AlfalfaGEDB | MS.gene002496

M. sativa cultivar XinJiangDaYe / MS.gene002496

KEGG: -
GO: -
PFAM: PF09133.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002496.t1	XP_003613728.2	87.2	351	39	2	1	350	1	346	1.90E-143	518.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002496.t1	Q8RWD7	38.1	113	63	3	22	132	64	171	2.1e-13	78.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002496.t1	G7KDV8	87.2	351	39	2	1	350	1	346	1.4e-143	518.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene002496.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002496.t1	MTR_7g039520	88.034	351	36	2	1	350	1	346	0.0	631
MS.gene002496.t1	MTR_5g040080	88.319	351	35	2	1	350	1	346	0.0	621
MS.gene002496.t1	MTR_2g014410	85.375	253	18	1	96	348	42	275	1.00e-145	415
MS.gene002496.t1	MTR_1g069015	33.803	142	80	6	1	132	1	138	3.45e-16	79.7
MS.gene002496.t1	MTR_1g069020	35.294	119	63	4	22	134	28	138	1.12e-14	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002496.t1	AT1G58210	38.053	113	63	3	22	132	64	171	9.56e-18	82.8

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Find 72 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCTTGCATTGGTTTGG+AGG	0.442882	2.1:-70626807	None:intergenic
AAACCTCCAAACCAATGCAA+GGG	0.637222	2.1:+70626804	MS.gene002496:CDS
AACAGCTGATGAGACCTCAC+AGG	0.646895	2.1:+70627998	MS.gene002496:CDS
AAGAAGAATGTAGATGATAC+CGG	0.549093	2.1:+70628470	MS.gene002496:CDS
AAGTCACATGATGCTTATAA+AGG	0.387819	2.1:+70628535	MS.gene002496:CDS
AATGTTGTAGAGACTCAAGA+TGG	0.656225	2.1:+70626990	MS.gene002496:CDS
AATTATTCAGCTCATAGTTC+AGG	0.376079	2.1:+70627909	MS.gene002496:CDS
ACAACAATATTGCGAGTCTA+AGG	0.409478	2.1:+70628033	MS.gene002496:CDS
ACACTGTCTGGCTCATGGGT+AGG	0.608929	2.1:-70628371	None:intergenic
ACATGATGCTTATAAAGGAT+GGG	0.566978	2.1:+70628540	MS.gene002496:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGAATGTAGATGATAC+CGG	+	chr2.1:70628470-70628489	MS.gene002496:CDS	30.0%
AAGCAAACACACACTTAAAA+AGG	-	chr2.1:70627470-70627489	None:intergenic	30.0%
AAGTCACATGATGCTTATAA+AGG	+	chr2.1:70628535-70628554	MS.gene002496:CDS	30.0%
AATTATTCAGCTCATAGTTC+AGG	+	chr2.1:70627909-70627928	MS.gene002496:CDS	30.0%
ACATGATGCTTATAAAGGAT+GGG	+	chr2.1:70628540-70628559	MS.gene002496:CDS	30.0%
ATCTGCAAAAATAAGCAAGT+AGG	-	chr2.1:70626759-70626778	None:intergenic	30.0%
CACAGAAATGAGAAAGAAAA+AGG	-	chr2.1:70627092-70627111	None:intergenic	30.0%
GTGATTTCTAATGGTGAAAA+TGG	+	chr2.1:70628287-70628306	MS.gene002496:CDS	30.0%
TCCAATTTCTTTACGTAAAG+TGG	-	chr2.1:70628404-70628423	None:intergenic	30.0%
TCCACTTTACGTAAAGAAAT+TGG	+	chr2.1:70628400-70628419	MS.gene002496:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	70626616	70628631	70626616	ID=MS.gene002496
chr2.1	mRNA	70626616	70628631	70626616	ID=MS.gene002496.t1;Parent=MS.gene002496
chr2.1	exon	70626616	70626684	70626616	ID=MS.gene002496.t1.exon1;Parent=MS.gene002496.t1
chr2.1	CDS	70626616	70626684	70626616	ID=cds.MS.gene002496.t1;Parent=MS.gene002496.t1
chr2.1	exon	70626777	70626856	70626777	ID=MS.gene002496.t1.exon2;Parent=MS.gene002496.t1
chr2.1	CDS	70626777	70626856	70626777	ID=cds.MS.gene002496.t1;Parent=MS.gene002496.t1
chr2.1	exon	70626941	70627079	70626941	ID=MS.gene002496.t1.exon3;Parent=MS.gene002496.t1
chr2.1	CDS	70626941	70627079	70626941	ID=cds.MS.gene002496.t1;Parent=MS.gene002496.t1
chr2.1	exon	70627867	70628631	70627867	ID=MS.gene002496.t1.exon4;Parent=MS.gene002496.t1
chr2.1	CDS	70627867	70628631	70627867	ID=cds.MS.gene002496.t1;Parent=MS.gene002496.t1

