AlfalfaGEDB | MS.gene002284

M. sativa cultivar XinJiangDaYe / MS.gene002284

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00560.36 PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002284.t1	XP_003593346.1	97.8	968	21	0	1	968	12	979	4.20E-302	1047.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002284.t1	Q9LJM4	68.2	968	277	10	15	956	6	968	7.7e-127	456.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002284.t1	G7IFB9	97.8	968	21	0	1	968	12	979	3.1e-302	1047.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene002284.t1	MTR_2g010470	97.004	968	29	0	1	968	12	979	1905
MS.gene002284.t1	MTR_3g110860	55.452	963	406	8	26	968	17	976	1055
MS.gene002284.t1	MTR_3g110860	54.191	847	365	8	26	852	17	860	895
MS.gene002284.t1	MTR_2g014560	41.909	964	519	13	28	961	18	970	686
MS.gene002284.t1	MTR_4g088320	42.225	971	519	14	15	954	10	969	677
MS.gene002284.t1	MTR_2g090710	40.977	942	511	14	49	958	42	970	645
MS.gene002284.t1	MTR_3g110840	38.974	975	530	19	9	956	3	939	629
MS.gene002284.t1	MTR_5g014720	37.674	1006	534	16	26	959	19	1003	627
MS.gene002284.t1	MTR_1g069470	37.769	977	537	21	31	956	25	981	588
MS.gene002284.t1	MTR_5g014700	37.771	969	546	15	31	962	26	974	582

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene002284.t1	AT1G09970	57.680	957	394	6	15	965	14	965	1070
MS.gene002284.t1	AT1G09970	57.620	958	394	7	15	965	14	966	1065
MS.gene002284.t1	AT3G19700	55.785	968	397	10	15	956	6	968	1035
MS.gene002284.t1	AT1G28440	40.963	935	510	13	51	953	37	961	673
MS.gene002284.t1	AT5G49660	40.021	947	515	16	28	956	27	938	669
MS.gene002284.t1	AT1G72180	40.248	969	537	19	14	958	15	965	654
MS.gene002284.t1	AT4G28490	40.900	956	494	18	51	958	42	974	636
MS.gene002284.t1	AT5G65710	39.394	957	497	14	59	955	57	990	622
MS.gene002284.t1	AT5G65700	37.113	970	553	16	31	961	24	975	577
MS.gene002284.t1	AT5G65700	37.113	970	553	16	31	961	24	975	577

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Find 168 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTGGCTGCATAAACC+AGG	0.576056	2.3:+72935043	None:intergenic
AAAATTTCCATGGAAATCAT+TGG	0.365516	2.3:-72936322	MS.gene002284:CDS
AAACAGAGTTGTGAGAAAAG+TGG	0.580258	2.3:+72936758	None:intergenic
AAAGTTCTTGTTACAATAGA+TGG	0.273532	2.3:-72933756	MS.gene002284:CDS
AACAGAGTTGTGAGAAAAGT+GGG	0.541292	2.3:+72936759	None:intergenic
AACTTGAAGTATTTGGATTT+AGG	0.291217	2.3:-72936432	MS.gene002284:CDS
AAGACAAGTTCAATGAATTA+AGG	0.183887	2.3:+72935206	None:intergenic
AAGACCATCAATGAGAACGT+TGG	0.621677	2.3:-72933817	MS.gene002284:CDS
AAGAGTGATGTGTACAGCTT+TGG	0.428255	2.3:-72934050	MS.gene002284:CDS
AAGCCAAGGATTGCTGATTT+TGG	0.210394	2.3:-72934335	MS.gene002284:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTAACATATTGCTTGATG+AGG	-	chr2.3:72936184-72936203	MS.gene002284:CDS	30.0%
AAGTTCAATGAATTAAGGGT+AGG	+	chr2.3:72935339-72935358	None:intergenic	30.0%
AGAATAAGGATATTGTGAGT+TGG	-	chr2.3:72936576-72936595	MS.gene002284:CDS	30.0%
AGCATCAAATTGAACAAGAT+TGG	+	chr2.3:72934551-72934570	None:intergenic	30.0%
ATAAAATCTCCAAACTCTTG+GGG	+	chr2.3:72934670-72934689	None:intergenic	30.0%
CAAATTGAACAAGATTGGTA+AGG	+	chr2.3:72934546-72934565	None:intergenic	30.0%
CAGCAATGAAAAAGAATACA+AGG	+	chr2.3:72935584-72935603	None:intergenic	30.0%
CATAAAATCTCCAAACTCTT+GGG	+	chr2.3:72934671-72934690	None:intergenic	30.0%
CTAAATTTAAGTGGAGTTTC+TGG	-	chr2.3:72934202-72934221	MS.gene002284:intron	30.0%
CTTCTGTAATGATCATTTCT+TGG	+	chr2.3:72935864-72935883	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	72933752	72936817	72933752	ID=MS.gene002284
chr2.3	mRNA	72933752	72936817	72933752	ID=MS.gene002284.t1;Parent=MS.gene002284
chr2.3	exon	72934261	72936817	72934261	ID=MS.gene002284.t1.exon1;Parent=MS.gene002284.t1
chr2.3	CDS	72934261	72936817	72934261	ID=cds.MS.gene002284.t1;Parent=MS.gene002284.t1
chr2.3	exon	72933752	72934101	72933752	ID=MS.gene002284.t1.exon2;Parent=MS.gene002284.t1
chr2.3	CDS	72933752	72934101	72933752	ID=cds.MS.gene002284.t1;Parent=MS.gene002284.t1

