Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002481.t1 | XP_003593614.1 | 80.3 | 299 | 41 | 4 | 1 | 299 | 29 | 309 | 1.60E-82 | 316.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002481.t1 | Q9FZA4 | 45.1 | 306 | 122 | 12 | 18 | 299 | 28 | 311 | 6.2e-27 | 122.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002481.t1 | G7ISD2 | 80.3 | 299 | 41 | 4 | 1 | 299 | 29 | 309 | 1.1e-82 | 316.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene002481.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002481.t1 | MTR_2g014170 | 88.629 | 299 | 16 | 4 | 1 | 299 | 29 | 309 | 3.12e-143 | 405 |
MS.gene002481.t1 | MTR_4g088580 | 45.479 | 365 | 113 | 19 | 1 | 299 | 40 | 384 | 3.67e-57 | 189 |
MS.gene002481.t1 | MTR_4g063780 | 68.605 | 86 | 26 | 1 | 14 | 98 | 72 | 157 | 2.45e-32 | 122 |
MS.gene002481.t1 | MTR_4g022370 | 52.101 | 119 | 44 | 2 | 1 | 118 | 66 | 172 | 7.17e-32 | 122 |
MS.gene002481.t1 | MTR_8g479350 | 71.429 | 70 | 20 | 0 | 12 | 81 | 63 | 132 | 1.04e-31 | 120 |
MS.gene002481.t1 | MTR_2g096740 | 76.190 | 63 | 15 | 0 | 17 | 79 | 62 | 124 | 1.81e-31 | 119 |
MS.gene002481.t1 | MTR_2g096740 | 76.190 | 63 | 15 | 0 | 17 | 79 | 77 | 139 | 1.95e-31 | 119 |
MS.gene002481.t1 | MTR_8g079060 | 67.647 | 68 | 22 | 0 | 13 | 80 | 25 | 92 | 7.82e-31 | 115 |
MS.gene002481.t1 | MTR_7g024670 | 65.753 | 73 | 25 | 0 | 7 | 79 | 67 | 139 | 1.11e-30 | 119 |
MS.gene002481.t1 | MTR_4g461080 | 84.211 | 57 | 9 | 0 | 13 | 69 | 25 | 81 | 1.42e-30 | 116 |
MS.gene002481.t1 | MTR_1g077600 | 70.312 | 64 | 19 | 0 | 10 | 73 | 36 | 99 | 1.92e-30 | 115 |
MS.gene002481.t1 | MTR_1g056810 | 47.407 | 135 | 65 | 2 | 7 | 141 | 2 | 130 | 2.10e-30 | 116 |
MS.gene002481.t1 | MTR_1g077600 | 70.312 | 64 | 19 | 0 | 10 | 73 | 36 | 99 | 2.23e-30 | 116 |
MS.gene002481.t1 | MTR_7g059400 | 60.417 | 96 | 34 | 2 | 13 | 105 | 72 | 166 | 6.97e-30 | 116 |
MS.gene002481.t1 | MTR_8g068210 | 61.176 | 85 | 27 | 1 | 12 | 96 | 27 | 105 | 1.21e-29 | 115 |
MS.gene002481.t1 | MTR_8g015840 | 72.727 | 66 | 16 | 1 | 13 | 78 | 16 | 79 | 1.49e-29 | 112 |
MS.gene002481.t1 | MTR_3g091820 | 76.562 | 64 | 12 | 1 | 12 | 75 | 38 | 98 | 2.25e-29 | 114 |
MS.gene002481.t1 | MTR_2g093220 | 72.059 | 68 | 18 | 1 | 3 | 69 | 25 | 92 | 2.76e-29 | 113 |
MS.gene002481.t1 | MTR_2g013370 | 69.118 | 68 | 20 | 1 | 6 | 73 | 35 | 101 | 9.47e-29 | 111 |
