AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002151

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002151.t1 MTR_2g008030 98.538 342 5 0 1 342 1 342 0.0 696
MS.gene002151.t1 MTR_6g035305 84.776 335 51 0 1 335 1 335 0.0 601
MS.gene002151.t1 MTR_7g066120 50.585 342 151 2 11 335 71 411 1.52e-116 343
MS.gene002151.t1 MTR_0776s0010 40.729 329 187 5 7 328 284 611 4.65e-84 278
MS.gene002151.t1 MTR_4g093620 42.258 310 156 6 32 331 87 383 7.81e-76 239
MS.gene002151.t1 MTR_3g070100 30.961 281 173 8 67 342 116 380 5.27e-23 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002151.t1 AT1G43670 80.826 339 65 0 1 339 1 339 0.0 584
MS.gene002151.t1 AT3G54050 50.588 340 152 3 11 335 79 417 1.80e-116 343
MS.gene002151.t1 AT3G54050 50.588 340 152 3 11 335 79 417 1.80e-116 343
MS.gene002151.t1 AT5G64380 40.881 318 168 8 32 339 89 396 6.92e-74 234
MS.gene002151.t1 AT3G55800 31.449 283 161 10 67 338 123 383 4.51e-23 99.4

Find 67 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCAATCACATTGTTCT+TGG 0.178736 2.2:+72037539 MS.gene002151:CDS
CACTATTGCATATAGATCTT+TGG 0.249832 2.2:+72039131 MS.gene002151:intron
ACTGACTTGCCACGCTGTGC+TGG 0.263816 2.2:-72038867 None:intergenic
CTTACCTTAGCTTTCCATTT+GGG 0.275310 2.2:-72040024 None:intergenic
CATAGTTGTGTTTGATCCTT+TGG 0.288689 2.2:+72038978 MS.gene002151:CDS
CCAAAGTCTCTTAGGTATAT+TGG 0.298619 2.2:+72039841 MS.gene002151:CDS
TATGCAGAATCCAAAGAAAA+TGG 0.326692 2.2:+72040811 MS.gene002151:CDS
TGTGCGTCCGCTGCTGATTA+AGG 0.328499 2.2:-72038664 None:intergenic
ATTGATTGTGGAGTTTCAAT+AGG 0.341565 2.2:+72039015 MS.gene002151:CDS
CACCATATAGCAATGTTCTA+TGG 0.354552 2.2:-72039970 None:intergenic
TCTTACCTTAGCTTTCCATT+TGG 0.373307 2.2:-72040025 None:intergenic
GTTCACCACCAAAGTCTCTT+AGG 0.374034 2.2:+72039833 MS.gene002151:CDS
CTGACTTGCCACGCTGTGCT+GGG 0.376754 2.2:-72038866 None:intergenic
TCGTAGCTTCCAAGGAATAT+TGG 0.381749 2.2:-72040763 None:intergenic
AATGCATGTACCTTGATGTT+TGG 0.391145 2.2:-72039497 None:intergenic
TTTGTGCTTAGCACAGGAAA+TGG 0.404030 2.2:+72039422 MS.gene002151:CDS
ATGCATGTACCTTGATGTTT+GGG 0.428381 2.2:-72039496 None:intergenic
TTTACACTTGATCCTTCCCT+TGG 0.433839 2.2:+72039455 MS.gene002151:CDS
GTCCATAGAACATTGCTATA+TGG 0.440321 2.2:+72039968 MS.gene002151:CDS
CCAATATACCTAAGAGACTT+TGG 0.448075 2.2:-72039841 None:intergenic
GCAGCTGGTTACTGCATGTA+TGG 0.456073 2.2:+72039224 MS.gene002151:CDS
CTGATTTGATGACAATAACT+AGG 0.457076 2.2:+72037462 MS.gene002151:CDS
AGCACAGGAAATGGAGTGAA+TGG 0.467256 2.2:+72039431 MS.gene002151:CDS
AACAAAACTCACTTGAACAT+TGG 0.470224 2.2:-72037741 None:intergenic
ATTGCAACCTGGGAGCAGTT+TGG 0.473530 2.2:+72039199 MS.gene002151:CDS
AACTCCACAATCAATGTTTG+AGG 0.474075 2.2:-72039007 None:intergenic
TGACTTGCCACGCTGTGCTG+GGG 0.480596 2.2:-72038865 None:intergenic
GATCGATCGCCAATATTCCT+TGG 0.483711 2.2:+72040754 MS.gene002151:CDS
GCTGATAAGAAAAGCCCAAA+TGG 0.486498 2.2:+72040010 MS.gene002151:CDS
GGGAGCAGTTTGGTAGCAGC+TGG 0.487734 2.2:+72039209 MS.gene002151:CDS
TGGTGTCTCCAGCAAGTCCT+AGG 0.492171 2.2:-72037721 None:intergenic
TCCAAAACTTACTTGGCCGT+TGG 0.497852 2.2:-72039681 None:intergenic
AAAATTTATTCTGTGAATGA+GGG 0.501287 2.2:+72039636 MS.gene002151:CDS
