AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002473

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002473.t1 MTR_2g014060 85.014 347 27 4 1 333 1 336 1.11e-164 462
MS.gene002473.t1 MTR_2g096740 64.444 90 26 2 12 95 45 134 1.79e-33 125
MS.gene002473.t1 MTR_2g096740 64.444 90 26 2 12 95 60 149 2.10e-33 125
MS.gene002473.t1 MTR_8g027295 64.706 85 29 1 19 102 17 101 2.58e-32 121
MS.gene002473.t1 MTR_8g068210 84.127 63 9 1 26 88 33 94 4.93e-31 120
MS.gene002473.t1 MTR_4g461080 76.471 68 13 2 11 76 14 80 5.99e-31 118
MS.gene002473.t1 MTR_7g024670 55.882 102 34 2 11 111 62 153 8.71e-31 120
MS.gene002473.t1 MTR_4g088580 64.706 85 19 2 26 100 56 139 1.42e-29 117
MS.gene002473.t1 MTR_2g093220 77.049 61 11 1 22 79 34 94 1.67e-29 114
MS.gene002473.t1 MTR_3g091820 73.846 65 14 1 19 80 34 98 2.87e-29 114
MS.gene002473.t1 MTR_8g479350 82.143 56 10 0 23 78 66 121 4.67e-29 114
MS.gene002473.t1 MTR_3g090430 70.769 65 16 1 17 81 46 107 7.06e-29 114
MS.gene002473.t1 MTR_3g077750 81.818 55 10 0 21 75 57 111 8.46e-29 114
MS.gene002473.t1 MTR_5g031440 86.792 53 7 0 23 75 41 93 1.31e-28 113
MS.gene002473.t1 MTR_7g059400 64.865 74 25 1 6 79 58 130 1.81e-28 113
MS.gene002473.t1 MTR_1g077600 65.217 69 19 1 18 81 31 99 3.19e-28 110
MS.gene002473.t1 MTR_1g077600 65.217 69 19 1 18 81 31 99 3.66e-28 111
MS.gene002473.t1 MTR_4g022370 65.333 75 21 2 10 79 62 136 7.91e-28 111
MS.gene002473.t1 MTR_4g109980 86.000 50 7 0 26 75 41 90 9.18e-28 110
MS.gene002473.t1 MTR_4g063780 40.000 175 66 5 22 181 71 221 1.50e-27 110
MS.gene002473.t1 MTR_1g056810 79.245 53 11 0 27 79 14 66 9.37e-27 107
MS.gene002473.t1 MTR_2g059540 85.417 48 7 0 26 73 32 79 1.40e-26 104
MS.gene002473.t1 MTR_8g079060 62.667 75 23 2 22 91 22 96 3.79e-26 104
MS.gene002473.t1 MTR_2g014170 87.500 48 6 0 26 73 46 93 1.52e-25 104
MS.gene002473.t1 MTR_8g015840 71.186 59 17 0 26 84 21 79 1.53e-25 102
MS.gene002473.t1 MTR_4g089095 74.545 55 13 1 27 81 52 105 5.37e-24 100
MS.gene002473.t1 MTR_4g089095 74.545 55 13 1 27 81 18 71 6.95e-24 99.0
MS.gene002473.t1 MTR_2g013370 62.857 70 23 2 14 81 33 101 7.50e-24 99.0
MS.gene002473.t1 MTR_3g435480 66.667 57 19 0 27 83 138 194 1.38e-23 101
MS.gene002473.t1 MTR_7g010950 70.370 54 16 0 27 80 137 190 2.25e-23 100
MS.gene002473.t1 MTR_4g082060 66.667 57 19 0 27 83 124 180 7.46e-23 99.0
MS.gene002473.t1 MTR_7g086780 54.167 72 33 0 7 78 81 152 7.98e-23 98.6
MS.gene002473.t1 MTR_6g012450 52.273 88 33 2 17 95 125 212 1.46e-22 98.6
MS.gene002473.t1 MTR_8g044220 66.667 54 18 0 27 80 120 173 1.97e-22 97.8
MS.gene002473.t1 MTR_2g016030 69.231 52 16 0 27 78 49 100 2.87e-22 92.0
MS.gene002473.t1 MTR_6g027450 64.815 54 19 0 26 79 90 143 4.67e-22 95.1
MS.gene002473.t1 MTR_6g027460 66.038 53 18 0 26 78 97 149 5.10e-22 95.9
