AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002508

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002508.t1 MTR_2g014680 93.506 308 19 1 1 307 1 308 0.0 605
MS.gene002508.t1 MTR_4g088245 62.154 325 87 9 1 301 1 313 3.61e-136 388
MS.gene002508.t1 MTR_8g069160 69.507 223 53 3 1 208 1 223 1.31e-113 329
MS.gene002508.t1 MTR_4g078875 60.662 272 100 6 12 278 5 274 3.61e-110 321
MS.gene002508.t1 MTR_2g090735 58.219 292 108 6 1 289 1 281 1.33e-105 310
MS.gene002508.t1 MTR_8g102240 61.233 227 74 5 8 224 3 225 1.12e-87 270
MS.gene002508.t1 MTR_8g102240 61.233 227 74 5 8 224 3 225 1.15e-87 270
MS.gene002508.t1 MTR_1g093680 50.403 248 117 4 2 246 7 251 4.19e-74 235
MS.gene002508.t1 MTR_5g053430 58.763 194 77 2 27 220 34 224 1.95e-73 233
MS.gene002508.t1 MTR_5g053430 58.763 194 77 2 27 220 34 224 2.05e-73 233
MS.gene002508.t1 MTR_7g033320 56.216 185 74 3 31 212 35 215 1.19e-66 217
MS.gene002508.t1 MTR_1g093670 46.798 203 87 3 32 233 7 189 1.15e-49 168
MS.gene002508.t1 MTR_4g078895 60.000 65 24 1 30 94 16 78 1.24e-19 82.0
MS.gene002508.t1 MTR_2g014700 68.889 45 14 0 118 162 44 88 4.37e-16 72.8
MS.gene002508.t1 MTR_6g084430 32.317 164 92 6 53 213 5 152 3.87e-15 75.1
MS.gene002508.t1 MTR_7g011130 30.457 197 120 4 36 231 2 182 1.24e-14 73.9
MS.gene002508.t1 MTR_3g070030 30.337 178 100 5 41 210 7 168 2.15e-14 73.2
MS.gene002508.t1 MTR_7g085260 31.111 180 93 9 46 212 10 171 3.87e-13 69.7
MS.gene002508.t1 MTR_3g109340 31.461 178 100 7 38 210 8 168 4.98e-13 69.3
MS.gene002508.t1 MTR_6g032770 34.104 173 77 11 53 210 18 168 6.36e-13 68.9
MS.gene002508.t1 MTR_3g109340 31.285 179 100 7 38 210 8 169 6.63e-13 68.9
MS.gene002508.t1 MTR_3g435150 33.803 142 77 5 53 193 16 141 7.76e-13 68.2
MS.gene002508.t1 MTR_3g022390 80.556 36 7 0 193 228 38 73 2.55e-12 61.6
MS.gene002508.t1 MTR_7g005280 33.333 147 70 8 53 193 15 139 3.23e-12 65.9
MS.gene002508.t1 MTR_5g012080 25.792 221 136 8 47 259 1 201 1.09e-11 65.1
MS.gene002508.t1 MTR_1g069805 29.101 189 105 8 52 233 9 175 1.43e-11 64.3
MS.gene002508.t1 MTR_8g023880 33.974 156 74 8 52 192 6 147 2.17e-11 63.5
MS.gene002508.t1 MTR_2g078700 32.738 168 86 9 53 210 23 173 2.31e-11 64.3
MS.gene002508.t1 MTR_3g093040 31.210 157 85 8 50 202 105 242 7.41e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002508.t1 AT4G28500 63.636 231 73 3 1 222 1 229 1.86e-106 312
MS.gene002508.t1 AT1G28470 56.537 283 91 6 1 252 1 282 2.17e-105 310
MS.gene002508.t1 AT4G29230 61.883 223 70 3 6 217 2 220 2.98e-91 278
MS.gene002508.t1 AT4G29230 61.883 223 70 3 6 217 2 220 1.49e-90 278
MS.gene002508.t1 AT4G29230 60.987 223 71 3 6 217 2 219 1.68e-89 276
MS.gene002508.t1 AT5G56620 62.944 197 59 4 32 217 25 218 1.26e-81 253
MS.gene002508.t1 AT5G56620 62.944 197 59 4 32 217 25 218 1.66e-81 253
MS.gene002508.t1 AT5G56620 62.944 197 59 4 32 217 25 218 2.29e-81 251
MS.gene002508.t1 AT1G25580 56.545 191 74 4 27 217 34 215 4.54e-69 221
