.t1 MTR_7g073520 46.078 102 55 0 1 102 184 285 9.36e-28 105
MS.gene002099.t1 MTR_1g442790 48.544 103 53 0 1 103 146 248 1.78e-27 105
MS.gene002099.t1 MTR_1g442790 48.544 103 53 0 1 103 146 248 1.97e-27 105
MS.gene002099.t1 MTR_2g040150 50.485 103 51 0 1 103 149 251 5.31e-27 103
MS.gene002099.t1 MTR_1g069735 45.631 103 56 0 1 103 156 258 9.56e-26 100
MS.gene002099.t1 MTR_1g069735 45.631 103 56 0 1 103 156 258 1.03e-25 100
MS.gene002099.t1 MTR_1g042700 45.631 103 56 0 1 103 151 253 1.21e-25 100
MS.gene002099.t1 MTR_1g069735 45.631 103 56 0 1 103 156 258 1.30e-25 100
MS.gene002099.t1 MTR_7g097150 45.631 103 56 0 1 103 156 258 1.53e-25 99.8
MS.gene002099.t1 MTR_1g019340 45.631 103 56 0 1 103 144 246 1.54e-25 99.8
MS.gene002099.t1 MTR_1g019340 45.631 103 56 0 1 103 144 246 2.26e-25 99.0
MS.gene002099.t1 MTR_1g075880 43.689 103 58 0 1 103 153 255 2.97e-25 99.0
MS.gene002099.t1 MTR_1g060790 48.077 104 52 2 1 102 508 611 1.27e-23 94.7
MS.gene002099.t1 MTR_7g104180 48.077 104 52 2 1 102 530 633 3.11e-23 93.6
MS.gene002099.t1 MTR_2g062850 46.154 104 54 1 1 102 207 310 1.05e-22 92.0
MS.gene002099.t1 MTR_8g070530 41.346 104 59 1 1 102 635 738 7.62e-22 89.7
MS.gene002099.t1 MTR_8g035890 39.394 99 60 0 5 103 56 154 3.71e-21 85.5
MS.gene002099.t1 MTR_1g090917 39.806 103 62 0 1 103 87 189 3.89e-21 87.4
MS.gene002099.t1 MTR_1g090917 39.806 103 62 0 1 103 87 189 3.95e-21 87.4
MS.gene002099.t1 MTR_3g010260 46.316 95 49 1 10 102 462 556 7.52e-21 86.7
MS.gene002099.t1 MTR_7g033640 47.826 92 46 2 13 102 282 373 1.77e-20 85.5
MS.gene002099.t1 MTR_2g095980 39.423 104 61 1 1 102 409 512 2.08e-20 85.5
MS.gene002099.t1 MTR_2g095980 39.423 104 61 1 1 102 664 767 2.13e-20 85.5
MS.gene002099.t1 MTR_2g095980 39.423 104 61 1 1 102 664 767 2.14e-20 85.5
MS.gene002099.t1 MTR_8g006870 51.087 92 43 2 13 102 420 511 1.12e-19 83.2
MS.gene002099.t1 MTR_7g081665 47.059 102 51 3 3 102 405 505 1.52e-19 83.2
MS.gene002099.t1 MTR_6g004720 45.652 92 48 2 13 102 301 392 2.57e-19 82.4
MS.gene002099.t1 MTR_2g027240 43.478 92 50 1 13 102 254 345 3.76e-19 82.0
MS.gene002099.t1 MTR_8g086380 38.835 103 62 1 1 103 62 163 1.07e-18 80.5
MS.gene002099.t1 MTR_2g018990 45.745 94 45 2 13 102 137 228 1.92e-18 79.7
MS.gene002099.t1 MTR_5g067150 34.746 118 67 1 1 108 45 162 3.18e-18 79.0
MS.gene002099.t1 MTR_4g131060 35.922 103 65 1 1 103 54 155 4.93e-18 78.6
MS.gene002099.t1 MTR_8g040300 39.560 91 55 0 13 103 58 148 1.14e-17 76.3
MS.gene002099.t1 MTR_5g067150 34.746 118 67 1 1 108 45 162 1.37e-17 77.0
MS.gene002099.t1 MTR_5g067150 34.746 118 67 1 1 108 45 162 1.40e-17 77.0
MS.gene002099.t1 MTR_4g061610 36.449 107 63 1 1 102 676 782 1.87e-17 77.0
MS.gene002099.t1 MTR_4g029020 33.981 103 67 1 1 103 48 149 2.58e-17 76.6
MS.gene002099.t1 MTR_8g011780 40.217 92 53 1 13 102 78 169 4.49e-17 75.9
MS.gene002099.t1 MTR_2g085065 41.304 92 52 1 13 102 142 233 4.96e-17 75.9
MS.gene002099.t1 MTR_8g024590 33.010 103 69 0 1 103 53 155 5.36e-17 75.5
MS.gene002099.t1 MTR_2g049790 33.981 103 68 0 1 103 59 161 5.72e-17 75.5
MS.gene002099.t1 MTR_8g024100 34.375 96 63 0 2 97 51 146 9.31e-17 75.1
MS.gene002099.t1 MTR_4g107280 42.466 73 42 0 30 102 122 194 1.01e-16 74.7
MS.gene002099.t1 MTR_3g110405 35.644 101 65 0 3 103 75 175 1.26e-16 73.9
MS.gene002099.t1 MTR_7g053200 42.391 92 51 1 13 102 68 159 1.29e-16 74.3
MS.gene002099.t1 MTR_8g089420 42.391 92 51 1 13 102 133 224 1.47e-16 74.3
MS.gene002099.t1 MTR_5g088350 33.981 103 68 0 1 103 49 151 1.60e-16 74.3
MS.gene002099.t1 MTR_8g024600 33.010 103 69 0 1 103 53 155 1.88e-16 73.9
MS.gene002099.t1 MTR_8g098425 38.462 91 56 0 13 103 458 548 1.99e-16 73.9