MS.gene002473.t1 MTR_5g041420 54.545 77 31 1 4 80 121 193 1.15e-20 91.3
MS.gene002473.t1 MTR_5g041380 63.793 58 21 0 27 84 129 186 8.26e-20 89.4
MS.gene002473.t1 MTR_5g041530 65.385 52 18 0 27 78 142 193 1.03e-19 89.4
MS.gene002473.t1 MTR_5g041400 62.712 59 22 0 27 85 121 179 1.98e-19 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002473.t1 AT5G60850 61.957 92 29 2 18 109 44 129 1.36e-32 123
MS.gene002473.t1 AT5G60200 72.059 68 15 1 22 85 48 115 6.80e-32 120
MS.gene002473.t1 AT5G62940 73.913 69 13 1 7 75 60 123 1.30e-31 122
MS.gene002473.t1 AT2G28510 75.806 62 15 0 23 84 46 107 2.36e-30 117
MS.gene002473.t1 AT5G65590 43.976 166 72 4 15 177 31 178 1.16e-29 115
MS.gene002473.t1 AT1G51700 68.919 74 20 2 26 99 34 104 1.29e-29 112
MS.gene002473.t1 AT1G07640 66.216 74 23 1 8 79 2 75 1.54e-29 114
MS.gene002473.t1 AT1G07640 66.216 74 23 1 8 79 58 131 2.11e-29 115
MS.gene002473.t1 AT1G07640 66.216 74 23 1 8 79 66 139 2.66e-29 115
MS.gene002473.t1 AT3G61850 61.176 85 30 2 19 102 55 137 2.78e-29 114
MS.gene002473.t1 AT3G61850 61.176 85 30 2 19 102 55 137 2.78e-29 114
MS.gene002473.t1 AT3G52440 71.212 66 19 0 27 92 27 92 3.36e-29 112
MS.gene002473.t1 AT3G61850 61.176 85 30 2 19 102 67 149 3.78e-29 114
MS.gene002473.t1 AT3G52440 71.212 66 19 0 27 92 46 111 3.92e-29 113
MS.gene002473.t1 AT3G61850 61.176 85 30 2 19 102 55 137 4.06e-29 114
MS.gene002473.t1 AT3G61850 61.176 85 30 2 19 102 67 149 4.91e-29 114
MS.gene002473.t1 AT3G45610 70.312 64 19 0 23 86 38 101 5.45e-29 112
MS.gene002473.t1 AT2G28810 63.380 71 26 0 6 76 58 128 1.06e-28 113
MS.gene002473.t1 AT2G37590 76.786 56 13 0 26 81 90 145 1.29e-28 113
MS.gene002473.t1 AT2G28810 63.380 71 26 0 6 76 75 145 1.55e-28 113
MS.gene002473.t1 AT4G21050 66.176 68 23 0 22 89 21 88 2.84e-28 109
MS.gene002473.t1 AT3G55370 75.000 60 15 0 27 86 78 137 3.47e-28 112
MS.gene002473.t1 AT5G66940 49.091 110 51 3 27 131 34 143 3.53e-28 109
MS.gene002473.t1 AT3G55370 75.000 60 15 0 27 86 78 137 4.29e-28 112
MS.gene002473.t1 AT3G55370 64.384 73 23 1 17 86 110 182 5.87e-28 112
MS.gene002473.t1 AT1G28310 80.357 56 11 0 26 81 28 83 9.54e-28 110
MS.gene002473.t1 AT1G21340 75.862 58 14 0 27 84 40 97 9.59e-28 109
MS.gene002473.t1 AT4G00940 75.439 57 14 0 23 79 66 122 1.45e-27 109
MS.gene002473.t1 AT4G00940 75.439 57 14 0 23 79 66 122 1.45e-27 109
MS.gene002473.t1 AT4G00940 75.439 57 14 0 23 79 66 122 1.45e-27 109
MS.gene002473.t1 AT1G28310 80.357 56 11 0 26 81 52 107 1.59e-27 110
MS.gene002473.t1 AT5G02460 59.783 92 36 1 26 117 96 186 2.87e-27 110
MS.gene002473.t1 AT3G21270 84.314 51 8 0 26 76 30 80 1.29e-26 104
MS.gene002473.t1 AT4G38000 50.000 120 40 3 26 143 42 143 1.42e-26 105
MS.gene002473.t1 AT4G24060 73.684 57 15 0 23 79 51 107 3.44e-26 107
