AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002496

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002496.t1 MTR_7g039520 88.034 351 36 2 1 350 1 346 0.0 631
MS.gene002496.t1 MTR_5g040080 88.319 351 35 2 1 350 1 346 0.0 621
MS.gene002496.t1 MTR_2g014410 85.375 253 18 1 96 348 42 275 1.00e-145 415
MS.gene002496.t1 MTR_1g069015 33.803 142 80 6 1 132 1 138 3.45e-16 79.7
MS.gene002496.t1 MTR_1g069020 35.294 119 63 4 22 134 28 138 1.12e-14 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002496.t1 AT1G58210 38.053 113 63 3 22 132 64 171 9.56e-18 82.8

Find 72 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACTTTACGTAAAGAAAT+TGG 0.221596 2.1:+70628400 MS.gene002496:CDS
CCTTGTGGTCACTTGATAAT+TGG 0.239096 2.1:-70628430 None:intergenic
GTGTGGTGGTGGAACGTATT+GGG 0.250160 2.1:-70626630 None:intergenic
GGTGGAACGTATTGGGGTTT+TGG 0.271264 2.1:-70626623 None:intergenic
TCCAATTTCTTTACGTAAAG+TGG 0.301497 2.1:-70628401 None:intergenic
GTGATTTATAATGGTGAAAA+TGG 0.304153 2.1:+70628077 MS.gene002496:CDS
CAGTTGGATTTCCACACAAT+TGG 0.315477 2.1:+70627883 MS.gene002496:CDS
GCCTCACATACATATCAAAA+TGG 0.335718 2.1:+70627044 MS.gene002496:CDS
GTGATTTCTAATGGTGAAAA+TGG 0.338731 2.1:+70628287 MS.gene002496:CDS
GTTGGAGAGGGGTGTGGTGG+TGG 0.351038 2.1:-70626641 None:intergenic
TGTGGTGGTGGAACGTATTG+GGG 0.352785 2.1:-70626629 None:intergenic
CAAGTTGGCGTGATTTATAA+TGG 0.357302 2.1:+70628068 MS.gene002496:CDS
TGCAAGGGTTTAGCTCTTGC+TGG 0.372413 2.1:+70626819 MS.gene002496:CDS
GGTGTGGTGGTGGAACGTAT+TGG 0.373524 2.1:-70626631 None:intergenic
AATTATTCAGCTCATAGTTC+AGG 0.376079 2.1:+70627909 MS.gene002496:CDS
GCTAAACCCTTGCATTGGTT+TGG 0.379957 2.1:-70626810 None:intergenic
AGCAGCTGATGAAACTTTGC+AGG 0.381501 2.1:+70628142 MS.gene002496:CDS
AAGTCACATGATGCTTATAA+AGG 0.387819 2.1:+70628535 MS.gene002496:CDS
TGAAACTTTGCAGGAAGATA+TGG 0.392140 2.1:+70628151 MS.gene002496:CDS
TCTTGCTGGCATTGCTTCAA+TGG 0.402134 2.1:+70626833 MS.gene002496:CDS
ATACCGGTAACTTGTGTAGT+AGG 0.407561 2.1:+70628486 MS.gene002496:CDS
ACAACAATATTGCGAGTCTA+AGG 0.409478 2.1:+70628033 MS.gene002496:CDS
CAGGTTGCCGTGATTTCTAA+TGG 0.414513 2.1:+70628278 MS.gene002496:CDS
CACCCTACTACACAAGTTAC+CGG 0.426920 2.1:-70628489 None:intergenic
GGGTCTTAAGTTGTCTCAAC+AGG 0.433791 2.1:+70628199 MS.gene002496:CDS
TTTGAAGATTGAGTTGGAGA+GGG 0.438182 2.1:-70626653 None:intergenic
