AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002579

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002579.t1 MTR_2g016140 76.038 313 7 2 1 245 1 313 2.24e-165 461
MS.gene002579.t1 MTR_2g016140 94.624 186 10 0 1 186 1 186 1.52e-132 377
MS.gene002579.t1 MTR_2g016140 92.537 67 5 0 182 248 250 316 1.21e-35 129
MS.gene002579.t1 MTR_4g079960 50.000 292 88 6 11 249 19 305 1.12e-78 240
MS.gene002579.t1 MTR_4g079960 51.064 282 79 7 19 246 27 303 1.23e-77 237
MS.gene002579.t1 MTR_4g079960 50.714 280 80 6 19 245 27 301 2.46e-77 237
MS.gene002579.t1 MTR_8g022290 40.794 277 109 6 19 241 64 339 4.89e-49 166
MS.gene002579.t1 MTR_2g092960 44.776 134 70 3 11 144 34 163 9.20e-29 115
MS.gene002579.t1 MTR_6g486270 28.384 229 139 7 23 236 130 348 3.82e-26 105
MS.gene002579.t1 MTR_2g102227 32.018 228 134 6 23 237 274 493 1.85e-24 102
MS.gene002579.t1 MTR_1g061600 37.624 101 57 3 23 122 133 228 4.72e-17 80.5
MS.gene002579.t1 MTR_1g037650 37.755 98 54 2 18 115 33 123 3.36e-14 69.3
MS.gene002579.t1 MTR_3g014280 37.755 98 54 2 18 115 33 123 1.12e-13 70.1
MS.gene002579.t1 MTR_5g017500 23.529 221 134 8 23 232 22 218 3.07e-12 64.7
MS.gene002579.t1 MTR_4g117990 31.915 94 62 2 22 114 43 135 5.68e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002579.t1 AT3G58630 41.615 322 114 8 3 258 2 315 7.62e-64 202
MS.gene002579.t1 AT3G58630 42.532 308 104 7 3 245 2 301 8.73e-64 202
MS.gene002579.t1 AT5G05550 43.933 239 107 6 19 245 20 243 2.44e-50 166
MS.gene002579.t1 AT5G05550 43.933 239 107 6 19 245 20 243 3.05e-50 165
MS.gene002579.t1 AT5G05550 44.635 233 102 6 19 239 20 237 3.13e-49 162
MS.gene002579.t1 AT3G11100 41.250 240 117 5 19 245 18 246 2.80e-47 157
MS.gene002579.t1 AT3G14180 50.000 126 58 3 19 142 80 202 3.46e-35 130
MS.gene002579.t1 AT3G14180 51.852 54 26 0 184 237 356 409 4.93e-12 65.9
MS.gene002579.t1 AT3G24490 30.317 221 139 4 23 236 90 302 1.87e-27 108
MS.gene002579.t1 AT1G54060 51.020 98 44 2 19 116 90 183 1.06e-21 93.2
MS.gene002579.t1 AT3G10030 35.433 127 74 3 23 145 161 283 3.20e-20 90.1
MS.gene002579.t1 AT3G10030 35.433 127 74 3 23 145 161 283 3.45e-20 89.7
MS.gene002579.t1 AT3G54390 26.190 294 146 11 5 248 16 288 2.19e-19 85.9
MS.gene002579.t1 AT3G54390 26.190 294 146 11 5 248 32 304 3.41e-19 85.5