MS.gene002473.t1 AT3G50410 77.193 57 12 1 27 82 32 88 3.47e-26 105
MS.gene002473.t1 AT2G46590 74.545 55 13 1 19 72 61 115 1.52e-24 102
MS.gene002473.t1 AT1G64620 66.129 62 16 1 18 74 37 98 1.54e-24 102
MS.gene002473.t1 AT1G47655 74.510 51 13 0 23 73 27 77 1.60e-24 99.4
MS.gene002473.t1 AT2G46590 74.545 55 13 1 19 72 73 127 1.67e-24 102
MS.gene002473.t1 AT5G62430 52.500 80 35 1 2 78 28 107 2.31e-23 98.2
MS.gene002473.t1 AT4G21040 62.687 67 25 0 27 93 27 93 3.56e-23 96.3
MS.gene002473.t1 AT3G47500 70.370 54 16 0 27 80 112 165 6.31e-23 99.4
MS.gene002473.t1 AT1G69570 58.209 67 28 0 12 78 119 185 1.11e-22 98.2
MS.gene002473.t1 AT5G39660 57.971 69 25 1 10 78 127 191 2.04e-22 97.8
MS.gene002473.t1 AT5G39660 57.971 69 25 1 10 78 127 191 2.04e-22 97.8
MS.gene002473.t1 AT5G39660 57.971 69 25 1 10 78 127 191 2.04e-22 97.8
MS.gene002473.t1 AT2G34140 57.746 71 27 1 11 78 41 111 3.19e-22 92.0
MS.gene002473.t1 AT1G29160 59.701 67 24 1 15 78 49 115 4.86e-22 91.7
MS.gene002473.t1 AT4G21080 66.667 57 18 1 27 83 27 82 1.04e-21 92.8
MS.gene002473.t1 AT1G26790 65.385 52 18 0 27 78 113 164 1.15e-20 92.0
MS.gene002473.t1 AT4G21030 48.611 72 37 0 22 93 18 89 2.65e-16 76.6

Find 90 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCCTCTGATCAATCTTTA+TGG 0.208599 2.1:-70938571 MS.gene002473:CDS
GGTAGCGGTGGTGTTGCTGC+TGG 0.285628 2.1:-70938458 MS.gene002473:CDS
GGGTAGTGGATCTGCTTCTT+TGG 0.299081 2.1:-70938435 MS.gene002473:CDS
CAACATTGAAACCTTGTAAA+AGG 0.337370 2.1:+70938816 None:intergenic
GTAGCGGTGGTGTTGCTGCT+GGG 0.368263 2.1:-70938457 MS.gene002473:CDS
ATTGGTGTTGGTGCTGGTGC+TGG 0.371549 2.1:-70938500 MS.gene002473:CDS
CTTCTTTGGCTCTGAATCAA+TGG 0.377878 2.1:-70938421 MS.gene002473:CDS
GTTGGAGTTGGTGTTGGTCT+TGG 0.379165 2.1:-70938857 MS.gene002473:CDS
TGGTGTTGAGGATGAAGTTT+TGG 0.384562 2.1:+70939129 None:intergenic
TTCTTTCAACTAGGTGGTAA+TGG 0.386741 2.1:-70938737 MS.gene002473:CDS
AATCAATGGCATGATCTGTC+TGG 0.392409 2.1:-70938407 MS.gene002473:CDS
TTGCTACTTACAATGAAAGT+TGG 0.396849 2.1:-70938625 MS.gene002473:CDS
TTCCCTAAGGAATTACTTGA+TGG 0.409259 2.1:+70939109 None:intergenic
TGAAAGAATTGTTGCGGCGG+TGG 0.414683 2.1:+70938752 None:intergenic
ACACCATCAAGTAATTCCTT+AGG 0.417503 2.1:-70939112 MS.gene002473:CDS
CCACTATTGATGAAGCTTTG+AGG 0.422498 2.1:+70938602 None:intergenic
ATCAACACCACTTCAACTAA+TGG 0.426570 2.1:-70938542 MS.gene002473:CDS
TGTTGCGGCGGTGGACGATT+CGG 0.426876 2.1:+70938761 None:intergenic
GTTGGTGTTGGAGTTGGTGT+TGG 0.430153 2.1:-70938863 MS.gene002473:CDS
GCTGGTGGTAGCCGTGGTGC+TGG 0.442217 2.1:-70938482 MS.gene002473:CDS
CCATCGCAGCCATGGTCAAC+TGG 0.443933 2.1:+70939047 None:intergenic
TATTGGTGGTGGTTGTCGTA+AGG 0.444825 2.1:-70939161 MS.gene002473:CDS
