AlfalfaGEDB | MS.gene002487

M. sativa cultivar XinJiangDaYe / MS.gene002487

KEGG: -
GO: GO:0003674 GO:0005488 GO:0043167 GO:0043169 GO:0046872
PFAM: PF16131.8

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002487.t1	RHN71968.1	89.3	637	47	5	41	665	264	891	0.00E+00	1078.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002487.t1	Q84VG7	29.1	519	272	17	214	664	96	586	6.2e-35	150.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002487.t1	G7ISE1	89.3	637	47	5	41	665	265	892	0.0e+00	1078.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene002487.t1	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002487.t1	MTR_2g014260	93.072	664	25	5	14	665	237	891	0.0	1227
MS.gene002487.t1	MTR_2g014260	93.072	664	25	5	14	665	238	892	0.0	1225
MS.gene002487.t1	MTR_3g095960	45.455	88	48	0	574	661	902	989	6.32e-17	85.5
MS.gene002487.t1	MTR_3g095960	45.455	88	48	0	574	661	933	1020	6.99e-17	85.5
MS.gene002487.t1	MTR_8g093480	33.333	132	81	2	534	661	647	775	7.27e-15	79.0
MS.gene002487.t1	MTR_8g093480	33.333	132	81	2	534	661	604	732	8.66e-15	78.6
MS.gene002487.t1	MTR_8g093480	32.283	127	79	2	534	656	647	770	5.16e-13	72.8
MS.gene002487.t1	MTR_8g093480	32.283	127	79	2	534	656	604	727	6.52e-13	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002487.t1	AT2G33835	30.385	520	264	19	214	664	96	586	1.25e-43	166
MS.gene002487.t1	AT3G18640	44.578	83	46	0	579	661	590	672	2.14e-16	83.6
MS.gene002487.t1	AT3G18640	44.578	83	46	0	579	661	590	672	2.14e-16	83.6
MS.gene002487.t1	AT3G18640	44.578	83	46	0	579	661	590	672	2.14e-16	83.6
MS.gene002487.t1	AT3G26850	42.353	85	49	0	581	665	181	265	2.21e-16	80.1
MS.gene002487.t1	AT3G26850	42.353	85	49	0	581	665	181	265	2.21e-16	80.1
MS.gene002487.t1	AT2G10553	42.683	82	47	0	584	665	1	82	2.69e-15	72.0