MS.gene002579.t1 AT2G44730 32.979 94 61 2 22 114 63 155 3.65e-11 62.8

Find 65 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGAGGATGCAGATGTTTA+TGG 0.218617 2.1:+69538209 MS.gene002579:CDS
CATCGGAAATTTGCTAATTC+TGG 0.236718 2.1:+69537781 MS.gene002579:CDS
GTTATGCATGATAGGGCTTT+TGG 0.280310 2.1:+69538426 MS.gene002579:intron
ACTGAGGCAGATGGTGGATT+TGG 0.320650 2.1:+69538149 MS.gene002579:CDS
AACTTCTTAGCACTGAAATT+AGG 0.324747 2.1:-69537697 None:intergenic
TTCCACTCTCGTCGATGCAT+GGG 0.378747 2.1:+69537432 MS.gene002579:CDS
GTCGAATGTACCGCAATTGC+AGG 0.389100 2.1:-69537817 None:intergenic
GACCAACAATCCTCGCGAAC+GGG 0.390355 2.1:-69537397 None:intergenic
CTTCCACTCTCGTCGATGCA+TGG 0.395037 2.1:+69537431 MS.gene002579:CDS
GCGAAGGCGATAGAGAGTTT+TGG 0.411580 2.1:+69538096 MS.gene002579:intron
ATTAAGCGTGGAAAACCATC+TGG 0.413416 2.1:+69538255 MS.gene002579:CDS
ATCAATTTCTTCACCGGTGG+CGG 0.426236 2.1:+69537720 MS.gene002579:CDS
TTCTGCTGTGGCTGCGGCTA+CGG 0.429255 2.1:+69537870 MS.gene002579:CDS
AAAGAATCGTGGTGAAAATC+CGG 0.442007 2.1:-69537352 None:intergenic
GGAAAACCATCTGGGTCTAA+TGG 0.443061 2.1:+69538264 MS.gene002579:CDS
GTAATCTTCGTCAGAAAGAT+TGG 0.446554 2.1:+69537482 MS.gene002579:CDS
TCCCCGTTCGCGAGGATTGT+TGG 0.451755 2.1:+69537395 MS.gene002579:CDS
GAAGTTATCAATTTCTTCAC+CGG 0.471334 2.1:+69537714 MS.gene002579:CDS
GATGCTGTTAACGCTCTTCA+TGG 0.472381 2.1:+69537517 MS.gene002579:CDS
GCTAGGGTTACGGAATCTAA+TGG 0.474097 2.1:+69537622 MS.gene002579:CDS
TGTGGCTGCGGCTACGGCTA+CGG 0.482385 2.1:+69537876 MS.gene002579:CDS
GGCGGTGACACCGTCGCCGC+CGG 0.485160 2.1:+69537738 MS.gene002579:CDS
TATGGATACTCAAGTTCAGC+TGG 0.498348 2.1:+69538227 MS.gene002579:CDS
GGCGACGGTGTCACCGCCAC+CGG 0.505328 2.1:-69537733 None:intergenic
CGGAAATTTGCTAATTCTGG+TGG 0.506455 2.1:+69537784 MS.gene002579:CDS
CTCTTCCGTTGATTCCTCAT+CGG 0.506683 2.1:+69537764 MS.gene002579:CDS
CCTTGAGACCCACTGTCCTC+AGG 0.511788 2.1:-69538450 None:intergenic
GAATTATTCTGCTGTGGCTG+CGG 0.512580 2.1:+69537864 MS.gene002579:CDS
GGAAGAGCCACCGGCGGCGA+CGG 0.520111 2.1:-69537748 None:intergenic
CCTGAGGACAGTGGGTCTCA+AGG 0.530873 2.1:+69538450 MS.gene002579:CDS
TGGTGAAATGTATGAGAGAG+TGG 0.540008 2.1:+69538116 MS.gene002579:CDS
CTGAGGACAGTGGGTCTCAA+GGG 0.546675 2.1:+69538451 MS.gene002579:CDS