GCAAAACATGCAGAAGGTAC+TGG 0.452080 2.1:-70939213 MS.gene002473:CDS
GAAAGGATTGGTGTTGGTGC+TGG 0.452826 2.1:-70938506 MS.gene002473:CDS
GAATGATTAAATGCCGCAAA+AGG 0.453309 2.1:+70938944 None:intergenic
AGCCGTGGTGCTGGTGGTAG+CGG 0.461359 2.1:-70938473 MS.gene002473:CDS
CAGAATGTTGGTGTTGGAGT+TGG 0.465123 2.1:-70938869 MS.gene002473:CDS
GTAGCATTAACCATGCTAGA+TGG 0.472281 2.1:+70938668 None:intergenic
CACCATCAAGTAATTCCTTA+GGG 0.476186 2.1:-70939111 MS.gene002473:CDS
TAGCGGTGGTGTTGCTGCTG+GGG 0.478385 2.1:-70938456 MS.gene002473:CDS
TTACGACAACCACCACCAAT+AGG 0.480617 2.1:+70939163 None:intergenic
ACATTGAGAAATGTTCCTAT+TGG 0.486939 2.1:-70939178 MS.gene002473:CDS
GTGGCAGTGTTGGCTGAGAC+AGG 0.487687 2.1:+70939080 None:intergenic
TCCACCACCATTAGTTGAAG+TGG 0.494139 2.1:+70938535 None:intergenic
CCTCAAAGCTTCATCAATAG+TGG 0.497822 2.1:-70938602 MS.gene002473:CDS
CTAGGACACTTCTGAGGTTG+AGG 0.509691 2.1:+70939304 None:intergenic
CTCAACCTCAGAAGTGTCCT+AGG 0.514646 2.1:-70939303 MS.gene002473:CDS
CCGCAACAATTCTTTCAACT+AGG 0.517280 2.1:-70938746 MS.gene002473:CDS
TTTGAACAGTCTCAGAATGT+TGG 0.527603 2.1:-70938881 MS.gene002473:CDS
CCAGTTGACCATGGCTGCGA+TGG 0.534868 2.1:-70939047 MS.gene002473:CDS
TCGGTTGATTGTGGCAGTGT+TGG 0.542995 2.1:+70939070 None:intergenic
ACCACTTCAACTAATGGTGG+TGG 0.543681 2.1:-70938536 MS.gene002473:CDS
TTTGATTCCTCCATCTAGCA+TGG 0.549167 2.1:-70938678 MS.gene002473:CDS
ATTGGTGGTGGTTGTCGTAA+GGG 0.550492 2.1:-70939160 MS.gene002473:CDS
CGCAGCCATGGTCAACTGGT+CGG 0.551583 2.1:+70939051 None:intergenic
TTGAGAAATGTTCCTATTGG+TGG 0.552839 2.1:-70939175 MS.gene002473:CDS
AGAAATGTTCCTATTGGTGG+TGG 0.559899 2.1:-70939172 MS.gene002473:CDS
ATCAATGGCATGATCTGTCT+GGG 0.564597 2.1:-70938406 MS.gene002473:CDS
AAGAACGTGGTGATGGTGGA+AGG 0.564755 2.1:-70939360 MS.gene002473:CDS
AGCGGTGGTGTTGCTGCTGG+GGG 0.569854 2.1:-70938455 MS.gene002473:CDS
GTTGTTGTAATAGCAGAACT+TGG 0.576616 2.1:+70939264 None:intergenic
GGTGTTGGTGCTGGTGCTGG+TGG 0.577339 2.1:-70938497 MS.gene002473:CDS
TGTGCTGAAGAGTGTGCTGA+TGG 0.579842 2.1:+70938908 None:intergenic
TGCAGAAGGTACTGGACTCA+AGG 0.580923 2.1:-70939205 MS.gene002473:CDS
CGTGGTGATGGTGGAAGGAG+AGG 0.581943 2.1:-70939355 MS.gene002473:CDS
GTCAACTGGTCGGTTGATTG+TGG 0.591951 2.1:+70939061 None:intergenic
ATTCAAACCTCGTGGTTCAG+AGG 0.592802 2.1:+70938700 None:intergenic
CGTGGTGCTGGTGGTAGCGG+TGG 0.594465 2.1:-70938470 MS.gene002473:CDS
GAGCAAGAACGTGGTGATGG+TGG 0.595958 2.1:-70939364 MS.gene002473:CDS
GCTGGTGCTGGTGGTAGCCG+TGG 0.599832 2.1:-70938488 MS.gene002473:CDS
CAGTCTCAGAATGTTGGTGT+TGG 0.601097 2.1:-70938875 MS.gene002473:CDS
GGTGGTAGCCGTGGTGCTGG+TGG 0.612351 2.1:-70938479 MS.gene002473:CDS
CAACAATTCTTTCAACTAGG+TGG 0.614943 2.1:-70938743 MS.gene002473:CDS
GGAATTACTTGATGGTGTTG+AGG 0.615613 2.1:+70939117 None:intergenic
