AlfalfaGEDB | MS.gene002587

M. sativa cultivar XinJiangDaYe / MS.gene002587

KEGG: -
GO: GO:0000976 GO:0000981 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0035326 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002587.t1	XP_013462567.1	92.6	243	18	0	1	243	1	243	8.30E-122	446.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002587.t1	Q9FJK3	41.6	178	98	2	1	173	1	177	3.2e-29	130.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002587.t1	G7ZXK2	92.6	243	18	0	1	243	1	243	6.0e-122	446.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene002587.t1	TF	MADS-M-type

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002587.t1	MTR_2g016210	92.593	243	18	0	1	243	1	243	3.72e-169	466
MS.gene002587.t1	MTR_3g031100	41.991	231	125	3	1	227	1	226	1.84e-56	180
MS.gene002587.t1	MTR_3g466980	46.927	179	92	2	1	177	1	178	1.43e-48	159
MS.gene002587.t1	MTR_4g063790	45.509	167	91	0	1	167	1	167	3.98e-47	154
MS.gene002587.t1	MTR_3g467080	43.590	156	88	0	5	160	5	160	7.52e-41	138
MS.gene002587.t1	MTR_3g031240	42.945	163	93	0	1	163	1	163	2.66e-40	137
MS.gene002587.t1	MTR_8g036130	45.000	160	86	1	1	158	1	160	1.50e-38	134
MS.gene002587.t1	MTR_5g075380	37.342	158	98	1	1	158	1	157	7.38e-37	127
MS.gene002587.t1	MTR_3g465410	43.972	141	79	0	29	169	1	141	1.85e-36	126
MS.gene002587.t1	MTR_4g032620	37.000	200	112	2	1	200	1	186	4.87e-36	127

Showing 1 to 10 of 40 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002587.t1	AT5G48670	44.516	155	85	1	1	155	1	154	5.43e-32	119
MS.gene002587.t1	AT3G05860	36.723	177	107	2	1	175	1	174	5.99e-31	115
MS.gene002587.t1	AT3G05860	36.723	177	107	2	1	175	1	174	7.99e-31	113
MS.gene002587.t1	AT3G05860	36.723	177	107	2	1	175	1	174	9.70e-31	114
MS.gene002587.t1	AT1G65300	36.184	152	96	1	4	155	3	153	3.74e-29	111
MS.gene002587.t1	AT5G27960	36.129	155	94	2	4	156	2	153	2.35e-27	107
MS.gene002587.t1	AT5G26650	36.601	153	96	1	4	156	2	153	3.45e-27	107
MS.gene002587.t1	AT1G65330	35.099	151	97	1	5	155	4	153	5.24e-25	100
MS.gene002587.t1	AT2G28700	30.476	210	141	3	1	208	1	207	5.20e-23	95.9
MS.gene002587.t1	AT1G31640	33.775	151	94	3	5	153	4	150	8.25e-22	94.0

Showing 1 to 10 of 20 entries

Previous1 2Next

Find 62 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATCATGAAATGCTAACA+TGG	0.649787	2.1:+69451754	None:intergenic
AACATGGAGAAGTCCCAAGG+TGG	0.697499	2.1:+69451770	None:intergenic
AATAGGTAATGAGGGTAATA+AGG	0.250530	2.1:-69451909	MS.gene002587:CDS
AATGAGATCAGCACTCTATG+TGG	0.635571	2.1:-69452334	MS.gene002587:CDS
AATGGAGCAGAAGATATGAA+TGG	0.530854	2.1:-69451932	MS.gene002587:CDS
ACAATCTGAAGAAAATTGAT+TGG	0.445024	2.1:-69451997	MS.gene002587:CDS
ACAATGCTCAACCAGAGGTT+TGG	0.442796	2.1:-69452279	MS.gene002587:CDS
ACATAGCCAATTCATCGAGC+AGG	0.541522	2.1:-69452726	MS.gene002587:CDS
AGCATTTCATGATGTTAATA+CGG	0.402387	2.1:-69451747	MS.gene002587:CDS
AGCCAATTCATCGAGCAGGA+AGG	0.659357	2.1:-69452722	MS.gene002587:CDS