TTGCAGTTTGTGCTTAGCAC+AGG 0.508953 2.2:+72039416 MS.gene002151:intron
GTTGAAGATGCATTGCAACC+TGG 0.510015 2.2:+72039188 MS.gene002151:CDS
GTGCCTTCTTGTTTCAGAAG+AGG 0.512489 2.2:+72038821 MS.gene002151:intron
CAGTTCTGTTAGCATCTGCT+TGG 0.515272 2.2:-72037442 None:intergenic
TTGAAGATGCATTGCAACCT+GGG 0.517948 2.2:+72039189 MS.gene002151:CDS
TTCTAATGAAGTATTTGTGA+AGG 0.533564 2.2:+72038641 MS.gene002151:CDS
GTTGTGTTTGATCCTTTGGA+TGG 0.544716 2.2:+72038982 MS.gene002151:CDS
CAATTTCATCGTAGCTTCCA+AGG 0.546062 2.2:-72040771 None:intergenic
GACTTGCCACGCTGTGCTGG+GGG 0.552070 2.2:-72038864 None:intergenic
TGCTCCATCAAATATGACAT+TGG 0.555129 2.2:-72040405 None:intergenic
GGTTCCTCAAACATTGATTG+TGG 0.568496 2.2:+72039003 MS.gene002151:CDS
AACAATGTGATTGATGAGAA+TGG 0.568531 2.2:-72037534 None:intergenic
TCATATTTGATGGAGCAAGC+AGG 0.570588 2.2:+72040411 MS.gene002151:CDS
GAGTCAATATGAACTCTCCA+AGG 0.570901 2.2:-72039472 None:intergenic
TGTTTGTTCTTCTGTTAACA+AGG 0.573073 2.2:+72037571 MS.gene002151:CDS
ACTTCATAGATACCAAAGAA+AGG 0.574423 2.2:+72039612 MS.gene002151:intron
AGCTTTCACAGGAAAACAAA+GGG 0.576524 2.2:+72040440 MS.gene002151:CDS
GCAGGAGGTCAAGCTTTCAC+AGG 0.578987 2.2:+72040429 MS.gene002151:CDS
AGTCTCTTAGGTATATTGGC+AGG 0.582669 2.2:+72039845 MS.gene002151:CDS
CAACCTCTTCTGAAACAAGA+AGG 0.591219 2.2:-72038824 None:intergenic
CATGTATGGAAGCTCTTGCA+CGG 0.591600 2.2:+72039238 MS.gene002151:CDS
AAAGCCCAAATGGAAAGCTA+AGG 0.593648 2.2:+72040020 MS.gene002151:CDS
TTTGGTGGTGAACTGTCTTG+TGG 0.594367 2.2:-72039823 None:intergenic
GCTGCTACCAAACTGCTCCC+AGG 0.598305 2.2:-72039206 None:intergenic
ATTGACTCACCCAAACATCA+AGG 0.604776 2.2:+72039487 MS.gene002151:CDS
CATAGAACATTGCTATATGG+TGG 0.610102 2.2:+72039971 MS.gene002151:CDS
AATATGAACTCTCCAAGGGA+AGG 0.611205 2.2:-72039467 None:intergenic
AAGCTTTCACAGGAAAACAA+AGG 0.624169 2.2:+72040439 MS.gene002151:CDS
GTGAAGGCCTTAATCAGCAG+CGG 0.626415 2.2:+72038657 MS.gene002151:CDS
ATATACCTAAGAGACTTTGG+TGG 0.639800 2.2:-72039838 None:intergenic
AGTCAATATGAACTCTCCAA+GGG 0.668311 2.2:-72039471 None:intergenic
ATGTTTGAGGAACCATCCAA+AGG 0.670132 2.2:-72038994 None:intergenic
TCAAAGTATGCTGAATCACG+TGG 0.673339 2.2:+72037503 MS.gene002151:CDS
TATTTGATGGAGCAAGCAGG+AGG 0.695622 2.2:+72040414 MS.gene002151:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAACATTCAATTAA+TGG - chr2.2:72037670-72037689 None:intergenic 10.0%
!! TAAATTAACATAAAGTTATT+AGG + chr2.2:72039542-72039561 MS.gene002151:intron 10.0%
!! TTTATTTAATATGAGTTTAA+TGG + chr2.2:72037900-72037919 MS.gene002151:intron 10.0%
!!! TTGATAAATATAGAATATTT+TGG - chr2.2:72038894-72038913 None:intergenic 10.0%
!! AATATTATTTCAGATTTAGA+TGG - chr2.2:72037862-72037881 None:intergenic 15.0%
!! ATAATATTACATGGATATAA+AGG - chr2.2:72038085-72038104 None:intergenic 15.0%
!! ATGTTTAAACTAATAACTTA+TGG + chr2.2:72040336-72040355 MS.gene002151:intron 15.0%
!! GTTGAAAATATAATATTACA+TGG - chr2.2:72038094-72038113 None:intergenic 15.0%
!!! TTATAATTTTTTTTACTGAC+AGG + chr2.2:72037682-72037701 MS.gene002151:intron 15.0%
!! AAAAATTTATTCTGTGAATG+AGG + chr2.2:72039635-72039654 MS.gene002151:CDS 20.0%
!! AAAATTTATTCTGTGAATGA+GGG + chr2.2:72039636-72039655 MS.gene002151:CDS 20.0%