TCTTCTGCAAAACATGCAGA+AGG 0.615692 2.1:-70939219 MS.gene002473:CDS
GGTGGAAATTCTGAAAGGAT+TGG 0.619425 2.1:-70938518 MS.gene002473:CDS
AGAAGAAACGAGGCTGAGAG+AGG 0.619615 2.1:+70939236 None:intergenic
ATGGAGCAAGAACGTGGTGA+TGG 0.620486 2.1:-70939367 MS.gene002473:CDS
CGTGGTTCAGAGGTAAACAT+TGG 0.628309 2.1:+70938710 None:intergenic
ATGGTGGTGGAAATTCTGAA+AGG 0.635909 2.1:-70938523 MS.gene002473:CDS
AATTCTGAAAGGATTGGTGT+TGG 0.637664 2.1:-70938512 MS.gene002473:CDS
AACACCACTTCAACTAATGG+TGG 0.642679 2.1:-70938539 MS.gene002473:CDS
TTTCAACTAGGTGGTAATGG+AGG 0.647517 2.1:-70938734 MS.gene002473:CDS
CCTAGTTGAAAGAATTGTTG+CGG 0.647938 2.1:+70938746 None:intergenic
CACCGCTACCACCAGCACCA+CGG 0.647987 2.1:+70938471 None:intergenic
AGACAGGGAAGAATTCCCTA+AGG 0.650183 2.1:+70939096 None:intergenic
GCATTAACCATGCTAGATGG+AGG 0.653768 2.1:+70938671 None:intergenic
TCACACCTAGGACACTTCTG+AGG 0.655155 2.1:+70939298 None:intergenic
ATCAACCGACCAGTTGACCA+TGG 0.659300 2.1:-70939056 MS.gene002473:CDS
CATCAACAAGATCACTGAGG+AGG 0.672156 2.1:+70938377 None:intergenic
GGAATCAAATTCAAACCTCG+TGG 0.678570 2.1:+70938692 None:intergenic
TGAGAGATGGAGCAAGAACG+TGG 0.685685 2.1:-70939373 None:intergenic
AGTTGAAAGAATTGTTGCGG+CGG 0.685998 2.1:+70938749 None:intergenic
TGGCAGTGTTGGCTGAGACA+GGG 0.687589 2.1:+70939081 None:intergenic
ACTCCATAAAGATTGATCAG+AGG 0.693689 2.1:+70938568 None:intergenic
GTGTTGAATGAATCACACCT+AGG 0.703840 2.1:+70939286 None:intergenic
GCTCTTGTAAGCTCATCACA+AGG 0.707366 2.1:-70938785 MS.gene002473:CDS
AGAAGGTACTGGACTCAAGG+TGG 0.711298 2.1:-70939202 MS.gene002473:CDS
ATGTTTACCTCTGAACCACG+AGG 0.723992 2.1:-70938707 MS.gene002473:CDS
CAACATCAACAAGATCACTG+AGG 0.799835 2.1:+70938374 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
ACATTGAGAAATGTTCCTAT+TGG - chr2.1:70938577-70938596 MS.gene002473:CDS 30.0%
CAACATTGAAACCTTGTAAA+AGG + chr2.1:70938942-70938961 None:intergenic 30.0%
! TCAAATTTGAGCCTTTTACA+AGG - chr2.1:70938928-70938947 MS.gene002473:CDS 30.0%
! TTGCTACTTACAATGAAAGT+TGG - chr2.1:70939130-70939149 MS.gene002473:CDS 30.0%
ACACCATCAAGTAATTCCTT+AGG - chr2.1:70938643-70938662 MS.gene002473:CDS 35.0%
ACTCCATAAAGATTGATCAG+AGG + chr2.1:70939190-70939209 None:intergenic 35.0%
ATCAACACCACTTCAACTAA+TGG - chr2.1:70939213-70939232 MS.gene002473:CDS 35.0%
CAACAATTCTTTCAACTAGG+TGG - chr2.1:70939012-70939031 MS.gene002473:CDS 35.0%
CACCATCAAGTAATTCCTTA+GGG - chr2.1:70938644-70938663 MS.gene002473:CDS 35.0%
CCTAGTTGAAAGAATTGTTG+CGG + chr2.1:70939012-70939031 None:intergenic 35.0%
GAATGATTAAATGCCGCAAA+AGG + chr2.1:70938814-70938833 None:intergenic 35.0%
GTTGTTGTAATAGCAGAACT+TGG + chr2.1:70938494-70938513 None:intergenic 35.0%
TTCCCTAAGGAATTACTTGA+TGG + chr2.1:70938649-70938668 None:intergenic 35.0%