CCCATGAGCCAGACAGTGTT+AGG 0.438258 2.1:+70628375 MS.gene002496:CDS
GAACACGTGGATAAAGTTAC+TGG 0.442596 2.1:+70627942 MS.gene002496:CDS
AAACCCTTGCATTGGTTTGG+AGG 0.442882 2.1:-70626807 None:intergenic
ATCTTGAGTCTCTACAACAT+TGG 0.448912 2.1:-70626988 None:intergenic
GCAATGTTGTCATTACCTTC+AGG 0.449864 2.1:-70628176 None:intergenic
GAAGGTAATGACAACATTGC+GGG 0.450334 2.1:+70628179 MS.gene002496:CDS
GTTGTCTCAACAGGAAGATA+TGG 0.457391 2.1:+70628208 MS.gene002496:CDS
ACCCTGGTAGATCTTCTAAC+AGG 0.457573 2.1:-70628590 None:intergenic
CACATGATGCTTATAAAGGA+TGG 0.459002 2.1:+70628539 MS.gene002496:CDS
TTTAGATTTGAAGATTGAGT+TGG 0.459049 2.1:-70626659 None:intergenic
TCTTGAGTCTCTACAACATT+GGG 0.460912 2.1:-70626987 None:intergenic
GCAATGTTGTCATTACCTTC+CGG 0.481010 2.1:-70628233 None:intergenic
CTCCTGTTAGAAGATCTACC+AGG 0.486292 2.1:+70628588 MS.gene002496:CDS
TGAGTTGGAGAGGGGTGTGG+TGG 0.489080 2.1:-70626644 None:intergenic
ACCTAACACTGTCTGGCTCA+TGG 0.494226 2.1:-70628376 None:intergenic
ATTTGAAGATTGAGTTGGAG+AGG 0.496033 2.1:-70626654 None:intergenic
TTATGTCGCCGTTTCTCAGT+TGG 0.496930 2.1:+70627867 MS.gene002496:CDS
AGTGGAGACCTAACACTGTC+TGG 0.502098 2.1:-70628383 None:intergenic
TGATACATTTCTTATCCTTG+TGG 0.504839 2.1:-70628445 None:intergenic
GATTGAGTTGGAGAGGGGTG+TGG 0.509260 2.1:-70626647 None:intergenic
TTGAAGATTGAGTTGGAGAG+GGG 0.510736 2.1:-70626652 None:intergenic
CCTAACACTGTCTGGCTCAT+GGG 0.522687 2.1:-70628375 None:intergenic
TCTTGATTTGTCTCAACCGC+AGG 0.523290 2.1:+70628259 MS.gene002496:CDS
CAAGAGCTAAACCCTTGCAT+TGG 0.528805 2.1:-70626815 None:intergenic
TCAACAGGAAGATATGGAAC+CGG 0.540435 2.1:+70628214 MS.gene002496:CDS
AAGAAGAATGTAGATGATAC+CGG 0.549093 2.1:+70628470 MS.gene002496:CDS
GTGGAAATCCAACTGAGAAA+CGG 0.556021 2.1:-70627875 None:intergenic
ACATGATGCTTATAAAGGAT+GGG 0.566978 2.1:+70628540 MS.gene002496:CDS
TTATAAATCACGCCAACTTG+AGG 0.591187 2.1:-70628065 None:intergenic
TACCGGTAACTTGTGTAGTA+GGG 0.605302 2.1:+70628487 MS.gene002496:CDS
GAAACCTCCAAACCAATGCA+AGG 0.605866 2.1:+70626803 MS.gene002496:CDS
ACACTGTCTGGCTCATGGGT+AGG 0.608929 2.1:-70628371 None:intergenic
CCAATTATCAAGTGACCACA+AGG 0.618748 2.1:+70628430 MS.gene002496:CDS
CAGGAAGATATGGAACCTGA+AGG 0.622434 2.1:+70628161 MS.gene002496:CDS
AAACCTCCAAACCAATGCAA+GGG 0.637222 2.1:+70626804 MS.gene002496:CDS
