AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002308

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002308.t1 MTR_2g010790 90.307 423 34 4 1 420 1 419 0.0 665
MS.gene002308.t1 MTR_4g109950 55.063 158 64 4 234 389 150 302 2.93e-40 145
MS.gene002308.t1 MTR_3g070120 34.114 299 158 9 126 406 85 362 3.02e-33 129
MS.gene002308.t1 MTR_7g114600 30.921 152 83 4 152 292 68 208 1.39e-12 69.3
MS.gene002308.t1 MTR_4g109910 36.601 153 39 4 234 385 48 143 5.10e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002308.t1 AT1G61730 32.958 355 171 15 87 418 62 372 2.80e-27 112
MS.gene002308.t1 AT4G00390 30.576 399 222 13 16 408 6 355 4.40e-24 103
MS.gene002308.t1 AT1G11510 31.452 372 185 16 59 406 14 339 2.28e-20 92.0
MS.gene002308.t1 AT1G11510 29.834 362 175 13 59 406 14 310 1.05e-18 87.0
MS.gene002308.t1 AT4G25210 26.269 335 181 10 112 413 63 364 9.34e-16 79.0
MS.gene002308.t1 AT1G66420 36.090 133 69 4 160 288 53 173 2.39e-14 73.6
MS.gene002308.t1 AT2G01370 37.500 112 54 3 184 287 66 169 2.71e-13 70.1
MS.gene002308.t1 AT1G44810 32.353 136 69 3 157 288 93 209 5.97e-13 69.7
MS.gene002308.t1 AT4G01260 29.078 282 147 9 157 410 57 313 1.07e-11 66.2
MS.gene002308.t1 AT2G25650 35.714 140 72 6 207 335 67 199 1.65e-11 65.9
MS.gene002308.t1 AT5G14280 28.936 235 134 8 207 411 63 294 8.62e-11 63.2

Find 114 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGGCTTGGACTTGGGTT+TGG 0.177355 2.3:+72658251 None:intergenic
GAAGCAAGTGGTTTAACTTT+AGG 0.199493 2.3:+72658289 None:intergenic
GATTCAGATTCAGCGGGTTT+AGG 0.217235 2.3:+72658394 None:intergenic
TTGGGCTTGGACTTGGGTTT+GGG 0.220270 2.3:+72658252 None:intergenic
AAGCAAGTGGTTTAACTTTA+GGG 0.240022 2.3:+72658290 None:intergenic
CGTTTCTGTGGCTTTGGCTT+TGG 0.250692 2.3:+72658664 None:intergenic
CAAGAAGAAATCAAGCAAAT+AGG 0.257807 2.3:-72657426 None:intergenic
ATTGGACTTGGGCTTGGACT+TGG 0.264122 2.3:+72658245 None:intergenic
ATTCAGATTCAGCGGGTTTA+GGG 0.293343 2.3:+72658395 None:intergenic
TGAATCGCGCTGAGGTGGTT+AGG 0.312947 2.3:-72657478 MS.gene002308:CDS
TTCTTCGTTGACTACTTTGT+CGG 0.338007 2.3:+72658567 None:intergenic
GTGGGTTCCGATTTCTGTTC+CGG 0.345211 2.3:+72658325 None:intergenic
GCGAGGCGTTTCTGTGGCTT+TGG 0.349353 2.3:+72658658 None:intergenic
GGCACGCTTAGTTCCGGACT+TGG 0.351838 2.3:+72658207 None:intergenic
TTCTGAACCGGAACAGAAAT+CGG 0.355824 2.3:-72658332 MS.gene002308:CDS
GCACCGGAGTTGATTGGACT+TGG 0.364516 2.3:+72658233 None:intergenic
GTCAGATAGGGTTGAGTTGG+AGG 0.367989 2.3:-72657543 MS.gene002308:CDS
TGCTCTCTTATCATGAGCTT+TGG 0.370081 2.3:+72657850 None:intergenic
GCAGACTAGATTGGCATTGC+AGG 0.370825 2.3:-72657453 MS.gene002308:CDS
TCAGAATCCGGTTCTGAATC+TGG 0.376206 2.3:-72658367 MS.gene002308:CDS
TTGGACTTGGGCTTGGACTT+GGG 0.378567 2.3:+72658246 None:intergenic