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACATCATGAAATGCTAACA+TGG	+	chr2.1:69452724-69452743	None:intergenic	30.0%
AATAGGTAATGAGGGTAATA+AGG	-	chr2.1:69452566-69452585	MS.gene002587:intron	30.0%
AATCGAACGAAGCAAAAATA+TGG	-	chr2.1:69452272-69452291	MS.gene002587:CDS	30.0%
AATTCAATCTCTTACTAGTG+AGG	+	chr2.1:69451941-69451960	None:intergenic	30.0%
ATAGGTAATGAGGGTAATAA+GGG	-	chr2.1:69452567-69452586	MS.gene002587:intron	30.0%
ATCTGAAGAAAATTGATTGG+AGG	-	chr2.1:69452481-69452500	MS.gene002587:intron	30.0%
ATGAATGGAATAGGTAATGA+GGG	-	chr2.1:69452558-69452577	MS.gene002587:intron	30.0%
ATTGAGATTTCGCTATACTT+TGG	+	chr2.1:69452320-69452339	None:intergenic	30.0%
GATGTTAATACGGACATAAA+TGG	-	chr2.1:69452738-69452757	MS.gene002587:CDS	30.0%
TATGAATGGAATAGGTAATG+AGG	-	chr2.1:69452557-69452576	MS.gene002587:intron	30.0%

Showing 1 to 10 of 73 entries

Previous1 2 3 4 5…8Next

Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	69451721	69452776	69451721	ID=MS.gene002587
chr2.1	mRNA	69451721	69452776	69451721	ID=MS.gene002587.t1;Parent=MS.gene002587
chr2.1	exon	69452698	69452776	69452698	ID=MS.gene002587.t1.exon1;Parent=MS.gene002587.t1
chr2.1	CDS	69452698	69452776	69452698	ID=cds.MS.gene002587.t1;Parent=MS.gene002587.t1
chr2.1	exon	69451721	69452373	69451721	ID=MS.gene002587.t1.exon2;Parent=MS.gene002587.t1
chr2.1	CDS	69451721	69452373	69451721	ID=cds.MS.gene002587.t1;Parent=MS.gene002587.t1

Gene Sequence

>MS.gene002587

ATGACTGGGAGGAAGGTTAAACTTGCATACATAGCCAATTCATCGAGCAGGAAGGCAAGCTACAAAAAAAGGAAAGCTGGTGAGAGATTAGTCGTTACTTATTTTCAATAAAGCGTGTATTAGCCATGCAAATTATATAGATGTTACCATTAGATAATGATTAATGGTATGAAAATGATTTAGGTTCATCAATTAAAATTGAAGCTACGAGTTATCTCCTCACTAGTAAGAGATTGAATTTAAACAAACTCAAGGGAGTTCAAATTAAATCTCATCTTAGACAATTATAAAATAATCATTATAGTTTCACTTTATTTTATTTTTTTGGTAAAAAAAAAAAAAACTTCTCTCTATTTTATTTTATTTTTTAAAAAATTCTACCACTATATATGTTTTTCAATAGGTTTGCTAAAGAAGGTTAATGAGATCAGCACTCTATGTGGGATAGAAGCATGCGCAATAATATTTGGTGAAAACAATGCTCAACCAGAGGTTTGGCCACAAGGTCCTGCAACAAGAAATGTGTTATCCAAGTTCCTACACTTGCCTGAAATCGAACGAAGCAAAAATATGGTGGATTTGACAGCTTACTTAAACCAAAGTATAGCGAAATCTCAATTGTTGTTGAAGAAACAAATGGAGGCAAACAAGAAGAATGAATTCGTCCAATTTATTACTAAAGTATTTAGTACTGGACAATATCGTCCCGAGGATGTGAACGTGAATGAGCTGAATGACCTGATGGCCTTTATAGATAACAATCTGAAGAAAATTGATTGGAGGTTGCAATCGACGGAAATTCAATCTCAAGAGGAAGCTGGAAATGGAGCAGAAGATATGAATGGAATAGGTAATGAGGGTAATAAGGGTGATGCATCAGGGCTGGTGAATGTAGGAGATATGCAAGCTAATATGGGACATGGTGCTGAGGTTCAAGGTTTGGATAGCAACATGAATTATGGCATGGAAAGTGATTATCAAGATCCACCTTGGGACTTCTCCATGTTAGCATTTCATGATGTTAATACGGACATAAATGGTCTTTGGTCTAACTAG

Protein sequence

>MS.gene002587.t1

MTGRKVKLAYIANSSSRKASYKKRKAGLLKKVNEISTLCGIEACAIIFGENNAQPEVWPQGPATRNVLSKFLHLPEIERSKNMVDLTAYLNQSIAKSQLLLKKQMEANKKNEFVQFITKVFSTGQYRPEDVNVNELNDLMAFIDNNLKKIDWRLQSTEIQSQEEAGNGAEDMNGIGNEGNKGDASGLVNVGDMQANMGHGAEVQGLDSNMNYGMESDYQDPPWDFSMLAFHDVNTDINGLWSN