AGGTTGTCTCAACCTCAAGT+TGG 0.639538 2.1:+70628053 MS.gene002496:CDS
GTTACCTTCAGCTTCCTGTG+AGG 0.642766 2.1:-70628012 None:intergenic
GAGACCTCACAGGAAGCTGA+AGG 0.643008 2.1:+70628008 MS.gene002496:CDS
AACAGCTGATGAGACCTCAC+AGG 0.646895 2.1:+70627998 MS.gene002496:CDS
AATGTTGTAGAGACTCAAGA+TGG 0.656225 2.1:+70626990 MS.gene002496:CDS
CAGGAAGATATGGAACCGGA+AGG 0.662654 2.1:+70628218 MS.gene002496:CDS
AGGAAATGAATGTGAACACG+TGG 0.663886 2.1:+70627929 MS.gene002496:CDS
TCCTGTTAGAAGATCTACCA+GGG 0.668456 2.1:+70628589 MS.gene002496:CDS
TTAGAAATCACGGCAACCTG+CGG 0.679371 2.1:-70628275 None:intergenic
TGAAGGTAATGACAACATTG+CGG 0.680073 2.1:+70628178 MS.gene002496:CDS
GTGAGGCGTTAATCAAACCG+TGG 0.701937 2.1:-70627028 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGAGTAAAAATCAAATT+TGG + chr2.1:70627194-70627213 MS.gene002496:intron 15.0%
!!! GTTTATATTCATTTTAATAG+AGG - chr2.1:70627300-70627319 None:intergenic 15.0%
!!! TTTTTTCATTTTCATTTTGT+AGG + chr2.1:70626862-70626881 MS.gene002496:intron 15.0%
!! AAAATACACATAATCTTCAA+TGG + chr2.1:70627763-70627782 MS.gene002496:intron 20.0%
!! TTCTAATTGGTTATTTGTTT+GGG + chr2.1:70626886-70626905 MS.gene002496:intron 20.0%
!! TTTCTAATTGGTTATTTGTT+TGG + chr2.1:70626885-70626904 MS.gene002496:intron 20.0%
!!! TTTTTGCATCAAATTTTCTT+TGG - chr2.1:70627400-70627419 None:intergenic 20.0%
!!! TTTTTTATAATTTAGTACCC+TGG - chr2.1:70628609-70628628 None:intergenic 20.0%
! AAATTAAATGCGTCAATAAC+AGG - chr2.1:70627819-70627838 None:intergenic 25.0%
! ATTGAGGTTTATCAATCATT+CGG + chr2.1:70627586-70627605 MS.gene002496:intron 25.0%
! GACAAAGTTAGCAAAAATAT+AGG - chr2.1:70627635-70627654 None:intergenic 25.0%
! GTGATTTATAATGGTGAAAA+TGG + chr2.1:70628077-70628096 MS.gene002496:CDS 25.0%
! TGATTGATAAACCTCAATTA+TGG - chr2.1:70627584-70627603 None:intergenic 25.0%
! TTTAGATTTGAAGATTGAGT+TGG - chr2.1:70626662-70626681 None:intergenic 25.0%
!! AACCCAAAATCTATACTTTT+TGG + chr2.1:70627716-70627735 MS.gene002496:intron 25.0%
!! ATTTTCACCATTAGAAATCA+CGG - chr2.1:70628288-70628307 None:intergenic 25.0%
!! GAATAATTTTTCCAATTGTG+TGG - chr2.1:70627897-70627916 None:intergenic 25.0%
!! TCATTTTGTAGGTTTCTAAT+TGG + chr2.1:70626873-70626892 MS.gene002496:intron 25.0%
!!! TATTGACGCATTTAATTTTC+TGG + chr2.1:70627821-70627840 MS.gene002496:intron 25.0%
!!! TGCCAAAAAGTATAGATTTT+GGG - chr2.1:70627721-70627740 None:intergenic 25.0%