MS.gene002481.t1 | MTR_8g027295 | 53.333 | 105 | 34 | 3 | 3 | 107 | 11 | 100 | 9.86e-29 | 111 |
MS.gene002481.t1 | MTR_5g031440 | 79.630 | 54 | 11 | 0 | 14 | 67 | 40 | 93 | 2.01e-28 | 112 |
MS.gene002481.t1 | MTR_4g109980 | 81.132 | 53 | 10 | 0 | 15 | 67 | 38 | 90 | 1.05e-27 | 109 |
MS.gene002481.t1 | MTR_3g090430 | 73.016 | 63 | 17 | 0 | 16 | 78 | 50 | 112 | 1.07e-27 | 110 |
MS.gene002481.t1 | MTR_2g059540 | 86.000 | 50 | 7 | 0 | 16 | 65 | 30 | 79 | 1.20e-27 | 106 |
MS.gene002481.t1 | MTR_2g014060 | 77.586 | 58 | 13 | 0 | 11 | 68 | 19 | 76 | 1.51e-27 | 109 |
MS.gene002481.t1 | MTR_4g089095 | 75.000 | 60 | 14 | 1 | 15 | 74 | 48 | 106 | 2.20e-27 | 108 |
MS.gene002481.t1 | MTR_3g077750 | 82.692 | 52 | 9 | 0 | 16 | 67 | 60 | 111 | 2.49e-27 | 108 |
MS.gene002481.t1 | MTR_4g089095 | 75.000 | 60 | 14 | 1 | 15 | 74 | 14 | 72 | 2.63e-27 | 107 |
MS.gene002481.t1 | MTR_3g435480 | 62.687 | 67 | 25 | 0 | 6 | 72 | 125 | 191 | 3.32e-26 | 107 |
MS.gene002481.t1 | MTR_4g082060 | 53.947 | 76 | 35 | 0 | 6 | 81 | 111 | 186 | 7.17e-25 | 103 |
MS.gene002481.t1 | MTR_8g044220 | 50.588 | 85 | 38 | 1 | 6 | 90 | 107 | 187 | 1.41e-24 | 102 |
MS.gene002481.t1 | MTR_7g010950 | 63.934 | 61 | 22 | 0 | 11 | 71 | 129 | 189 | 1.78e-24 | 103 |
MS.gene002481.t1 | MTR_5g041380 | 45.690 | 116 | 62 | 1 | 1 | 115 | 111 | 226 | 2.69e-24 | 101 |
MS.gene002481.t1 | MTR_6g012450 | 64.407 | 59 | 21 | 0 | 11 | 69 | 130 | 188 | 5.85e-24 | 101 |
MS.gene002481.t1 | MTR_2g016030 | 61.017 | 59 | 23 | 0 | 10 | 68 | 40 | 98 | 6.56e-24 | 95.5 |
MS.gene002481.t1 | MTR_7g086780 | 55.882 | 68 | 30 | 0 | 2 | 69 | 84 | 151 | 8.71e-24 | 100 |
MS.gene002481.t1 | MTR_5g041400 | 48.000 | 100 | 52 | 0 | 1 | 100 | 103 | 202 | 1.00e-23 | 99.8 |
MS.gene002481.t1 | MTR_5g041420 | 59.375 | 64 | 26 | 0 | 6 | 69 | 127 | 190 | 1.22e-23 | 98.6 |
MS.gene002481.t1 | MTR_6g027450 | 57.812 | 64 | 27 | 0 | 6 | 69 | 78 | 141 | 1.74e-23 | 98.6 |
MS.gene002481.t1 | MTR_6g027460 | 56.250 | 64 | 28 | 0 | 6 | 69 | 85 | 148 | 1.32e-22 | 96.7 |
MS.gene002481.t1 | MTR_5g041530 | 58.209 | 67 | 28 | 0 | 6 | 72 | 129 | 195 | 2.94e-22 | 95.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002481.t1 | AT1G28310 | 42.208 | 308 | 130 | 13 | 17 | 299 | 27 | 311 | 7.61e-45 | 154 |
MS.gene002481.t1 | AT1G28310 | 42.208 | 308 | 130 | 13 | 17 | 299 | 51 | 335 | 1.26e-44 | 155 |
MS.gene002481.t1 | AT1G51700 | 44.242 | 165 | 78 | 6 | 3 | 164 | 21 | 174 | 1.50e-32 | 119 |