MS.gene002099.t1 MTR_4g113790 40.777 103 58 3 2 102 136 237 2.98e-16 73.6
MS.gene002099.t1 MTR_7g072575 37.755 98 60 1 6 103 53 149 5.78e-16 72.8
MS.gene002099.t1 MTR_5g088350 33.981 103 68 0 1 103 49 151 6.02e-16 72.4
MS.gene002099.t1 MTR_5g088350 33.981 103 68 0 1 103 49 151 6.34e-16 72.4
MS.gene002099.t1 MTR_4g006970 34.653 101 65 1 3 103 58 157 8.02e-16 72.4
MS.gene002099.t1 MTR_3g466400 33.010 103 68 1 1 103 50 151 1.30e-15 71.6
MS.gene002099.t1 MTR_5g075100 36.264 91 58 0 13 103 71 161 1.64e-15 71.2
MS.gene002099.t1 MTR_2g069990 41.304 92 52 1 13 102 144 235 1.76e-15 71.2
MS.gene002099.t1 MTR_8g446990 40.217 92 53 1 13 102 182 273 1.83e-15 71.2
MS.gene002099.t1 MTR_1g100250 32.292 96 65 0 8 103 456 551 2.30e-15 71.2
MS.gene002099.t1 MTR_2g016340 32.039 103 69 1 1 103 48 149 3.33e-15 70.5
MS.gene002099.t1 MTR_4g065080 38.043 92 55 1 13 102 70 161 6.87e-15 69.7
MS.gene002099.t1 MTR_1g103760 36.842 95 59 1 9 103 56 149 7.37e-15 69.7
MS.gene002099.t1 MTR_1g090917 48.438 64 33 0 40 103 1 64 1.34e-14 68.6
MS.gene002099.t1 MTR_1g090917 48.438 64 33 0 40 103 1 64 1.37e-14 68.6
MS.gene002099.t1 MTR_4g114670 33.010 103 69 0 1 103 47 149 1.58e-14 68.6
MS.gene002099.t1 MTR_4g082325 34.314 102 63 2 6 103 182 283 1.84e-14 68.6
MS.gene002099.t1 MTR_4g114670 33.010 103 69 0 1 103 47 149 1.87e-14 68.6
MS.gene002099.t1 MTR_2g020380 36.275 102 65 0 2 103 35 136 2.64e-14 68.2
MS.gene002099.t1 MTR_7g113490 34.021 97 64 0 7 103 115 211 2.71e-14 68.2
MS.gene002099.t1 MTR_8g093730 34.000 100 66 0 4 103 340 439 3.01e-14 67.8
MS.gene002099.t1 MTR_3g099920 33.333 96 64 0 8 103 62 157 3.23e-14 67.8
MS.gene002099.t1 MTR_4g125800 34.951 103 66 1 2 103 52 154 3.72e-14 67.0
MS.gene002099.t1 MTR_4g125800 34.951 103 66 1 2 103 105 207 5.12e-14 67.0
MS.gene002099.t1 MTR_4g125800 34.951 103 66 1 2 103 128 230 5.43e-14 67.0
MS.gene002099.t1 MTR_2g105010 31.633 98 66 1 6 103 55 151 6.00e-14 67.0
MS.gene002099.t1 MTR_1g013700 34.000 100 65 1 4 103 52 150 6.83e-14 66.6
MS.gene002099.t1 MTR_3g096230 33.000 100 67 0 4 103 285 384 6.84e-14 66.6
MS.gene002099.t1 MTR_3g466480 32.323 99 66 1 5 103 61 158 6.87e-14 66.6
MS.gene002099.t1 MTR_3g096230 33.000 100 67 0 4 103 285 384 7.00e-14 66.6
MS.gene002099.t1 MTR_2g045470 32.710 107 72 0 5 111 60 166 7.37e-14 66.6
MS.gene002099.t1 MTR_1g105290 32.000 100 68 0 4 103 99 198 7.79e-14 66.6
MS.gene002099.t1 MTR_1g105290 32.000 100 68 0 4 103 99 198 7.99e-14 66.6
MS.gene002099.t1 MTR_1g105290 32.000 100 68 0 4 103 99 198 8.04e-14 66.6
MS.gene002099.t1 MTR_1g076370 36.585 82 52 0 22 103 79 160 1.14e-13 66.2
MS.gene002099.t1 MTR_8g079560 34.737 95 58 1 2 96 60 150 1.22e-13 65.9
MS.gene002099.t1 MTR_2g078740 30.928 97 67 0 7 103 55 151 1.40e-13 65.9
MS.gene002099.t1 MTR_2g078740 30.928 97 67 0 7 103 55 151 1.40e-13 65.9
MS.gene002099.t1 MTR_2g078740 30.928 97 67 0 7 103 55 151 1.40e-13 65.9
MS.gene002099.t1 MTR_5g075060 29.126 103 72 1 1 103 48 149 2.88e-13 65.1
MS.gene002099.t1 MTR_3g072320 35.417 96 57 2 10 103 55 147 3.17e-13 64.7
MS.gene002099.t1 MTR_1g034030 34.737 95 58 1 2 96 61 151 3.37e-13 64.7
MS.gene002099.t1 MTR_4g074875 33.333 96 62 1 10 103 64 159 3.74e-13 64.7
MS.gene002099.t1 MTR_4g074875 33.333 96 62 1 10 103 64 159 3.74e-13 64.7
MS.gene002099.t1 MTR_4g128820 31.068 103 71 0 1 103 46 148 4.25e-13 64.7
MS.gene002099.t1 MTR_4g086855 34.737 95 58 1 2 96 60 150 4.42e-13 64.3
MS.gene002099.t1 MTR_6g090470 34.483 116 73 2 2 114 104 219 4.60e-13 64.3
MS.gene002099.t1 MTR_8g024600 41.429 70 41 0 34 103 3 72 5.06e-13 64.3
MS.gene002099.t1 MTR_5g018050 33.673 98 61 1 2 99 55 148 5.50e-13 63.9