TTCTTTCAACTAGGTGGTAA+TGG - chr2.1:70939018-70939037 MS.gene002473:CDS 35.0%
TTGAGAAATGTTCCTATTGG+TGG - chr2.1:70938580-70938599 MS.gene002473:CDS 35.0%
TTGATAAAAAGAAGCAGCAG+AGG + chr2.1:70938767-70938786 None:intergenic 35.0%
TTTGAACAGTCTCAGAATGT+TGG - chr2.1:70938874-70938893 MS.gene002473:CDS 35.0%
! AATTCTGAAAGGATTGGTGT+TGG - chr2.1:70939243-70939262 MS.gene002473:CDS 35.0%
!! TCTGCTGCTTCTTTTTATCA+AGG - chr2.1:70938766-70938785 MS.gene002473:CDS 35.0%
!!! TTTTATCAAGGAGGTGTTGT+TGG - chr2.1:70938778-70938797 MS.gene002473:CDS 35.0%
AACACCACTTCAACTAATGG+TGG - chr2.1:70939216-70939235 MS.gene002473:CDS 40.0%
AATCAATGGCATGATCTGTC+TGG - chr2.1:70939348-70939367 MS.gene002473:CDS 40.0%
AGAAATGTTCCTATTGGTGG+TGG - chr2.1:70938583-70938602 MS.gene002473:CDS 40.0%
AGTTGAAAGAATTGTTGCGG+CGG + chr2.1:70939009-70939028 None:intergenic 40.0%
ATCAATGGCATGATCTGTCT+GGG - chr2.1:70939349-70939368 MS.gene002473:CDS 40.0%
CCACTATTGATGAAGCTTTG+AGG + chr2.1:70939156-70939175 None:intergenic 40.0%
CCGCAACAATTCTTTCAACT+AGG - chr2.1:70939009-70939028 MS.gene002473:CDS 40.0%
CCTCAAAGCTTCATCAATAG+TGG - chr2.1:70939153-70939172 MS.gene002473:CDS 40.0%
GAGCCTCTGATCAATCTTTA+TGG - chr2.1:70939184-70939203 MS.gene002473:CDS 40.0%
GGAATCAAATTCAAACCTCG+TGG + chr2.1:70939066-70939085 None:intergenic 40.0%
GTAGCATTAACCATGCTAGA+TGG + chr2.1:70939090-70939109 None:intergenic 40.0%
GTGTTGAATGAATCACACCT+AGG + chr2.1:70938472-70938491 None:intergenic 40.0%
TCTTCTGCAAAACATGCAGA+AGG - chr2.1:70938536-70938555 MS.gene002473:CDS 40.0%
TTTGATTCCTCCATCTAGCA+TGG - chr2.1:70939077-70939096 MS.gene002473:CDS 40.0%
! CATGTTTTGCAGAAGAAACG+AGG + chr2.1:70938532-70938551 None:intergenic 40.0%
! GCTGCTTCTTTTTATCAAGG+AGG - chr2.1:70938769-70938788 MS.gene002473:CDS 40.0%
! GGTGGAAATTCTGAAAGGAT+TGG - chr2.1:70939237-70939256 MS.gene002473:CDS 40.0%
!! ATGGTGGTGGAAATTCTGAA+AGG - chr2.1:70939232-70939251 MS.gene002473:CDS 40.0%
!! CTTCTTTGGCTCTGAATCAA+TGG - chr2.1:70939334-70939353 MS.gene002473:CDS 40.0%
!! GGAATTACTTGATGGTGTTG+AGG + chr2.1:70938641-70938660 None:intergenic 40.0%
!! TGGTGTTGAGGATGAAGTTT+TGG + chr2.1:70938629-70938648 None:intergenic 40.0%
!! TTTCAACTAGGTGGTAATGG+AGG - chr2.1:70939021-70939040 MS.gene002473:CDS 40.0%
ACCACTTCAACTAATGGTGG+TGG - chr2.1:70939219-70939238 MS.gene002473:CDS 45.0%
AGACAGGGAAGAATTCCCTA+AGG + chr2.1:70938662-70938681 None:intergenic 45.0%
ATGTTTACCTCTGAACCACG+AGG - chr2.1:70939048-70939067 MS.gene002473:CDS 45.0%
ATTCAAACCTCGTGGTTCAG+AGG + chr2.1:70939058-70939077 None:intergenic 45.0%
CAGTCTCAGAATGTTGGTGT+TGG - chr2.1:70938880-70938899 MS.gene002473:CDS 45.0%
CGTGGTTCAGAGGTAAACAT+TGG + chr2.1:70939048-70939067 None:intergenic 45.0%