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Find 130 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAAGTTTCCGATGA+GGG	0.572557	2.1:+70756608	MS.gene002487:CDS
AAAATTCTGGACATCTTCAG+AGG	0.589780	2.1:+70755741	MS.gene002487:CDS
AAAGCTTCCCTTCTAATTAG+AGG	0.355973	2.1:+70757047	MS.gene002487:CDS
AAATGTTGACAGGTCAAGAA+CGG	0.621080	2.1:+70756461	MS.gene002487:CDS
AACAGAAGTTCTGTTCCTCG+CGG	0.678826	2.1:+70757200	MS.gene002487:CDS
AACGGACTGAGCATGATGCT+AGG	0.615927	2.1:+70757345	MS.gene002487:CDS
AACGTTGATGTTGAAAATTC+TGG	0.195896	2.1:+70755728	MS.gene002487:CDS
AACTACCAAAATGGTGACAT+AGG	0.578382	2.1:+70757272	MS.gene002487:CDS
AACTTGATTTCTGCTGAAGA+TGG	0.439277	2.1:+70755689	MS.gene002487:CDS
AACTTGTGATGAAGCCTGAA+CGG	0.612804	2.1:-70757075	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAATAAAGGGGTTTGAA+GGG	-	chr2.1:70754509-70754528	None:intergenic	30.0%
AACGTTGATGTTGAAAATTC+TGG	+	chr2.1:70755728-70755747	MS.gene002487:CDS	30.0%
AGAGAATTGGAATTGGAAAA+AGG	+	chr2.1:70756347-70756366	MS.gene002487:CDS	30.0%
AGATACCAAATATTGGAGAT+GGG	+	chr2.1:70757018-70757037	MS.gene002487:CDS	30.0%
AGCTTCTTTATCTGATGTTA+AGG	+	chr2.1:70755805-70755824	MS.gene002487:CDS	30.0%
ATAAAAAAGGATGGTCGAAA+TGG	-	chr2.1:70756939-70756958	None:intergenic	30.0%
ATAATGATAGAGACTATGTG+TGG	-	chr2.1:70756113-70756132	None:intergenic	30.0%
ATTACTAAACATTGAGGGAT+TGG	-	chr2.1:70754982-70755001	None:intergenic	30.0%
CATTTCATACAGACAATAGA+CGG	-	chr2.1:70755392-70755411	None:intergenic	30.0%
CTTCTATGAAAAGCAGTAAA+TGG	-	chr2.1:70756501-70756520	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	70754256	70757841	70754256	ID=MS.gene002487
chr2.1	mRNA	70754256	70757841	70754256	ID=MS.gene002487.t1;Parent=MS.gene002487
chr2.1	exon	70754256	70754355	70754256	ID=MS.gene002487.t1.exon1;Parent=MS.gene002487.t1
chr2.1	CDS	70754256	70754355	70754256	ID=cds.MS.gene002487.t1;Parent=MS.gene002487.t1
chr2.1	exon	70755471	70755934	70755471	ID=MS.gene002487.t1.exon2;Parent=MS.gene002487.t1
chr2.1	CDS	70755471	70755934	70755471	ID=cds.MS.gene002487.t1;Parent=MS.gene002487.t1
chr2.1	exon	70755956	70755987	70755956	ID=MS.gene002487.t1.exon3;Parent=MS.gene002487.t1
chr2.1	CDS	70755956	70755987	70755956	ID=cds.MS.gene002487.t1;Parent=MS.gene002487.t1
chr2.1	exon	70756163	70756368	70756163	ID=MS.gene002487.t1.exon4;Parent=MS.gene002487.t1
chr2.1	CDS	70756163	70756368	70756163	ID=cds.MS.gene002487.t1;Parent=MS.gene002487.t1
chr2.1	exon	70756451	70756482	70756451	ID=MS.gene002487.t1.exon5;Parent=MS.gene002487.t1
chr2.1	CDS	70756451	70756482	70756451	ID=cds.MS.gene002487.t1;Parent=MS.gene002487.t1
chr2.1	exon	70756567	70757700	70756567	ID=MS.gene002487.t1.exon6;Parent=MS.gene002487.t1
chr2.1	CDS	70756567	70757700	70756567	ID=cds.MS.gene002487.t1;Parent=MS.gene002487.t1
chr2.1	exon	70757812	70757841	70757812	ID=MS.gene002487.t1.exon7;Parent=MS.gene002487.t1
chr2.1	CDS	70757812	70757841	70757812	ID=cds.MS.gene002487.t1;Parent=MS.gene002487.t1