!!! TTGCCAAAAAGTATAGATTT+TGG - chr2.1:70627722-70627741 None:intergenic 25.0%
AAGAAGAATGTAGATGATAC+CGG + chr2.1:70628470-70628489 MS.gene002496:CDS 30.0%
AAGCAAACACACACTTAAAA+AGG - chr2.1:70627470-70627489 None:intergenic 30.0%
AAGTCACATGATGCTTATAA+AGG + chr2.1:70628535-70628554 MS.gene002496:CDS 30.0%
AATTATTCAGCTCATAGTTC+AGG + chr2.1:70627909-70627928 MS.gene002496:CDS 30.0%
ACATGATGCTTATAAAGGAT+GGG + chr2.1:70628540-70628559 MS.gene002496:CDS 30.0%
ATCTGCAAAAATAAGCAAGT+AGG - chr2.1:70626759-70626778 None:intergenic 30.0%
CACAGAAATGAGAAAGAAAA+AGG - chr2.1:70627092-70627111 None:intergenic 30.0%
GTGATTTCTAATGGTGAAAA+TGG + chr2.1:70628287-70628306 MS.gene002496:CDS 30.0%
TCCAATTTCTTTACGTAAAG+TGG - chr2.1:70628404-70628423 None:intergenic 30.0%
TCCACTTTACGTAAAGAAAT+TGG + chr2.1:70628400-70628419 MS.gene002496:CDS 30.0%
TGATACATTTCTTATCCTTG+TGG - chr2.1:70628448-70628467 None:intergenic 30.0%
! AGATTTTCTTACATGAATGG+TGG + chr2.1:70626775-70626794 MS.gene002496:intron 30.0%
! TCAAAATGGTTTTTCTTCTG+AGG + chr2.1:70627058-70627077 MS.gene002496:CDS 30.0%
! TGCAGATTTTCTTACATGAA+TGG + chr2.1:70626772-70626791 MS.gene002496:intron 30.0%
!! ACCATTTTGATATGTATGTG+AGG - chr2.1:70627048-70627067 None:intergenic 30.0%
AAACAAGAGAGAAGAGTGAA+TGG - chr2.1:70626695-70626714 None:intergenic 35.0%
AACAAGAGAGAAGAGTGAAT+GGG - chr2.1:70626694-70626713 None:intergenic 35.0%
AATGTTGTAGAGACTCAAGA+TGG + chr2.1:70626990-70627009 MS.gene002496:CDS 35.0%
ACAACAATATTGCGAGTCTA+AGG + chr2.1:70628033-70628052 MS.gene002496:CDS 35.0%
ATCTTGAGTCTCTACAACAT+TGG - chr2.1:70626991-70627010 None:intergenic 35.0%
CACATGATGCTTATAAAGGA+TGG + chr2.1:70628539-70628558 MS.gene002496:CDS 35.0%
GCCTCACATACATATCAAAA+TGG + chr2.1:70627044-70627063 MS.gene002496:CDS 35.0%
TACAAATTTCAGCTTCGAGT+TGG + chr2.1:70627227-70627246 MS.gene002496:intron 35.0%
TCAGTGTGTTAGAACTTTGA+AGG - chr2.1:70627550-70627569 None:intergenic 35.0%
TCTTGAGTCTCTACAACATT+GGG - chr2.1:70626990-70627009 None:intergenic 35.0%
TGAAACTTTGCAGGAAGATA+TGG + chr2.1:70628151-70628170 MS.gene002496:CDS 35.0%
TGAAGGTAATGACAACATTG+CGG + chr2.1:70628178-70628197 MS.gene002496:CDS 35.0%
TGTGTTTGCTTCATGTTCAA+GGG + chr2.1:70627479-70627498 MS.gene002496:intron 35.0%
TTATAAATCACGCCAACTTG+AGG - chr2.1:70628068-70628087 None:intergenic 35.0%
