AlfalfaGEDB | MS.gene002196

M. sativa cultivar XinJiangDaYe / MS.gene002196

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002196.t1	XP_003593190.2	97.2	389	11	0	1	389	19	407	1.00E-188	669.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002196.t1	O48788	42.1	316	176	4	75	389	312	621	4.4e-63	243.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002196.t1	G7INV2	97.2	389	11	0	1	389	1	389	7.4e-189	669.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002196.t1	MTR_2g008740	97.172	389	11	0	1	389	1	389	0.0	791
MS.gene002196.t1	MTR_8g107470	42.308	312	175	3	83	394	346	652	5.06e-80	259
MS.gene002196.t1	MTR_4g113100	42.949	312	170	5	85	394	319	624	1.15e-77	253
MS.gene002196.t1	MTR_3g093710	38.592	355	200	6	37	388	276	615	1.78e-76	249
MS.gene002196.t1	MTR_1g061590	40.132	304	171	2	95	388	345	647	1.14e-75	248
MS.gene002196.t1	MTR_1g110280	38.315	368	216	5	27	388	276	638	8.83e-75	246
MS.gene002196.t1	MTR_3g062500	42.809	299	165	5	93	389	334	628	1.71e-74	244
MS.gene002196.t1	MTR_3g062500	42.809	299	165	5	93	389	344	638	2.30e-74	244
MS.gene002196.t1	MTR_5g075630	39.167	360	201	8	34	389	284	629	2.37e-74	244
MS.gene002196.t1	MTR_8g101260	42.759	290	164	2	101	389	330	618	3.08e-73	241

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002196.t1	AT2G26730	42.532	308	170	4	83	389	320	621	6.78e-77	251
MS.gene002196.t1	AT2G36570	39.818	329	180	5	77	388	319	646	1.25e-73	243
MS.gene002196.t1	AT4G31250	36.709	395	217	6	27	389	249	642	3.09e-73	242
MS.gene002196.t1	AT1G68400	37.565	386	217	8	19	390	264	639	7.93e-73	241
MS.gene002196.t1	AT5G58300	41.562	320	177	7	72	388	318	630	8.60e-72	238
MS.gene002196.t1	AT5G58300	41.562	320	177	7	72	388	318	630	8.60e-72	238
MS.gene002196.t1	AT5G58300	41.562	320	177	7	72	388	318	630	8.60e-72	238
MS.gene002196.t1	AT3G17840	36.927	371	214	9	34	389	275	640	1.12e-70	234
MS.gene002196.t1	AT1G48480	35.925	373	214	9	34	388	278	643	3.23e-68	228
MS.gene002196.t1	AT3G02880	38.462	299	177	5	95	391	326	619	1.11e-65	221

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Find 84 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTCTTTACAACAATGGT+AGG	0.620331	2.2:+71519157	None:intergenic
AAGACTTCAAATTTCCATGA+GGG	0.585520	2.2:+71518463	None:intergenic
AAGAGGATAGAGATAGGAGA+AGG	0.471995	2.2:-71519331	MS.gene002196:CDS
AAGCTCAACAGAATAGTCAA+AGG	0.628071	2.2:-71519406	MS.gene002196:CDS
AATCTTGAGTTCCAATTGAA+TGG	0.366265	2.2:+71518555	None:intergenic
AATTATGGGGAATAGTTATA+AGG	0.391590	2.2:-71519197	MS.gene002196:CDS
ACCAATAGCAGCTCAACATA+TGG	0.481028	2.2:-71518370	MS.gene002196:CDS
ACCATATGTTGAGCTGCTAT+TGG	0.420502	2.2:+71518369	None:intergenic
ACTTCTTAGAGCTTCTGCTG+AGG	0.655336	2.2:-71519233	MS.gene002196:CDS
ACTTTATCAGATGGAAGAGA+TGG	0.538361	2.2:-71518588	MS.gene002196:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGACTTCAAATTTCCATGA+GGG	+	chr2.2:71518877-71518896	None:intergenic	30.0%
AATCTTGAGTTCCAATTGAA+TGG	+	chr2.2:71518785-71518804	None:intergenic	30.0%
AGACTTAAAACCATTCACTA+AGG	-	chr2.2:71518206-71518225	MS.gene002196:CDS	30.0%
ATTGGAGATGAAAGATAGAT+AGG	-	chr2.2:71519418-71519437	MS.gene002196:CDS	30.0%
GTTTACAAATCACCTGAATA+TGG	-	chr2.2:71518992-71519011	MS.gene002196:CDS	30.0%
TAGCAATGAGATGTATTGAA+AGG	-	chr2.2:71519245-71519264	MS.gene002196:CDS	30.0%
TAGTATAAGCTAAAAGCTCA+TGG	+	chr2.2:71518534-71518553	None:intergenic	30.0%
TCTTAACCTCTTTACAACAA+TGG	+	chr2.2:71518187-71518206	None:intergenic	30.0%
TGATAAAGTCATGCACAATT+TGG	+	chr2.2:71518738-71518757	None:intergenic	30.0%
TTACAATGCAATCAGATGTT+TGG	-	chr2.2:71519029-71519048	MS.gene002196:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	71517775	71519584	71517775	ID=MS.gene002196
chr2.2	mRNA	71517775	71519584	71517775	ID=MS.gene002196.t1;Parent=MS.gene002196
chr2.2	exon	71518987	71519584	71518987	ID=MS.gene002196.t1.exon1;Parent=MS.gene002196.t1
chr2.2	CDS	71518987	71519584	71518987	ID=cds.MS.gene002196.t1;Parent=MS.gene002196.t1
chr2.2	exon	71518032	71518600	71518032	ID=MS.gene002196.t1.exon2;Parent=MS.gene002196.t1
chr2.2	CDS	71518032	71518600	71518032	ID=cds.MS.gene002196.t1;Parent=MS.gene002196.t1
chr2.2	exon	71517775	71517846	71517775	ID=MS.gene002196.t1.exon3;Parent=MS.gene002196.t1
chr2.2	CDS	71517775	71517846	71517775	ID=cds.MS.gene002196.t1;Parent=MS.gene002196.t1

Gene Sequence

>MS.gene002196

ATGGCTCAAGAAGGACCTAAAGGGGATAGTGAAGTCCAAAATAAATCTTCGGACGATAAAAACAACAACAATTCCAATCTTTTATTATTAATACTCAACGTGGTTCTTCTTCTTGCAATTATATTGCTATTGATTCTTTACTATAACACATCAAAAAAGCTCAACAGAATAGTCAAAGGACACATTAACACATTTCATGAACAAGAGAAAGATGTTGAAACAAGTATTGAGAAGAGGATAGAGATAGGAGAAGGGACAACGATGATGGCGGTAGAAGAGAGAAAGGAGTTAATGTTCTTTAATGATGAGACAAAATTTCAAATGGGAGAACTTCTTAGAGCTTCTGCTGAGGCATTAGGTCATGGAATTATGGGGAATAGTTATAAGGCTATGTTGAATAATGGACCTACCATTGTTGTAAAGAGGTTAAGAGACTTAAAACCATTCACTAAGGAGGAATTTGCAAAGATAGTGAAAATGATTGCTGATCTTAAACACCCTAATTTGTTGCCTTTGCTTGCTTACTATCATTCCAGAGATGAGAAGCTAATGCTCTATAGATATGCACAGAATGGAAACCTTTTCTCACGACTTCATGGTAATTTACATCAACTTGCTCCTTTTTTTCATTCTGAATCTGTACATTAGTTTCAAGAAAACATATATAAGTTGAGTTTTGCGACACTAATATTTTCCTTATTTTTTATTGAACCGACATCGATTGGGTCGCAGTATCAGTTGTAAGGACGGGCAATACCATGAGCTTTTAGCTTATACTAATTGGTGTTAAAGTGTCAAACAATTTTCAAGCAAAATGTTTTCTTTGATCAAAGTATAAAGAAAACTTGCATGTTAAAGTTTTACGTAGTCTTAACATAGGTTTTCATGCTAAATTCACAATCATATATGACAATAATGTATAGTTACAAAGGGATTTTTGTCACAATAATGAATTAGTAACCAAATTGTGCATGACTTTATCAGATGGAAGAGATGGAAACAGGGTTCCATTCAATTGGAACTCAAGATTATCAGTGGCAAGAGGCGTGGCTCGAGCCCTAGAATACCTTCACCTCAACAACAAGATCCATAACATTGTCCCTCATGGAAATTTGAAGTCTTCAAATGTACTATTTGATGAAAATGATTCAGTTTTTGTATCCGACTTTAGCCTTGCCGCGTTAATAGCACAACCAATAGCAGCTCAACATATGGTTGTTTACAAATCACCTGAATATGGTTATGCAAGAAAAGTTACAATGCAATCAGATGTTTGGAGTTATGGATCACTTTTAATAGAACTTGTAACTGGGAAAGTTTCTATGTGCTCAGCTCCACAAGGGACTAATGGTGTGGATCTTTGTAGTTGGGTTCATAGAGCTGTGAGAGAAGAATGGACTGCTGAAATATTTGACAAAGAAATATCTTGTCAAAAGAGTGCTCTTCCTGGGATGTTAAGGTTGTTGCAGATAGCAATGAGATGTATTGAAAGGTTCCCAGAGAAACGTCCTGAGATGAAAGAGGTTGTTAGAGAAGTGGAGAAAATACAACAGGTACACTTGATGTCAGAAGATGAGGATGATGTGTCTTGTGATGTGTCTCTAACTGATGATTCCTGTTCAACTAGTAACTCAGGGATGTTTATTGGAGATGAAAGATAGATAGGTTGTTAGATAGATTATCAAATTAAGGTTGGATGCCTAAACCTATAACATGTTCTTTTTGTTTTTGATATCAGGGTACAGTGCACCAAAAGAATAAAGTTACATACTTCTATGATGTTTGTTTCTGTCTCAATATGAAGACTTAA

Protein sequence

>MS.gene002196.t1

MAQEGPKGDSEVQNKSSDDKNNNNSNLLLLILNVVLLLAIILLLILYYNTSKKLNRIVKGHINTFHEQEKDVETSIEKRIEIGEGTTMMAVEERKELMFFNDETKFQMGELLRASAEALGHGIMGNSYKAMLNNGPTIVVKRLRDLKPFTKEEFAKIVKMIADLKHPNLLPLLAYYHSRDEKLMLYRYAQNGNLFSRLHDGRDGNRVPFNWNSRLSVARGVARALEYLHLNNKIHNIVPHGNLKSSNVLFDENDSVFVSDFSLAALIAQPIAAQHMVVYKSPEYGYARKVTMQSDVWSYGSLLIELVTGKVSMCSAPQGTNGVDLCSWVHRAVREEWTAEIFDKEISCQKSALPGMLRLLQIAMRCIERFPEKRPEMKEVVREVEKIQQGTVHQKNKVTYFYDVCFCLNMKT