GCATTAACCATGCTAGATGG+AGG + chr2.1:70939087-70939106 None:intergenic 45.0%
GCTCTTGTAAGCTCATCACA+AGG - chr2.1:70938970-70938989 MS.gene002473:CDS 45.0%
TCCACCACCATTAGTTGAAG+TGG + chr2.1:70939223-70939242 None:intergenic 45.0%
TTACGACAACCACCACCAAT+AGG + chr2.1:70938595-70938614 None:intergenic 45.0%
! GCAAAACATGCAGAAGGTAC+TGG - chr2.1:70938542-70938561 MS.gene002473:CDS 45.0%
! TGGTTACATGTCGCCTTTTG+CGG - chr2.1:70938798-70938817 MS.gene002473:CDS 45.0%
!! ATTGGTGGTGGTTGTCGTAA+GGG - chr2.1:70938595-70938614 MS.gene002473:CDS 45.0%
!! CAGAATGTTGGTGTTGGAGT+TGG - chr2.1:70938886-70938905 MS.gene002473:CDS 45.0%
!! TATTGGTGGTGGTTGTCGTA+AGG - chr2.1:70938594-70938613 MS.gene002473:CDS 45.0%
AGAAGAAACGAGGCTGAGAG+AGG + chr2.1:70938522-70938541 None:intergenic 50.0%
ATCAACCGACCAGTTGACCA+TGG - chr2.1:70938699-70938718 MS.gene002473:CDS 50.0%
ATGGAGCAAGAACGTGGTGA+TGG - chr2.1:70938388-70938407 MS.gene002473:CDS 50.0%
GTCAACTGGTCGGTTGATTG+TGG + chr2.1:70938697-70938716 None:intergenic 50.0%
TCACACCTAGGACACTTCTG+AGG + chr2.1:70938460-70938479 None:intergenic 50.0%
TCGGTTGATTGTGGCAGTGT+TGG + chr2.1:70938688-70938707 None:intergenic 50.0%
TGAAAGAATTGTTGCGGCGG+TGG + chr2.1:70939006-70939025 None:intergenic 50.0%
! TGTGCTGAAGAGTGTGCTGA+TGG + chr2.1:70938850-70938869 None:intergenic 50.0%
!! AAGAACGTGGTGATGGTGGA+AGG - chr2.1:70938395-70938414 MS.gene002473:CDS 50.0%
!! AGAAGGTACTGGACTCAAGG+TGG - chr2.1:70938553-70938572 MS.gene002473:CDS 50.0%
!! CTAGGACACTTCTGAGGTTG+AGG + chr2.1:70938454-70938473 None:intergenic 50.0%
!! CTCAACCTCAGAAGTGTCCT+AGG - chr2.1:70938452-70938471 MS.gene002473:CDS 50.0%
!! GAAAGGATTGGTGTTGGTGC+TGG - chr2.1:70939249-70939268 MS.gene002473:CDS 50.0%
!! GGGTAGTGGATCTGCTTCTT+TGG - chr2.1:70939320-70939339 MS.gene002473:CDS 50.0%
!! GTTGGAGTTGGTGTTGGTCT+TGG - chr2.1:70938898-70938917 MS.gene002473:CDS 50.0%
!! GTTGGTGTTGGAGTTGGTGT+TGG - chr2.1:70938892-70938911 MS.gene002473:CDS 50.0%
!! TGCAGAAGGTACTGGACTCA+AGG - chr2.1:70938550-70938569 MS.gene002473:CDS 50.0%
!!! GTTTTTAGCCATCGCAGCCA+TGG + chr2.1:70938719-70938738 None:intergenic 50.0%
!! ATTGGTGTTGGTGCTGGTGC+TGG - chr2.1:70939255-70939274 MS.gene002473:CDS 55.0%
!! GAGCAAGAACGTGGTGATGG+TGG - chr2.1:70938391-70938410 MS.gene002473:CDS 55.0%
!! TGGCAGTGTTGGCTGAGACA+GGG + chr2.1:70938677-70938696 None:intergenic 55.0%
CCAGTTGACCATGGCTGCGA+TGG - chr2.1:70938708-70938727 MS.gene002473:CDS 60.0%
CCATCGCAGCCATGGTCAAC+TGG + chr2.1:70938711-70938730 None:intergenic 60.0%
CGCAGCCATGGTCAACTGGT+CGG + chr2.1:70938707-70938726 None:intergenic 60.0%
TGTTGCGGCGGTGGACGATT+CGG + chr2.1:70938997-70939016 None:intergenic 60.0%
!! CGTGGTGATGGTGGAAGGAG+AGG - chr2.1:70938400-70938419 MS.gene002473:CDS 60.0%
!! GTAGCGGTGGTGTTGCTGCT+GGG - chr2.1:70939298-70939317 MS.gene002473:CDS 60.0%