MS.gene002099.t1 MTR_4g075410 32.292 96 63 1 10 103 64 159 5.68e-13 64.3
MS.gene002099.t1 MTR_4g075410 32.292 96 63 1 10 103 64 159 5.68e-13 64.3
MS.gene002099.t1 MTR_5g018050 33.673 98 61 1 2 99 55 148 1.36e-12 62.4
MS.gene002099.t1 MTR_5g045190 37.113 97 60 1 8 103 280 376 1.42e-12 63.2
MS.gene002099.t1 MTR_2g098240 34.694 98 50 2 13 102 64 155 1.78e-12 62.8
MS.gene002099.t1 MTR_6g012980 29.167 96 68 0 8 103 116 211 2.26e-12 62.4
MS.gene002099.t1 MTR_1g034030 34.737 95 58 1 2 96 61 151 2.34e-12 62.0
MS.gene002099.t1 MTR_5g013550 32.632 95 60 1 2 96 43 133 2.50e-12 62.0
MS.gene002099.t1 MTR_5g018050 33.333 105 64 2 1 103 21 121 2.70e-12 62.0
MS.gene002099.t1 MTR_0464s0040 35.714 84 53 1 20 103 67 149 3.14e-12 60.5
MS.gene002099.t1 MTR_6g012990 33.333 96 64 0 8 103 62 157 3.20e-12 62.0
MS.gene002099.t1 MTR_3g097320 31.579 95 61 1 2 96 41 131 3.39e-12 62.0
MS.gene002099.t1 MTR_6g012990 33.333 96 64 0 8 103 62 157 3.67e-12 62.0
MS.gene002099.t1 MTR_6g048250 32.323 99 67 0 5 103 59 157 4.69e-12 61.6
MS.gene002099.t1 MTR_6g048250 33.333 96 64 0 8 103 62 157 4.95e-12 61.2
MS.gene002099.t1 MTR_2g040510 36.585 82 51 1 23 103 126 207 5.47e-12 61.2
MS.gene002099.t1 MTR_6g048250 33.333 96 64 0 8 103 62 157 5.54e-12 61.2
MS.gene002099.t1 MTR_4g123940 31.313 99 68 0 5 103 66 164 8.78e-12 60.5
MS.gene002099.t1 MTR_8g095330 32.632 95 60 1 2 96 42 132 1.02e-11 60.5
MS.gene002099.t1 MTR_5g091880 34.000 100 63 1 7 103 204 303 1.25e-11 60.5
MS.gene002099.t1 MTR_2g006330 32.632 95 60 1 2 96 41 131 1.57e-11 60.1
MS.gene002099.t1 MTR_4g123940 31.313 99 68 0 5 103 66 164 1.65e-11 60.1
MS.gene002099.t1 MTR_1g048630 30.928 97 66 1 7 103 48 143 1.74e-11 60.1
MS.gene002099.t1 MTR_1g071480 31.313 99 55 3 13 103 51 144 1.84e-11 60.1
MS.gene002099.t1 MTR_2g017825 33.333 102 62 2 8 103 190 291 2.25e-11 59.3
MS.gene002099.t1 MTR_4g099240 32.000 100 62 2 2 101 42 135 2.42e-11 59.3
MS.gene002099.t1 MTR_3g095620 33.696 92 61 0 9 100 68 159 2.93e-11 58.9
MS.gene002099.t1 MTR_8g088740 33.721 86 54 2 19 103 54 137 3.28e-11 57.8
MS.gene002099.t1 MTR_7g089480 39.474 76 45 1 25 99 205 280 3.49e-11 58.9
MS.gene002099.t1 MTR_4g019410 29.592 98 69 0 2 99 55 152 4.74e-11 58.5
MS.gene002099.t1 MTR_4g019410 29.592 98 69 0 2 99 55 152 4.87e-11 58.5
MS.gene002099.t1 MTR_2g094090 39.706 68 41 0 36 103 198 265 5.19e-11 58.5
MS.gene002099.t1 MTR_2g094090 39.706 68 41 0 36 103 198 265 7.23e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002099.t1 AT3G17850 91.262 103 9 0 1 103 918 1020 1.23e-61 203
MS.gene002099.t1 AT5G62310 87.379 103 13 0 1 103 790 892 1.16e-60 200
MS.gene002099.t1 AT1G48490 87.379 103 13 0 1 103 864 966 1.55e-58 194
MS.gene002099.t1 AT1G48490 87.379 103 13 0 1 103 864 966 1.55e-58 194
MS.gene002099.t1 AT1G48490 87.379 103 13 0 1 103 864 966 1.55e-58 194
MS.gene002099.t1 AT1G48490 87.379 103 13 0 1 103 865 967 1.55e-58 194
MS.gene002099.t1 AT1G45160 82.524 103 18 0 1 103 706 808 9.43e-57 189
MS.gene002099.t1 AT1G45160 82.524 103 18 0 1 103 706 808 9.73e-57 189
MS.gene002099.t1 AT1G30640 50.485 103 51 0 1 103 63 165 4.75e-31 114
MS.gene002099.t1 AT1G30640 50.485 103 51 0 1 103 156 258 8.60e-31 114
MS.gene002099.t1 AT1G30640 50.485 103 51 0 1 103 156 258 8.60e-31 114
MS.gene002099.t1 AT4G33080 49.515 103 52 0 1 103 130 232 1.29e-29 111
MS.gene002099.t1 AT4G33080 49.515 103 52 0 1 103 130 232 1.49e-29 110
MS.gene002099.t1 AT5G09890 47.573 103 54 0 1 103 138 240 5.29e-28 106
MS.gene002099.t1 AT5G09890 47.573 103 54 0 1 103 138 240 5.32e-28 106
MS.gene002099.t1 AT3G08730 46.078 102 55 0 1 102 170 271 1.01e-27 105
MS.gene002099.t1 AT3G08730 46.078 102 55 0 1 102 170 271 1.01e-27 105