MS.gene002481.t1 | AT3G45610 | 39.521 | 167 | 79 | 3 | 14 | 180 | 37 | 181 | 2.26e-32 | 120 |
MS.gene002481.t1 | AT3G55370 | 70.588 | 68 | 20 | 0 | 14 | 81 | 73 | 140 | 4.76e-32 | 121 |
MS.gene002481.t1 | AT3G55370 | 70.588 | 68 | 20 | 0 | 14 | 81 | 73 | 140 | 5.64e-32 | 122 |
MS.gene002481.t1 | AT3G55370 | 70.588 | 68 | 20 | 0 | 14 | 81 | 118 | 185 | 8.19e-32 | 121 |
MS.gene002481.t1 | AT3G50410 | 65.333 | 75 | 26 | 0 | 1 | 75 | 14 | 88 | 1.07e-31 | 119 |
MS.gene002481.t1 | AT1G07640 | 78.689 | 61 | 13 | 0 | 17 | 77 | 21 | 81 | 5.46e-31 | 117 |
MS.gene002481.t1 | AT2G28810 | 81.034 | 58 | 11 | 0 | 11 | 68 | 71 | 128 | 6.18e-31 | 118 |
MS.gene002481.t1 | AT1G07640 | 78.689 | 61 | 13 | 0 | 17 | 77 | 77 | 137 | 6.67e-31 | 118 |
MS.gene002481.t1 | AT2G28810 | 81.034 | 58 | 11 | 0 | 11 | 68 | 88 | 145 | 8.18e-31 | 118 |
MS.gene002481.t1 | AT1G07640 | 78.689 | 61 | 13 | 0 | 17 | 77 | 85 | 145 | 9.19e-31 | 118 |
MS.gene002481.t1 | AT5G65590 | 73.846 | 65 | 17 | 0 | 12 | 76 | 36 | 100 | 1.37e-30 | 117 |
MS.gene002481.t1 | AT2G37590 | 65.753 | 73 | 25 | 0 | 1 | 73 | 73 | 145 | 1.75e-30 | 117 |
MS.gene002481.t1 | AT5G60200 | 64.865 | 74 | 26 | 0 | 11 | 84 | 49 | 122 | 2.85e-30 | 115 |
MS.gene002481.t1 | AT5G02460 | 87.037 | 54 | 7 | 0 | 16 | 69 | 94 | 147 | 1.30e-29 | 116 |
MS.gene002481.t1 | AT3G21270 | 78.947 | 57 | 12 | 0 | 17 | 73 | 29 | 85 | 2.61e-29 | 111 |
MS.gene002481.t1 | AT2G28510 | 39.459 | 185 | 81 | 6 | 15 | 191 | 46 | 207 | 5.08e-29 | 112 |
MS.gene002481.t1 | AT5G60850 | 54.545 | 99 | 26 | 2 | 13 | 111 | 47 | 126 | 1.47e-28 | 111 |
MS.gene002481.t1 | AT4G38000 | 78.947 | 57 | 12 | 0 | 14 | 70 | 38 | 94 | 1.65e-28 | 110 |
MS.gene002481.t1 | AT5G66940 | 66.667 | 63 | 21 | 0 | 13 | 75 | 28 | 90 | 4.34e-28 | 108 |
MS.gene002481.t1 | AT4G24060 | 66.154 | 65 | 22 | 0 | 5 | 69 | 41 | 105 | 6.15e-28 | 110 |
MS.gene002481.t1 | AT1G21340 | 68.571 | 70 | 17 | 1 | 10 | 74 | 31 | 100 | 9.14e-28 | 108 |
MS.gene002481.t1 | AT3G61850 | 66.667 | 63 | 21 | 0 | 7 | 69 | 52 | 114 | 1.52e-27 | 108 |
MS.gene002481.t1 | AT3G61850 | 66.667 | 63 | 21 | 0 | 7 | 69 | 52 | 114 | 1.52e-27 | 108 |
MS.gene002481.t1 | AT3G61850 | 65.217 | 69 | 21 | 1 | 7 | 75 | 52 | 117 | 2.11e-27 | 108 |
MS.gene002481.t1 | AT3G61850 | 66.667 | 63 | 21 | 0 | 7 | 69 | 64 | 126 | 2.43e-27 | 108 |