GGAATCAACGGAAGAGCCAC+CGG 0.563599 2.1:-69537757 None:intergenic
ACAATCCTCGCGAACGGGGA+CGG 0.571999 2.1:-69537392 None:intergenic
TCGTCGATGCATGGGGTCGT+CGG 0.574131 2.1:+69537440 MS.gene002579:CDS
TGACCAACAATCCTCGCGAA+CGG 0.577799 2.1:-69537398 None:intergenic
CTAAAGATCTTGAAGTGCAG+AGG 0.579375 2.1:+69538193 MS.gene002579:CDS
CAGTGGCGTTACCGCAGAAG+AGG 0.580552 2.1:+69537842 MS.gene002579:CDS
GGTGACACCGTCGCCGCCGG+TGG 0.582058 2.1:+69537741 MS.gene002579:CDS
ATCTCACCATTAGACCCAGA+TGG 0.584691 2.1:-69538270 None:intergenic
TTATTCATCACCTGCAATTG+CGG 0.591019 2.1:+69537807 MS.gene002579:CDS
CGAACGGGGACGGTGCGTGA+CGG 0.602447 2.1:-69537382 None:intergenic
TGGTGGATTTGGAGAAACAA+AGG 0.604782 2.1:+69538160 MS.gene002579:CDS
ACGGGGACGGTGCGTGACGG+TGG 0.605580 2.1:-69537379 None:intergenic
ACCCCATGCATCGACGAGAG+TGG 0.606737 2.1:-69537434 None:intergenic
ACGCACCGTCCCCGTTCGCG+AGG 0.609985 2.1:+69537387 MS.gene002579:CDS
GAAGAGGAATTATTCTGCTG+TGG 0.613185 2.1:+69537858 MS.gene002579:CDS
TCGTGGTGAAAATCCGGCAT+CGG 0.613818 2.1:-69537346 None:intergenic
ACAGAAACTGAGGCAGATGG+TGG 0.614677 2.1:+69538143 MS.gene002579:CDS
AATTTCCGATGAGGAATCAA+CGG 0.616061 2.1:-69537769 None:intergenic
GTTATCAATTTCTTCACCGG+TGG 0.628483 2.1:+69537717 MS.gene002579:CDS
GAGTGGAAGAACAGAAACTG+AGG 0.631673 2.1:+69538133 MS.gene002579:CDS
AGAACAGAAACTGAGGCAGA+TGG 0.635950 2.1:+69538140 MS.gene002579:CDS
TCCACTCTCGTCGATGCATG+GGG 0.638750 2.1:+69537433 MS.gene002579:CDS
ATCAACGGAAGAGCCACCGG+CGG 0.641820 2.1:-69537754 None:intergenic
GCAGAATAATTCCTCTTCTG+CGG 0.643324 2.1:-69537853 None:intergenic
GAATTAGCAAATTTCCGATG+AGG 0.643473 2.1:-69537778 None:intergenic
TTAAGCGTGGAAAACCATCT+GGG 0.647441 2.1:+69538256 MS.gene002579:CDS
TGCGGTACATTCGACCGCAG+TGG 0.654902 2.1:+69537825 MS.gene002579:CDS
ACCAACAATCCTCGCGAACG+GGG 0.660501 2.1:-69537396 None:intergenic
CTTTCTGACGAAGATTACCA+CGG 0.666897 2.1:-69537477 None:intergenic
CGGTATCTTGAACTCAACCG+TGG 0.727584 2.1:+69537460 MS.gene002579:CDS
CTTCTGCGGTAACGCCACTG+CGG 0.733396 2.1:-69537839 None:intergenic
CAGCTGGAGAGAATTAAGCG+TGG 0.736726 2.1:+69538243 MS.gene002579:CDS
ACGGTGGTGTGAAAGAATCG+TGG 0.749435 2.1:-69537363 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACGATTAAGAAAAAGTATA+AGG + chr2.1:69537591-69537610 MS.gene002579:CDS 20.0%