MS.gene002508.t1 AT5G14490 47.032 219 108 5 11 228 18 229 1.13e-56 184
MS.gene002508.t1 AT5G14490 50.500 200 94 4 30 228 37 232 3.86e-56 185
MS.gene002508.t1 AT5G14490 50.500 200 94 4 30 228 34 229 4.28e-56 185
MS.gene002508.t1 AT5G14490 50.500 200 94 4 30 228 37 232 6.76e-56 185
MS.gene002508.t1 AT3G01600 49.462 186 90 3 30 214 34 216 1.48e-50 171
MS.gene002508.t1 AT3G04060 32.609 184 98 7 41 215 8 174 4.43e-19 86.7
MS.gene002508.t1 AT5G18270 33.514 185 94 10 41 215 10 175 2.80e-16 78.6
MS.gene002508.t1 AT5G18270 33.514 185 94 10 41 215 10 175 4.36e-16 77.8
MS.gene002508.t1 AT3G18400 33.803 142 77 5 53 193 5 130 9.10e-15 73.9
MS.gene002508.t1 AT1G33060 30.645 186 94 9 40 212 11 174 9.67e-14 72.0
MS.gene002508.t1 AT1G33060 30.645 186 94 9 40 212 11 174 1.01e-13 72.0
MS.gene002508.t1 AT4G35580 31.551 187 93 10 46 219 2 166 5.38e-13 69.7
MS.gene002508.t1 AT4G35580 31.551 187 93 10 46 219 2 166 6.39e-13 69.3
MS.gene002508.t1 AT4G35580 31.551 187 93 10 46 219 2 166 6.51e-13 69.3
MS.gene002508.t1 AT2G24430 29.586 169 97 6 52 214 15 167 2.52e-12 67.0
MS.gene002508.t1 AT2G24430 29.586 169 97 6 52 214 15 167 2.52e-12 67.0
MS.gene002508.t1 AT1G76420 29.279 222 128 11 52 265 21 221 1.61e-11 64.7
MS.gene002508.t1 AT1G01720 30.464 151 83 6 47 194 1 132 2.01e-11 63.9
MS.gene002508.t1 AT3G29035 32.867 143 77 5 53 193 24 149 2.73e-11 63.9
MS.gene002508.t1 AT2G33480 29.412 187 98 10 41 221 7 165 5.09e-11 62.4
MS.gene002508.t1 AT2G33480 29.101 189 98 10 41 221 7 167 6.20e-11 62.4

Find 56 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACAAGATGGCACAAAAC+TGG 0.293534 2.1:-70515642 MS.gene002508:CDS
TCTAGTACTTCTACATCATT+TGG 0.314489 2.1:+70517244 None:intergenic
TCCACAAGAGCTACATTGTT+GGG 0.338920 2.1:+70515336 None:intergenic
CCAACGCTTCAAGGAGATAA+TGG 0.355602 2.1:-70517157 MS.gene002508:CDS
ATCACCCAGTTAGTCTTCTC+TGG 0.385881 2.1:+70515531 None:intergenic
TGTAGAAGTACTAGAGCATT+TGG 0.390413 2.1:-70517236 MS.gene002508:CDS
GAAAACCAGAGAAGACTAAC+TGG 0.406375 2.1:-70515536 MS.gene002508:CDS
AACTATTATTCGCTTATCAA+TGG 0.414728 2.1:-70515208 MS.gene002508:CDS
GGGTGGAGTTAATGAATTGC+CGG 0.417191 2.1:-70517293 MS.gene002508:CDS
CATGTTGTCTAGGCTGTGTC+TGG 0.424066 2.1:+70515439 None:intergenic
TCACTTTGAACAGACATGTT+TGG 0.426034 2.1:+70515234 None:intergenic
CTAGTACTTCTACATCATTT+GGG 0.458512 2.1:+70517245 None:intergenic
GAGTTCATACCAACGCTTCA+AGG 0.459148 2.1:-70517166 MS.gene002508:CDS
CCATTATCTCCTTGAAGCGT+TGG 0.461132 2.1:+70517157 None:intergenic
GGGTCAAATTTCACTCCAGC+TGG 0.465906 2.1:+70517265 None:intergenic
GGGCTGCACTGTTATTATCA+TGG 0.468166 2.1:+70515358 None:intergenic
CTTCTTCATTCATACCAAGA+TGG 0.471328 2.1:+70515499 None:intergenic
ATATGCATGTTGGTCATAGT+AGG 0.471621 2.1:-70515281 MS.gene002508:CDS
GCCGCATGAGGGGCATTCAA+TGG 0.476343 2.1:+70517567 None:intergenic
TACACCAACTATTGCAAAGA+AGG 0.482059 2.1:-70515558 MS.gene002508:CDS
CCTTCAAAAGCATACACAAC+AGG 0.484981 2.1:-70515708 MS.gene002508:CDS