!! AAATTTGACTGTAAATTATC+AGG + chr2.2:72040364-72040383 MS.gene002151:intron 20.0%
!! AATAAAATGAAGAAACTTGA+AGG - chr2.2:72039910-72039929 None:intergenic 20.0%
!! AATTTGACTGTAAATTATCA+GGG + chr2.2:72040365-72040384 MS.gene002151:intron 20.0%
!! ACGATTAAATAACTGATATA+AGG - chr2.2:72040642-72040661 None:intergenic 20.0%
!! TAACATTCTATTAGCATAAT+CGG - chr2.2:72039275-72039294 None:intergenic 20.0%
!! TAGAAATTAGTACTAAGATA+TGG - chr2.2:72037978-72037997 None:intergenic 20.0%
!!! AAATCGAATTTAAAGCTAAT+TGG - chr2.2:72038207-72038226 None:intergenic 20.0%
!!! AAATTGCATTTTACTAAATC+AGG - chr2.2:72038789-72038808 None:intergenic 20.0%
!!! AAGGAATTCAAGTATTTTAA+AGG - chr2.2:72038286-72038305 None:intergenic 20.0%
!!! AAGTTATTAGGTTTTTACTT+AGG + chr2.2:72039554-72039573 MS.gene002151:intron 20.0%
!!! AGGAATTCAAGTATTTTAAA+GGG - chr2.2:72038285-72038304 None:intergenic 20.0%
!!! CTTTATTTTGTTCTTTTTGT+TGG + chr2.2:72038710-72038729 MS.gene002151:intron 20.0%
!!! GAATAAATTTTTCCTTTCTT+TGG - chr2.2:72039627-72039646 None:intergenic 20.0%
!!! TAAAATGCAATTTTTTGCTT+TGG + chr2.2:72038796-72038815 MS.gene002151:intron 20.0%
!!! TGATTCATATGCATTTTATT+TGG + chr2.2:72038751-72038770 MS.gene002151:intron 20.0%
! AAAATATAGCAATCAAGCTT+GGG - chr2.2:72039071-72039090 None:intergenic 25.0%
! AACTTTATGTAGTTTGATCT+TGG + chr2.2:72039880-72039899 MS.gene002151:intron 25.0%
! ACATATCATATAACACAACT+CGG - chr2.2:72040320-72040339 None:intergenic 25.0%
! ACTACATATCCCAATAATTT+AGG - chr2.2:72040236-72040255 None:intergenic 25.0%
! ATAGTGGTGAATAGAAAAAT+AGG - chr2.2:72038587-72038606 None:intergenic 25.0%
! CACGTAACATTCTAAATTAA+AGG - chr2.2:72037781-72037800 None:intergenic 25.0%
! CAGTTATTTAATCGTTGAAT+TGG + chr2.2:72040647-72040666 MS.gene002151:intron 25.0%
! CCAAGTATTATAAGTTTCTA+TGG - chr2.2:72038492-72038511 None:intergenic 25.0%
! CCATAGAAACTTATAATACT+TGG + chr2.2:72038489-72038508 MS.gene002151:intron 25.0%
! TAAAATATAGCAATCAAGCT+TGG - chr2.2:72039072-72039091 None:intergenic 25.0%
! TAGTGGTGAATAGAAAAATA+GGG - chr2.2:72038586-72038605 None:intergenic 25.0%
! TCACACAAAAAAGATTTAGA+TGG - chr2.2:72037831-72037850 None:intergenic 25.0%
! TTCTATTCACCACTATTTAA+GGG + chr2.2:72038591-72038610 MS.gene002151:intron 25.0%
! TTTCTATTCACCACTATTTA+AGG + chr2.2:72038590-72038609 MS.gene002151:intron 25.0%
!! AATTCAGATTCCTTTTCTAT+CGG - chr2.2:72040135-72040154 None:intergenic 25.0%
!! GATGTGTATTGAATTTTCAT+TGG + chr2.2:72038018-72038037 MS.gene002151:intron 25.0%
!! GTATTGAATTTTCATTGGAT+TGG + chr2.2:72038023-72038042 MS.gene002151:intron 25.0%
!! TTCTAATGAAGTATTTGTGA+AGG + chr2.2:72038641-72038660 MS.gene002151:CDS 25.0%
!! TTTTCCAATGTCATATTTGA+TGG + chr2.2:72040401-72040420 MS.gene002151:CDS 25.0%
!!! ACCTAAGGACATTTTAAAAT+CGG + chr2.2:72040163-72040182 MS.gene002151:intron 25.0%
!!! TCATACGATAATTTTTTTGC+AGG + chr2.2:72040702-72040721 MS.gene002151:intron 25.0%
AAATACTTCCAAAACATGTG+CGG + chr2.2:72038176-72038195 MS.gene002151:intron 30.0%
AAATGATTCTCCGATAGAAA+AGG + chr2.2:72040122-72040141 MS.gene002151:intron 30.0%
AACAAAACTCACTTGAACAT+TGG - chr2.2:72037744-72037763 None:intergenic 30.0%
AACAATGTGATTGATGAGAA+TGG - chr2.2:72037537-72037556 None:intergenic 30.0%
AACTTGATGTAACAGAGATA+AGG + chr2.2:72038246-72038265 MS.gene002151:intron 30.0%
ACATTTCACAAAGTTTCAAG+AGG + chr2.2:72038536-72038555 MS.gene002151:intron 30.0%
ACTTCATAGATACCAAAGAA+AGG + chr2.2:72039612-72039631 MS.gene002151:intron 30.0%
ATTGATTGTGGAGTTTCAAT+AGG + chr2.2:72039015-72039034 MS.gene002151:CDS 30.0%
CAATTTATTCGATCAGAATC+AGG - chr2.2:72039389-72039408 None:intergenic 30.0%
CACTATTGCATATAGATCTT+TGG + chr2.2:72039131-72039150 MS.gene002151:intron 30.0%
CAGAATTTCCAAAACTTACT+TGG - chr2.2:72039691-72039710 None:intergenic 30.0%
GAAAAATGCACAATACAGTA+TGG + chr2.2:72039937-72039956 MS.gene002151:intron 30.0%
GTTGGATGTTGATGTAAAAA+TGG - chr2.2:72037938-72037957 None:intergenic 30.0%
TATGCAGAATCCAAAGAAAA+TGG + chr2.2:72040811-72040830 MS.gene002151:CDS 30.0%
TCATTTGATACTACATCTGA+TGG + chr2.2:72040670-72040689 MS.gene002151:intron 30.0%
TCTATTCACCACTATTTAAG+GGG + chr2.2:72038592-72038611 MS.gene002151:intron 30.0%
TGTTTGTTCTTCTGTTAACA+AGG + chr2.2:72037571-72037590 MS.gene002151:CDS 30.0%
TTAAAATGTCCTTAGGTCTT+GGG - chr2.2:72040160-72040179 None:intergenic 30.0%
TTCATGTTAACTCAAGAATC+AGG - chr2.2:72039734-72039753 None:intergenic 30.0%
TTCTGATCGAATAAATTGCA+CGG + chr2.2:72039391-72039410 MS.gene002151:intron 30.0%
! CTGATTTGATGACAATAACT+AGG + chr2.2:72037462-72037481 MS.gene002151:CDS 30.0%
! GATCGATCATGTATTTTCTT+AGG - chr2.2:72040742-72040761 None:intergenic 30.0%
! TACATCAAGTTTGCTTAAAC+CGG - chr2.2:72038237-72038256 None:intergenic 30.0%
! TTTAAAATGTCCTTAGGTCT+TGG - chr2.2:72040161-72040180 None:intergenic 30.0%
! TTTTCTTTTCTCTAATGCAC+AGG - chr2.2:72038382-72038401 None:intergenic 30.0%
!! ACACATCACTCAGTTTTATA+AGG - chr2.2:72038005-72038024 None:intergenic 30.0%
!! TATGTATGGAGTATTGCAAA+CGG - chr2.2:72040260-72040279 None:intergenic 30.0%
!!! AATTTTTTTTACTGACAGGC+TGG + chr2.2:72037686-72037705 MS.gene002151:intron 30.0%
!!! TCCGATTTTAAAATGTCCTT+AGG - chr2.2:72040167-72040186 None:intergenic 30.0%
AACTCCACAATCAATGTTTG+AGG - chr2.2:72039010-72039029 None:intergenic 35.0%
AAGCTTTCACAGGAAAACAA+AGG + chr2.2:72040439-72040458 MS.gene002151:CDS 35.0%
AATGCATGTACCTTGATGTT+TGG - chr2.2:72039500-72039519 None:intergenic 35.0%
ACATTTGATCTAGCATCCTT+AGG + chr2.2:72040082-72040101 MS.gene002151:intron 35.0%
ACTAAGATATGGAACTAGTG+TGG - chr2.2:72037967-72037986 None:intergenic 35.0%
AGCTTTCACAGGAAAACAAA+GGG + chr2.2:72040440-72040459 MS.gene002151:CDS 35.0%
AGTCAATATGAACTCTCCAA+GGG - chr2.2:72039474-72039493 None:intergenic 35.0%
ATATACCTAAGAGACTTTGG+TGG - chr2.2:72039841-72039860 None:intergenic 35.0%
ATGCATGTACCTTGATGTTT+GGG - chr2.2:72039499-72039518 None:intergenic 35.0%
ATGGAAATAGAGACACTTGA+AGG - chr2.2:72038473-72038492 None:intergenic 35.0%
CACCATATAGCAATGTTCTA+TGG - chr2.2:72039973-72039992 None:intergenic 35.0%
CATAGAACATTGCTATATGG+TGG + chr2.2:72039971-72039990 MS.gene002151:CDS 35.0%
CATAGTTGTGTTTGATCCTT+TGG + chr2.2:72038978-72038997 MS.gene002151:CDS 35.0%
CCAAAGTCTCTTAGGTATAT+TGG + chr2.2:72039841-72039860 MS.gene002151:CDS 35.0%
CCAATATACCTAAGAGACTT+TGG - chr2.2:72039844-72039863 None:intergenic 35.0%
CTATTCACCACTATTTAAGG+GGG + chr2.2:72038593-72038612 MS.gene002151:intron 35.0%