MS.gene002099.t1 AT3G08720 46.078 102 55 0 1 102 176 277 1.05e-27 105
MS.gene002099.t1 AT3G08720 46.078 102 55 0 1 102 176 277 1.05e-27 105
MS.gene002099.t1 AT3G08720 46.078 102 55 0 1 102 176 277 1.05e-27 105
MS.gene002099.t1 AT3G08720 46.078 102 55 0 1 102 176 277 1.05e-27 105
MS.gene002099.t1 AT4G14350 48.544 103 53 0 1 103 155 257 1.36e-27 105
MS.gene002099.t1 AT4G14350 48.544 103 53 0 1 103 155 257 1.37e-27 105
MS.gene002099.t1 AT4G14350 48.544 103 53 0 1 103 155 257 1.37e-27 105
MS.gene002099.t1 AT4G14350 48.544 103 53 0 1 103 155 257 1.37e-27 105
MS.gene002099.t1 AT2G20470 46.602 103 55 0 1 103 160 262 5.10e-27 103
MS.gene002099.t1 AT2G20470 46.602 103 55 0 1 103 160 262 5.64e-27 103
MS.gene002099.t1 AT2G20470 46.602 103 55 0 1 103 160 262 5.64e-27 103
MS.gene002099.t1 AT3G23310 46.602 103 55 0 1 103 156 258 1.61e-26 102
MS.gene002099.t1 AT1G03920 46.602 103 55 0 1 103 60 162 2.29e-26 101
MS.gene002099.t1 AT1G03920 46.602 103 55 0 1 103 173 275 3.54e-26 101
MS.gene002099.t1 AT1G03920 46.602 103 55 0 1 103 173 275 3.54e-26 101
MS.gene002099.t1 AT2G19400 49.515 103 52 0 1 103 141 243 8.02e-26 100
MS.gene002099.t1 AT5G04510 39.806 103 62 0 1 103 80 182 4.88e-24 93.6
MS.gene002099.t1 AT5G04510 39.806 103 62 0 1 103 80 182 1.58e-23 93.6
MS.gene002099.t1 AT5G04510 39.806 103 62 0 1 103 80 182 2.37e-23 93.6
MS.gene002099.t1 AT3G10540 40.777 103 61 0 1 103 81 183 2.76e-23 93.6
MS.gene002099.t1 AT3G52890 50.538 93 44 2 12 102 585 677 4.09e-23 93.2
MS.gene002099.t1 AT3G52890 50.538 93 44 2 12 102 585 677 4.09e-23 93.2
MS.gene002099.t1 AT3G52890 50.538 93 44 2 12 102 585 677 4.09e-23 93.2
MS.gene002099.t1 AT3G52890 50.538 93 44 2 12 102 585 677 4.09e-23 93.2
MS.gene002099.t1 AT2G36350 44.231 104 56 1 1 102 595 698 9.99e-22 89.4
MS.gene002099.t1 AT1G16440 42.308 104 58 1 1 102 151 254 1.02e-21 89.0
MS.gene002099.t1 AT3G27580 44.118 102 54 2 3 102 221 321 2.45e-21 88.2
MS.gene002099.t1 AT3G27580 44.118 102 54 2 3 102 221 321 2.45e-21 88.2
MS.gene002099.t1 AT5G58140 40.385 104 60 1 1 102 613 716 3.91e-21 87.4
MS.gene002099.t1 AT5G58140 40.385 104 60 1 1 102 613 716 3.92e-21 87.4
MS.gene002099.t1 AT5G58140 40.385 104 60 1 1 102 613 716 3.92e-21 87.4
MS.gene002099.t1 AT5G58140 40.385 104 60 1 1 102 613 716 3.92e-21 87.4
MS.gene002099.t1 AT5G58140 40.385 104 60 1 1 102 613 716 3.92e-21 87.4
MS.gene002099.t1 AT5G58140 40.385 104 60 1 1 102 613 716 3.92e-21 87.4
MS.gene002099.t1 AT1G79250 46.739 92 47 1 13 102 194 285 4.25e-21 87.4
MS.gene002099.t1 AT1G79250 46.739 92 47 1 13 102 194 285 4.25e-21 87.4
MS.gene002099.t1 AT1G79250 46.739 92 47 1 13 102 194 285 4.25e-21 87.4
MS.gene002099.t1 AT1G79250 46.739 92 47 1 13 102 194 285 4.25e-21 87.4
MS.gene002099.t1 AT2G45490 42.857 91 52 0 13 103 70 160 5.97e-21 84.7
MS.gene002099.t1 AT2G45490 42.857 91 52 0 13 103 70 160 8.99e-21 84.7
MS.gene002099.t1 AT2G44830 52.174 92 42 2 13 102 411 502 2.77e-20 85.1
MS.gene002099.t1 AT2G44830 52.174 92 42 2 13 102 411 502 2.77e-20 85.1
MS.gene002099.t1 AT2G44830 52.174 92 42 2 13 102 411 502 2.77e-20 85.1
MS.gene002099.t1 AT5G03640 45.098 102 54 1 3 102 579 680 3.48e-20 84.7
MS.gene002099.t1 AT5G03640 45.098 102 54 1 3 102 579 680 3.48e-20 84.7
MS.gene002099.t1 AT4G24400 36.752 117 64 1 1 107 45 161 7.94e-20 83.6
MS.gene002099.t1 AT4G24400 36.752 117 64 1 1 107 45 161 1.09e-19 83.2
MS.gene002099.t1 AT3G12690 46.739 92 47 1 13 102 233 324 1.57e-19 82.8
MS.gene002099.t1 AT3G12690 46.739 92 47 1 13 102 233 324 1.57e-19 82.8
MS.gene002099.t1 AT3G12690 46.739 92 47 1 13 102 233 324 1.57e-19 82.8