!!! TTTGTTTTTTAATGAACGAA+TGG + chr2.1:69538394-69538413 MS.gene002579:intron 20.0%
! TATCAAATCACAAGCTAAAA+GGG - chr2.1:69538338-69538357 None:intergenic 25.0%
! TTATACTGTTATGCATGATA+GGG + chr2.1:69538419-69538438 MS.gene002579:intron 25.0%
! TTATCAAATCACAAGCTAAA+AGG - chr2.1:69538339-69538358 None:intergenic 25.0%
!!! ATGGTGTTTTGAATTCTAAT+TGG + chr2.1:69537641-69537660 MS.gene002579:CDS 25.0%
AAAACAAAAACTGAGCAATG+CGG - chr2.1:69538376-69538395 None:intergenic 30.0%
ACATCTAACCGTTCAAAAAA+AGG - chr2.1:69537667-69537686 None:intergenic 30.0%
AGTATAAGGTTGAAAAAGCT+AGG + chr2.1:69537605-69537624 MS.gene002579:CDS 30.0%
ATCAAATCACAAGCTAAAAG+GGG - chr2.1:69538337-69538356 None:intergenic 30.0%
GAAGTTATCAATTTCTTCAC+CGG + chr2.1:69537714-69537733 MS.gene002579:CDS 30.0%
GTATAAGGTTGAAAAAGCTA+GGG + chr2.1:69537606-69537625 MS.gene002579:CDS 30.0%
GTTATACTGTTATGCATGAT+AGG + chr2.1:69538418-69538437 MS.gene002579:intron 30.0%
! AACTTCTTAGCACTGAAATT+AGG - chr2.1:69537700-69537719 None:intergenic 30.0%
!! TTTTAGGAGGAATTATTCTG+CGG + chr2.1:69537915-69537934 MS.gene002579:intron 30.0%
!!! CTAATTGGCCTTTTTTTGAA+CGG + chr2.1:69537656-69537675 MS.gene002579:CDS 30.0%
!!! TTATGGATGATGGGTATTTT+AGG + chr2.1:69537899-69537918 MS.gene002579:intron 30.0%
AAAGAATCGTGGTGAAAATC+CGG - chr2.1:69537355-69537374 None:intergenic 35.0%
AATTTCCGATGAGGAATCAA+CGG - chr2.1:69537772-69537791 None:intergenic 35.0%
GAATTAGCAAATTTCCGATG+AGG - chr2.1:69537781-69537800 None:intergenic 35.0%
GTAATCTTCGTCAGAAAGAT+TGG + chr2.1:69537482-69537501 MS.gene002579:CDS 35.0%
TTATTCATCACCTGCAATTG+CGG + chr2.1:69537807-69537826 MS.gene002579:CDS 35.0%
!! CATCGGAAATTTGCTAATTC+TGG + chr2.1:69537781-69537800 MS.gene002579:CDS 35.0%
!!! GAACGGTTAGATGTTTTGAT+TGG + chr2.1:69537673-69537692 MS.gene002579:CDS 35.0%
AAGTGGATGAAGGGGATAAA+GGG + chr2.1:69538052-69538071 MS.gene002579:intron 40.0%
ATTAAGCGTGGAAAACCATC+TGG + chr2.1:69538255-69538274 MS.gene002579:CDS 40.0%
CTAAAGATCTTGAAGTGCAG+AGG + chr2.1:69538193-69538212 MS.gene002579:CDS 40.0%
CTTTCTGACGAAGATTACCA+CGG - chr2.1:69537480-69537499 None:intergenic 40.0%
GAAGAGGAATTATTCTGCTG+TGG + chr2.1:69537858-69537877 MS.gene002579:CDS 40.0%
GCAGAATAATTCCTCTTCTG+CGG - chr2.1:69537856-69537875 None:intergenic 40.0%