Gene Sequence

>MS.gene002496

ATGGCTTCCAAAACCCCAATACGTTCCACCACCACACCCCTCTCCAACTCAATCTTCAAATCTAAACACGTATTTCCCATTCACTCTTCTCTCTTGTTTCTTTTTCTTCACGAAATTATTCACAGTTACATATTCATGAACCTACTTGCTTATTTTTGCAGATTTTCTTACATGAATGGTGGCTTGTGAAACCTCCAAACCAATGCAAGGGTTTAGCTCTTGCTGGCATTGCTTCAATGGAGTAATTTTTTTCATTTTCATTTTGTAGGTTTCTAATTGGTTATTTGTTTGGGTAATTACTTATTGTGACTATTGATGCATGCAGGAGAGAAAGAATGTTTTTTTCTTCATTAATTGTAGAGAGACATGAACCCAATGTTGTAGAGACTCAAGATGGCATCACTGTAATTTTCCACGGTTTGATTAACGCCTCACATACATATCAAAATGGTTTTTCTTCTGAGGTAGGTTATCCTTTTTCTTTCTCATTTCTGTGAAATTGATTTTTGATTAAAATTGAGTTGTATGTAAAACGTTGTCTGTTTTAATACATTCAAGCAAAACTGAATTGAATAATAATTTGAGTAAAAATCAAATTTGGACACATAAGCTACAAATTTCAGCTTCGAGTTGGCATTCATTTTTGACATGTCAACATTAGTGTCTGGAATCACTTTTAGGCCTCTATTAAAATGAATATAAACACACACTTAAATTTTTAGAATTAATTTTGGTTTAATTGAGTTTAAATAATTTCATTCATGTTCACATGTTTTTACTTCCAAAGAAAATTTGATGCAAAAAGTAGTGTTAAATTTTTAATTCTACACAAAATTTGCTGTTTATCAATACCTTTTTAAGTGTGTGTTTGCTTCATGTTCAAGGGTCATCCACAGTGGGTTGAACTTGAACCTGAAGCTCCAAGTGATAGCCTTCAAAGTTCTAACACACTGACTCCACACAAACCATAATTGAGGTTTATCAATCATTCGGTTTTATTTTGTAGAAATCAAACTCCTATATTTTTGCTAACTTTGTCATGTGAAACTAGACACACGCACAAACATGAGATTTAGAGTCTGGCAATTTTGTCTGACAGGAACCCAAAATCTATACTTTTTGGCAAAATCAATTTTGTTAGTGAAACAAAATACACATAATCTTCAATGGATTGAATAAATACCCCTGTGTGTGATCGTGCCTGTTATTGACGCATTTAATTTTCTGGAAATATTCAATGTCTTTCAACAGTTATGTCGCCGTTTCTCAGTTGGATTTCCACACAATTGGAAAAATTATTCAGCTCATAGTTCAGGAAATGAATGTGAACACGTGGATAAAGTTACTGGTTTTGACGACTCAAATACTTCTTCCCACAAAAAAACAGCTGATGAGACCTCACAGGAAGCTGAAGGTAACAACAATATTGCGAGTCTAAGGTTGTCTCAACCTCAAGTTGGCGTGATTTATAATGGTGAAAATGGATTCTCAAATGTTGACAACTCAAATGCTTCATCCCACAAAAAAGCAGCTGATGAAACTTTGCAGGAAGATATGGAACCTGAAGGTAATGACAACATTGCGGGTCTTAAGTTGTCTCAACAGGAAGATATGGAACCGGAAGGTAATGACAACATTGCGAGTCTTGATTTGTCTCAACCGCAGGTTGCCGTGATTTCTAATGGTGAAAATGGAGTCTCAAATGTTGCTGCAGCTGAAAATAGTCAATCTTTGATGAGTGTATTTGAATTTGATCCTACCCATGAGCCAGACAGTGTTAGGTCTCCACTTTACGTAAAGAAATTGGAGTTTGACCAATTATCAAGTGACCACAAGGATAAGAAATGTATCAAGAAGAAGAATGTAGATGATACCGGTAACTTGTGTAGTAGGGTGCTAACAAGAAGCATTGCCAAGAAAAGTCACATGATGCTTATAAAGGATGGGAAAGCTGAAGTAAAATGTTTCACTTCTCCTGTTAGAAGATCTACCAGGGTACTAAATTATAAAAAATGA

Protein sequence

>MS.gene002496.t1

MASKTPIRSTTTPLSNSIFKSKHIFLHEWWLVKPPNQCKGLALAGIASMERERMFFSSLIVERHEPNVVETQDGITVIFHGLINASHTYQNGFSSELCRRFSVGFPHNWKNYSAHSSGNECEHVDKVTGFDDSNTSSHKKTADETSQEAEGNNNIASLRLSQPQVGVIYNGENGFSNVDNSNASSHKKAADETLQEDMEPEGNDNIAGLKLSQQEDMEPEGNDNIASLDLSQPQVAVISNGENGVSNVAAAENSQSLMSVFEFDPTHEPDSVRSPLYVKKLEFDQLSSDHKDKKCIKKKNVDDTGNLCSRVLTRSIAKKSHMMLIKDGKAEVKCFTSPVRRSTRVLNYKK