MS.gene002099.t1 AT3G45780 40.385 104 60 1 1 102 699 802 1.97e-19 82.8
MS.gene002099.t1 AT3G45780 40.385 104 60 1 1 102 699 802 1.97e-19 82.8
MS.gene002099.t1 AT4G26610 44.565 92 49 2 13 102 171 262 2.48e-19 82.4
MS.gene002099.t1 AT5G47750 46.739 92 47 2 13 102 239 330 2.74e-19 82.4
MS.gene002099.t1 AT5G55910 44.565 92 49 2 13 102 157 248 3.23e-19 82.0
MS.gene002099.t1 AT5G55910 44.565 92 49 2 13 102 157 248 3.23e-19 82.0
MS.gene002099.t1 AT2G25090 35.644 101 65 0 3 103 54 154 1.55e-18 80.1
MS.gene002099.t1 AT4G18700 37.864 103 63 1 1 103 62 163 2.13e-18 79.7
MS.gene002099.t1 AT1G29230 36.893 103 64 1 1 103 110 211 2.47e-18 79.7
MS.gene002099.t1 AT5G40030 42.157 102 56 2 3 102 153 253 5.31e-18 78.6
MS.gene002099.t1 AT5G45810 36.893 103 64 1 1 103 64 165 7.16e-18 78.2
MS.gene002099.t1 AT3G20830 44.048 84 45 1 21 102 83 166 8.51e-18 77.8
MS.gene002099.t1 AT2G34650 43.478 92 50 1 13 102 128 219 1.98e-17 77.0
MS.gene002099.t1 AT1G30270 33.010 103 69 0 1 103 67 169 3.00e-17 76.3
MS.gene002099.t1 AT1G30270 33.010 103 69 0 1 103 67 169 3.03e-17 76.3
MS.gene002099.t1 AT3G61960 35.052 97 63 0 1 97 45 141 3.73e-17 76.3
MS.gene002099.t1 AT3G61960 35.052 97 63 0 1 97 45 141 3.76e-17 76.3
MS.gene002099.t1 AT2G26700 43.478 92 50 2 13 102 137 228 4.81e-17 75.9
MS.gene002099.t1 AT5G25110 36.634 101 63 1 3 103 81 180 6.90e-17 75.5
MS.gene002099.t1 AT5G10930 36.893 103 64 1 1 103 49 150 8.69e-17 75.1
MS.gene002099.t1 AT3G44610 40.217 92 53 1 13 102 127 218 8.84e-17 75.1
MS.gene002099.t1 AT2G26980 32.039 103 70 0 1 103 50 152 1.17e-16 74.3
MS.gene002099.t1 AT2G26980 32.039 103 70 0 1 103 50 152 1.34e-16 74.3
MS.gene002099.t1 AT2G26980 32.039 103 70 0 1 103 60 162 1.41e-16 74.3
MS.gene002099.t1 AT5G21222 32.039 103 70 0 1 103 49 151 1.55e-16 74.3
MS.gene002099.t1 AT5G21222 32.039 103 70 0 1 103 49 151 1.55e-16 74.3
MS.gene002099.t1 AT5G21222 32.039 103 70 0 1 103 49 151 1.55e-16 74.3
MS.gene002099.t1 AT5G21222 32.039 103 70 0 1 103 49 151 1.55e-16 74.3
MS.gene002099.t1 AT5G18700 39.604 101 58 1 3 103 39 136 2.02e-16 74.3
MS.gene002099.t1 AT5G45820 36.735 98 61 1 6 103 53 149 2.41e-16 73.9
MS.gene002099.t1 AT1G01140 33.981 103 68 0 1 103 55 157 2.55e-16 73.6
MS.gene002099.t1 AT1G01140 33.981 103 68 0 1 103 55 157 2.56e-16 73.6
MS.gene002099.t1 AT1G01140 33.981 103 68 0 1 103 55 157 2.56e-16 73.6
MS.gene002099.t1 AT2G26980 32.039 103 70 0 1 103 50 152 2.73e-16 72.4
MS.gene002099.t1 AT5G35410 33.981 103 68 0 1 103 47 149 2.92e-16 73.6
MS.gene002099.t1 AT5G35410 33.981 103 68 0 1 103 47 149 3.26e-16 73.6
MS.gene002099.t1 AT5G21326 34.951 103 67 0 1 103 49 151 4.72e-16 72.8
MS.gene002099.t1 AT2G26980 32.039 103 70 0 1 103 50 152 5.47e-16 72.8
MS.gene002099.t1 AT4G32830 35.644 101 65 0 3 103 69 169 6.20e-16 72.0
MS.gene002099.t1 AT2G25880 35.644 101 65 0 3 103 63 163 6.72e-16 71.6
MS.gene002099.t1 AT2G25880 35.644 101 65 0 3 103 76 176 8.06e-16 71.6
MS.gene002099.t1 AT4G30960 35.714 98 62 1 6 103 65 161 9.86e-16 72.0
MS.gene002099.t1 AT2G25880 35.644 101 65 0 3 103 124 224 1.06e-15 71.6
MS.gene002099.t1 AT5G01810 34.951 103 66 1 1 103 48 149 1.09e-15 72.0
MS.gene002099.t1 AT5G01810 34.951 103 66 1 1 103 48 149 1.09e-15 72.0
MS.gene002099.t1 AT5G01810 34.951 103 66 1 1 103 48 149 1.27e-15 71.6
MS.gene002099.t1 AT2G34180 36.792 106 61 2 3 103 90 194 2.22e-15 71.2
MS.gene002099.t1 AT1G54960 34.021 97 64 0 7 103 115 211 3.07e-15 70.9
MS.gene002099.t1 AT1G54960 34.021 97 64 0 7 103 115 211 3.07e-15 70.9
MS.gene002099.t1 AT3G01090 36.458 96 61 0 8 103 62 157 4.70e-15 70.1
MS.gene002099.t1 AT3G01090 36.458 96 61 0 8 103 62 157 4.70e-15 70.1
MS.gene002099.t1 AT3G01090 36.458 96 61 0 8 103 85 180 4.97e-15 70.1