MS.gene002481.t1 | AT3G61850 | 65.217 | 69 | 21 | 1 | 7 | 75 | 64 | 129 | 2.85e-27 | 108 |
MS.gene002481.t1 | AT3G52440 | 74.194 | 62 | 14 | 1 | 19 | 78 | 27 | 88 | 1.86e-26 | 104 |
MS.gene002481.t1 | AT3G52440 | 74.194 | 62 | 14 | 1 | 19 | 78 | 46 | 107 | 2.55e-26 | 104 |
MS.gene002481.t1 | AT4G00940 | 75.000 | 56 | 14 | 0 | 14 | 69 | 65 | 120 | 7.83e-26 | 104 |
MS.gene002481.t1 | AT4G00940 | 75.000 | 56 | 14 | 0 | 14 | 69 | 65 | 120 | 7.83e-26 | 104 |
MS.gene002481.t1 | AT4G00940 | 75.000 | 56 | 14 | 0 | 14 | 69 | 65 | 120 | 7.83e-26 | 104 |
MS.gene002481.t1 | AT5G62940 | 82.000 | 50 | 9 | 0 | 18 | 67 | 74 | 123 | 9.05e-26 | 105 |
MS.gene002481.t1 | AT1G64620 | 75.926 | 54 | 13 | 0 | 12 | 65 | 44 | 97 | 1.14e-25 | 104 |
MS.gene002481.t1 | AT5G39660 | 63.636 | 66 | 24 | 0 | 6 | 71 | 127 | 192 | 1.19e-25 | 106 |
MS.gene002481.t1 | AT5G39660 | 63.636 | 66 | 24 | 0 | 6 | 71 | 127 | 192 | 1.19e-25 | 106 |
MS.gene002481.t1 | AT5G39660 | 63.636 | 66 | 24 | 0 | 6 | 71 | 127 | 192 | 1.19e-25 | 106 |
MS.gene002481.t1 | AT2G46590 | 78.431 | 51 | 11 | 0 | 14 | 64 | 65 | 115 | 1.34e-25 | 104 |
MS.gene002481.t1 | AT3G47500 | 71.930 | 57 | 16 | 0 | 15 | 71 | 108 | 164 | 1.36e-25 | 105 |
MS.gene002481.t1 | AT2G46590 | 78.431 | 51 | 11 | 0 | 14 | 64 | 77 | 127 | 1.61e-25 | 104 |
MS.gene002481.t1 | AT5G62430 | 67.241 | 58 | 19 | 0 | 15 | 72 | 52 | 109 | 4.79e-25 | 102 |
MS.gene002481.t1 | AT1G47655 | 72.549 | 51 | 14 | 0 | 15 | 65 | 27 | 77 | 4.28e-24 | 97.4 |
MS.gene002481.t1 | AT1G26790 | 57.353 | 68 | 27 | 1 | 2 | 69 | 98 | 163 | 9.01e-24 | 100 |
MS.gene002481.t1 | AT4G21050 | 76.000 | 50 | 12 | 0 | 19 | 68 | 26 | 75 | 9.23e-24 | 96.7 |
MS.gene002481.t1 | AT1G29160 | 56.923 | 65 | 28 | 0 | 10 | 74 | 55 | 119 | 1.44e-23 | 95.1 |
MS.gene002481.t1 | AT2G34140 | 61.017 | 59 | 23 | 0 | 10 | 68 | 51 | 109 | 1.70e-23 | 94.7 |
MS.gene002481.t1 | AT1G69570 | 56.716 | 67 | 29 | 0 | 11 | 77 | 126 | 192 | 6.25e-23 | 97.8 |
MS.gene002481.t1 | AT4G21040 | 75.510 | 49 | 12 | 0 | 19 | 67 | 27 | 75 | 1.01e-21 | 91.7 |
MS.gene002481.t1 | AT4G21080 | 71.429 | 49 | 14 | 0 | 19 | 67 | 27 | 75 | 1.16e-20 | 89.4 |
MS.gene002481.t1 | AT4G21030 | 60.870 | 46 | 18 | 0 | 19 | 64 | 23 | 68 | 5.39e-13 | 67.0 |
Find 53 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGGCTTGGAATTTAACAATT+TGG | 0.140338 | 2.1:+70813870 | MS.gene002481:CDS |
GCAAAGCTTGCAAACGTTAT+TGG | 0.143992 | 2.1:+70813296 | MS.gene002481:CDS |
AGGACTAATATTATGATTTA+AGG | 0.162696 | 2.1:-70813503 | None:intergenic |
CACCAGCTTCTTCACTTTAC+TGG | 0.188996 | 2.1:+70813962 | MS.gene002481:CDS |
GGCTTGGAATTTAACAATTT+GGG | 0.228469 | 2.1:+70813871 | MS.gene002481:CDS |
AACGATCAAGCTTCTAATAT+TGG | 0.247824 | 2.1:+70814018 | MS.gene002481:CDS |
TGTATAACCATTATGATCAT+TGG | 0.338919 | 2.1:-70813686 | None:intergenic |
GGACAAGAGGTGGTACTCTT+AGG | 0.348242 | 2.1:+70813317 | MS.gene002481:CDS |
TCTAGAATCTCAACAAGTTC+AGG | 0.387293 | 2.1:+70813595 | MS.gene002481:CDS |
CATCATCAGCTATTGGTGTT+TGG | 0.393178 | 2.1:+70813995 | MS.gene002481:CDS |
GTGGTGTTTGGTTTGGAAGT+AGG | 0.405131 | 2.1:-70813466 | None:intergenic |
GATCATAATGGTTATACAAA+TGG | 0.418978 | 2.1:+70813691 | MS.gene002481:CDS |
ATTATGATCATTGGCTTCGC+TGG | 0.424556 | 2.1:-70813677 | None:intergenic |
CTTAGGAATGTTCCTGTTGG+TGG | 0.434008 | 2.1:+70813334 | MS.gene002481:CDS |
GAATTTGAAGAAGTGGTGTT+TGG | 0.444730 | 2.1:-70813478 | None:intergenic |
ACAGCATCATCATCAGCTAT+TGG | 0.454258 | 2.1:+70813988 | MS.gene002481:CDS |
TGAAGAAGTGGTGTTTGGTT+TGG | 0.459504 | 2.1:-70813473 | None:intergenic |
TTGGGGAATGGAAGTGAGAA+AGG | 0.465690 | 2.1:+70813889 | MS.gene002481:CDS |
AGAAGAATTAGTAGTATCAA+TGG | 0.471958 | 2.1:-70813422 | None:intergenic |
CTTCTGTAACCACCACCAAC+AGG | 0.474357 | 2.1:-70813346 | None:intergenic |
GAATTTAACAATTTGGGGAA+TGG | 0.481892 | 2.1:+70813877 | MS.gene002481:CDS |
TAAGGTTGAATTTGAAGAAG+TGG | 0.481982 | 2.1:-70813485 | None:intergenic |
CAACATAAATTCATGAATGA+TGG | 0.486443 | 2.1:+70813832 | MS.gene002481:CDS |
CAAGCTTTGCAGAAATGTCT+TGG | 0.496012 | 2.1:-70813283 | None:intergenic |
CAGCCTCAGATGAATACCAT+TGG | 0.500808 | 2.1:+70813628 | MS.gene002481:CDS |
AAAGGAATGAAGAAAGATGA+AGG | 0.500974 | 2.1:+70813907 | MS.gene002481:CDS |
GAAGAAAGATGAAGGAGAGA+TGG | 0.502257 | 2.1:+70813915 | MS.gene002481:CDS |
GGCATAACTGATGCATTACT+TGG | 0.503446 | 2.1:-70813784 | None:intergenic |
GAGATATTGAACCTTGAGAA+TGG | 0.505952 | 2.1:-70813574 | None:intergenic |
TTGGAAGTAGGAGTTGAAGA+AGG | 0.509651 | 2.1:-70813454 | None:intergenic |
AGGAATGTTCCTGTTGGTGG+TGG | 0.516563 | 2.1:+70813337 | MS.gene002481:CDS |
AGCGAAGCCAATGATCATAA+TGG | 0.521310 | 2.1:+70813679 | MS.gene002481:CDS |
ATGTGAATCTTCCATTCTCA+AGG | 0.533312 | 2.1:+70813563 | MS.gene002481:CDS |
CTTGATAAACCATAAAACAT+AGG | 0.540160 | 2.1:-70813523 | None:intergenic |
GGCTTCGCTGGACGTAAACC+CGG | 0.542853 | 2.1:-70813665 | None:intergenic |
GCTTGGAATTTAACAATTTG+GGG | 0.544684 | 2.1:+70813872 | MS.gene002481:CDS |
ATTAGTAGTATCAATGGTGG+AGG | 0.545112 | 2.1:-70813416 | None:intergenic |
AGAATTAGTAGTATCAATGG+TGG | 0.550623 | 2.1:-70813419 | None:intergenic |
CAGATGAATACCATTGGAGT+AGG | 0.575150 | 2.1:+70813634 | MS.gene002481:CDS |
GTAGGAGTTGAAGAAGGAGA+AGG | 0.577148 | 2.1:-70813448 | None:intergenic |
TGCAAACGTTATTGGACAAG+AGG | 0.578125 | 2.1:+70813304 | MS.gene002481:CDS |
ACTCTTAGGAATGTTCCTGT+TGG | 0.582456 | 2.1:+70813331 | MS.gene002481:CDS |
TTCCAGTAAAGTGAAGAAGC+TGG | 0.599918 | 2.1:-70813964 | None:intergenic |
TGAAGGAGAGATGGAACATG+TGG | 0.611078 | 2.1:+70813924 | MS.gene002481:CDS |
ACTCCAATGGTATTCATCTG+AGG | 0.617945 | 2.1:-70813631 | None:intergenic |
AGAGCAGAACTCAACAGAGA+AGG | 0.622062 | 2.1:-70813805 | None:intergenic |
GGATGAAAAGCCTACTCCAA+TGG | 0.628438 | 2.1:-70813644 | None:intergenic |
AAACGTTATTGGACAAGAGG+TGG | 0.639210 | 2.1:+70813307 | MS.gene002481:CDS |
CAGTAAAGTGAAGAAGCTGG+TGG | 0.648703 | 2.1:-70813961 | None:intergenic |
GAAGGAGAGATGGAACATGT+GGG | 0.678274 | 2.1:+70813925 | MS.gene002481:CDS |
TTAGTAGTATCAATGGTGGA+GGG | 0.679047 | 2.1:-70813415 | None:intergenic |
GGAGAGATGGAACATGTGGG+TGG | 0.710445 | 2.1:+70813928 | MS.gene002481:CDS |
GTGTTTGATGAGTCACAACG+TGG | 0.749573 | 2.1:-70813223 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGGACTAATATTATGATTTA+AGG | - | chr2.1:70813506-70813525 | None:intergenic | 20.0% |
!!! | AATATTAGTCCTATGTTTTA+TGG | + | chr2.1:70813514-70813533 | MS.gene002481:CDS | 20.0% |
! | AGAAGAATTAGTAGTATCAA+TGG | - | chr2.1:70813425-70813444 | None:intergenic | 25.0% |
! | CAACATAAATTCATGAATGA+TGG | + | chr2.1:70813832-70813851 | MS.gene002481:CDS | 25.0% |
! | CTTGATAAACCATAAAACAT+AGG | - | chr2.1:70813526-70813545 | None:intergenic | 25.0% |
! | GATCATAATGGTTATACAAA+TGG | + | chr2.1:70813691-70813710 | MS.gene002481:CDS | 25.0% |
! | TGTATAACCATTATGATCAT+TGG | - | chr2.1:70813689-70813708 | None:intergenic | 25.0% |
AAAGGAATGAAGAAAGATGA+AGG | + | chr2.1:70813907-70813926 | MS.gene002481:CDS | 30.0% | |
AACGATCAAGCTTCTAATAT+TGG | + | chr2.1:70814018-70814037 | MS.gene002481:CDS | 30.0% | |
AGAATTAGTAGTATCAATGG+TGG | - | chr2.1:70813422-70813441 | None:intergenic | 30.0% | |
GAATTTAACAATTTGGGGAA+TGG | + | chr2.1:70813877-70813896 | MS.gene002481:CDS | 30.0% | |
GCTTGGAATTTAACAATTTG+GGG | + | chr2.1:70813872-70813891 | MS.gene002481:CDS | 30.0% | |
GGCTTGGAATTTAACAATTT+GGG | + | chr2.1:70813871-70813890 | MS.gene002481:CDS | 30.0% | |
TAAGGTTGAATTTGAAGAAG+TGG | - | chr2.1:70813488-70813507 | None:intergenic | 30.0% | |
ATGTGAATCTTCCATTCTCA+AGG | + | chr2.1:70813563-70813582 | MS.gene002481:CDS | 35.0% | |
ATTAGTAGTATCAATGGTGG+AGG | - | chr2.1:70813419-70813438 | None:intergenic | 35.0% | |
GAATTTGAAGAAGTGGTGTT+TGG | - | chr2.1:70813481-70813500 | None:intergenic | 35.0% | |
GAGATATTGAACCTTGAGAA+TGG | - | chr2.1:70813577-70813596 | None:intergenic | 35.0% | |
GGGCTTGGAATTTAACAATT+TGG | + | chr2.1:70813870-70813889 | MS.gene002481:CDS | 35.0% | |
! | TCTAGAATCTCAACAAGTTC+AGG | + | chr2.1:70813595-70813614 | MS.gene002481:CDS | 35.0% |
! | TTAGTAGTATCAATGGTGGA+GGG | - | chr2.1:70813418-70813437 | None:intergenic | 35.0% |
AAACGTTATTGGACAAGAGG+TGG | + | chr2.1:70813307-70813326 | MS.gene002481:CDS | 40.0% | |
ACAGCATCATCATCAGCTAT+TGG | + | chr2.1:70813988-70814007 | MS.gene002481:CDS | 40.0% | |
ACTCCAATGGTATTCATCTG+AGG | - | chr2.1:70813634-70813653 | None:intergenic | 40.0% | |
ACTCTTAGGAATGTTCCTGT+TGG | + | chr2.1:70813331-70813350 | MS.gene002481:CDS | 40.0% | |
AGCGAAGCCAATGATCATAA+TGG | + | chr2.1:70813679-70813698 | MS.gene002481:CDS | 40.0% | |
CAAGCTTTGCAGAAATGTCT+TGG | - | chr2.1:70813286-70813305 | None:intergenic | 40.0% | |
CAGATGAATACCATTGGAGT+AGG | + | chr2.1:70813634-70813653 | MS.gene002481:CDS | 40.0% | |
GAAGAAAGATGAAGGAGAGA+TGG | + | chr2.1:70813915-70813934 | MS.gene002481:CDS | 40.0% | |
GCAAAGCTTGCAAACGTTAT+TGG | + | chr2.1:70813296-70813315 | MS.gene002481:CDS | 40.0% | |
GGCATAACTGATGCATTACT+TGG | - | chr2.1:70813787-70813806 | None:intergenic | 40.0% | |
TGAAGAAGTGGTGTTTGGTT+TGG | - | chr2.1:70813476-70813495 | None:intergenic | 40.0% | |
TGCAAACGTTATTGGACAAG+AGG | + | chr2.1:70813304-70813323 | MS.gene002481:CDS | 40.0% | |
TTCCAGTAAAGTGAAGAAGC+TGG | - | chr2.1:70813967-70813986 | None:intergenic | 40.0% | |
TTGGAAGTAGGAGTTGAAGA+AGG | - | chr2.1:70813457-70813476 | None:intergenic | 40.0% | |
! | ATTGGAGTAGGCTTTTCATC+CGG | + | chr2.1:70813646-70813665 | MS.gene002481:CDS | 40.0% |
! | CATCATCAGCTATTGGTGTT+TGG | + | chr2.1:70813995-70814014 | MS.gene002481:CDS | 40.0% |