! AACCTCAATTATGGTTTGTG+TGG - chr2.1:70627575-70627594 None:intergenic 35.0%
! AAGCATCATGTGACTTTTCT+TGG - chr2.1:70628531-70628550 None:intergenic 35.0%
! CAAACATGAGATTTAGAGTC+TGG + chr2.1:70627676-70627695 MS.gene002496:intron 35.0%
! CAAGTTGGCGTGATTTATAA+TGG + chr2.1:70628068-70628087 MS.gene002496:CDS 35.0%
!! ATTTGAAGATTGAGTTGGAG+AGG - chr2.1:70626657-70626676 None:intergenic 35.0%
!! TAGTGTCTGGAATCACTTTT+AGG + chr2.1:70627274-70627293 MS.gene002496:intron 35.0%
!! TTTGAAGATTGAGTTGGAGA+GGG - chr2.1:70626656-70626675 None:intergenic 35.0%
!!! AATGGTTTTTCTTCTGAGGT+AGG + chr2.1:70627062-70627081 MS.gene002496:intron 35.0%
!!! CTCATCAGCTGTTTTTTTGT+GGG - chr2.1:70627991-70628010 None:intergenic 35.0%
!!! TCTCATCAGCTGTTTTTTTG+TGG - chr2.1:70627992-70628011 None:intergenic 35.0%
!!! TTCATCAGCTGCTTTTTTGT+GGG - chr2.1:70628135-70628154 None:intergenic 35.0%
!!! TTTCATCAGCTGCTTTTTTG+TGG - chr2.1:70628136-70628155 None:intergenic 35.0%
AAACCTCCAAACCAATGCAA+GGG + chr2.1:70626804-70626823 MS.gene002496:CDS 40.0%
AGGAAATGAATGTGAACACG+TGG + chr2.1:70627929-70627948 MS.gene002496:CDS 40.0%
CAGTTGGATTTCCACACAAT+TGG + chr2.1:70627883-70627902 MS.gene002496:CDS 40.0%
CCAATTATCAAGTGACCACA+AGG + chr2.1:70628430-70628449 MS.gene002496:CDS 40.0%
CTCCACACAAACCATAATTG+AGG + chr2.1:70627570-70627589 MS.gene002496:intron 40.0%
GAACACGTGGATAAAGTTAC+TGG + chr2.1:70627942-70627961 MS.gene002496:CDS 40.0%
GAAGGTAATGACAACATTGC+GGG + chr2.1:70628179-70628198 MS.gene002496:CDS 40.0%
GACATGTCAACATTAGTGTC+TGG + chr2.1:70627261-70627280 MS.gene002496:intron 40.0%
GCAATGTTGTCATTACCTTC+AGG - chr2.1:70628179-70628198 None:intergenic 40.0%
GCAATGTTGTCATTACCTTC+CGG - chr2.1:70628179-70628198 None:intergenic 40.0%
GTGGAAATCCAACTGAGAAA+CGG - chr2.1:70627878-70627897 None:intergenic 40.0%
GTGTGTTTGCTTCATGTTCA+AGG + chr2.1:70627478-70627497 MS.gene002496:intron 40.0%
GTTGTCTCAACAGGAAGATA+TGG + chr2.1:70628208-70628227 MS.gene002496:CDS 40.0%
TCAACAGGAAGATATGGAAC+CGG + chr2.1:70628214-70628233 MS.gene002496:CDS 40.0%
TCCTGTTAGAAGATCTACCA+GGG + chr2.1:70628589-70628608 MS.gene002496:CDS 40.0%
TTGTGACTATTGATGCATGC+AGG + chr2.1:70626919-70626938 MS.gene002496:intron 40.0%
! ATACCGGTAACTTGTGTAGT+AGG + chr2.1:70628486-70628505 MS.gene002496:CDS 40.0%
! CCTTGTGGTCACTTGATAAT+TGG - chr2.1:70628433-70628452 None:intergenic 40.0%