Gene Sequence

>MS.gene002487

ATGGAAGTGGAGGAAGAACAAGAAACAGTTGTAGAGGAGAAAGATAAAGAGAAAAATGAGGTTCCAGATTCTCTGCCCGATGCAGATAAACGTAGCAAAGGTTTTCCAATTCATTAATGAATTATTAGTTATGCTTTTTATTCTTGATTTGATCCTTTACTGGCACATTTGTTTTCCTTAATAAATTACGTGACCTGGTTTTGACTCTCTATTGAGAGTCGCAACAGCTGCAACAGTTGCACCATGGTTTCCCTTCAAACCCCTTTATTTGTTCATAGTATTGAATATTGATAGGTATTGAATATATCCTGGTTATGCCTTTGGATCAGCATGTGTAGTTTCTCCCAATTGCTGCAACTCAACCCTTGAACCAGGAAAATTCAACCTTGTAGTGGCTCACAGAAAGGGAATGTAACTCTTTTGCAGCTCTTATAGAAGGGATTGAACCCAAAGAGTCTAAGAGGCTGCCAATGCCAAACTTCTGTATCGTCTGACTCCATAGATGTATCTAGCATTCAACTTTGTAAAGGAGGTGGAACAACCCTGCATTGAAGCTCAACCACATAGTTCTCATAATAAATGAAATCATAGATCATAAGACACGTATAAGTTCATCGTTGCAAGTTTGAAATGAACCTGATAGGTCAATGCGGTGAAAGAACCCAACTCTGACGAGTTGAAACCTAGCTTTATTCAGTTGAATCCAGCTCCAATGAGTGGAATCCAATCCCTCAATGTTTAGTAATTTTGAATGTTGTGATTGTCAATTGTTCATCAGTACTAAACTTGTCATACTCTTTTTACATGCTTAGTTGTGAACCTATCTTGTGCTTTATGATTTTTTCCATCATTTTTTAATTGTGATGTTGGTCTGGTCTGAATTTTATCACCGTGATTTACTTTATTACGAAGTTCGAATGTTGAATACTTGCTGCTAACATCATAAATCGTGTTTACATACTGTGATATGTGTTTTACACATCACTTTTTGTATTGAGTAAACTTGTAAACCCAAAAATTTATGAGTGAAGTCTATGGAGATTTTACGAGTTTACTTGGACTTTTGAGTTTGACAACTTTGTTTCTTTGAAACCAATATTTTTATAGTTTATCTTGTGAGAGGTAATCCACTTCCGTCTATTGTCTGTATGAAATGATTTAAAGAAGAGGATTCTTTTTCTAAATTCATAATTTATCTCTTATCTTCTATTGTAGATTCAAGCCAACATATGGAGCTTGATGTGAAAGAGGAGAACTTGGGGTCAGTTTCTTATGTGCCCGAGAACCCTGAAGTACGGCCATCACATTATATGGAAGAGAATGATACCATGAGCATGAGTAAAGCATCTGTTCCGTTGCATGAGGAATTGACATTGAAAAATGAAGATTATCCCCTGAAACAAAAAGTTTCTAGTCCTCCAAAACCAAGTGAAAACTTGATTTCTGCTGAAGATGGGAAAAATCAAGGCCTAAACGTTGATGTTGAAAATTCTGGACATCTTCAGAGGAAAACCACTGAAGGATGCAGTGAACCAGATTGCAATAGCAAAGCTTCTTTATCTGATGTTAAGGATGCCACCAAGTCATCTAGTGATACGGGAAAAGATGTGGTTACTGGAATCATACCGAGAGATAATTTTGTTGAGGATGCTGATGGTGGTCAGAACTCCAAGGAGAAAGTTATGCAATCAGAGATGGAGTCAAGGGTTGATGTGAAACAAAAGCCATCAAGGTCTGGTCATGGTAGTTCAGTATGTTCTTTTAAGTTTATTTACAAGATGACCAAAATTTAATTTACACTGCATGCTTTCTCTTTCAGAAGTAGCTTCTTGTCCTCTAACAACATAAATTAGTCCACACATAGTCTCTATCATTATGTTTTTCTGATTAACTCCTCCTGATAGCAGGACTAGAAGTCTGTCTCCCAGTGCCGAGATTAAAGATGGAAACAAAAGACCTGCAATTATATGTGCTTTTTTTGCTAAAGGTTGGTGCATCCGAGGTAGTTCTTGTAGCTTCCTTCATGTAAAAGATAGTGTGAATAATACTGACCAGGGGGATGAAGGAGACGTAGTTACTGCACATCAGAAGAGAGAATTGGAATTGGAAAAAGGTATATCAAATAATTTGTTTGGTCAACCTCTTCAGGTATCCCCTTTGTGCATATTTCTAATAAAGGCATTTCCCTGTAACAGGTGTTAAGGAAAATGTTGACAGGTCAAGAACGGTTAGTACTCCAGTTCCATTTACTGCTTTTCATAGAAGTATAACTTAACACTCTTCTGAATTTCCTTTGCAAATGAGCATGCAGAATGTGGAAGAAGCAAGTCCAAGTTGGCATCCATCTCATGAAAAAGAGAAGTTTCCGATGAGGGACAGCTTGTTTCCAGAGAATAAATCTGCATTTAATTCATCAAACAATTATTTCAGCTCAAATCTTTCCTCATATTCATCCCGTGCAGAGGAAATGATTGCTATTCGAAACCAACATATGTACAGAGGATATACATCGACAAAAGATTTTAGTTCACCTTTAGGTGCAAGTGCTTTGGACTCTTACGCCCATAAATCCTCTTTCTCTTCAGATCGGGAAGATTTTCATCTAGTTGGTTCATCTAGGGTTGCACCACATGCTAATGGATATACACTGAAAACCCGTTCTAATTGGGAACCTTCTGTTCCATTTCGACCATCCTTTTTTATCACTTCTATGAATGTATCATCCCCCAGAGATCTTTATGACCCTCTTCGTGATAGCATTGAGATACCAAATATTGGAGATGGGTCTCTGAAAGCTTCCCTTCTAATTAGAGGGTCATCCGTTCAGGCTTCATCACAAGTTCGAACATATGATGATTCTGCTGCAGTTGGGAAACACATGTCTGATGTTAATGATGATAAAAGTTCTGTATCTTCCCATCATAAGTTTTATGAAAATGAGCCAAACAGAAGTTCTGTTCCTCGCGGAAAAGATTGTCTTGCAACCAAAGCAGAGATAACATCAGGAAGTTGTGCAAACTACCAAAATGGTGACATAGGTGTGGGACAATATGCCTTTGGTGTTGAAGATAGGATAGAAACACTGAAAAAACGGACTGAGCATGATGCTAGGCATCATAGTGATGAATCAGAGCACAAAAAAAATAGAGTAGCAAAGGATAATAAATTTCATGAAATGGAGGTTGACTTTCAGACAGATGGCAGTGTACTCAAAGAAACAAAGACGCTGAAAATTTTCCATGCAGTCCTTGTTGATCTTGTGAAAGAGTTGCTAAAACCATTTTGGCATGAGGGTCGTCTCAGCAAGGATGCACATATATTGATAGTTAAAAAATCAGTTGACAAGGTTATTAGCACTTTAGAGCCACGTCAAATTCCGACCACTGAAGATACTGCTAAGCAATATGTTTCTTTATGTCGGCCAAAAATTGCAAAGTTAGTCCATGTAAGTGTCCTTTTTTTGCACAGTTTTTGTTATTTGTCAATGGAAGTACATGGACTTTCTTGTTTGTCCTCCGTTTGATTTGACAGAATAGATATATATTTTTGTGTGCAGGGATATGTCAATAAACATGGCAAATCTTGA