Gene Sequence

>MS.gene002284

ATGTTCACCGGAGCTCTTTTCTGTCACCCTTCACCGCCCACTTTTCTCACAACTCTGTTTTTCCTCTGTTTCATTACACACTCACATTCAAATGAGCTTCAATATCTTATGAACTTCAAATCCTCAATACAAACTTCTCTTCCAAACATTTTCACTTCATGGAACACATCAAATTCACCATGCAATTTTGCCGGAATTCTATGTAATTCCAATGGTTTTGTTACACAAATCAACCTTGCAAAGAAAAATCTTGTAGGAACTCTTCCTTTTGATTCCATTTGCAAGCTGAAATCACTTGAGAAAATCTCTTTAGAGTCCAACTTTTTGCATGGAAGTATCAATGAAGAGTTGAAGAATTGTACAAACTTGAAGTATTTGGATTTAGGTGGAAATTCATTCAATGGAACAGTACCTGAATTTTCATCTTTGAGTAAGTTGGAATATTTGAATCTAAATTTAAGTGGAGTTTCTGGAAAATTTCCATGGAAATCATTGGAAAATCTTACAAGTCTAACATTTTTAAGCCTTGGTGATAATATATTTGAAAAAAGCTCTTTCCCTTTGGAGATTCTTAAGCTTGAAAAATTGTATTGGCTTTACCTAACCAATTGCAGCATCTTTGGTGAAATTCCAGTTGGTATTGGAAATCTCACTCAGCTTCAGCATCTTGAGCTTTCTGACAACAATTTATCAGGTGAAATTCCACATGATATTGGAAAGCTTAAGAATCTAAGGCAACTTGAGATATACGATAACTATTTGAGTGGAAAATTTCCATTTGGATTTGGTAACCTTACCAATCTTGTTCAATTTGATGCTTCTAATAATCATCTTGAAGGTGATCTTTCTGAGCTAAAGTCTTTGAAAAATCTTCAATCTCTTCAGCTTTTTCAGAACAAATTCTCAGGAGAAATTCCCCAAGAGTTTGGAGATTTTATGAATCTTACAGAACTTTCTCTTTATGATAACAAGTTCACTGGTTTTCTTCCACAAAAGCTTGGTTCTTGGGTAGGAATGCTATTCATAGATGTTTCAGATAATTCACTTTCTGGTCCTATACCACCTGACATGTGCAAGAACAATCAAATTACTGATATTGCCTTGTTGAATAACAGTTTCACAGGAAGCATACCAGAAAGCTATGCAAATTGCACAGCTTTGGTACGTTTCAGATTAACTAAGAATTCACTTTCTGGTATTGTTCCTAGAGGTATATGGGGGCTACCAAATTTGGAACTTTTTGATCTTGGAAGGAACAAATTTGAAGGTACAATTTCATCTGATATTGGAAAAGCTAAATCTCTAGCTCAGCTGTTTTTATCCGATAATCAATTCTCAGGTGAGTTACCAATGGAAATCTCAGAAGCTAGTTCTTTGGTTTCAATTCAGTTAAGTTTGAATAGATTTTCCGGTCACATACCGGAAACTATAGGCAAATTGAAGAAACTAACTAGTCTTACTTTGAATAACAACAATGTTTCTGGTATTCTACCTGATTCTATTGGATCTTGTGTTTCTCTTACTGAAATAAACCTTGCTGAAAATTCTATTTCTGGTGTAATTCCAACTAGTATTGGTTCTTTGCCTACCCTTAATTCATTGAACTTGTCTTCAAACAAGTTTTCTGGTGAGATTCCATCAAGTTTGTCATCTCTAAAACTCAGCCTTCTTGATTTATCAAACAACCAGTTTTTTGGTTCCATACCAGACTCACTTGCTATTTCAGCTTTTAAAGATGGTTTCATGGGAAATCCTGGTTTATGCAGCCAGATTTTGAAGAATTTCCAACCATGTTCATTGGAATCTGGTAGCTCGAGGCGAGTTCGAAACCTTGTATTCTTTTTCATTGCTGGTTTAATGGTTCTGCTTGTTTCATTAACATTTCTCATCATCATGAGACTAAAGCAGAATAACAAGTTTGAGAAGCAAGTTCTTAAGACTAATTCTTGGAATTTCAAGCAATACCATGTGCTAAACATCAATGAGAATGAAATTATTGATGGAATCAAAGCTGAGAATGTGATCGGAAAAGGAGGTTCAGGGAATGTTTACAAAGTTGAGCTTAAAAGTGGTGAAGTATTCGCAGTCAAACACATATGGACTTCAAATCCAAGAAATGATCATTACAGAAGCAGTTCAGCAATGCTAAAAAGGAGTTCAAATTCACCCGAGTTTGATGCCGAGGTGGCAGCTCTTAGCTCTATAAGGCATGTGAATGTGGTGAAGCTGTATTGTAGTATCACAAGTGAAGATAGTAGTTTGCTTGTGTATGAGTTTTTACCAAATGGTAGTTTGTGGGATAGGTTGCATACATGTAACAAGACTCAGATGGTGTGGGATGTTAGGTATGATATTGCACTGGGTTCAGCTAGAGGATTGGAGTACTTGCATCATGGTTGTGATAGACCTGTTATGCATAGAGATGTTAAATCAAGTAACATATTGCTTGATGAGGAATGGAAGCCAAGGATTGCTGATTTTGGACTTGCTAAGATTGTGCAAGGAGGTGGAAATTGGACTCATGTCATTGCTGGCACACTTGGCTACATGGCTCCTGGTAAGCATTAGTTCAGATAAACACCTTAATTAAATGTTTATAACATAAAAACTTATCATATAAGTGCTTATGTATAAGTTGTTTCTATAACAAAGATAATGTTAATATTTTTGGCTATTATACATGAAAGTTAACCATGTTAATATTTTATTACGACAGAGTATGCCTACACTTGTAAGGTGACAGAAAAGAGTGATGTGTACAGCTTTGGAGTAGTACTGATGGAGTTGGTAACTGGGAAGAGACCTGTGGAGCCAGAGTTTGGAGAGAATAAGGATATTGTGAGTTGGGTATATAGCAATATTAGGAGCAAAGAAAGTGCACTTGAATTGGTAGATTCTACCATTGCAAAGCATTTCAAAGAAGATGCTATTAAGGTGTTGAGAATTGCGACTTTGTGCACGGCAAAAGCTCCATCTTCAAGACCATCAATGAGAACGTTGGTTCAAATGCTGGAAGAGGCAGAGCCATGTGCTCCATCAAAAGTTCTTGTTACAATAGATGGTTAA