! GAACTTTGAAGGCTATCACT+TGG - chr2.1:70627539-70627558 None:intergenic 40.0%
! GGCATCACTGTAATTTTCCA+CGG + chr2.1:70627011-70627030 MS.gene002496:CDS 40.0%
! TACCGGTAACTTGTGTAGTA+GGG + chr2.1:70628487-70628506 MS.gene002496:CDS 40.0%
!! TTGAAGATTGAGTTGGAGAG+GGG - chr2.1:70626655-70626674 None:intergenic 40.0%
ACCCTGGTAGATCTTCTAAC+AGG - chr2.1:70628593-70628612 None:intergenic 45.0%
AGCAGCTGATGAAACTTTGC+AGG + chr2.1:70628142-70628161 MS.gene002496:CDS 45.0%
AGGTTGTCTCAACCTCAAGT+TGG + chr2.1:70628053-70628072 MS.gene002496:CDS 45.0%
CAAGAGCTAAACCCTTGCAT+TGG - chr2.1:70626818-70626837 None:intergenic 45.0%
CACCCTACTACACAAGTTAC+CGG - chr2.1:70628492-70628511 None:intergenic 45.0%
CAGGAAGATATGGAACCTGA+AGG + chr2.1:70628161-70628180 MS.gene002496:CDS 45.0%
CAGGTTGCCGTGATTTCTAA+TGG + chr2.1:70628278-70628297 MS.gene002496:CDS 45.0%
CTCCTGTTAGAAGATCTACC+AGG + chr2.1:70628588-70628607 MS.gene002496:CDS 45.0%
GAAACCTCCAAACCAATGCA+AGG + chr2.1:70626803-70626822 MS.gene002496:CDS 45.0%
TCTTGCTGGCATTGCTTCAA+TGG + chr2.1:70626833-70626852 MS.gene002496:CDS 45.0%
TTAGAAATCACGGCAACCTG+CGG - chr2.1:70628278-70628297 None:intergenic 45.0%
TTATGTCGCCGTTTCTCAGT+TGG + chr2.1:70627867-70627886 MS.gene002496:CDS 45.0%
! GGGTCTTAAGTTGTCTCAAC+AGG + chr2.1:70628199-70628218 MS.gene002496:CDS 45.0%
! GTCTGGCAATTTTGTCTGAC+AGG + chr2.1:70627693-70627712 MS.gene002496:intron 45.0%
!! AAACCCTTGCATTGGTTTGG+AGG - chr2.1:70626810-70626829 None:intergenic 45.0%
!! GCTAAACCCTTGCATTGGTT+TGG - chr2.1:70626813-70626832 None:intergenic 45.0%
!! TCTTGATTTGTCTCAACCGC+AGG + chr2.1:70628259-70628278 MS.gene002496:CDS 45.0%
!!! TAAATTTTTAGAATTAATTT+TGG + chr2.1:70627327-70627346 MS.gene002496:intron 5.0%
AACAGCTGATGAGACCTCAC+AGG + chr2.1:70627998-70628017 MS.gene002496:CDS 50.0%
AACAGGCACGATCACACACA+GGG - chr2.1:70627802-70627821 None:intergenic 50.0%
AGGCTATCACTTGGAGCTTC+AGG - chr2.1:70627530-70627549 None:intergenic 50.0%
AGTGGAGACCTAACACTGTC+TGG - chr2.1:70628386-70628405 None:intergenic 50.0%
CAGGAAGATATGGAACCGGA+AGG + chr2.1:70628218-70628237 MS.gene002496:CDS 50.0%
GTTACCTTCAGCTTCCTGTG+AGG - chr2.1:70628015-70628034 None:intergenic 50.0%
GTTCAAGGGTCATCCACAGT+GGG + chr2.1:70627493-70627512 MS.gene002496:intron 50.0%
TAACAGGCACGATCACACAC+AGG - chr2.1:70627803-70627822 None:intergenic 50.0%