MS.gene002099.t1 AT1G53700 39.796 98 57 1 7 102 136 233 5.20e-15 70.1
MS.gene002099.t1 AT1G63700 35.165 91 59 0 13 103 450 540 8.66e-15 69.3
MS.gene002099.t1 AT1G63700 35.165 91 59 0 13 103 450 540 8.66e-15 69.3
MS.gene002099.t1 AT2G30360 31.633 98 67 0 6 103 63 160 1.01e-14 69.3
MS.gene002099.t1 AT1G14000 35.294 102 62 2 6 103 201 302 1.19e-14 68.9
MS.gene002099.t1 AT3G14370 36.735 98 60 1 7 102 130 227 1.46e-14 68.9
MS.gene002099.t1 AT1G49180 31.313 99 68 0 2 100 43 141 2.24e-14 68.2
MS.gene002099.t1 AT1G09000 32.990 97 65 0 7 103 116 212 2.39e-14 68.2
MS.gene002099.t1 AT1G09000 32.990 97 65 0 7 103 116 212 2.41e-14 68.2
MS.gene002099.t1 AT1G49180 31.313 99 68 0 2 100 43 141 2.45e-14 68.2
MS.gene002099.t1 AT5G56580 35.088 114 68 3 2 112 109 219 5.11e-14 67.0
MS.gene002099.t1 AT1G53570 32.000 100 68 0 4 103 255 354 6.01e-14 67.0
MS.gene002099.t1 AT1G53570 32.000 100 68 0 4 103 255 354 6.01e-14 67.0
MS.gene002099.t1 AT1G53570 32.000 100 68 0 4 103 255 354 6.12e-14 67.0
MS.gene002099.t1 AT1G53570 32.000 100 68 0 4 103 255 354 6.12e-14 67.0
MS.gene002099.t1 AT1G53570 32.000 100 68 0 4 103 255 354 6.12e-14 67.0
MS.gene002099.t1 AT1G53570 32.000 100 68 0 4 103 255 354 6.12e-14 67.0
MS.gene002099.t1 AT1G51170 37.349 83 50 1 22 102 85 167 8.03e-14 66.6
MS.gene002099.t1 AT5G63650 34.737 95 58 1 2 96 41 131 8.14e-14 66.6
MS.gene002099.t1 AT3G29160 35.417 96 62 0 8 103 63 158 9.32e-14 66.2
MS.gene002099.t1 AT3G29160 35.417 96 62 0 8 103 63 158 1.01e-13 66.2
MS.gene002099.t1 AT3G29160 35.417 96 62 0 8 103 63 158 1.01e-13 66.2
MS.gene002099.t1 AT3G53930 32.653 98 66 0 2 99 56 153 1.28e-13 66.2
MS.gene002099.t1 AT3G53930 32.653 98 66 0 2 99 56 153 1.28e-13 66.2
MS.gene002099.t1 AT5G58380 32.039 103 69 1 1 103 48 149 1.55e-13 65.9
MS.gene002099.t1 AT5G66880 34.737 95 58 1 2 96 59 149 1.64e-13 65.5
MS.gene002099.t1 AT5G66880 34.737 95 58 1 2 96 59 149 1.64e-13 65.5
MS.gene002099.t1 AT3G23000 34.579 107 64 2 3 103 58 164 1.78e-13 65.5
MS.gene002099.t1 AT3G50500 34.737 95 58 1 2 96 60 150 2.49e-13 65.1
MS.gene002099.t1 AT3G50500 34.737 95 58 1 2 96 60 150 2.53e-13 65.1
MS.gene002099.t1 AT4G14580 36.585 82 52 0 22 103 79 160 2.67e-13 65.1
MS.gene002099.t1 AT3G06030 31.959 97 66 0 7 103 115 211 2.86e-13 65.1
MS.gene002099.t1 AT3G07980 31.313 99 66 1 7 103 61 159 3.59e-13 65.1
MS.gene002099.t1 AT3G07980 31.313 99 66 1 7 103 61 159 3.59e-13 65.1
MS.gene002099.t1 AT4G33950 34.737 95 58 1 2 96 58 148 3.95e-13 64.7
MS.gene002099.t1 AT1G30270 40.580 69 41 0 35 103 4 72 4.24e-13 64.3
MS.gene002099.t1 AT3G15220 31.868 91 62 0 13 103 61 151 5.05e-13 64.3
MS.gene002099.t1 AT4G13000 34.653 101 64 1 4 102 60 160 5.97e-13 63.9
MS.gene002099.t1 AT5G39440 33.333 102 66 1 4 103 56 157 6.12e-13 64.3
MS.gene002099.t1 AT1G48260 33.010 103 69 0 1 103 47 149 7.97e-13 63.9
MS.gene002099.t1 AT1G69220 37.113 97 60 1 8 103 263 359 8.73e-13 63.9
MS.gene002099.t1 AT1G69220 37.113 97 60 1 8 103 290 386 8.76e-13 63.9
MS.gene002099.t1 AT3G13530 31.132 106 67 2 4 103 54 159 9.12e-13 63.9
MS.gene002099.t1 AT3G45240 37.500 96 58 1 10 103 159 254 1.05e-12 63.5
MS.gene002099.t1 AT3G45240 37.500 96 58 1 10 103 159 254 1.06e-12 63.5
MS.gene002099.t1 AT3G45240 37.500 96 58 1 10 103 159 254 1.06e-12 63.5
MS.gene002099.t1 AT4G29810 33.010 103 68 1 2 103 114 216 1.31e-12 63.2
MS.gene002099.t1 AT2G37840 31.250 96 66 0 2 97 48 143 1.55e-12 63.2
MS.gene002099.t1 AT4G33950 34.737 95 58 1 2 96 58 148 1.69e-12 62.8
MS.gene002099.t1 AT4G29810 33.010 103 68 1 2 103 105 207 1.89e-12 62.8
MS.gene002099.t1 AT4G29810 33.010 103 68 1 2 103 114 216 1.91e-12 62.8