! | GATGGTAGCAACACTTTTCA+GGG | + | chr2.1:70813850-70813869 | MS.gene002481:CDS | 40.0% |
! | TGATGGTAGCAACACTTTTC+AGG | + | chr2.1:70813849-70813868 | MS.gene002481:CDS | 40.0% |
!! | ATTATGATCATTGGCTTCGC+TGG | - | chr2.1:70813680-70813699 | None:intergenic | 40.0% |
AGAGCAGAACTCAACAGAGA+AGG | - | chr2.1:70813808-70813827 | None:intergenic | 45.0% | |
CACCAGCTTCTTCACTTTAC+TGG | + | chr2.1:70813962-70813981 | MS.gene002481:CDS | 45.0% | |
CAGCCTCAGATGAATACCAT+TGG | + | chr2.1:70813628-70813647 | MS.gene002481:CDS | 45.0% | |
CAGTAAAGTGAAGAAGCTGG+TGG | - | chr2.1:70813964-70813983 | None:intergenic | 45.0% | |
CTTAGGAATGTTCCTGTTGG+TGG | + | chr2.1:70813334-70813353 | MS.gene002481:CDS | 45.0% | |
GAAGGAGAGATGGAACATGT+GGG | + | chr2.1:70813925-70813944 | MS.gene002481:CDS | 45.0% | |
GGATGAAAAGCCTACTCCAA+TGG | - | chr2.1:70813647-70813666 | None:intergenic | 45.0% | |
GTAGGAGTTGAAGAAGGAGA+AGG | - | chr2.1:70813451-70813470 | None:intergenic | 45.0% | |
GTGTTTGATGAGTCACAACG+TGG | - | chr2.1:70813226-70813245 | None:intergenic | 45.0% | |
TGAAGGAGAGATGGAACATG+TGG | + | chr2.1:70813924-70813943 | MS.gene002481:CDS | 45.0% | |
TTGGGGAATGGAAGTGAGAA+AGG | + | chr2.1:70813889-70813908 | MS.gene002481:CDS | 45.0% | |
! | TTGGAGTAGGCTTTTCATCC+GGG | + | chr2.1:70813647-70813666 | MS.gene002481:CDS | 45.0% |
!! | GTGGTGTTTGGTTTGGAAGT+AGG | - | chr2.1:70813469-70813488 | None:intergenic | 45.0% |
!! | TAGCAACACTTTTCAGGGCT+TGG | + | chr2.1:70813855-70813874 | MS.gene002481:CDS | 45.0% |
CTTCTGTAACCACCACCAAC+AGG | - | chr2.1:70813349-70813368 | None:intergenic | 50.0% | |
GGACAAGAGGTGGTACTCTT+AGG | + | chr2.1:70813317-70813336 | MS.gene002481:CDS | 50.0% | |
! | AGGAATGTTCCTGTTGGTGG+TGG | + | chr2.1:70813337-70813356 | MS.gene002481:CDS | 50.0% |
GGAGAGATGGAACATGTGGG+TGG | + | chr2.1:70813928-70813947 | MS.gene002481:CDS | 55.0% | |
GGCTTCGCTGGACGTAAACC+CGG | - | chr2.1:70813668-70813687 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 70813166 | 70814065 | 70813166 | ID=MS.gene002481 |
chr2.1 | mRNA | 70813166 | 70814065 | 70813166 | ID=MS.gene002481.t1;Parent=MS.gene002481 |
chr2.1 | exon | 70813166 | 70814065 | 70813166 | ID=MS.gene002481.t1.exon1;Parent=MS.gene002481.t1 |
chr2.1 | CDS | 70813166 | 70814065 | 70813166 | ID=cds.MS.gene002481.t1;Parent=MS.gene002481.t1 |
Gene Sequence |
Protein sequence |