TGTTCAAGGGTCATCCACAG+TGG + chr2.1:70627492-70627511 MS.gene002496:intron 50.0%
! ACCTAACACTGTCTGGCTCA+TGG - chr2.1:70628379-70628398 None:intergenic 50.0%
! CCTAACACTGTCTGGCTCAT+GGG - chr2.1:70628378-70628397 None:intergenic 50.0%
! GGTGGAACGTATTGGGGTTT+TGG - chr2.1:70626626-70626645 None:intergenic 50.0%
! GGTTCAAGTTCAACCCACTG+TGG - chr2.1:70627509-70627528 None:intergenic 50.0%
! GTGAGGCGTTAATCAAACCG+TGG - chr2.1:70627031-70627050 None:intergenic 50.0%
!! GTGTGGTGGTGGAACGTATT+GGG - chr2.1:70626633-70626652 None:intergenic 50.0%
!! TGCAAGGGTTTAGCTCTTGC+TGG + chr2.1:70626819-70626838 MS.gene002496:CDS 50.0%
!! TGTGGTGGTGGAACGTATTG+GGG - chr2.1:70626632-70626651 None:intergenic 50.0%
ACAGGCACGATCACACACAG+GGG - chr2.1:70627801-70627820 None:intergenic 55.0%
CCCATGAGCCAGACAGTGTT+AGG + chr2.1:70628375-70628394 MS.gene002496:CDS 55.0%
GAGACCTCACAGGAAGCTGA+AGG + chr2.1:70628008-70628027 MS.gene002496:CDS 55.0%
! ACACTGTCTGGCTCATGGGT+AGG - chr2.1:70628374-70628393 None:intergenic 55.0%
!! GATTGAGTTGGAGAGGGGTG+TGG - chr2.1:70626650-70626669 None:intergenic 55.0%
!! GGTGTGGTGGTGGAACGTAT+TGG - chr2.1:70626634-70626653 None:intergenic 55.0%
! TGAGTTGGAGAGGGGTGTGG+TGG - chr2.1:70626647-70626666 None:intergenic 60.0%
! GTTGGAGAGGGGTGTGGTGG+TGG - chr2.1:70626644-70626663 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 70626616 70628631 70626616 ID=MS.gene002496
chr2.1 mRNA 70626616 70628631 70626616 ID=MS.gene002496.t1;Parent=MS.gene002496
chr2.1 exon 70626616 70626684 70626616 ID=MS.gene002496.t1.exon1;Parent=MS.gene002496.t1
chr2.1 CDS 70626616 70626684 70626616 ID=cds.MS.gene002496.t1;Parent=MS.gene002496.t1
chr2.1 exon 70626777 70626856 70626777 ID=MS.gene002496.t1.exon2;Parent=MS.gene002496.t1
chr2.1 CDS 70626777 70626856 70626777 ID=cds.MS.gene002496.t1;Parent=MS.gene002496.t1
chr2.1 exon 70626941 70627079 70626941 ID=MS.gene002496.t1.exon3;Parent=MS.gene002496.t1
chr2.1 CDS 70626941 70627079 70626941 ID=cds.MS.gene002496.t1;Parent=MS.gene002496.t1
chr2.1 exon 70627867 70628631 70627867 ID=MS.gene002496.t1.exon4;Parent=MS.gene002496.t1
chr2.1 CDS 70627867 70628631 70627867 ID=cds.MS.gene002496.t1;Parent=MS.gene002496.t1
Gene Sequence

>MS.gene002496