MS.gene002099.t1 AT5G60550 33.333 102 66 1 4 103 152 253 2.28e-12 62.4
MS.gene002099.t1 AT3G45790 32.323 99 57 2 9 97 136 234 2.30e-12 62.4
MS.gene002099.t1 AT1G53165 31.868 91 62 0 13 103 61 151 2.48e-12 62.4
MS.gene002099.t1 AT1G53165 31.868 91 62 0 13 103 61 151 2.48e-12 62.4
MS.gene002099.t1 AT1G53165 31.868 91 62 0 13 103 61 151 2.48e-12 62.4
MS.gene002099.t1 AT4G40010 31.731 104 65 2 2 103 41 140 2.69e-12 62.0
MS.gene002099.t1 AT4G18950 35.106 94 58 1 13 103 203 296 4.38e-12 61.6
MS.gene002099.t1 AT4G18950 35.106 94 58 1 13 103 203 296 4.42e-12 61.6
MS.gene002099.t1 AT4G26070 31.683 101 68 1 4 103 105 205 5.12e-12 61.2
MS.gene002099.t1 AT5G01820 34.118 85 55 1 9 93 66 149 5.60e-12 61.2
MS.gene002099.t1 AT4G26070 31.683 101 68 1 4 103 92 192 6.58e-12 60.8
MS.gene002099.t1 AT1G53570 31.522 92 63 0 4 95 255 346 6.68e-12 61.2
MS.gene002099.t1 AT4G26070 31.683 101 68 1 4 103 105 205 7.68e-12 60.8
MS.gene002099.t1 AT4G26070 31.683 101 68 1 4 103 105 205 7.68e-12 60.8
MS.gene002099.t1 AT3G25250 44.444 63 33 1 42 102 101 163 7.78e-12 60.8
MS.gene002099.t1 AT5G08590 32.632 95 60 1 2 96 41 131 7.90e-12 60.8
MS.gene002099.t1 AT5G55090 36.667 90 52 3 13 97 47 136 7.96e-12 60.8
MS.gene002099.t1 AT4G26070 31.683 101 68 1 4 103 104 204 8.05e-12 60.8
MS.gene002099.t1 AT4G26890 37.500 96 55 2 13 103 46 141 8.11e-12 60.8
MS.gene002099.t1 AT1G32320 27.778 126 78 1 1 113 78 203 8.31e-12 60.5
MS.gene002099.t1 AT5G55090 36.667 90 52 3 13 97 109 198 9.78e-12 60.8
MS.gene002099.t1 AT1G73690 31.373 102 68 2 3 103 48 148 1.44e-11 60.1
MS.gene002099.t1 AT1G50240 31.959 97 65 1 7 103 47 142 2.07e-11 59.7
MS.gene002099.t1 AT1G50240 31.959 97 65 1 7 103 47 142 2.07e-11 59.7
MS.gene002099.t1 AT1G10940 30.526 95 62 1 2 96 41 131 2.65e-11 59.3
MS.gene002099.t1 AT5G66850 29.592 98 68 1 7 103 390 487 3.86e-11 58.9
MS.gene002099.t1 AT5G66850 29.592 98 68 1 7 103 390 487 3.88e-11 58.9
MS.gene002099.t1 AT3G17510 32.990 97 63 1 9 103 62 158 4.14e-11 58.9
MS.gene002099.t1 AT2G23030 33.684 95 59 1 2 96 41 131 4.27e-11 58.9
MS.gene002099.t1 AT1G76040 33.000 100 66 1 1 99 148 247 4.94e-11 58.5
MS.gene002099.t1 AT1G76040 33.000 100 66 1 1 99 148 247 5.01e-11 58.5
MS.gene002099.t1 AT1G60940 29.474 95 63 1 2 96 41 131 5.82e-11 58.5
MS.gene002099.t1 AT1G60940 29.474 95 63 1 2 96 41 131 5.82e-11 58.5
MS.gene002099.t1 AT1G70430 31.373 102 68 1 4 103 53 154 6.68e-11 58.5
MS.gene002099.t1 AT1G70430 31.373 102 68 1 4 103 53 154 6.68e-11 58.5
MS.gene002099.t1 AT1G70430 31.373 102 68 1 4 103 53 154 6.70e-11 58.5
MS.gene002099.t1 AT1G18040 33.333 102 66 2 3 103 49 149 7.14e-11 58.2
MS.gene002099.t1 AT1G78290 32.632 95 60 1 2 96 41 131 9.61e-11 57.8
MS.gene002099.t1 AT1G78290 32.632 95 60 1 2 96 41 131 9.61e-11 57.8
MS.gene002099.t1 AT5G23580 41.333 75 44 0 23 97 81 155 9.98e-11 57.8

Find 23 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCTTTACTAAGGAATTT+AGG 0.215618 2.3:+75280670 MS.gene002099:CDS
ATGGAACGGCGGCTTGGACT+TGG 0.398643 2.3:+75280842 MS.gene002099:CDS
TGTGCAATCAATAAATTGTC+AGG 0.449853 2.3:-75280790 None:intergenic
ATCAAGGAACAAGGAGTCAA+TGG 0.475145 2.3:+75280823 MS.gene002099:CDS
GAGACTTGTATTCTTTACTA+AGG 0.491494 2.3:+75280662 MS.gene002099:CDS
GTATTTGCATTCTCTGCATG+TGG 0.518943 2.3:+75280750 MS.gene002099:CDS
GAGTCAATGGAACGGCGGCT+TGG 0.539030 2.3:+75280836 MS.gene002099:CDS
AATTTATTGATTGCACATGA+TGG 0.544154 2.3:+75280796 MS.gene002099:CDS
CCGTGTCTATATTGCTGAAG+TGG 0.548032 2.3:+75280714 MS.gene002099:CDS
TGCTTTCTACAACATTCTTG+CGG 0.560038 2.3:-75280525 None:intergenic
CTTGTCATGGAGTATCTCAA+TGG 0.563365 2.3:+75280637 MS.gene002099:CDS