CTCATCAATCACATTGTTCT+TGG + chr2.2:72037539-72037558 MS.gene002151:CDS 35.0%
GCATTATGTTGCAGCTAAAT+TGG + chr2.2:72039515-72039534 MS.gene002151:intron 35.0%
GGTAAGACTGTGATATACTT+TGG + chr2.2:72040041-72040060 MS.gene002151:intron 35.0%
GTCCATAGAACATTGCTATA+TGG + chr2.2:72039968-72039987 MS.gene002151:CDS 35.0%
GTTCGTGGACCTAAATTATT+GGG + chr2.2:72040224-72040243 MS.gene002151:intron 35.0%
TCCATACATAGATGAGAACT+TGG + chr2.2:72040270-72040289 MS.gene002151:intron 35.0%
TGAGTGTGTAATTCACTTCA+AGG - chr2.2:72038305-72038324 None:intergenic 35.0%
TGCTCCATCAAATATGACAT+TGG - chr2.2:72040408-72040427 None:intergenic 35.0%
TGGAAATAGAGACACTTGAA+GGG - chr2.2:72038472-72038491 None:intergenic 35.0%
! CTTACCTTAGCTTTCCATTT+GGG - chr2.2:72040027-72040046 None:intergenic 35.0%
! TCTTACCTTAGCTTTCCATT+TGG - chr2.2:72040028-72040047 None:intergenic 35.0%
!! ATGTATGGAGTATTGCAAAC+GGG - chr2.2:72040259-72040278 None:intergenic 35.0%
AAAGCCCAAATGGAAAGCTA+AGG + chr2.2:72040020-72040039 MS.gene002151:CDS 40.0%
AATATGAACTCTCCAAGGGA+AGG - chr2.2:72039470-72039489 None:intergenic 40.0%
ACTAACTCTCCTAAGACCTA+AGG - chr2.2:72040101-72040120 None:intergenic 40.0%
AGTCTCTTAGGTATATTGGC+AGG + chr2.2:72039845-72039864 MS.gene002151:CDS 40.0%
ATCTAGCATCCTTAGGTCTT+AGG + chr2.2:72040089-72040108 MS.gene002151:intron 40.0%
ATGTTTGAGGAACCATCCAA+AGG - chr2.2:72038997-72039016 None:intergenic 40.0%
CAAAAACTGGGATGAACCAA+CGG + chr2.2:72039665-72039684 MS.gene002151:CDS 40.0%
CAATTTCATCGTAGCTTCCA+AGG - chr2.2:72040774-72040793 None:intergenic 40.0%
GAGTCAATATGAACTCTCCA+AGG - chr2.2:72039475-72039494 None:intergenic 40.0%
GCATCTCTGCATCTTCAATA+TGG + chr2.2:72040545-72040564 MS.gene002151:intron 40.0%
GCCAAGTTCTCATCTATGTA+TGG - chr2.2:72040274-72040293 None:intergenic 40.0%
GCTGATAAGAAAAGCCCAAA+TGG + chr2.2:72040010-72040029 MS.gene002151:CDS 40.0%
GGTTCGTGGACCTAAATTAT+TGG + chr2.2:72040223-72040242 MS.gene002151:intron 40.0%
GTTGTGTTTGATCCTTTGGA+TGG + chr2.2:72038982-72039001 MS.gene002151:CDS 40.0%
TATGGGCCTAATTCTTGAGT+CGG - chr2.2:72040200-72040219 None:intergenic 40.0%
TCAAAGTATGCTGAATCACG+TGG + chr2.2:72037503-72037522 MS.gene002151:CDS 40.0%
TCATATTTGATGGAGCAAGC+AGG + chr2.2:72040411-72040430 MS.gene002151:CDS 40.0%
TCGTAGCTTCCAAGGAATAT+TGG - chr2.2:72040766-72040785 None:intergenic 40.0%
TTGAAGATGCATTGCAACCT+GGG + chr2.2:72039189-72039208 MS.gene002151:CDS 40.0%
TTTACACTTGATCCTTCCCT+TGG + chr2.2:72039455-72039474 MS.gene002151:CDS 40.0%
TTTGTGCTTAGCACAGGAAA+TGG + chr2.2:72039422-72039441 MS.gene002151:CDS 40.0%
! ATCAAGTTTGCTTAAACCGG+TGG - chr2.2:72038234-72038253 None:intergenic 40.0%
! ATTGACTCACCCAAACATCA+AGG + chr2.2:72039487-72039506 MS.gene002151:CDS 40.0%
! GGTTCCTCAAACATTGATTG+TGG + chr2.2:72039003-72039022 MS.gene002151:CDS 40.0%
! TAAATTCGATTTGCCTCCAC+CGG + chr2.2:72038215-72038234 MS.gene002151:intron 40.0%
! TTGGGCTTTTCTTATCAGCA+GGG - chr2.2:72040009-72040028 None:intergenic 40.0%
! TTTGGGCTTTTCTTATCAGC+AGG - chr2.2:72040010-72040029 None:intergenic 40.0%
! TTTTTACTGACAGGCTGGAT+TGG + chr2.2:72037691-72037710 MS.gene002151:intron 40.0%
!! CAACCTCTTCTGAAACAAGA+AGG - chr2.2:72038827-72038846 None:intergenic 40.0%