Protein sequence

>MS.gene002487.t1

MEVEEEQETVVEEKDKEKNEVPDSLPDADKRSKDSSQHMELDVKEENLGSVSYVPENPEVRPSHYMEENDTMSMSKASVPLHEELTLKNEDYPLKQKVSSPPKPSENLISAEDGKNQGLNVDVENSGHLQRKTTEGCSEPDCNSKASLSDVKDATKSSSDTGKDVVTGIIPRDNFVEDADGGQNSKEKSRVDVKQKPSRTRSLSPSAEIKDGNKRPAIICAFFAKGWCIRGSSCSFLHVKDSVNNTDQGDEGDVVTAHQKRELELEKGVKENVDRSRTNVEEASPSWHPSHEKEKFPMRDSLFPENKSAFNSSNNYFSSNLSSYSSRAEEMIAIRNQHMYRGYTSTKDFSSPLGASALDSYAHKSSFSSDREDFHLVGSSRVAPHANGYTLKTRSNWEPSVPFRPSFFITSMNVSSPRDLYDPLRDSIEIPNIGDGSLKASLLIRGSSVQASSQVRTYDDSAAVGKHMSDVNDDKSSVSSHHKFYENEPNRSSVPRGKDCLATKAEITSGSCANYQNGDIGVGQYAFGVEDRIETLKKRTEHDARHHSDESEHKKNRVAKDNKFHEMEVDFQTDGSVLKETKTLKIFHAVLVDLVKELLKPFWHEGRLSKDAHILIVKKSVDKVISTLEPRQIPTTEDTAKQYVSLCRPKIAKLVHGYVNKHGKS