Protein sequence

>MS.gene002284.t1

MFTGALFCHPSPPTFLTTLFFLCFITHSHSNELQYLMNFKSSIQTSLPNIFTSWNTSNSPCNFAGILCNSNGFVTQINLAKKNLVGTLPFDSICKLKSLEKISLESNFLHGSINEELKNCTNLKYLDLGGNSFNGTVPEFSSLSKLEYLNLNLSGVSGKFPWKSLENLTSLTFLSLGDNIFEKSSFPLEILKLEKLYWLYLTNCSIFGEIPVGIGNLTQLQHLELSDNNLSGEIPHDIGKLKNLRQLEIYDNYLSGKFPFGFGNLTNLVQFDASNNHLEGDLSELKSLKNLQSLQLFQNKFSGEIPQEFGDFMNLTELSLYDNKFTGFLPQKLGSWVGMLFIDVSDNSLSGPIPPDMCKNNQITDIALLNNSFTGSIPESYANCTALVRFRLTKNSLSGIVPRGIWGLPNLELFDLGRNKFEGTISSDIGKAKSLAQLFLSDNQFSGELPMEISEASSLVSIQLSLNRFSGHIPETIGKLKKLTSLTLNNNNVSGILPDSIGSCVSLTEINLAENSISGVIPTSIGSLPTLNSLNLSSNKFSGEIPSSLSSLKLSLLDLSNNQFFGSIPDSLAISAFKDGFMGNPGLCSQILKNFQPCSLESGSSRRVRNLVFFFIAGLMVLLVSLTFLIIMRLKQNNKFEKQVLKTNSWNFKQYHVLNINENEIIDGIKAENVIGKGGSGNVYKVELKSGEVFAVKHIWTSNPRNDHYRSSSAMLKRSSNSPEFDAEVAALSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWDRLHTCNKTQMVWDVRYDIALGSARGLEYLHHGCDRPVMHRDVKSSNILLDEEWKPRIADFGLAKIVQGGGNWTHVIAGTLGYMAPEYAYTCKVTEKSDVYSFGVVLMELVTGKRPVEPEFGENKDIVSWVYSNIRSKESALELVDSTIAKHFKEDAIKVLRIATLCTAKAPSSRPSMRTLVQMLEEAEPCAPSKVLVTIDG