!!! TTTTTTGCAGGCACTTGACT+TGG + chr2.2:72040714-72040733 MS.gene002151:intron 40.0%
AGCACAGGAAATGGAGTGAA+TGG + chr2.2:72039431-72039450 MS.gene002151:CDS 45.0%
ATGAGGGAAACGCCAAAAAC+TGG + chr2.2:72039652-72039671 MS.gene002151:CDS 45.0%
CAGTTCTGTTAGCATCTGCT+TGG - chr2.2:72037445-72037464 None:intergenic 45.0%
CATGTATGGAAGCTCTTGCA+CGG + chr2.2:72039238-72039257 MS.gene002151:CDS 45.0%
CTGAATTCTCCCAAGACCTA+AGG + chr2.2:72040148-72040167 MS.gene002151:intron 45.0%
GAACTAGTGTGGTATCTCGT+TGG - chr2.2:72037956-72037975 None:intergenic 45.0%
GATCGATCGCCAATATTCCT+TGG + chr2.2:72040754-72040773 MS.gene002151:CDS 45.0%
GCAAAAATCCTAGGACTTGC+TGG + chr2.2:72037713-72037732 MS.gene002151:CDS 45.0%
GTTCACCACCAAAGTCTCTT+AGG + chr2.2:72039833-72039852 MS.gene002151:CDS 45.0%
GTTGAAGATGCATTGCAACC+TGG + chr2.2:72039188-72039207 MS.gene002151:CDS 45.0%
TATTTGATGGAGCAAGCAGG+AGG + chr2.2:72040414-72040433 MS.gene002151:CDS 45.0%
TCAAGAATTAGGCCCATAGC+AGG + chr2.2:72040202-72040221 MS.gene002151:intron 45.0%
TCCAAAACTTACTTGGCCGT+TGG - chr2.2:72039684-72039703 None:intergenic 45.0%
TGAGGGAAACGCCAAAAACT+GGG + chr2.2:72039653-72039672 MS.gene002151:CDS 45.0%
TTCACCACTATTTAAGGGGG+AGG + chr2.2:72038596-72038615 MS.gene002151:intron 45.0%
TTGCAGTTTGTGCTTAGCAC+AGG + chr2.2:72039416-72039435 MS.gene002151:intron 45.0%
! AAGTTTGCTTAAACCGGTGG+AGG - chr2.2:72038231-72038250 None:intergenic 45.0%
! ACCAACGGCCAAGTAAGTTT+TGG + chr2.2:72039680-72039699 MS.gene002151:intron 45.0%
! GTGCCTTCTTGTTTCAGAAG+AGG + chr2.2:72038821-72038840 MS.gene002151:intron 45.0%
!! GCTGGATTGGCAAAAATCCT+AGG + chr2.2:72037704-72037723 MS.gene002151:CDS 45.0%
!! TCCTTGCCGACTCAAGAATT+AGG + chr2.2:72040191-72040210 MS.gene002151:intron 45.0%
!! TTTGGTGGTGAACTGTCTTG+TGG - chr2.2:72039826-72039845 None:intergenic 45.0%
!!! CGTTGGTTCATCCCAGTTTT+TGG - chr2.2:72039667-72039686 None:intergenic 45.0%
ATTGCAACCTGGGAGCAGTT+TGG + chr2.2:72039199-72039218 MS.gene002151:CDS 50.0%
GCAGCTGGTTACTGCATGTA+TGG + chr2.2:72039224-72039243 MS.gene002151:CDS 50.0%
GCCTAATTCTTGAGTCGGCA+AGG - chr2.2:72040195-72040214 None:intergenic 50.0%
GGGGGAGGAGCAAAAGAAAT+TGG + chr2.2:72038611-72038630 MS.gene002151:intron 50.0%
GTGAAGGCCTTAATCAGCAG+CGG + chr2.2:72038657-72038676 MS.gene002151:CDS 50.0%
TAGGTCCACGAACCTGCTAT+GGG - chr2.2:72040217-72040236 None:intergenic 50.0%
TGCTCCTCCCCCTTAAATAG+TGG - chr2.2:72038603-72038622 None:intergenic 50.0%
TTAGGTCCACGAACCTGCTA+TGG - chr2.2:72040218-72040237 None:intergenic 50.0%
! TGGTGTGTCCGCACATGTTT+TGG - chr2.2:72038187-72038206 None:intergenic 50.0%
GCAGGAGGTCAAGCTTTCAC+AGG + chr2.2:72040429-72040448 MS.gene002151:CDS 55.0%
TGGTGTCTCCAGCAAGTCCT+AGG - chr2.2:72037724-72037743 None:intergenic 55.0%
TTAGGCCCATAGCAGGTTCG+TGG + chr2.2:72040209-72040228 MS.gene002151:intron 55.0%
! TGTGCGTCCGCTGCTGATTA+AGG - chr2.2:72038667-72038686 None:intergenic 55.0%
GCTGCTACCAAACTGCTCCC+AGG - chr2.2:72039209-72039228 None:intergenic 60.0%
! CTGACTTGCCACGCTGTGCT+GGG - chr2.2:72038869-72038888 None:intergenic 60.0%
! GGGAGCAGTTTGGTAGCAGC+TGG + chr2.2:72039209-72039228 MS.gene002151:CDS 60.0%
! TGACTTGCCACGCTGTGCTG+GGG - chr2.2:72038868-72038887 None:intergenic 60.0%