TACTATGACCAACATGCATA+TGG 0.492828 2.1:+70515283 None:intergenic
TGCAAACAAAGTAAGAGTAC+TGG 0.494119 2.1:-70515181 MS.gene002508:CDS
GAATTGCCGGGGTTACCAGC+TGG 0.498475 2.1:-70517280 MS.gene002508:CDS
GGTGGAGTTAATGAATTGCC+GGG 0.501114 2.1:-70517292 MS.gene002508:CDS
AAAATAATCGACAAAGGAAG+TGG 0.506740 2.1:-70515381 MS.gene002508:CDS
TTCAATATTATGGCCGCATG+AGG 0.506854 2.1:+70517555 None:intergenic
AAATCCCTTCACAACACCAT+TGG 0.513981 2.1:+70515599 None:intergenic
AACATGTCTGTTCAAAGTGA+TGG 0.516868 2.1:-70515231 MS.gene002508:CDS
TTCCACAAGAGCTACATTGT+TGG 0.516933 2.1:+70515335 None:intergenic
TCAATATTATGGCCGCATGA+GGG 0.518397 2.1:+70517556 None:intergenic
GTTGCAGGAGTTAGCAAAGA+TGG 0.520564 2.1:-70515756 MS.gene002508:intron
ATGGAATTACCATGTTGTCT+AGG 0.524147 2.1:+70515429 None:intergenic
CCCCAACAATGTAGCTCTTG+TGG 0.528333 2.1:-70515337 MS.gene002508:CDS
AAGAAGGAATTGAAACAAGA+TGG 0.540463 2.1:-70515653 MS.gene002508:CDS
GTGATGCATCAATACCATCT+TGG 0.542364 2.1:-70515513 MS.gene002508:CDS
ATGAATGAAGAAGAAAGAGA+TGG 0.549873 2.1:-70515489 MS.gene002508:CDS
AAACAAGATGGCACAAAACT+GGG 0.551473 2.1:-70515641 MS.gene002508:CDS
TTCACTCCAGCTGGTAACCC+CGG 0.559582 2.1:+70517274 None:intergenic
AAGGTTCACACTGATGAAGA+AGG 0.564034 2.1:-70515669 MS.gene002508:CDS
CAATATTATGGCCGCATGAG+GGG 0.567135 2.1:+70517557 None:intergenic
AGGAACAAGGAAAAGAAGAA+AGG 0.568088 2.1:-70515688 MS.gene002508:CDS
ATGTTTGGTATAATCAGTTG+TGG 0.571913 2.1:+70515249 None:intergenic
TATGCATGTTGGTCATAGTA+GGG 0.574413 2.1:-70515280 MS.gene002508:CDS
CCACAAGAGCTACATTGTTG+GGG 0.578626 2.1:+70515337 None:intergenic
ACACACCCAGCACAACTACC+AGG 0.587266 2.1:-70517124 MS.gene002508:intron
GGTATGAACTCATCAATAAG+TGG 0.587548 2.1:+70517178 None:intergenic
CAGACACAGCCTAGACAACA+TGG 0.593480 2.1:-70515438 MS.gene002508:CDS
AATTATGACCATATGCATGT+TGG 0.599378 2.1:-70515291 MS.gene002508:CDS
ACCATTGAATGCCCCTCATG+CGG 0.616642 2.1:-70517568 MS.gene002508:CDS
AGAAGTACTAGAGCATTTGG+AGG 0.620573 2.1:-70517233 MS.gene002508:CDS
AAAGATTAAGAACTATGGCA+TGG 0.622011 2.1:-70517666 None:intergenic
AAGCATACACAACAGGAACA+AGG 0.626885 2.1:-70515701 MS.gene002508:CDS
CACAAGAGCTACATTGTTGG+GGG 0.638019 2.1:+70515338 None:intergenic
GTGGAGTTAATGAATTGCCG+GGG 0.680068 2.1:-70517291 MS.gene002508:CDS
AAAACCAGAGAAGACTAACT+GGG 0.696934 2.1:-70515535 MS.gene002508:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACACAAAAAAAAAAAAAAAA+AGG + chr2.1:70516811-70516830 None:intergenic 10.0%
!! ATTATCATAAGTTAATAAAA+AGG + chr2.1:70516424-70516443 None:intergenic 10.0%
!! TTATCATAAGTTAATAAAAA+GGG + chr2.1:70516423-70516442 None:intergenic 10.0%
!!! AAAAAAGTGATTTTTTTTTA+AGG - chr2.1:70516291-70516310 MS.gene002508:intron 10.0%
!!! AAAAAGTGATTTTTTTTTAA+GGG - chr2.1:70516292-70516311 MS.gene002508:intron 10.0%
!!! TGAAATAGATTTTAATTATA+AGG - chr2.1:70515900-70515919 MS.gene002508:intron 10.0%
!!! TTTTTAAAAATGGATTTTTA+TGG + chr2.1:70516116-70516135 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTGTGTT+GGG - chr2.1:70516812-70516831 MS.gene002508:intron 10.0%
!!! TTTTTTTTTTTTTTTTGTGT+TGG - chr2.1:70516811-70516830 MS.gene002508:intron 10.0%
!! AAAGAAAATTATTTGTCAAT+CGG - chr2.1:70516380-70516399 MS.gene002508:intron 15.0%
!! ATTAACATAATTTAGAGATT+TGG - chr2.1:70515750-70515769 MS.gene002508:CDS 15.0%
!! TAAACTAAAGGAATTAATAT+CGG + chr2.1:70515472-70515491 None:intergenic 15.0%
!! TAATATTGAAGTAAAAAATC+AGG - chr2.1:70515280-70515299 MS.gene002508:CDS 15.0%
!! TTAAATTAAATGTAAAAACC+TGG + chr2.1:70515719-70515738 None:intergenic 15.0%
!!! AATAGATTTTAATTATAAGG+CGG - chr2.1:70515903-70515922 MS.gene002508:intron 15.0%
!!! CATTAACTTTCTTTTTATTA+TGG + chr2.1:70516470-70516489 None:intergenic 15.0%
!!! GAACTCATTTTTTTTAAAAA+TGG + chr2.1:70516126-70516145 None:intergenic 15.0%
!!! GATTTTTTACTTCAATATTA+TGG + chr2.1:70515280-70515299 None:intergenic 15.0%
!!! TAATTATTTTTTGTGAATTG+TGG - chr2.1:70516440-70516459 MS.gene002508:intron 15.0%
!! AAATTTATGAGATCTAAATG+TGG + chr2.1:70515960-70515979 None:intergenic 20.0%
!! AAGAAAATTATTTGTCAATC+GGG - chr2.1:70516381-70516400 MS.gene002508:intron 20.0%
!! CACACAAATTAATAAACTAA+AGG + chr2.1:70515484-70515503 None:intergenic 20.0%
!! GTGATACATTATTAATCAAA+AGG + chr2.1:70516883-70516902 None:intergenic 20.0%
!! TATGAAAAAATAATCGACAA+AGG - chr2.1:70517435-70517454 MS.gene002508:intron 20.0%
!!! AAAAATTGTTCCTTAAGTTT+TGG - chr2.1:70516774-70516793 MS.gene002508:intron 20.0%
!!! ATCTATTTTTTTCAACTACA+AGG + chr2.1:70516170-70516189 None:intergenic 20.0%
!!! TAATTTGTTACTGTAACATT+AGG - chr2.1:70516723-70516742 MS.gene002508:intron 20.0%
!!! TCATTTTTAAGTGTTTGTTT+AGG + chr2.1:70516272-70516291 None:intergenic 20.0%
!!! TGAAAAAAATCTGAAACAAA+CGG - chr2.1:70516332-70516351 MS.gene002508:intron 20.0%
!!! TTGATGATTTTTGATACATA+GGG - chr2.1:70515509-70515528 MS.gene002508:CDS 20.0%
!!! TTTGATGATTTTTGATACAT+AGG - chr2.1:70515508-70515527 MS.gene002508:CDS 20.0%
! AAAAATCAGGTACTAATCAA+TGG - chr2.1:70515293-70515312 MS.gene002508:CDS 25.0%
! AACTATTATTCGCTTATCAA+TGG - chr2.1:70517614-70517633 MS.gene002508:CDS 25.0%
! AGAAAATTATTTGTCAATCG+GGG - chr2.1:70516382-70516401 MS.gene002508:intron 25.0%
! ATAGAAGTAGTTCTTTACTT+AGG - chr2.1:70515980-70515999 MS.gene002508:intron 25.0%
! ATATGTCAAATTAGAGATGA+AGG - chr2.1:70516977-70516996 MS.gene002508:intron 25.0%
! CATTGCATGTGTTAATTATT+GGG - chr2.1:70515787-70515806 MS.gene002508:intron 25.0%
! GTACCAAAAGAAATAGAATT+GGG + chr2.1:70516905-70516924 None:intergenic 25.0%
! GTTACAGTAACAAATTACTT+AGG + chr2.1:70516720-70516739 None:intergenic 25.0%
! TCCTAAAATGAAAAGCTATT+AGG + chr2.1:70516209-70516228 None:intergenic 25.0%
! TGTACCAAAAGAAATAGAAT+TGG + chr2.1:70516906-70516925 None:intergenic 25.0%
! TTTGATCTTAAATCTTGCTA+AGG - chr2.1:70515339-70515358 MS.gene002508:CDS 25.0%
!! GAAAAAAATCTGAAACAAAC+GGG - chr2.1:70516333-70516352 MS.gene002508:intron 25.0%
!! GTTAATTAATTTGATGCATG+CGG + chr2.1:70515845-70515864 None:intergenic 25.0%
!! TCCTAATAGCTTTTCATTTT+AGG - chr2.1:70516205-70516224 MS.gene002508:intron 25.0%
!!! AATGGATTTTTATGGATAGT+AGG + chr2.1:70516108-70516127 None:intergenic 25.0%
!!! GACACTTATTTTAAAAGAGA+CGG - chr2.1:70517006-70517025 MS.gene002508:intron 25.0%
!!! TCAAATTGCTATTGATGTTT+TGG + chr2.1:70516690-70516709 None:intergenic 25.0%
AAAATAATCGACAAAGGAAG+TGG - chr2.1:70517441-70517460 MS.gene002508:intron 30.0%
AAACCAATGAATGCTTGAAT+TGG - chr2.1:70516558-70516577 MS.gene002508:intron 30.0%
AAGAAGGAATTGAAACAAGA+TGG - chr2.1:70517169-70517188 MS.gene002508:CDS 30.0%
AATTATGACCATATGCATGT+TGG - chr2.1:70517531-70517550 MS.gene002508:intron 30.0%
ATGAATGAAGAAGAAAGAGA+TGG - chr2.1:70517333-70517352 MS.gene002508:intron 30.0%
ATGTTTGGTATAATCAGTTG+TGG + chr2.1:70517576-70517595 None:intergenic 30.0%
ATTGTTACCTAAAATGTTGC+AGG - chr2.1:70517051-70517070 MS.gene002508:intron 30.0%
CTAGTACTTCTACATCATTT+GGG + chr2.1:70515580-70515599 None:intergenic 30.0%
GCATTGCATGTGTTAATTAT+TGG - chr2.1:70515786-70515805 MS.gene002508:intron 30.0%
TCTAGTACTTCTACATCATT+TGG + chr2.1:70515581-70515600 None:intergenic 30.0%
TGGAGAGAATAAATGTTATG+TGG + chr2.1:70515940-70515959 None:intergenic 30.0%
TTTCTTTGCTTGCAATTGTA+AGG + chr2.1:70516367-70516386 None:intergenic 30.0%
! ATGATTTTTGATACATAGGG+TGG - chr2.1:70515512-70515531 MS.gene002508:CDS 30.0%
! CGAATCTTTTACGTTGTTAA+TGG + chr2.1:70517415-70517434 None:intergenic 30.0%
! TTTTCCTTCTTTGCAATAGT+TGG + chr2.1:70517271-70517290 None:intergenic 30.0%
!! ACTTGCTTTTCCAAAACTTA+AGG + chr2.1:70516787-70516806 None:intergenic 30.0%
!! TCACCCAATTCTATTTCTTT+TGG - chr2.1:70516899-70516918 MS.gene002508:intron 30.0%
!!! AAATTCGCCACTTTTTTCAT+AGG - chr2.1:70517091-70517110 MS.gene002508:intron 30.0%
!!! ACTAGAGCAATTTTTTCCAA+TGG - chr2.1:70517207-70517226 MS.gene002508:CDS 30.0%
AAAACCAGAGAAGACTAACT+GGG - chr2.1:70517287-70517306 MS.gene002508:CDS 35.0%
AAACAAGATGGCACAAAACT+GGG - chr2.1:70517181-70517200 MS.gene002508:CDS 35.0%
AACACATGCAATGCATCAAA+CGG + chr2.1:70515780-70515799 None:intergenic 35.0%
AACATGTCTGTTCAAAGTGA+TGG - chr2.1:70517591-70517610 MS.gene002508:CDS 35.0%
AGGAACAAGGAAAAGAAGAA+AGG - chr2.1:70517134-70517153 MS.gene002508:CDS 35.0%
ATATGCATGTTGGTCATAGT+AGG - chr2.1:70517541-70517560 MS.gene002508:intron 35.0%
ATGGAATTACCATGTTGTCT+AGG + chr2.1:70517396-70517415 None:intergenic 35.0%
CTTCTTCATTCATACCAAGA+TGG + chr2.1:70517326-70517345 None:intergenic 35.0%
CTTGCAATTGTAAGGACTAA+GGG + chr2.1:70516359-70516378 None:intergenic 35.0%
GGTATGAACTCATCAATAAG+TGG + chr2.1:70515647-70515666 None:intergenic 35.0%
TACACCAACTATTGCAAAGA+AGG - chr2.1:70517264-70517283 MS.gene002508:CDS 35.0%
TACTATGACCAACATGCATA+TGG + chr2.1:70517542-70517561 None:intergenic 35.0%
TATAACACACTTCAACGAGT+TGG + chr2.1:70516536-70516555 None:intergenic 35.0%
TATGCATGTTGGTCATAGTA+GGG - chr2.1:70517542-70517561 MS.gene002508:intron 35.0%
TCACTTTGAACAGACATGTT+TGG + chr2.1:70517591-70517610 None:intergenic 35.0%
TTGAAGGCCTATGAAAAAAG+TGG + chr2.1:70517101-70517120 None:intergenic 35.0%
TTGCCAATTCAAGCATTCAT+TGG + chr2.1:70516564-70516583 None:intergenic 35.0%
! CTCAAGCTCTGGTAATTAAA+AGG - chr2.1:70515367-70515386 MS.gene002508:CDS 35.0%
! TGCAAACAAAGTAAGAGTAC+TGG - chr2.1:70517641-70517660 MS.gene002508:CDS 35.0%
!! TGTAGAAGTACTAGAGCATT+TGG - chr2.1:70515586-70515605 MS.gene002508:CDS 35.0%
!!! TTTTCCAATGGTGTTGTGAA+GGG - chr2.1:70517219-70517238 MS.gene002508:CDS 35.0%
!!! TTTTTCCAATGGTGTTGTGA+AGG - chr2.1:70517218-70517237 MS.gene002508:CDS 35.0%
AAAAACCTGGTAGTTGTGCT+GGG + chr2.1:70515706-70515725 None:intergenic 40.0%
AAATCCCTTCACAACACCAT+TGG + chr2.1:70517226-70517245 None:intergenic 40.0%
AAGCATACACAACAGGAACA+AGG - chr2.1:70517121-70517140 MS.gene002508:intron 40.0%
AAGGTTCACACTGATGAAGA+AGG - chr2.1:70517153-70517172 MS.gene002508:CDS 40.0%
ATGACCACCAAACTCTCAAT+AGG - chr2.1:70516588-70516607 MS.gene002508:intron 40.0%
GAAAACCAGAGAAGACTAAC+TGG - chr2.1:70517286-70517305 MS.gene002508:CDS 40.0%
GAAAATTACACACTCTAGGC+TGG + chr2.1:70516494-70516513 None:intergenic 40.0%
GAAACAAGATGGCACAAAAC+TGG - chr2.1:70517180-70517199 MS.gene002508:CDS 40.0%
GCCTGAAAATTACACACTCT+AGG + chr2.1:70516498-70516517 None:intergenic 40.0%
GCTTGCAATTGTAAGGACTA+AGG + chr2.1:70516360-70516379 None:intergenic 40.0%
GTGATGCATCAATACCATCT+TGG - chr2.1:70517309-70517328 MS.gene002508:intron 40.0%
TAAAAACCTGGTAGTTGTGC+TGG + chr2.1:70515707-70515726 None:intergenic 40.0%
TAATTACCAGAGCTTGAGAC+TGG + chr2.1:70515365-70515384 None:intergenic 40.0%
TCAATATTATGGCCGCATGA+GGG + chr2.1:70515269-70515288 None:intergenic 40.0%
TCCACAAGAGCTACATTGTT+GGG + chr2.1:70517489-70517508 None:intergenic 40.0%
TGACCACCAAACTCTCAATA+GGG - chr2.1:70516589-70516608 MS.gene002508:intron 40.0%
TGTTGGGATGTTTACACTCT+TGG - chr2.1:70516828-70516847 MS.gene002508:intron 40.0%
TTCAATATTATGGCCGCATG+AGG + chr2.1:70515270-70515289 None:intergenic 40.0%
TTCCACAAGAGCTACATTGT+TGG + chr2.1:70517490-70517509 None:intergenic 40.0%
! CCTGTTGTGTATGCTTTTGA+AGG + chr2.1:70517117-70517136 None:intergenic 40.0%
! CCTTCAAAAGCATACACAAC+AGG - chr2.1:70517114-70517133 MS.gene002508:intron 40.0%
! GCCTAGAGTGTGTAATTTTC+AGG - chr2.1:70516494-70516513 MS.gene002508:intron 40.0%
! GCTAACTCCTGCAACATTTT+AGG + chr2.1:70517061-70517080 None:intergenic 40.0%
!! AGAAGTACTAGAGCATTTGG+AGG - chr2.1:70515589-70515608 MS.gene002508:CDS 40.0%
!!! ATAGGGGCATCCTATTTTGA+CGG - chr2.1:70516606-70516625 MS.gene002508:intron 40.0%
AGAGACGATCTTGTTCTGCA+CGG - chr2.1:70515810-70515829 MS.gene002508:intron 45.0%
CAATATTATGGCCGCATGAG+GGG + chr2.1:70515268-70515287 None:intergenic 45.0%
CACAAGAGCTACATTGTTGG+GGG + chr2.1:70517487-70517506 None:intergenic 45.0%
CCAACGCTTCAAGGAGATAA+TGG - chr2.1:70515665-70515684 MS.gene002508:CDS 45.0%
CCACAAGAGCTACATTGTTG+GGG + chr2.1:70517488-70517507 None:intergenic 45.0%
CCATTATCTCCTTGAAGCGT+TGG + chr2.1:70515668-70515687 None:intergenic 45.0%
GAAAAAGCCCCCGTCAAAAT+AGG + chr2.1:70516619-70516638 None:intergenic 45.0%
GACCACCAAACTCTCAATAG+GGG - chr2.1:70516590-70516609 MS.gene002508:intron 45.0%
GAGTTCATACCAACGCTTCA+AGG - chr2.1:70515656-70515675 MS.gene002508:CDS 45.0%
GGGCTGCACTGTTATTATCA+TGG + chr2.1:70517467-70517486 None:intergenic 45.0%
GGGTGGAGTTAATGAATTGC+CGG - chr2.1:70515529-70515548 MS.gene002508:CDS 45.0%
GGTGGAGTTAATGAATTGCC+GGG - chr2.1:70515530-70515549 MS.gene002508:CDS 45.0%
GTGGAGTTAATGAATTGCCG+GGG - chr2.1:70515531-70515550 MS.gene002508:CDS 45.0%
GTTGCAGGAGTTAGCAAAGA+TGG - chr2.1:70517066-70517085 MS.gene002508:intron 45.0%
TTGTCGAATCTCTACGACTC+TGG - chr2.1:70515408-70515427 MS.gene002508:CDS 45.0%
! AATTTGATGCATGCGGACTG+CGG + chr2.1:70515838-70515857 None:intergenic 45.0%
!! ATCACCCAGTTAGTCTTCTC+TGG + chr2.1:70517294-70517313 None:intergenic 45.0%
!!! TAGGGGCATCCTATTTTGAC+GGG - chr2.1:70516607-70516626 MS.gene002508:intron 45.0%
!!! AATAGATTTTTTTAATAAAA+TGG - chr2.1:70516233-70516252 MS.gene002508:intron 5.0%
ACCATTGAATGCCCCTCATG+CGG - chr2.1:70515254-70515273 MS.gene002508:CDS 50.0%
CAGACACAGCCTAGACAACA+TGG - chr2.1:70517384-70517403 MS.gene002508:intron 50.0%
CATGTTGTCTAGGCTGTGTC+TGG + chr2.1:70517386-70517405 None:intergenic 50.0%
CCCCAACAATGTAGCTCTTG+TGG - chr2.1:70517485-70517504 MS.gene002508:intron 50.0%
GGATGCCCCTATTGAGAGTT+TGG + chr2.1:70516598-70516617 None:intergenic 50.0%
GGGTCAAATTTCACTCCAGC+TGG + chr2.1:70515560-70515579 None:intergenic 50.0%
TGCCCCTATTGAGAGTTTGG+TGG + chr2.1:70516595-70516614 None:intergenic 50.0%
!!! AGGGGCATCCTATTTTGACG+GGG - chr2.1:70516608-70516627 MS.gene002508:intron 50.0%
ACACACCCAGCACAACTACC+AGG - chr2.1:70515698-70515717 MS.gene002508:CDS 55.0%
CTAAGGCCAGTCTCAAGCTC+TGG - chr2.1:70515356-70515375 MS.gene002508:CDS 55.0%
TTCACTCCAGCTGGTAACCC+CGG + chr2.1:70515551-70515570 None:intergenic 55.0%
!!! GGGGCATCCTATTTTGACGG+GGG - chr2.1:70516609-70516628 MS.gene002508:intron 55.0%
GAATTGCCGGGGTTACCAGC+TGG - chr2.1:70515542-70515561 MS.gene002508:CDS 60.0%
!! GCCGCATGAGGGGCATTCAA+TGG + chr2.1:70515258-70515277 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 70515170 70517674 70515170 ID=MS.gene002508
chr2.1 mRNA 70515170 70517674 70515170 ID=MS.gene002508.t1;Parent=MS.gene002508
chr2.1 exon 70517543 70517674 70517543 ID=MS.gene002508.t1.exon1;Parent=MS.gene002508.t1
chr2.1 CDS 70517543 70517674 70517543 ID=cds.MS.gene002508.t1;Parent=MS.gene002508.t1
chr2.1 exon 70517125 70517314 70517125 ID=MS.gene002508.t1.exon2;Parent=MS.gene002508.t1
chr2.1 CDS 70517125 70517314 70517125 ID=cds.MS.gene002508.t1;Parent=MS.gene002508.t1
chr2.1 exon 70515170 70515771 70515170 ID=MS.gene002508.t1.exon3;Parent=MS.gene002508.t1
chr2.1 CDS 70515170 70515771 70515170 ID=cds.MS.gene002508.t1;Parent=MS.gene002508.t1
Gene Sequence