GGTTGAAAAAGCTAGGGTTA+CGG + chr2.1:69537612-69537631 MS.gene002579:CDS 40.0%
GTTATCAATTTCTTCACCGG+TGG + chr2.1:69537717-69537736 MS.gene002579:CDS 40.0%
TATGGATACTCAAGTTCAGC+TGG + chr2.1:69538227-69538246 MS.gene002579:CDS 40.0%
TGGTGAAATGTATGAGAGAG+TGG + chr2.1:69538116-69538135 MS.gene002579:CDS 40.0%
TTAAGCGTGGAAAACCATCT+GGG + chr2.1:69538256-69538275 MS.gene002579:CDS 40.0%
! ATCTGTGCGATGAGTTTTCT+TGG - chr2.1:69537548-69537567 None:intergenic 40.0%
! GTTATGCATGATAGGGCTTT+TGG + chr2.1:69538426-69538445 MS.gene002579:intron 40.0%
!! CGGAAATTTGCTAATTCTGG+TGG + chr2.1:69537784-69537803 MS.gene002579:CDS 40.0%
!! TGGTGGATTTGGAGAAACAA+AGG + chr2.1:69538160-69538179 MS.gene002579:CDS 40.0%
!!! TGGATGATGGGTATTTTAGG+AGG + chr2.1:69537902-69537921 MS.gene002579:intron 40.0%
AAGGGGATAAAGGGAGAGAA+GGG + chr2.1:69538061-69538080 MS.gene002579:intron 45.0%
AGAACAGAAACTGAGGCAGA+TGG + chr2.1:69538140-69538159 MS.gene002579:CDS 45.0%
ATCAATTTCTTCACCGGTGG+CGG + chr2.1:69537720-69537739 MS.gene002579:CDS 45.0%
ATCTCACCATTAGACCCAGA+TGG - chr2.1:69538273-69538292 None:intergenic 45.0%
GAAGTGGATGAAGGGGATAA+AGG + chr2.1:69538051-69538070 MS.gene002579:intron 45.0%
GAATTATTCTGCTGTGGCTG+CGG + chr2.1:69537864-69537883 MS.gene002579:CDS 45.0%
GAGTGGAAGAACAGAAACTG+AGG + chr2.1:69538133-69538152 MS.gene002579:CDS 45.0%
GATGCTGTTAACGCTCTTCA+TGG + chr2.1:69537517-69537536 MS.gene002579:CDS 45.0%
GCAGAGGATGCAGATGTTTA+TGG + chr2.1:69538209-69538228 MS.gene002579:CDS 45.0%
GCTAGGGTTACGGAATCTAA+TGG + chr2.1:69537622-69537641 MS.gene002579:CDS 45.0%
GGAAAACCATCTGGGTCTAA+TGG + chr2.1:69538264-69538283 MS.gene002579:CDS 45.0%
TGGAAGTAGAGGAAGAGGAA+GGG + chr2.1:69538019-69538038 MS.gene002579:intron 45.0%
! AGCTGATGAGGATGATGATG+AGG + chr2.1:69537963-69537982 MS.gene002579:intron 45.0%
! GGATGATGATGAGGATGATG+AGG + chr2.1:69537972-69537991 MS.gene002579:intron 45.0%
! TGATGATGAGGATGATGAGG+TGG + chr2.1:69537975-69537994 MS.gene002579:intron 45.0%
!! CTCTTCCGTTGATTCCTCAT+CGG + chr2.1:69537764-69537783 MS.gene002579:CDS 45.0%
AAGGGAGAGAAGGGATGAAG+AGG + chr2.1:69538070-69538089 MS.gene002579:intron 50.0%
AAGTAGAGGAAGAGGAAGGG+AGG + chr2.1:69538022-69538041 MS.gene002579:intron 50.0%
ACAGAAACTGAGGCAGATGG+TGG + chr2.1:69538143-69538162 MS.gene002579:CDS 50.0%
ACGGCTACGGTTATGGATGA+TGG + chr2.1:69537889-69537908 MS.gene002579:intron 50.0%
ACGGTGGTGTGAAAGAATCG+TGG - chr2.1:69537366-69537385 None:intergenic 50.0%
AGAGGTGGAAGTAGAGGAAG+AGG + chr2.1:69538014-69538033 MS.gene002579:intron 50.0%
AGTAGAGGAAGAGGAAGGGA+GGG + chr2.1:69538023-69538042 MS.gene002579:intron 50.0%
CAGCTGGAGAGAATTAAGCG+TGG + chr2.1:69538243-69538262 MS.gene002579:CDS 50.0%
CGGCTACGGTTATGGATGAT+GGG + chr2.1:69537890-69537909 MS.gene002579:intron 50.0%
CGGTATCTTGAACTCAACCG+TGG + chr2.1:69537460-69537479 MS.gene002579:CDS 50.0%
GAAGGGGATAAAGGGAGAGA+AGG + chr2.1:69538060-69538079 MS.gene002579:intron 50.0%
GAGAGAAGGGATGAAGAGGT+TGG + chr2.1:69538074-69538093 MS.gene002579:intron 50.0%
GTCGAATGTACCGCAATTGC+AGG - chr2.1:69537820-69537839 None:intergenic 50.0%
GTGGAAGTAGAGGAAGAGGA+AGG + chr2.1:69538018-69538037 MS.gene002579:intron 50.0%
TGACCAACAATCCTCGCGAA+CGG - chr2.1:69537401-69537420 None:intergenic 50.0%
TGATGAGGATGATGAGGTGG+AGG + chr2.1:69537978-69537997 MS.gene002579:intron 50.0%
TGATGAGGTGGAGGAAGTTG+AGG + chr2.1:69537987-69538006 MS.gene002579:intron 50.0%
TTCCACTCTCGTCGATGCAT+GGG + chr2.1:69537432-69537451 MS.gene002579:CDS 50.0%
! CTTTTGGACCTGAGGACAGT+GGG + chr2.1:69538442-69538461 MS.gene002579:CDS 50.0%
! GCGAAGGCGATAGAGAGTTT+TGG + chr2.1:69538096-69538115 MS.gene002579:intron 50.0%
! TGATAGGGCTTTTGGACCTG+AGG + chr2.1:69538434-69538453 MS.gene002579:intron 50.0%
!! ACTGAGGCAGATGGTGGATT+TGG + chr2.1:69538149-69538168 MS.gene002579:CDS 50.0%
ACCAACAATCCTCGCGAACG+GGG - chr2.1:69537399-69537418 None:intergenic 55.0%
AGGGATGAAGAGGTTGGCGA+AGG + chr2.1:69538080-69538099 MS.gene002579:intron 55.0%
AGGGGGAGTGAAGTGGATGA+AGG + chr2.1:69538042-69538061 MS.gene002579:intron 55.0%
CTGAGGACAGTGGGTCTCAA+GGG + chr2.1:69538451-69538470 MS.gene002579:CDS 55.0%
CTTCCACTCTCGTCGATGCA+TGG + chr2.1:69537431-69537450 MS.gene002579:CDS 55.0%
GACCAACAATCCTCGCGAAC+GGG - chr2.1:69537400-69537419 None:intergenic 55.0%
GGAAGTTGAGGAGGAAGAGG+TGG + chr2.1:69537999-69538018 MS.gene002579:intron 55.0%
GGAATCAACGGAAGAGCCAC+CGG - chr2.1:69537760-69537779 None:intergenic 55.0%
GGAGGAAGAGGTGGAAGTAG+AGG + chr2.1:69538008-69538027 MS.gene002579:intron 55.0%
GGAGGAAGTTGAGGAGGAAG+AGG + chr2.1:69537996-69538015 MS.gene002579:intron 55.0%
GGGGAGTGAAGTGGATGAAG+GGG + chr2.1:69538044-69538063 MS.gene002579:intron 55.0%
GGGGGAGTGAAGTGGATGAA+GGG + chr2.1:69538043-69538062 MS.gene002579:intron 55.0%
GTAGAGGAAGAGGAAGGGAG+GGG + chr2.1:69538024-69538043 MS.gene002579:intron 55.0%
TAGAGGAAGAGGAAGGGAGG+GGG + chr2.1:69538025-69538044 MS.gene002579:intron 55.0%
TCCACTCTCGTCGATGCATG+GGG + chr2.1:69537433-69537452 MS.gene002579:CDS 55.0%
TGAGGTGGAGGAAGTTGAGG+AGG + chr2.1:69537990-69538009 MS.gene002579:intron 55.0%
! GCTTTTGGACCTGAGGACAG+TGG + chr2.1:69538441-69538460 MS.gene002579:CDS 55.0%
ACAATCCTCGCGAACGGGGA+CGG - chr2.1:69537395-69537414 None:intergenic 60.0%
ATCAACGGAAGAGCCACCGG+CGG - chr2.1:69537757-69537776 None:intergenic 60.0%
ATCAGCTTCCGCAGCAGCAG+CGG - chr2.1:69537950-69537969 None:intergenic 60.0%
CAGTGGCGTTACCGCAGAAG+AGG + chr2.1:69537842-69537861 MS.gene002579:CDS 60.0%
CCTGAGGACAGTGGGTCTCA+AGG + chr2.1:69538450-69538469 MS.gene002579:CDS 60.0%
CCTTGAGACCCACTGTCCTC+AGG - chr2.1:69538453-69538472 None:intergenic 60.0%
CTTCTGCGGTAACGCCACTG+CGG - chr2.1:69537842-69537861 None:intergenic 60.0%
TCCCCGTTCGCGAGGATTGT+TGG + chr2.1:69537395-69537414 MS.gene002579:CDS 60.0%
TCGTCGATGCATGGGGTCGT+CGG + chr2.1:69537440-69537459 MS.gene002579:CDS 60.0%
TGCGGCTACGGCTACGGTTA+TGG + chr2.1:69537882-69537901 MS.gene002579:intron 60.0%
TGCGGTACATTCGACCGCAG+TGG + chr2.1:69537825-69537844 MS.gene002579:CDS 60.0%
TGCTGCTGCGGAAGCTGATG+AGG + chr2.1:69537951-69537970 MS.gene002579:intron 60.0%
TTCTGCTGTGGCTGCGGCTA+CGG + chr2.1:69537870-69537889 MS.gene002579:CDS 60.0%
! ACCCCATGCATCGACGAGAG+TGG - chr2.1:69537437-69537456 None:intergenic 60.0%
GGAAGGGAGGGGGAGTGAAG+TGG + chr2.1:69538035-69538054 MS.gene002579:intron 65.0%
TGTGGCTGCGGCTACGGCTA+CGG + chr2.1:69537876-69537895 MS.gene002579:CDS 65.0%
AGCTGCAGCCGCTGCTGCTG+CGG + chr2.1:69537939-69537958 MS.gene002579:intron 70.0%
CGAACGGGGACGGTGCGTGA+CGG - chr2.1:69537385-69537404 None:intergenic 70.0%
ACGCACCGTCCCCGTTCGCG+AGG + chr2.1:69537387-69537406 MS.gene002579:CDS 75.0%
ACGGGGACGGTGCGTGACGG+TGG - chr2.1:69537382-69537401 None:intergenic 75.0%
GGAAGAGCCACCGGCGGCGA+CGG - chr2.1:69537751-69537770 None:intergenic 75.0%
!! GGCGACGGTGTCACCGCCAC+CGG - chr2.1:69537736-69537755 None:intergenic 75.0%
! GGCGGTGACACCGTCGCCGC+CGG + chr2.1:69537738-69537757 MS.gene002579:CDS 80.0%
! GGTGACACCGTCGCCGCCGG+TGG + chr2.1:69537741-69537760 MS.gene002579:CDS 80.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 69537349 69538486 69537349 ID=MS.gene002579
chr2.1 mRNA 69537349 69538486 69537349 ID=MS.gene002579.t1;Parent=MS.gene002579
chr2.1 exon 69537349 69537897 69537349 ID=MS.gene002579.t1.exon1;Parent=MS.gene002579.t1
chr2.1 CDS 69537349 69537897 69537349 ID=cds.MS.gene002579.t1;Parent=MS.gene002579.t1
chr2.1 exon 69538102 69538285 69538102 ID=MS.gene002579.t1.exon2;Parent=MS.gene002579.t1
chr2.1 CDS 69538102 69538285 69538102 ID=cds.MS.gene002579.t1;Parent=MS.gene002579.t1
chr2.1 exon 69538440 69538486 69538440 ID=MS.gene002579.t1.exon3;Parent=MS.gene002579.t1
chr2.1 CDS 69538440 69538486 69538440 ID=cds.MS.gene002579.t1;Parent=MS.gene002579.t1
Gene Sequence

>MS.gene002579

ATGCCGGATTTTCACCACGATTCTTTCACACCACCGTCACGCACCGTCCCCGTTCGCGAGGATTGTTGGTCAGAAGAAGCTTCTTCCACTCTCGTCGATGCATGGGGTCGTCGGTATCTTGAACTCAACCGTGGTAATCTTCGTCAGAAAGATTGGCAAGATGTTGCTGATGCTGTTAACGCTCTTCATGGTCATACCAAGAAAACTCATCGCACAGATGTTCAGTGTAAGAATCGAATCGATACGATTAAGAAAAAGTATAAGGTTGAAAAAGCTAGGGTTACGGAATCTAATGGTGTTTTGAATTCTAATTGGCCTTTTTTTGAACGGTTAGATGTTTTGATTGGACCTAATTTCAGTGCTAAGAAGTTATCAATTTCTTCACCGGTGGCGGTGACACCGTCGCCGCCGGTGGCTCTTCCGTTGATTCCTCATCGGAAATTTGCTAATTCTGGTGGTTATTCATCACCTGCAATTGCGGTACATTCGACCGCAGTGGCGTTACCGCAGAAGAGGAATTATTCTGCTGTGGCTGCGGCTACGGCTACGGTTATGGATGATGGGTATTTTAGGAGGAATTATTCTGCGGTAGCTGCAGCCGCTGCTGCTGCGGAAGCTGATGAGGATGATGATGAGGATGATGAGGTGGAGGAAGTTGAGGAGGAAGAGGTGGAAGTAGAGGAAGAGGAAGGGAGGGGGAGTGAAGTGGATGAAGGGGATAAAGGGAGAGAAGGGATGAAGAGGTTGGCGAAGGCGATAGAGAGTTTTGGTGAAATGTATGAGAGAGTGGAAGAACAGAAACTGAGGCAGATGGTGGATTTGGAGAAACAAAGGATGCAGTTTGCTAAAGATCTTGAAGTGCAGAGGATGCAGATGTTTATGGATACTCAAGTTCAGCTGGAGAGAATTAAGCGTGGAAAACCATCTGGGTCTAATGGTGAGATATAAAGTAAAGTAATTTAAGCTTTTTAATTGTTTTTTGTTTCCCCTTTTAGCTTGTGATTTGATAATTTAATAACATAGACCGCATTGCTCAGTTTTTGTTTTTGTTTTTTAATGAACGAATGGTGTTATACTGTTATGCATGATAGGGCTTTTGGACCTGAGGACAGTGGGTCTCAAGGGTATGCTTCAATAA
Protein sequence

>MS.gene002579.t1

MPDFHHDSFTPPSRTVPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKVEKARVTESNGVLNSNWPFFERLDVLIGPNFSAKKLSISSPVAVTPSPPVALPLIPHRKFANSGGYSSPAIAVHSTAVALPQKRNYSAVAAATATAIESFGEMYERVEEQKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKPSGSNGLLDLRTVGLKGMLQ