!! ACTGACTTGCCACGCTGTGC+TGG - chr2.2:72038870-72038889 None:intergenic 60.0%
ATTGTGCCCCCAGCACAGCG+TGG + chr2.2:72038858-72038877 MS.gene002151:CDS 65.0%
GACTTGCCACGCTGTGCTGG+GGG - chr2.2:72038867-72038886 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 72037434 72040840 72037434 ID=MS.gene002151
chr2.2 mRNA 72037434 72040840 72037434 ID=MS.gene002151.t1;Parent=MS.gene002151
chr2.2 exon 72037434 72037592 72037434 ID=MS.gene002151.t1.exon1;Parent=MS.gene002151.t1
chr2.2 CDS 72037434 72037592 72037434 ID=cds.MS.gene002151.t1;Parent=MS.gene002151.t1
chr2.2 exon 72037704 72037751 72037704 ID=MS.gene002151.t1.exon2;Parent=MS.gene002151.t1
chr2.2 CDS 72037704 72037751 72037704 ID=cds.MS.gene002151.t1;Parent=MS.gene002151.t1
chr2.2 exon 72038612 72038686 72038612 ID=MS.gene002151.t1.exon3;Parent=MS.gene002151.t1
chr2.2 CDS 72038612 72038686 72038612 ID=cds.MS.gene002151.t1;Parent=MS.gene002151.t1
chr2.2 exon 72038822 72038883 72038822 ID=MS.gene002151.t1.exon4;Parent=MS.gene002151.t1
chr2.2 CDS 72038822 72038883 72038822 ID=cds.MS.gene002151.t1;Parent=MS.gene002151.t1
chr2.2 exon 72038975 72039041 72038975 ID=MS.gene002151.t1.exon5;Parent=MS.gene002151.t1
chr2.2 CDS 72038975 72039041 72038975 ID=cds.MS.gene002151.t1;Parent=MS.gene002151.t1
chr2.2 exon 72039146 72039259 72039146 ID=MS.gene002151.t1.exon6;Parent=MS.gene002151.t1
chr2.2 CDS 72039146 72039259 72039146 ID=cds.MS.gene002151.t1;Parent=MS.gene002151.t1
chr2.2 exon 72039422 72039508 72039422 ID=MS.gene002151.t1.exon7;Parent=MS.gene002151.t1
chr2.2 CDS 72039422 72039508 72039422 ID=cds.MS.gene002151.t1;Parent=MS.gene002151.t1
chr2.2 exon 72039621 72039691 72039621 ID=MS.gene002151.t1.exon8;Parent=MS.gene002151.t1
chr2.2 CDS 72039621 72039691 72039621 ID=cds.MS.gene002151.t1;Parent=MS.gene002151.t1
chr2.2 exon 72039801 72039866 72039801 ID=MS.gene002151.t1.exon9;Parent=MS.gene002151.t1
chr2.2 CDS 72039801 72039866 72039801 ID=cds.MS.gene002151.t1;Parent=MS.gene002151.t1
chr2.2 exon 72039955 72040041 72039955 ID=MS.gene002151.t1.exon10;Parent=MS.gene002151.t1
chr2.2 CDS 72039955 72040041 72039955 ID=cds.MS.gene002151.t1;Parent=MS.gene002151.t1
chr2.2 exon 72040386 72040461 72040386 ID=MS.gene002151.t1.exon11;Parent=MS.gene002151.t1
chr2.2 CDS 72040386 72040461 72040386 ID=cds.MS.gene002151.t1;Parent=MS.gene002151.t1
chr2.2 exon 72040724 72040840 72040724 ID=MS.gene002151.t1.exon12;Parent=MS.gene002151.t1
chr2.2 CDS 72040724 72040840 72040724 ID=cds.MS.gene002151.t1;Parent=MS.gene002151.t1
Gene Sequence

>MS.gene002151

ATGGATCACCAAGCAGATGCTAACAGAACTGATTTGATGACAATAACTAGGTTTGTTCTGAATGAGCAATCAAAGTATGCTGAATCACGTGGAGATTTCACCATTCTCATCAATCACATTGTTCTTGGCTGCAAATTTGTTTGTTCTTCTGTTAACAAGGTACACACACACTCTCAAGTCTCAATTCATTTTGATTAGACAAAATTCACAATTACTTTTGTTTTTTATTTTTACCATTAATTGAATGTTTATAATTTTTTTTACTGACAGGCTGGATTGGCAAAAATCCTAGGACTTGCTGGAGACACCAATGTTCAAGTGAGTTTTGTTTTTTATAATATTTTCCTTTAATTTAGAATGTTACGTGTTCGTGTTAATATGCTACTTTGTCACACCATCTAAATCTTTTTTGTGTGATAGCGACACCATCTAAATCTGAAATAATATTATGACAAAAAAGACTTTATTTATTTAATATGAGTTTAATGGACATACACTAAACCATTTTTACATCAACATCCAACGAGATACCACACTAGTTCCATATCTTAGTACTAATTTCTACTATCCTTATAAAACTGAGTGATGTGTATTGAATTTTCATTGGATTGGATGTTAGTGTACGTAAAACAATTTACACTTGCATGTCCTTTATATCCATGTAATATTATATTTTCAACTGTAACTCTTTTAGTAGTTAAAATTCACATGAATCAATTTTTGTTTATGATGATAATTGCGCAAATACTTCCAAAACATGTGCGGACACACCAATTAGCTTTAAATTCGATTTGCCTCCACCGGTTTAAGCAAACTTGATGTAACAGAGATAAGGAAAAGAGTGAATTCCCTTTAAAATACTTGAATTCCTTGAAGTGAATTACACACTCACTTACAACGTATTGATAGATGAGAGTTTAGTGAATAAAAGTTTCATCAATTACACCTGTGCATTAGAGAAAAGAAAAAATAATTTAGAAATGATTTTCGCATAACTTTAGATCATGAAAGTATGAATTTCATATTGTTTTTCATCCCTTCAAGTGTCTCTATTTCCATAGAAACTTATAATACTTGGTGAAAGAGAAATACTCATCAAATAACATTTCACAAAGTTTCAAGAGGTTGATATAAGTATATATGTAACATCCCTATTTTTCTATTCACCACTATTTAAGGGGGAGGAGCAAAAGAAATTGGATGTGATTTCTAATGAAGTATTTGTGAAGGCCTTAATCAGCAGCGGACGCACAGTAAGTCTATACACTCGAGTTTGCTTTATTTTGTTCTTTTTGTTGGTATACGTTTAAGTTTGATTGATTCATATGCATTTTATTTGGCATTGTTTTGTTCCTGATTTAGTAAAATGCAATTTTTTGCTTTGGCAGTGCCTTCTTGTTTCAGAAGAGGTTGACGATGCTATCATTGTGCCCCCAGCACAGCGTGGCAAGTCAGTTCCAAAATATTCTATATTTATCAAATCACACATGATCATATTAATATTCATGTGACATTAACAAATTTTCTTTTTGATTTTGAAGATACATAGTTGTGTTTGATCCTTTGGATGGTTCCTCAAACATTGATTGTGGAGTTTCAATAGGAACTGTAAGAATTTTTCTTTTTTATTTTATCCCAAGCTTGATTGCTATATTTTAAATCATCAAAACAGAAATCATACTAAAATCTAGCATTTTCACTATTGCATATAGATCTTTGGTATTTACACAGTGAAAGATACAACTGAAGTTAGCGTTGAAGATGCATTGCAACCTGGGAGCAGTTTGGTAGCAGCTGGTTACTGCATGTATGGAAGCTCTTGCACGGTAAAACTAGCACCGATTATGCTAATAGAATGTTATGAAGTTTTTCTTTTAACTATTTGATATTTACATTTCACAATTTGCTTTCATTTTTATTATGAAATTGAAATATTTTTCATGTCATAAATACCTGATTCTGATCGAATAAATTGCACGGATTTGCAGTTTGTGCTTAGCACAGGAAATGGAGTGAATGGTTTTACACTTGATCCTTCCCTTGGAGAGTTCATATTGACTCACCCAAACATCAAGGTACATGCATTATGTTGCAGCTAAATTGGTAAATAAATTAACATAAAGTTATTAGGTTTTTACTTAGGCAATTCTGAATTTTATTTTCTGTAACGTGCGTGTTACTTCATAGATACCAAAGAAAGGAAAAATTTATTCTGTGAATGAGGGAAACGCCAAAAACTGGGATGAACCAACGGCCAAGTAAGTTTTGGAAATTCTGTTCTCGAGTACTATTTGAAACCTGATTCTTGAGTTAACATGAAACAATTGAGCTAATTTTCAAATGAATCTTTCGAACTTTGTTTCGTAGATACGTAGAAAATTGCAAGTTTCCACAAGACAGTTCACCACCAAAGTCTCTTAGGTATATTGGCAGGTATATGATTCTGAACTTTATGTAGTTTGATCTTGGTTTTCCTTCAAGTTTCTTCATTTTATTTGCTAACGAAAAATGCACAATACAGTATGGTAGCTGATGTCCATAGAACATTGCTATATGGTGGTATATTCATGTACCCTGCTGATAAGAAAAGCCCAAATGGAAAGCTAAGGTAAGACTGTGATATACTTTGGTGTGTCTATTTGTAATTAACATTTGATCTAGCATCCTTAGGTCTTAGGAGAGTTAGTAAAATGATTCTCCGATAGAAAAGGAATCTGAATTCTCCCAAGACCTAAGGACATTTTAAAATCGGACATTTCCTTGCCGACTCAAGAATTAGGCCCATAGCAGGTTCGTGGACCTAAATTATTGGGATATGTAGTCCCGTTTGCAATACTCCATACATAGATGAGAACTTGGCGAATTCTTATCTGTTTTAATTGACCGAGTTGTGTTATATGATATGTTTAAACTAATAACTTATGGATATGAAATTTGACTGTAAATTATCAGGGTTCTGTATGAAGTTTTTCCAATGTCATATTTGATGGAGCAAGCAGGAGGTCAAGCTTTCACAGGAAAACAAAGGGTATTACACTTTTTCTTTGCACTATTAGTTTATATTGCTACAAAACTCTTTAGTTGCAACACTTCAATTTGTTACTCTCTCATGCATCTCTGCATCTTCAATATGGTATACTGTATCTAAGTTTAAATAAACACGAATCATACTTTTTTTTTATACTATCATGAATCATACTTTATACCTTATATCAGTTATTTAATCGTTGAATTGGTCATTTGATACTACATCTGATGGATCTCATGTTCATACGATAATTTTTTTGCAGGCACTTGACTTGGTTCCTAAGAAAATACATGATCGATCGCCAATATTCCTTGGAAGCTACGATGAAATTGAGCATATAAAAGAGCTTTATGCAGAATCCAAAGAAAATGGTGCATGA
Protein sequence

>MS.gene002151.t1

MDHQADANRTDLMTITRFVLNEQSKYAESRGDFTILINHIVLGCKFVCSSVNKAGLAKILGLAGDTNVQGEEQKKLDVISNEVFVKALISSGRTCLLVSEEVDDAIIVPPAQRGKYIVVFDPLDGSSNIDCGVSIGTIFGIYTVKDTTEVSVEDALQPGSSLVAAGYCMYGSSCTFVLSTGNGVNGFTLDPSLGEFILTHPNIKIPKKGKIYSVNEGNAKNWDEPTAKYVENCKFPQDSSPPKSLRYIGSMVADVHRTLLYGGIFMYPADKKSPNGKLRVLYEVFPMSYLMEQAGGQAFTGKQRALDLVPKKIHDRSPIFLGSYDEIEHIKELYAESKENGA