ATGGCTTCCAAAACCCCAATACGTTCCACCACCACACCCCTCTCCAACTCAATCTTCAAATCTAAACACGTATTTCCCATTCACTCTTCTCTCTTGTTTCTTTTTCTTCACGAAATTATTCACAGTTACATATTCATGAACCTACTTGCTTATTTTTGCAGATTTTCTTACATGAATGGTGGCTTGTGAAACCTCCAAACCAATGCAAGGGTTTAGCTCTTGCTGGCATTGCTTCAATGGAGTAATTTTTTTCATTTTCATTTTGTAGGTTTCTAATTGGTTATTTGTTTGGGTAATTACTTATTGTGACTATTGATGCATGCAGGAGAGAAAGAATGTTTTTTTCTTCATTAATTGTAGAGAGACATGAACCCAATGTTGTAGAGACTCAAGATGGCATCACTGTAATTTTCCACGGTTTGATTAACGCCTCACATACATATCAAAATGGTTTTTCTTCTGAGGTAGGTTATCCTTTTTCTTTCTCATTTCTGTGAAATTGATTTTTGATTAAAATTGAGTTGTATGTAAAACGTTGTCTGTTTTAATACATTCAAGCAAAACTGAATTGAATAATAATTTGAGTAAAAATCAAATTTGGACACATAAGCTACAAATTTCAGCTTCGAGTTGGCATTCATTTTTGACATGTCAACATTAGTGTCTGGAATCACTTTTAGGCCTCTATTAAAATGAATATAAACACACACTTAAATTTTTAGAATTAATTTTGGTTTAATTGAGTTTAAATAATTTCATTCATGTTCACATGTTTTTACTTCCAAAGAAAATTTGATGCAAAAAGTAGTGTTAAATTTTTAATTCTACACAAAATTTGCTGTTTATCAATACCTTTTTAAGTGTGTGTTTGCTTCATGTTCAAGGGTCATCCACAGTGGGTTGAACTTGAACCTGAAGCTCCAAGTGATAGCCTTCAAAGTTCTAACACACTGACTCCACACAAACCATAATTGAGGTTTATCAATCATTCGGTTTTATTTTGTAGAAATCAAACTCCTATATTTTTGCTAACTTTGTCATGTGAAACTAGACACACGCACAAACATGAGATTTAGAGTCTGGCAATTTTGTCTGACAGGAACCCAAAATCTATACTTTTTGGCAAAATCAATTTTGTTAGTGAAACAAAATACACATAATCTTCAATGGATTGAATAAATACCCCTGTGTGTGATCGTGCCTGTTATTGACGCATTTAATTTTCTGGAAATATTCAATGTCTTTCAACAGTTATGTCGCCGTTTCTCAGTTGGATTTCCACACAATTGGAAAAATTATTCAGCTCATAGTTCAGGAAATGAATGTGAACACGTGGATAAAGTTACTGGTTTTGACGACTCAAATACTTCTTCCCACAAAAAAACAGCTGATGAGACCTCACAGGAAGCTGAAGGTAACAACAATATTGCGAGTCTAAGGTTGTCTCAACCTCAAGTTGGCGTGATTTATAATGGTGAAAATGGATTCTCAAATGTTGACAACTCAAATGCTTCATCCCACAAAAAAGCAGCTGATGAAACTTTGCAGGAAGATATGGAACCTGAAGGTAATGACAACATTGCGGGTCTTAAGTTGTCTCAACAGGAAGATATGGAACCGGAAGGTAATGACAACATTGCGAGTCTTGATTTGTCTCAACCGCAGGTTGCCGTGATTTCTAATGGTGAAAATGGAGTCTCAAATGTTGCTGCAGCTGAAAATAGTCAATCTTTGATGAGTGTATTTGAATTTGATCCTACCCATGAGCCAGACAGTGTTAGGTCTCCACTTTACGTAAAGAAATTGGAGTTTGACCAATTATCAAGTGACCACAAGGATAAGAAATGTATCAAGAAGAAGAATGTAGATGATACCGGTAACTTGTGTAGTAGGGTGCTAACAAGAAGCATTGCCAAGAAAAGTCACATGATGCTTATAAAGGATGGGAAAGCTGAAGTAAAATGTTTCACTTCTCCTGTTAGAAGATCTACCAGGGTACTAAATTATAAAAAATGA
Protein sequence

>MS.gene002496.t1

MASKTPIRSTTTPLSNSIFKSKHIFLHEWWLVKPPNQCKGLALAGIASMERERMFFSSLIVERHEPNVVETQDGITVIFHGLINASHTYQNGFSSELCRRFSVGFPHNWKNYSAHSSGNECEHVDKVTGFDDSNTSSHKKTADETSQEAEGNNNIASLRLSQPQVGVIYNGENGFSNVDNSNASSHKKAADETLQEDMEPEGNDNIAGLKLSQQEDMEPEGNDNIASLDLSQPQVAVISNGENGVSNVAAAENSQSLMSVFEFDPTHEPDSVRSPLYVKKLEFDQLSSDHKDKKCIKKKNVDDTGNLCSRVLTRSIAKKSHMMLIKDGKAEVKCFTSPVRRSTRVLNYKK