AGGATGTCTAGATGAGGAAG+TGG 0.568105 2.3:+75280690 MS.gene002099:CDS
TGTTGTAGAAAGCATATTAG+CGG 0.571152 2.3:+75280534 MS.gene002099:CDS
TGCACATGATGGTCACATCA+AGG 0.576319 2.3:+75280807 MS.gene002099:CDS
TAAGTTCTCACGACATGTGA+AGG 0.578172 2.3:-75280611 None:intergenic
TGAGAACTTATATCTTGTCA+TGG 0.583665 2.3:+75280624 MS.gene002099:CDS
CCACTTCAGCAATATAGACA+CGG 0.586551 2.3:-75280714 None:intergenic
CACTTCAGCAATATAGACAC+GGG 0.629377 2.3:-75280713 None:intergenic
GAATTTAGGATGTCTAGATG+AGG 0.630517 2.3:+75280684 MS.gene002099:CDS
GTCATGGAGTATCTCAATGG+TGG 0.648555 2.3:+75280640 MS.gene002099:CDS
GATGGTCACATCAAGGAACA+AGG 0.649984 2.3:+75280814 MS.gene002099:CDS
GGAACAAGGAGTCAATGGAA+CGG 0.698405 2.3:+75280828 MS.gene002099:CDS
ACAAGGAGTCAATGGAACGG+CGG 0.709943 2.3:+75280831 MS.gene002099:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCTTTACTAAGGAATTT+AGG + chr2.3:75280670-75280689 MS.gene002099:CDS 20.0%
!! AATTTATTGATTGCACATGA+TGG + chr2.3:75280796-75280815 MS.gene002099:CDS 25.0%
GAGACTTGTATTCTTTACTA+AGG + chr2.3:75280662-75280681 MS.gene002099:CDS 30.0%
TAGAAAAATCGAACCACAAA+AGG - chr2.3:75280589-75280608 None:intergenic 30.0%
TGAGAACTTATATCTTGTCA+TGG + chr2.3:75280624-75280643 MS.gene002099:CDS 30.0%
TGTGCAATCAATAAATTGTC+AGG - chr2.3:75280793-75280812 None:intergenic 30.0%
! TGTTGTAGAAAGCATATTAG+CGG + chr2.3:75280534-75280553 MS.gene002099:CDS 30.0%
TGCTTTCTACAACATTCTTG+CGG - chr2.3:75280528-75280547 None:intergenic 35.0%
! GAATTTAGGATGTCTAGATG+AGG + chr2.3:75280684-75280703 MS.gene002099:CDS 35.0%
ATCAAGGAACAAGGAGTCAA+TGG + chr2.3:75280823-75280842 MS.gene002099:CDS 40.0%
CACTTCAGCAATATAGACAC+GGG - chr2.3:75280716-75280735 None:intergenic 40.0%
CCACTTCAGCAATATAGACA+CGG - chr2.3:75280717-75280736 None:intergenic 40.0%
GTATTTGCATTCTCTGCATG+TGG + chr2.3:75280750-75280769 MS.gene002099:CDS 40.0%
TAAGTTCTCACGACATGTGA+AGG - chr2.3:75280614-75280633 None:intergenic 40.0%
! CTTGTCATGGAGTATCTCAA+TGG + chr2.3:75280637-75280656 MS.gene002099:CDS 40.0%
AGGATGTCTAGATGAGGAAG+TGG + chr2.3:75280690-75280709 MS.gene002099:CDS 45.0%
CCGTGTCTATATTGCTGAAG+TGG + chr2.3:75280714-75280733 MS.gene002099:CDS 45.0%
GATGGTCACATCAAGGAACA+AGG + chr2.3:75280814-75280833 MS.gene002099:CDS 45.0%
GGAACAAGGAGTCAATGGAA+CGG + chr2.3:75280828-75280847 MS.gene002099:CDS 45.0%
TGCACATGATGGTCACATCA+AGG + chr2.3:75280807-75280826 MS.gene002099:CDS 45.0%
! GTCATGGAGTATCTCAATGG+TGG + chr2.3:75280640-75280659 MS.gene002099:CDS 45.0%
! TACAGTGCGCAATCCTTTTG+TGG + chr2.3:75280573-75280592 MS.gene002099:CDS 45.0%
ACAAGGAGTCAATGGAACGG+CGG + chr2.3:75280831-75280850 MS.gene002099:CDS 50.0%
GAGTCAATGGAACGGCGGCT+TGG + chr2.3:75280836-75280855 MS.gene002099:CDS 60.0%
! ATGGAACGGCGGCTTGGACT+TGG + chr2.3:75280842-75280861 MS.gene002099:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 75280520 75280876 75280520 ID=MS.gene002099
chr2.3 mRNA 75280520 75280876 75280520 ID=MS.gene002099.t1;Parent=MS.gene002099
chr2.3 exon 75280520 75280876 75280520 ID=MS.gene002099.t1.exon1;Parent=MS.gene002099.t1
chr2.3 CDS 75280520 75280876 75280520 ID=cds.MS.gene002099.t1;Parent=MS.gene002099.t1
Gene Sequence

>MS.gene002099

ATGATCCGCAAGAATGTTGTAGAAAGCATATTAGCGGAACGTGATATCTTAATTACAGTGCGCAATCCTTTTGTGGTTCGATTTTTCTATTCCTTCACATGTCGTGAGAACTTATATCTTGTCATGGAGTATCTCAATGGTGGAGACTTGTATTCTTTACTAAGGAATTTAGGATGTCTAGATGAGGAAGTGGCCCGTGTCTATATTGCTGAAGTGGTGCTTGCATTAGAGTATTTGCATTCTCTGCATGTGGTTCATCGTGACTTGAAGCCTGACAATTTATTGATTGCACATGATGGTCACATCAAGGAACAAGGAGTCAATGGAACGGCGGCTTGGACTTGGATTAGCTTTTAA
Protein sequence

>MS.gene002099.t1

MIRKNVVESILAERDILITVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKEQGVNGTAAWTWISF