AlfalfaGEDB | MS.gene002567

M. sativa cultivar XinJiangDaYe / MS.gene002567

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002567.t1	XP_003593769.1	96.3	216	8	0	1	216	1	216	1.20E-108	402.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002567.t1	Q9S7Y1	47.1	136	64	4	56	184	164	298	2.4e-20	100.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002567.t1	G7ILJ0	96.3	216	8	0	1	216	1	216	8.8e-109	402.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene002567.t1	TF	bHLH

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002567.t1	MTR_2g015890	96.296	216	8	0	1	216	1	216	1.36e-154	427
MS.gene002567.t1	MTR_2g015890	81.250	256	8	1	1	216	1	256	1.30e-145	406
MS.gene002567.t1	MTR_2g015890	93.220	118	8	0	99	216	1	118	2.84e-77	228
MS.gene002567.t1	MTR_2g015890	69.620	158	8	1	99	216	1	158	1.21e-68	207
MS.gene002567.t1	MTR_4g087920	56.354	181	72	3	11	184	19	199	4.96e-47	156
MS.gene002567.t1	MTR_4g079760	49.367	158	76	2	19	173	21	177	6.83e-38	132
MS.gene002567.t1	MTR_2g091190	50.000	150	70	2	29	175	23	170	1.64e-35	125
MS.gene002567.t1	MTR_3g070970	43.284	134	60	3	67	184	73	206	3.01e-23	94.4
MS.gene002567.t1	MTR_1g093750	49.153	118	53	1	63	173	154	271	6.08e-22	92.0
MS.gene002567.t1	MTR_5g032375	36.508	126	66	3	56	168	34	158	7.41e-14	68.2

Showing 1 to 10 of 11 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002567.t1	AT3G56770	47.458	118	56	3	62	174	40	156	2.37e-26	101
MS.gene002567.t1	AT2G40200	45.600	125	59	2	69	184	65	189	4.25e-26	101
MS.gene002567.t1	AT1G68810	47.059	136	64	4	56	184	164	298	2.18e-22	94.0
MS.gene002567.t1	AT2G41130	36.686	169	96	3	17	174	11	179	3.35e-20	85.9
MS.gene002567.t1	AT3G25710	41.791	134	72	3	56	184	122	254	3.04e-19	84.7
MS.gene002567.t1	AT4G38070	32.710	107	68	2	66	172	91	193	4.73e-12	63.9

Showing 1 to 6 of 6 entries

Previous1Next

Find 37 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTGAACCATGTGAAAA+TGG	0.387199	2.1:+69680304	MS.gene002567:CDS
AACTGAGTTCTGTACTGGAA+AGG	0.553572	2.1:+69680545	MS.gene002567:CDS
AAGAGAAGAAACAGAATTAA+TGG	0.350077	2.1:+69678712	MS.gene002567:CDS
AAGTCCCCTCCAATAATTAA+TGG	0.304566	2.1:+69678622	MS.gene002567:CDS
AATGCAGATGAAGCAAGTAA+AGG	0.565648	2.1:+69680250	MS.gene002567:CDS
AATGCCACTTCATATAGATT+TGG	0.335342	2.1:+69678520	MS.gene002567:CDS
ACTGAGTTCTGTACTGGAAA+GGG	0.489265	2.1:+69680546	MS.gene002567:CDS
ACTTGTTCCCTCCTCTCCAA+AGG	0.568287	2.1:+69678756	MS.gene002567:CDS
AGAATCATAGGGAAGCAGAG+AGG	0.725124	2.1:+69678689	MS.gene002567:CDS
AGATTATTATACCTTTGGAG+AGG	0.615783	2.1:-69678767	None:intergenic

Showing 1 to 10 of 37 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTGAACCATGTGAAAA+TGG	+	chr2.1:69680304-69680323	MS.gene002567:CDS	30.0%
AACTTCAACTACAATTGGTA+AGG	+	chr2.1:69680407-69680426	MS.gene002567:intron	30.0%
AAGGGAAGAAATATCAACTT+TGG	+	chr2.1:69680426-69680445	MS.gene002567:intron	30.0%
AAGTTCAATTGGTAAACCAT+CGG	-	chr2.1:69678923-69678942	None:intergenic	30.0%
ACACAATGATCGAATATGAT+TGG	-	chr2.1:69678822-69678841	None:intergenic	30.0%
ACTTCAACTACAATTGGTAA+GGG	+	chr2.1:69680408-69680427	MS.gene002567:intron	30.0%
AGGGAAGAAATATCAACTTT+GGG	+	chr2.1:69680427-69680446	MS.gene002567:intron	30.0%
ATTGAAATTCATGCAGCATT+TGG	-	chr2.1:69679289-69679308	None:intergenic	30.0%
ATTGATGGAAATACAAGCTA+TGG	+	chr2.1:69679233-69679252	MS.gene002567:intron	30.0%
GTTTGTATCAACAAACTCAT+TGG	+	chr2.1:69678570-69678589	MS.gene002567:CDS	30.0%

Showing 1 to 10 of 116 entries

Previous1 2 3 4 5…12Next

Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	69678484	69680669	69678484	ID=MS.gene002567
chr2.1	mRNA	69678484	69680669	69678484	ID=MS.gene002567.t1;Parent=MS.gene002567
chr2.1	exon	69678484	69678777	69678484	ID=MS.gene002567.t1.exon1;Parent=MS.gene002567.t1
chr2.1	CDS	69678484	69678777	69678484	ID=cds.MS.gene002567.t1;Parent=MS.gene002567.t1
chr2.1	exon	69680193	69680423	69680193	ID=MS.gene002567.t1.exon2;Parent=MS.gene002567.t1
chr2.1	CDS	69680193	69680423	69680193	ID=cds.MS.gene002567.t1;Parent=MS.gene002567.t1
chr2.1	exon	69680544	69680669	69680544	ID=MS.gene002567.t1.exon3;Parent=MS.gene002567.t1
chr2.1	CDS	69680544	69680669	69680544	ID=cds.MS.gene002567.t1;Parent=MS.gene002567.t1

Gene Sequence

>MS.gene002567

ATGGATTCTAGCTCTGATATTTCGAGGATACTATTCAATGCCACTTCATATAGATTTGGTGCTTCAAATGAGACTTCAAGAGGTGGGTTTGTATCAACAAACTCATTGGTTTTGGATAGTGAGAAAGGAGAACTAGTGAAGTCCCCTCCAATAATTAATGGAGAGAAAAAGATTTGTGATGCTAACAAAACTTTAGTGGCTCTGAAGAATCATAGGGAAGCAGAGAGGAAGAGAAGAAACAGAATTAATGGTCATCTTGCTAAACTCCGTGCACTTGTTCCCTCCTCTCCAAAGGTATAATAATCTTCCTTTCTTTTCGTATTTTTTATATGCATCCAATCATATTCGATCATTGTGTCACTTCGTTATATTTGTTTTTAAAATATCTCTTTAAATATCTTTGTGGTGAAATGTGATTTTTTATAAACATGTTTTACCGATGGTTTACCAATTGAACTTTTTTACAGTTTTATTTTGATTGTATAATTGTTTTAATATTGTTATCTGATTTTAAAAAGGCTAGCGGTGATACTTACAATAAGTGCTGAGAAGCAAGGAATTGCAGATACAAACTTGCACCCGAGCATATCAAATGTCTCTGTAACATTTTATCATCTAAGCTCTACTTACATGACATTGTTTTAGCATGTTTAAAATAATCAACATATATGATTCTGATTTAATTGCTCTGACTGAAAAAATACATTTACTTAGGTAACATTTAGAAATTTAGAAGCTGAAGTTTGAAGATTGATGGAAATACAAGCTATGGGGCAGAACTGGTAGTACACGATATCATCACCCAAATGCTGCATGAATTTCAATGTTCAATTGATTCATGTTTCTTGATTTACTCATGATTCATGCGTTCATTCATTTTGTACACCAATTAAGTTGCAATTAGGAATTTTGATTAAAATAAAACATGAGTAATCAATTGTACTAGTATACTACTACTATATCATAACAACAATATCAAAATCATTTCAGCAAAAAATGACCATCACCAACACATTCTGAGAGTTAAAGTTAAACATTATAATTAAATTAAGGGTCCTTGACTGGTCAAATGTATATGGGAACCGCTAAAGTCAACTATATAAGGTTGTGATAGTACTATAATGTAACATCATATTGGCTAGTTTATTCTTTTTTGCAGATTTATCTTCGATAGTCCCAAACTAAGGTTGTTTCATTTATTATTCAATATAATAATAAAGAAATAACAAATGATTCTTAGTTGTGGGCCCACACTCCACATCACCAGCTGAATATTCTGGCCCTCAACAAATCATTCTTTCTGAATGTTTTTTATTAATAGCTGTCAACAGCTGGTTAAGCTATTCAAATAATTTATGCAATTTTACTACTAGTATTAATTTATTTGTTGTGGTGGGACTAAGTCTAGAAAATAACTTTATCTGACCAATGAAGGAATTAGGCAACCAACCATTTAATAATCCTTAAAAAATAAATAAATAAGGTAGGACATGCTACCTATGACCTACGCTTTGAATGAAAGGCGTATCTGGTTTCAAATATGCGTTAGGGTTTAATATCGGCATACATGATTACATTTACTCAATTCTAATTTATTATATTATTAATGATGTCTATGTGTCATTTACGATGTTGATTTCGGTGTCAATGTTTCATAGTTTCACATATGTACATACTGTTATTAATGGTAGCTGATGGTATTCTTATAGATGGACAAAGCAACTTTACTAGCTGAGGTTATTAGGCAAGTGAAGTATTTGAAAAAAAATGCAGATGAAGCAAGTAAAGGTTATTCAATTCCAACAGATGATGATGAAGTGAAAGTTGAACCATGTGAAAATGGTGGATCATTTCTTTACAAAGCATCTATCAGCTGCGATTATCGACCAGAACTTCTAACTGATCTAAGACAAACTCTTGATAAACTTCAACTACAATTGGTAAGGGAAGAAATATCAACTTTGGGAGACAGGGTTAAGAATGAATTTGTCTACACATGTTGTAATGTAGACATTTATGATATTGAACAATGTCAACTTATTGGAAATAATGTTCACCAGGAACTGAGTTCTGTACTGGAAAGGGTTTCTACCTCGATGGATTACTCGTTAAGAGCACCACGTCTTTGCAAACAGATGCAGCAGACATCTACTTTGTCATGCAACCATGAGTTTTGCTCTTGTTGA

Protein sequence

>MS.gene002567.t1

MDSSSDISRILFNATSYRFGASNETSRGGFVSTNSLVLDSEKGELVKSPPIINGEKKICDANKTLVALKNHREAERKRRNRINGHLAKLRALVPSSPKMDKATLLAEVIRQVKYLKKNADEASKGYSIPTDDDEVKVEPCENGGSFLYKASISCDYRPELLTDLRQTLDKLQLQLELSSVLERVSTSMDYSLRAPRLCKQMQQTSTLSCNHEFCSC