!! GTGGCAGTGTTGGCTGAGAC+AGG + chr2.1:70938678-70938697 None:intergenic 60.0%
!! TAGCGGTGGTGTTGCTGCTG+GGG - chr2.1:70939299-70939318 MS.gene002473:CDS 60.0%
CACCGCTACCACCAGCACCA+CGG + chr2.1:70939287-70939306 None:intergenic 65.0%
!! AGCCGTGGTGCTGGTGGTAG+CGG - chr2.1:70939282-70939301 MS.gene002473:CDS 65.0%
!! AGCGGTGGTGTTGCTGCTGG+GGG - chr2.1:70939300-70939319 MS.gene002473:CDS 65.0%
!! GGTAGCGGTGGTGTTGCTGC+TGG - chr2.1:70939297-70939316 MS.gene002473:CDS 65.0%
!! GGTGTTGCTGCTGGGGGTAG+TGG - chr2.1:70939306-70939325 MS.gene002473:CDS 65.0%
!! GGTGTTGGTGCTGGTGCTGG+TGG - chr2.1:70939258-70939277 MS.gene002473:CDS 65.0%
GCTGGTGGTAGCCGTGGTGC+TGG - chr2.1:70939273-70939292 MS.gene002473:CDS 70.0%
! GGTGGTAGCCGTGGTGCTGG+TGG - chr2.1:70939276-70939295 MS.gene002473:CDS 70.0%
!! CGTGGTGCTGGTGGTAGCGG+TGG - chr2.1:70939285-70939304 MS.gene002473:CDS 70.0%
!! GCTGGTGCTGGTGGTAGCCG+TGG - chr2.1:70939267-70939286 MS.gene002473:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 70938388 70939389 70938388 ID=MS.gene002473
chr2.1 mRNA 70938388 70939389 70938388 ID=MS.gene002473.t1;Parent=MS.gene002473
chr2.1 exon 70938388 70939389 70938388 ID=MS.gene002473.t1.exon1;Parent=MS.gene002473.t1
chr2.1 CDS 70938388 70939389 70938388 ID=cds.MS.gene002473.t1;Parent=MS.gene002473.t1
Gene Sequence

>MS.gene002473

ATGGAGCAAGAACGTGGTGATGGTGGAAGGAGAGGTGAGATGAGTAAGCATGTTCAAGCTCATCCTCAACCTCAGAAGTGTCCTAGGTGTGATTCATTCAACACCAAGTTCTGCTATTACAACAACTATAGCCTCTCTCAGCCTCGTTTCTTCTGCAAAACATGCAGAAGGTACTGGACTCAAGGTGGAACATTGAGAAATGTTCCTATTGGTGGTGGTTGTCGTAAGGGAAAGAAATCCAAAACTTCATCCTCAACACCATCAAGTAATTCCTTAGGGAATTCTTCCCTGTCTCAGCCAACACTGCCACAATCAACCGACCAGTTGACCATGGCTGCGATGGCTAAAAACTCTTCTTCTGTTTTTGCTTCATTTTCCTCTGCTGCTTCTTTTTATCAAGGAGGTGTTGTTGGTTACATGTCGCCTTTTGCGGCATTTAATCATTCGTTGAATTCGAATCCATCAGCACACTCTTCAGCACACACTTTTGAACAGTCTCAGAATGTTGGTGTTGGAGTTGGTGTTGGTCTTGGTTCTTCTTCAAATTTGAGCCTTTTACAAGGTTTCAATGTTGCTGCTGCTGCTCTTGTAAGCTCATCACAAGGACCGAATCGTCCACCGCCGCAACAATTCTTTCAACTAGGTGGTAATGGAGGACCAATGTTTACCTCTGAACCACGAGGTTTGAATTTGATTCCTCCATCTAGCATGGTTAATGCTACTACTTCTGTTGCTACTGATTTTGCTACTTACAATGAAAGTTGGCCTCAAAGCTTCATCAATAGTGGTAACAACAGAGCCTCTGATCAATCTTTATGGAGTACTATCAACACCACTTCAACTAATGGTGGTGGAAATTCTGAAAGGATTGGTGTTGGTGCTGGTGCTGGTGGTAGCCGTGGTGCTGGTGGTAGCGGTGGTGTTGCTGCTGGGGGTAGTGGATCTGCTTCTTTGGCTCTGAATCAATGGCATGATCTGTCTGGGTTCAATCCTCCTCAGTGA
Protein sequence

>MS.gene002473.t1

MEQERGDGGRRGEMSKHVQAHPQPQKCPRCDSFNTKFCYYNNYSLSQPRFFCKTCRRYWTQGGTLRNVPIGGGCRKGKKSKTSSSTPSSNSLGNSSLSQPTLPQSTDQLTMAAMAKNSSSVFASFSSAASFYQGGVVGYMSPFAAFNHSLNSNPSAHSSAHTFEQSQNVGVGVGVGLGSSSNLSLLQGFNVAAAALVSSSQGPNRPPPQQFFQLGGNGGPMFTSEPRGLNLIPPSSMVNATTSVATDFATYNESWPQSFINSGNNRASDQSLWSTINTTSTNGGGNSERIGVGAGAGGSRGAGGSGGVAAGGSGSASLALNQWHDLSGFNPPQ