AAGAAGAAATCAAGCAAATA+GGG 0.379593 2.3:-72657425 None:intergenic
AGTGGTTTAACTTTAGGGTT+AGG 0.384389 2.3:+72658295 None:intergenic
TTCGGCGGCACGCTTAGTTC+CGG 0.394238 2.3:+72658201 None:intergenic
CTTGTGATTCTCAAAGGACT+TGG 0.403858 2.3:-72658028 MS.gene002308:CDS
GCGGGTTTAGGGGTAGAGAT+AGG 0.413172 2.3:+72658406 None:intergenic
TCTCTTCAATTGCTGAGCAT+TGG 0.418880 2.3:+72657919 None:intergenic
GAATCGCGCTGAGGTGGTTA+GGG 0.419146 2.3:-72657477 MS.gene002308:CDS
TTTCTGTTCCGGTTCAGAAT+CGG 0.426517 2.3:+72658336 None:intergenic
CTCGTCGGAGGAAGAGGCGG+TGG 0.434145 2.3:+72658618 None:intergenic
GGGGTAGAGATAGGAGTAGA+AGG 0.435130 2.3:+72658415 None:intergenic
TCTGAATCCGGCTCAGAATC+CGG 0.447335 2.3:-72658379 MS.gene002308:CDS
TTCCGGTTCAGAATCGGATT+CGG 0.447376 2.3:+72658342 None:intergenic
ATCGTTTCCAGTGTTACTTT+CGG 0.449680 2.3:+72658183 None:intergenic
CGCTTAGTTCCGGACTTGGT+TGG 0.450754 2.3:+72658211 None:intergenic
TCGGAGGAAGAGGCGGTGGG+TGG 0.451878 2.3:+72658622 None:intergenic
TAAGAATGAAAGTGGAAAAG+TGG 0.453012 2.3:-72657681 MS.gene002308:CDS
TCCATCTCCTTCTTCTTCTG+AGG 0.458431 2.3:+72658531 None:intergenic
GGAGAGGTGGAAGAAGTTGC+AGG 0.459564 2.3:-72657522 MS.gene002308:CDS
TGGTTGGCACCGGAGTTGAT+TGG 0.463699 2.3:+72658227 None:intergenic
AAGGAAGCAGCTGCATTTCA+CGG 0.465241 2.3:-72657971 MS.gene002308:CDS
AATCACAAAGAGTGCTAAGA+AGG 0.466107 2.3:-72657756 MS.gene002308:CDS
GAGTTGATTGGACTTGGGCT+TGG 0.466395 2.3:+72658239 None:intergenic
TTGATCCTCGTCGGAGGAAG+AGG 0.466920 2.3:+72658612 None:intergenic
TTCGGTTCCAGATTCAGAAC+CGG 0.467458 2.3:+72658360 None:intergenic
ACTCCGGTGCCAACCAAGTC+CGG 0.469333 2.3:-72658220 MS.gene002308:CDS
ATAGTTACTAAGAATGAAAG+TGG 0.473928 2.3:-72657689 MS.gene002308:CDS
GGAGTCAGATAGGGTTGAGT+TGG 0.474759 2.3:-72657546 MS.gene002308:CDS
AACCGAATCCGATTCTGAAC+CGG 0.482372 2.3:-72658344 MS.gene002308:CDS
TTGTGATTCTCAAAGGACTT+GGG 0.485931 2.3:-72658027 MS.gene002308:CDS
GTTCCGGACTTGGTTGGCAC+CGG 0.486396 2.3:+72658217 None:intergenic
GGGTATAGCTGTGCTGGATA+AGG 0.490129 2.3:-72657600 MS.gene002308:CDS
GGGTTGAGTTGGAGGAGAGG+TGG 0.490174 2.3:-72657535 MS.gene002308:CDS
GAGATAGGAGTAGAAGGAGG+AGG 0.494629 2.3:+72658421 None:intergenic
GGTTTAACTTTAGGGTTAGG+AGG 0.498539 2.3:+72658298 None:intergenic
CACCGGAGTTGATTGGACTT+GGG 0.499707 2.3:+72658234 None:intergenic
TTCAGAACCGGATTCTGAGC+CGG 0.501712 2.3:+72658372 None:intergenic
TCTAAGGAAGCTGAAGAAAA+CGG 0.508657 2.3:-72657794 MS.gene002308:CDS
AAGAAAACCACCGGTGGTGG+TGG 0.509946 2.3:-72658145 MS.gene002308:CDS
AAATGGTGGTTCTGCTAGGA+AGG 0.513798 2.3:-72657720 MS.gene002308:CDS
AAGAAGAAAACCACCGGTGG+TGG 0.515031 2.3:-72658148 MS.gene002308:CDS
GAAGTTGCAGGCTGCCGAGA+TGG 0.515486 2.3:-72657510 MS.gene002308:CDS
ATAGGGTTGAGTTGGAGGAG+AGG 0.516403 2.3:-72657538 MS.gene002308:CDS
GGTTAGGGAGCAGACTAGAT+TGG 0.517395 2.3:-72657462 MS.gene002308:CDS
AGATAGGAGTAGAAGGAGGA+GGG 0.520024 2.3:+72658422 None:intergenic
GAAGGAGATGGAGAAGAAGA+AGG 0.521213 2.3:-72658520 MS.gene002308:CDS
TGTGATTCTCAAAGGACTTG+GGG 0.521463 2.3:-72658026 MS.gene002308:CDS
AAACCCGCTGAATCTGAATC+CGG 0.523805 2.3:-72658391 MS.gene002308:CDS
CGGAGGAAGAGGCGGTGGGT+GGG 0.524036 2.3:+72658623 None:intergenic
TCGTTGACTACTTTGTCGGC+TGG 0.525334 2.3:+72658571 None:intergenic
GTTAAATTTGATGAGGCTGC+GGG 0.528643 2.3:-72657620 MS.gene002308:CDS
TGCTCAGCAATTGAAGAGAA+AGG 0.529680 2.3:-72657915 MS.gene002308:CDS
TTAACTTTAGGGTTAGGAGG+TGG 0.529972 2.3:+72658301 None:intergenic
GGCTGCGGGTATAGCTGTGC+TGG 0.534970 2.3:-72657606 MS.gene002308:CDS
GGTTAAATTTGATGAGGCTG+CGG 0.538193 2.3:-72657621 MS.gene002308:CDS
ATCATCAGAACCACCACCAC+CGG 0.552134 2.3:+72658135 None:intergenic
CAATTGAAGAGAAAGGTTCG+TGG 0.552666 2.3:-72657908 MS.gene002308:CDS
TTAGGGTTAGGAGGTGGAGT+GGG 0.559530 2.3:+72658307 None:intergenic
TGATGAGAATGAGGCGGAGG+AGG 0.559810 2.3:-72658116 MS.gene002308:CDS
GATTCATCCTCAGAAGAAGA+AGG 0.562296 2.3:-72658538 MS.gene002308:CDS
AATGCAGCTGCTTCCTTCAG+CGG 0.564243 2.3:+72657977 None:intergenic
GAGCCGGATTCAGATTCAGC+GGG 0.569467 2.3:+72658388 None:intergenic
TTTAGGGTTAGGAGGTGGAG+TGG 0.572126 2.3:+72658306 None:intergenic
GATGAGCTTGTGATTCTCAA+AGG 0.573567 2.3:-72658034 MS.gene002308:CDS
AAAAGCGGTTTGGAATTGAT+GGG 0.574547 2.3:-72657569 MS.gene002308:CDS
TGATGATGAGAATGAGGCGG+AGG 0.577141 2.3:-72658119 MS.gene002308:CDS
TCCTCAGAAGAAGAAGGAGA+TGG 0.578512 2.3:-72658532 MS.gene002308:CDS
TTCATGGGCTTTGAAGCAAG+TGG 0.579960 2.3:+72658277 None:intergenic
GAGGAGGATGTGAAATTGAC+TGG 0.583042 2.3:-72658100 MS.gene002308:CDS
TCGTCGGAGGAAGAGGCGGT+GGG 0.588753 2.3:+72658619 None:intergenic
TGAAGGTGGTTGATCCTCGT+CGG 0.589745 2.3:+72658603 None:intergenic
GAAAGTGGAAAAGTGGAAAG+TGG 0.593025 2.3:-72657674 MS.gene002308:CDS
ATCCTCGTCGGAGGAAGAGG+CGG 0.601599 2.3:+72658615 None:intergenic
CGTGCCGCCGAAAGTAACAC+TGG 0.604597 2.3:-72658190 MS.gene002308:CDS
CACCGCCTCTTCCTCCGACG+AGG 0.604984 2.3:-72658617 MS.gene002308:CDS
GACTGGAAAGGATCCGCTGA+AGG 0.611489 2.3:-72657990 MS.gene002308:CDS
AGCCCAAGTCCAATCAACTC+CGG 0.618850 2.3:-72658236 MS.gene002308:CDS
GGAAAAGTGGAAAGTGGTGT+TGG 0.619417 2.3:-72657668 MS.gene002308:CDS
AAAGCGGTTTGGAATTGATG+GGG 0.621162 2.3:-72657568 MS.gene002308:CDS
ACGAGAGCGAGGCGTTTCTG+TGG 0.625521 2.3:+72658652 None:intergenic
GTGGGTCGTCGACGAGAGCG+AGG 0.630460 2.3:+72658641 None:intergenic
TGGTTCTGATGATGAGAATG+AGG 0.631876 2.3:-72658125 MS.gene002308:CDS
CGTTCCAAGAAGAAAACCAC+CGG 0.642479 2.3:-72658154 MS.gene002308:CDS
GTTTCCAGTGTTACTTTCGG+CGG 0.643844 2.3:+72658186 None:intergenic
TGAGCCGGATTCAGATTCAG+CGG 0.650032 2.3:+72658387 None:intergenic
TTCAGATTCAGCGGGTTTAG+GGG 0.652803 2.3:+72658396 None:intergenic
GTAGAGATAGGAGTAGAAGG+AGG 0.653610 2.3:+72658418 None:intergenic
CGAACTGGTTAAATTTGATG+AGG 0.653994 2.3:-72657627 MS.gene002308:CDS
ATCAGAACCACCACCACCGG+TGG 0.666036 2.3:+72658138 None:intergenic
AGGTGGTTGATCCTCGTCGG+AGG 0.667833 2.3:+72658606 None:intergenic
AAGCGGTTTGGAATTGATGG+GGG 0.669970 2.3:-72657567 MS.gene002308:CDS
GAAGAAATCGATGAAAGCTG+AGG 0.677405 2.3:-72657942 MS.gene002308:CDS
TCCAAGAAGAAAACCACCGG+TGG 0.717568 2.3:-72658151 MS.gene002308:CDS
TTCTGATGATGAGAATGAGG+CGG 0.722855 2.3:-72658122 MS.gene002308:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATAGTTACTAAGAATGAAAG+TGG - chr2.3:72658408-72658427 MS.gene002308:CDS 25.0%
ATTCAAAAACACTTCCATCT+CGG + chr2.3:72658604-72658623 None:intergenic 30.0%
TAAGAATGAAAGTGGAAAAG+TGG - chr2.3:72658416-72658435 MS.gene002308:CDS 30.0%
! AAGCAAGTGGTTTAACTTTA+GGG + chr2.3:72657810-72657829 None:intergenic 30.0%
!! CATTTGATCTTTTCAAGGTT+TGG - chr2.3:72658268-72658287 MS.gene002308:CDS 30.0%
AAGGAAGCTCCTGTTAAAAA+TGG - chr2.3:72658360-72658379 MS.gene002308:CDS 35.0%
CGAACTGGTTAAATTTGATG+AGG - chr2.3:72658470-72658489 MS.gene002308:CDS 35.0%
TCTAAGGAAGCTGAAGAAAA+CGG - chr2.3:72658303-72658322 MS.gene002308:CDS 35.0%
TTGGAGCAAAAATGCTTCTA+AGG - chr2.3:72658287-72658306 MS.gene002308:CDS 35.0%
TTGTGATTCTCAAAGGACTT+GGG - chr2.3:72658070-72658089 MS.gene002308:CDS 35.0%
! AAAAAGCGGTTTGGAATTGA+TGG - chr2.3:72658527-72658546 MS.gene002308:CDS 35.0%
! AAAAGCGGTTTGGAATTGAT+GGG - chr2.3:72658528-72658547 MS.gene002308:CDS 35.0%
! GAAGCAAGTGGTTTAACTTT+AGG + chr2.3:72657811-72657830 None:intergenic 35.0%
! TTAAAAATGGTGGTTCTGCT+AGG - chr2.3:72658373-72658392 MS.gene002308:CDS 35.0%
! TTCTTCGTTGACTACTTTGT+CGG + chr2.3:72657533-72657552 None:intergenic 35.0%
!! AATCACAAAGAGTGCTAAGA+AGG - chr2.3:72658341-72658360 MS.gene002308:CDS 35.0%
!! AGTGGTTTAACTTTAGGGTT+AGG + chr2.3:72657805-72657824 None:intergenic 35.0%
!! ATCGTTTCCAGTGTTACTTT+CGG + chr2.3:72657917-72657936 None:intergenic 35.0%
!!! GAGAGCATTTGATCTTTTCA+AGG - chr2.3:72658263-72658282 MS.gene002308:CDS 35.0%
CAATTGAAGAGAAAGGTTCG+TGG - chr2.3:72658189-72658208 MS.gene002308:CDS 40.0%
CTTGTGATTCTCAAAGGACT+TGG - chr2.3:72658069-72658088 MS.gene002308:CDS 40.0%
GAAAGTGGAAAAGTGGAAAG+TGG - chr2.3:72658423-72658442 MS.gene002308:CDS 40.0%
GAAGAAATCGATGAAAGCTG+AGG - chr2.3:72658155-72658174 MS.gene002308:CDS 40.0%
GAAGCTCCTGTTAAAAATGG+TGG - chr2.3:72658363-72658382 MS.gene002308:CDS 40.0%
GATAAGGATGCTGCAAAAAG+CGG - chr2.3:72658513-72658532 MS.gene002308:CDS 40.0%
GATGAGCTTGTGATTCTCAA+AGG - chr2.3:72658063-72658082 MS.gene002308:CDS 40.0%
GATTCATCCTCAGAAGAAGA+AGG - chr2.3:72657559-72657578 MS.gene002308:CDS 40.0%
GGTTAAATTTGATGAGGCTG+CGG - chr2.3:72658476-72658495 MS.gene002308:CDS 40.0%
GTTAAATTTGATGAGGCTGC+GGG - chr2.3:72658477-72658496 MS.gene002308:CDS 40.0%
TCTCTTCAATTGCTGAGCAT+TGG + chr2.3:72658181-72658200 None:intergenic 40.0%
TGCTCAGCAATTGAAGAGAA+AGG - chr2.3:72658182-72658201 MS.gene002308:CDS 40.0%
TGCTCTCTTATCATGAGCTT+TGG + chr2.3:72658250-72658269 None:intergenic 40.0%
TGTGATTCTCAAAGGACTTG+GGG - chr2.3:72658071-72658090 MS.gene002308:CDS 40.0%
TTCTGAACCGGAACAGAAAT+CGG - chr2.3:72657765-72657784 MS.gene002308:CDS 40.0%
TTTCTGTTCCGGTTCAGAAT+CGG + chr2.3:72657764-72657783 None:intergenic 40.0%
! AAAGCGGTTTGGAATTGATG+GGG - chr2.3:72658529-72658548 MS.gene002308:CDS 40.0%
! ATTCAGATTCAGCGGGTTTA+GGG + chr2.3:72657705-72657724 None:intergenic 40.0%
! GAGTTTCATTTTGAGCGAAC+TGG - chr2.3:72658455-72658474 MS.gene002308:CDS 40.0%
! TTCTGATGATGAGAATGAGG+CGG - chr2.3:72657975-72657994 MS.gene002308:CDS 40.0%
!! ACTTGGGTTTGGGTTTTCAT+GGG + chr2.3:72657838-72657857 None:intergenic 40.0%
!! GCAGAACCACCATTTTTAAC+AGG + chr2.3:72658372-72658391 None:intergenic 40.0%
!! GGTTTAACTTTAGGGTTAGG+AGG + chr2.3:72657802-72657821 None:intergenic 40.0%
!! TGGTTCTGATGATGAGAATG+AGG - chr2.3:72657972-72657991 MS.gene002308:CDS 40.0%
!! TTAACTTTAGGGTTAGGAGG+TGG + chr2.3:72657799-72657818 None:intergenic 40.0%
!!! GCGGGTTTTGAATCTTTTGA+AGG + chr2.3:72657646-72657665 None:intergenic 40.0%
!!! TACTTTGTCGGCTGGTTTTT+GGG + chr2.3:72657521-72657540 None:intergenic 40.0%
AAACCCGCTGAATCTGAATC+CGG - chr2.3:72657706-72657725 MS.gene002308:CDS 45.0%
AACCGAATCCGATTCTGAAC+CGG - chr2.3:72657753-72657772 MS.gene002308:CDS 45.0%
AAGGAAGCAGCTGCATTTCA+CGG - chr2.3:72658126-72658145 MS.gene002308:CDS 45.0%
AATTGATGGGGGAGTCAGAT+AGG - chr2.3:72658541-72658560 MS.gene002308:CDS 45.0%
AGATAGGAGTAGAAGGAGGA+GGG + chr2.3:72657678-72657697 None:intergenic 45.0%
ATTGATGGGGGAGTCAGATA+GGG - chr2.3:72658542-72658561 MS.gene002308:CDS 45.0%
CGTTCCAAGAAGAAAACCAC+CGG - chr2.3:72657943-72657962 MS.gene002308:CDS 45.0%
GAAGGAGATGGAGAAGAAGA+AGG - chr2.3:72657577-72657596 MS.gene002308:CDS 45.0%
GAGGAGGATGTGAAATTGAC+TGG - chr2.3:72657997-72658016 MS.gene002308:CDS 45.0%
GGAAAAGTGGAAAGTGGTGT+TGG - chr2.3:72658429-72658448 MS.gene002308:CDS 45.0%
GTAGAGATAGGAGTAGAAGG+AGG + chr2.3:72657682-72657701 None:intergenic 45.0%
TCCATCTCCTTCTTCTTCTG+AGG + chr2.3:72657569-72657588 None:intergenic 45.0%
TCCTCAGAAGAAGAAGGAGA+TGG - chr2.3:72657565-72657584 MS.gene002308:CDS 45.0%
TTCCGGTTCAGAATCGGATT+CGG + chr2.3:72657758-72657777 None:intergenic 45.0%
TTCGGTTCCAGATTCAGAAC+CGG + chr2.3:72657740-72657759 None:intergenic 45.0%
! AAATGGTGGTTCTGCTAGGA+AGG - chr2.3:72658377-72658396 MS.gene002308:CDS 45.0%
! AAGCGGTTTGGAATTGATGG+GGG - chr2.3:72658530-72658549 MS.gene002308:CDS 45.0%
! AGTAGAAGGAGGAGGGTTTT+TGG + chr2.3:72657671-72657690 None:intergenic 45.0%
! CAAAGGACTTGGGGATTTTG+TGG - chr2.3:72658080-72658099 MS.gene002308:CDS 45.0%
! GATTCAGATTCAGCGGGTTT+AGG + chr2.3:72657706-72657725 None:intergenic 45.0%
! TTCAGATTCAGCGGGTTTAG+GGG + chr2.3:72657704-72657723 None:intergenic 45.0%
! TTTTGTGGCGAAGACTGGAA+AGG - chr2.3:72658095-72658114 MS.gene002308:CDS 45.0%
!! AGTGTTTTTGAATCGCGCTG+AGG - chr2.3:72658611-72658630 MS.gene002308:CDS 45.0%
!! GACTTGGGTTTGGGTTTTCA+TGG + chr2.3:72657839-72657858 None:intergenic 45.0%
!! GTTTCCAGTGTTACTTTCGG+CGG + chr2.3:72657914-72657933 None:intergenic 45.0%
!! TCAGAATCCGGTTCTGAATC+TGG - chr2.3:72657730-72657749 MS.gene002308:CDS 45.0%
!! TTCATGGGCTTTGAAGCAAG+TGG + chr2.3:72657823-72657842 None:intergenic 45.0%
!!! CTACTTTGTCGGCTGGTTTT+TGG + chr2.3:72657522-72657541 None:intergenic 45.0%
AAGAAGAAAACCACCGGTGG+TGG - chr2.3:72657949-72657968 MS.gene002308:CDS 50.0%
AATGCAGCTGCTTCCTTCAG+CGG + chr2.3:72658123-72658142 None:intergenic 50.0%
AGCCCAAGTCCAATCAACTC+CGG - chr2.3:72657861-72657880 MS.gene002308:CDS 50.0%
ATCATCAGAACCACCACCAC+CGG + chr2.3:72657965-72657984 None:intergenic 50.0%
ATTGGACTTGGGCTTGGACT+TGG + chr2.3:72657855-72657874 None:intergenic 50.0%
GAGATAGGAGTAGAAGGAGG+AGG + chr2.3:72657679-72657698 None:intergenic 50.0%
GCAGACTAGATTGGCATTGC+AGG - chr2.3:72658644-72658663 MS.gene002308:CDS 50.0%
GGAGTCAGATAGGGTTGAGT+TGG - chr2.3:72658551-72658570 MS.gene002308:CDS 50.0%
GGATGCTGCAAAAAGCGGTT+TGG - chr2.3:72658518-72658537 MS.gene002308:CDS 50.0%
GGGGTAGAGATAGGAGTAGA+AGG + chr2.3:72657685-72657704 None:intergenic 50.0%
GGGTATAGCTGTGCTGGATA+AGG - chr2.3:72658497-72658516 MS.gene002308:CDS 50.0%
GGTTAGGGAGCAGACTAGAT+TGG - chr2.3:72658635-72658654 MS.gene002308:CDS 50.0%
GTGGGTTCCGATTTCTGTTC+CGG + chr2.3:72657775-72657794 None:intergenic 50.0%
TCCAAGAAGAAAACCACCGG+TGG - chr2.3:72657946-72657965 MS.gene002308:CDS 50.0%
TCTGAATCCGGCTCAGAATC+CGG - chr2.3:72657718-72657737 MS.gene002308:CDS 50.0%
TGAAGGTGGTTGATCCTCGT+CGG + chr2.3:72657497-72657516 None:intergenic 50.0%
TGAGCCGGATTCAGATTCAG+CGG + chr2.3:72657713-72657732 None:intergenic 50.0%
TTAGGGTTAGGAGGTGGAGT+GGG + chr2.3:72657793-72657812 None:intergenic 50.0%
TTCAGAACCGGATTCTGAGC+CGG + chr2.3:72657728-72657747 None:intergenic 50.0%
TTGGACTTGGGCTTGGACTT+GGG + chr2.3:72657854-72657873 None:intergenic 50.0%
TTGGGCTTGGACTTGGGTTT+GGG + chr2.3:72657848-72657867 None:intergenic 50.0%
! ACCACCGGTGGTTTTCTTCT+TGG + chr2.3:72657950-72657969 None:intergenic 50.0%
! CACCGGAGTTGATTGGACTT+GGG + chr2.3:72657866-72657885 None:intergenic 50.0%
! GAGTTGATTGGACTTGGGCT+TGG + chr2.3:72657861-72657880 None:intergenic 50.0%
! GTTTTTGAATCGCGCTGAGG+TGG - chr2.3:72658614-72658633 MS.gene002308:CDS 50.0%
! TCGTTGACTACTTTGTCGGC+TGG + chr2.3:72657529-72657548 None:intergenic 50.0%
! TGATGATGAGAATGAGGCGG+AGG - chr2.3:72657978-72657997 MS.gene002308:CDS 50.0%
! TTTAGGGTTAGGAGGTGGAG+TGG + chr2.3:72657794-72657813 None:intergenic 50.0%
!! AGGAGGAGGGTTTTTGGAAG+CGG + chr2.3:72657665-72657684 None:intergenic 50.0%
!! ATAGGGTTGAGTTGGAGGAG+AGG - chr2.3:72658559-72658578 MS.gene002308:CDS 50.0%
!! CGTTTCTGTGGCTTTGGCTT+TGG + chr2.3:72657436-72657455 None:intergenic 50.0%
!! GTCAGATAGGGTTGAGTTGG+AGG - chr2.3:72658554-72658573 MS.gene002308:CDS 50.0%
!!! GCTGGTTTTTGGGTTGAAGG+TGG + chr2.3:72657511-72657530 None:intergenic 50.0%
!!! TCGGCTGGTTTTTGGGTTGA+AGG + chr2.3:72657514-72657533 None:intergenic 50.0%
CTTGGGCTTGGACTTGGGTT+TGG + chr2.3:72657849-72657868 None:intergenic 55.0%
GAATCGCGCTGAGGTGGTTA+GGG - chr2.3:72658620-72658639 MS.gene002308:CDS 55.0%
GACTGGAAAGGATCCGCTGA+AGG - chr2.3:72658107-72658126 MS.gene002308:CDS 55.0%
GAGCCGGATTCAGATTCAGC+GGG + chr2.3:72657712-72657731 None:intergenic 55.0%
GCGGGTTTAGGGGTAGAGAT+AGG + chr2.3:72657694-72657713 None:intergenic 55.0%
GGAGAGGTGGAAGAAGTTGC+AGG - chr2.3:72658575-72658594 MS.gene002308:CDS 55.0%
TGAATCGCGCTGAGGTGGTT+AGG - chr2.3:72658619-72658638 MS.gene002308:CDS 55.0%
TGATGAGAATGAGGCGGAGG+AGG - chr2.3:72657981-72658000 MS.gene002308:CDS 55.0%
TTGATCCTCGTCGGAGGAAG+AGG + chr2.3:72657488-72657507 None:intergenic 55.0%
! AAGAAAACCACCGGTGGTGG+TGG - chr2.3:72657952-72657971 MS.gene002308:CDS 55.0%
! CGCTTAGTTCCGGACTTGGT+TGG + chr2.3:72657889-72657908 None:intergenic 55.0%
! GCACCGGAGTTGATTGGACT+TGG + chr2.3:72657867-72657886 None:intergenic 55.0%
! GGGGATTTTGTGGCGAAGAC+TGG - chr2.3:72658090-72658109 MS.gene002308:CDS 55.0%
! TGGTTGGCACCGGAGTTGAT+TGG + chr2.3:72657873-72657892 None:intergenic 55.0%
!! GGAGGAGGGTTTTTGGAAGC+GGG + chr2.3:72657664-72657683 None:intergenic 55.0%
AGGTGGTTGATCCTCGTCGG+AGG + chr2.3:72657494-72657513 None:intergenic 60.0%
ATCAGAACCACCACCACCGG+TGG + chr2.3:72657962-72657981 None:intergenic 60.0%
ATCCTCGTCGGAGGAAGAGG+CGG + chr2.3:72657485-72657504 None:intergenic 60.0%
CGTGCCGCCGAAAGTAACAC+TGG - chr2.3:72657907-72657926 MS.gene002308:CDS 60.0%
GAAGTTGCAGGCTGCCGAGA+TGG - chr2.3:72658587-72658606 MS.gene002308:CDS 60.0%
GGCACGCTTAGTTCCGGACT+TGG + chr2.3:72657893-72657912 None:intergenic 60.0%
TTCGGCGGCACGCTTAGTTC+CGG + chr2.3:72657899-72657918 None:intergenic 60.0%
! ACGAGAGCGAGGCGTTTCTG+TGG + chr2.3:72657448-72657467 None:intergenic 60.0%
! ACTCCGGTGCCAACCAAGTC+CGG - chr2.3:72657877-72657896 MS.gene002308:CDS 60.0%
! GCGAGGCGTTTCTGTGGCTT+TGG + chr2.3:72657442-72657461 None:intergenic 60.0%
! GTTCCGGACTTGGTTGGCAC+CGG + chr2.3:72657883-72657902 None:intergenic 60.0%
!! GGGTTGAGTTGGAGGAGAGG+TGG - chr2.3:72658562-72658581 MS.gene002308:CDS 60.0%
GGCTGCGGGTATAGCTGTGC+TGG - chr2.3:72658491-72658510 MS.gene002308:CDS 65.0%
TCGTCGGAGGAAGAGGCGGT+GGG + chr2.3:72657481-72657500 None:intergenic 65.0%
CACCGCCTCTTCCTCCGACG+AGG - chr2.3:72657480-72657499 MS.gene002308:CDS 70.0%
CGGAGGAAGAGGCGGTGGGT+GGG + chr2.3:72657477-72657496 None:intergenic 70.0%
CTCGTCGGAGGAAGAGGCGG+TGG + chr2.3:72657482-72657501 None:intergenic 70.0%
GTGGGTCGTCGACGAGAGCG+AGG + chr2.3:72657459-72657478 None:intergenic 70.0%
TCGGAGGAAGAGGCGGTGGG+TGG + chr2.3:72657478-72657497 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 72657427 72658692 72657427 ID=MS.gene002308
chr2.3 mRNA 72657427 72658692 72657427 ID=MS.gene002308.t1;Parent=MS.gene002308
chr2.3 exon 72657427 72658692 72657427 ID=MS.gene002308.t1.exon1;Parent=MS.gene002308.t1
chr2.3 CDS 72657427 72658692 72657427 ID=cds.MS.gene002308.t1;Parent=MS.gene002308.t1
Gene Sequence

>MS.gene002308

ATGGCGCCAAAGCCAAAGCCACAGAAACGCCTCGCTCTCGTCGACGACCCACCCACCGCCTCTTCCTCCGACGAGGATCAACCACCTTCAACCCAAAAACCAGCCGACAAAGTAGTCAACGAAGAACATGAAGATTCATCCTCAGAAGAAGAAGGAGATGGAGAAGAAGAAGGTTCTTCATCTGAAGAAGAAGAAGATAATCAAACTCAACAAACTCCTTCAAAAGATTCAAAACCCGCTTCCAAAAACCCTCCTCCTTCTACTCCTATCTCTACCCCTAAACCCGCTGAATCTGAATCCGGCTCAGAATCCGGTTCTGAATCTGGAACCGAATCCGATTCTGAACCGGAACAGAAATCGGAACCCACTCCACCTCCTAACCCTAAAGTTAAACCACTTGCTTCAAAGCCCATGAAAACCCAAACCCAAGTCCAAGCCCAAGTCCAATCAACTCCGGTGCCAACCAAGTCCGGAACTAAGCGTGCCGCCGAAAGTAACACTGGAAACGATTCAAAACGTTCCAAGAAGAAAACCACCGGTGGTGGTGGTTCTGATGATGAGAATGAGGCGGAGGAGGATGTGAAATTGACTGGTGAAGACTCGAAGAAGAACTTTCAGAGATTGTTTAGTGAAGAAGATGAGCTTGTGATTCTCAAAGGACTTGGGGATTTTGTGGCGAAGACTGGAAAGGATCCGCTGAAGGAAGCAGCTGCATTTCACGGTTTCGTGAAGAAATCGATGAAAGCTGAGGCCAATGCTCAGCAATTGAAGAGAAAGGTTCGTGGTTTGAAGAAGAAGTTTGAAAGCAGTGACAATTTTACCAAAGCTCATGATAAGAGAGCATTTGATCTTTTCAAGGTTTGGAGCAAAAATGCTTCTAAGGAAGCTGAAGAAAACGGAAAATCTAACGAGAAAATCACAAAGAGTGCTAAGAAGGAAGCTCCTGTTAAAAATGGTGGTTCTGCTAGGAAGGAATTAGCTATAGTTACTAAGAATGAAAGTGGAAAAGTGGAAAGTGGTGTTGGTAAGAGTTTCATTTTGAGCGAACTGGTTAAATTTGATGAGGCTGCGGGTATAGCTGTGCTGGATAAGGATGCTGCAAAAAGCGGTTTGGAATTGATGGGGGAGTCAGATAGGGTTGAGTTGGAGGAGAGGTGGAAGAAGTTGCAGGCTGCCGAGATGGAAGTGTTTTTGAATCGCGCTGAGGTGGTTAGGGAGCAGACTAGATTGGCATTGCAGGAACTCAAGAAGAAATCAAGCAAATAG
Protein sequence

>MS.gene002308.t1

MAPKPKPQKRLALVDDPPTASSSDEDQPPSTQKPADKVVNEEHEDSSSEEEGDGEEEGSSSEEEEDNQTQQTPSKDSKPASKNPPPSTPISTPKPAESESGSESGSESGTESDSEPEQKSEPTPPPNPKVKPLASKPMKTQTQVQAQVQSTPVPTKSGTKRAAESNTGNDSKRSKKKTTGGGGSDDENEAEEDVKLTGEDSKKNFQRLFSEEDELVILKGLGDFVAKTGKDPLKEAAAFHGFVKKSMKAEANAQQLKRKVRGLKKKFESSDNFTKAHDKRAFDLFKVWSKNASKEAEENGKSNEKITKSAKKEAPVKNGGSARKELAIVTKNESGKVESGVGKSFILSELVKFDEAAGIAVLDKDAAKSGLELMGESDRVELEERWKKLQAAEMEVFLNRAEVVREQTRLALQELKKKSSK