>MS.gene002508

ATGGCATGGTGCAATGATAAAGATAACAACAACTCTGATGTCACTAATAACATAGAGCTCAATGAAGAAATTGATCAAAATCAAACCATTGAATGCCCCTCATGCGGCCATAATATTGAAGTAAAAAATCAGGTACTAATCAATGGTTTTATTTGTTTTACTTATTTAGTTTGATCTTAAATCTTGCTAAGGCCAGTCTCAAGCTCTGGTAATTAAAAGGACTCAACAACATAAAACTTTGTCGAATCTCTACGACTCTGGTTAAATTTGATGTTAGTTTTATTTTGTTTGTTTATGCACCGATATTAATTCCTTTAGTTTATTAATTTGTGTGTAAATTTGATGATTTTTGATACATAGGGTGGAGTTAATGAATTGCCGGGGTTACCAGCTGGAGTGAAATTTGACCCAAATGATGTAGAAGTACTAGAGCATTTGGAGGCAAAAGTGATGTCTGATGTTCGCAAGATTCATCCACTTATTGATGAGTTCATACCAACGCTTCAAGGAGATAATGGAATTTGTTATACACACCCAGCACAACTACCAGGTTTTTACATTTAATTTAATTTATTTTTTAATTAACATAATTTAGAGATTTGGAATACCGTTTGATGCATTGCATGTGTTAATTATTGGGAGAGACGATCTTGTTCTGCACGGTACCGCAGTCCGCATGCATCAAATTAATTAACTAATTAATGTTTTACAATTTAATAGTTTTTTTAATTGAAATAGATTTTAATTATAAGGCGGTTTGAGCATGACCACATAACATTTATTCTCTCCACATTTAGATCTCATAAATTTATAGAAGTAGTTCTTTACTTAGGATGCGTTTGTTTCAGCTTTAAAAAAAAATAGATTTTGTGTCAAGAGAATCTAGAGTTTTGTTTTTAGAGATTTTTAAAAAAATCTGAAATTATTTGTGTTTGCCTACTATCCATAAAAATCCATTTTTAAAAAAAATGAGTTCTAACATGCACATGTGTTATCTCCTTGTAGTTGAAAAAAATAGATTTTGAGAAAAGCTAATCCTAATAGCTTTTCATTTTAGGATCAAAATAGATTTTTTTAATAAAATGGTTTTTCTAAAAATCCTAAACAAACACTTAAAAATGAAAAAAGTGATTTTTTTTTAAGGGAAAAAATAGATTTTTTTTGAAAAAAATCTGAAACAAACGGGCCCTTAGTCCTTACAATTGCAAGCAAAGAAAATTATTTGTCAATCGGGGTTGAGTTGAGTCTATCCCTTTTTATTAACTTATGATAATTATTTTTTGTGAATTGTGGAAAACCATAATAAAAAGAAAGTTAATGTCCAGCCTAGAGTGTGTAATTTTCAGGCATCTCTTTCATATAACCAACTCGTTGAAGTGTGTTATAAGAAACCAATGAATGCTTGAATTGGCAATGCAATGACCACCAAACTCTCAATAGGGGCATCCTATTTTGACGGGGGCTTTTTCAACATACTGTATGATATAACTAATAAGCAGATTTTTTTAGATTTAACTCCAAAACATCAATAGCAATTTGAAATTGAGCCTAAGTAATTTGTTACTGTAACATTAGGTTAATTGTTAATGAAGTTAAAGACAATTAAAAATTGTTCCTTAAGTTTTGGAAAAGCAAGTACCTTTTTTTTTTTTTTTTTGTGTTGGGATGTTTACACTCTTGGTTTGACACAGATTGAGTCTAATAAAAACTCCTTTTGATTAATAATGTATCACCCAATTCTATTTCTTTTGGTACATTGCAAAGAACAAACAGATAGCAATTTATCAGTATATTGATATATAAATATATATGTCAAATTAGAGATGAAGGTAAAACGACACTTATTTTAAAAGAGACGGAATATGCAAGAAGTTGATATAAATTGTTACCTAAAATGTTGCAGGAGTTAGCAAAGATGGTCAAATTCGCCACTTTTTTCATAGGCCTTCAAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACACTGATGAAGAAGGAATTGAAACAAGATGGCACAAAACTGGGAAAACTAGAGCAATTTTTTCCAATGGTGTTGTGAAGGGATTTAAGAAGATACTTGTACTCTACACCAACTATTGCAAAGAAGGAAAACCAGAGAAGACTAACTGGGTGATGCATCAATACCATCTTGGTATGAATGAAGAAGAAAGAGATGGAGAATTTGTTGCTTCAAAGATCTTCTACCAGACACAGCCTAGACAACATGGTAATTCCATTAACAACGTAAAAGATTCGTATGAAAAAATAATCGACAAAGGAAGTGGCCATGATAATAACAGTGCAGCCCCCAACAATGTAGCTCTTGTGGAATGCTACAATGCTTGTTATACAAATTATGACCATATGCATGTTGGTCATAGTAGGGAAAGCACTCCACAACTGATTATACCAAACATGTCTGTTCAAAGTGATGGAACTATTATTCGCTTATCAATGGATCATGCAAACAAAGTAAGAGTACTGGAGAGAAAGTAA
Protein sequence

>MS.gene002508.t1

MAWCNDKDNNNSDVTNNIELNEEIDQNQTIECPSCGHNIEVKNQGGVNELPGLPAGVKFDPNDVEVLEHLEAKVMSDVRKIHPLIDEFIPTLQGDNGICYTHPAQLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGIETRWHKTGKTRAIFSNGVVKGFKKILVLYTNYCKEGKPEKTNWVMHQYHLGMNEEERDGEFVASKIFYQTQPRQHGNSINNVKDSYEKIIDKGSGHDNNSAAPNNVALVECYNACYTNYDHMHVGHSRESTPQLIIPNMSVQSDGTIIRLSMDHANKVRVLERK