Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002587.t1 | XP_013462567.1 | 92.6 | 243 | 18 | 0 | 1 | 243 | 1 | 243 | 8.30E-122 | 446.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002587.t1 | Q9FJK3 | 41.6 | 178 | 98 | 2 | 1 | 173 | 1 | 177 | 3.2e-29 | 130.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002587.t1 | G7ZXK2 | 92.6 | 243 | 18 | 0 | 1 | 243 | 1 | 243 | 6.0e-122 | 446.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene002587.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002587.t1 | MTR_2g016210 | 92.593 | 243 | 18 | 0 | 1 | 243 | 1 | 243 | 3.72e-169 | 466 |
MS.gene002587.t1 | MTR_3g031100 | 41.991 | 231 | 125 | 3 | 1 | 227 | 1 | 226 | 1.84e-56 | 180 |
MS.gene002587.t1 | MTR_3g466980 | 46.927 | 179 | 92 | 2 | 1 | 177 | 1 | 178 | 1.43e-48 | 159 |
MS.gene002587.t1 | MTR_4g063790 | 45.509 | 167 | 91 | 0 | 1 | 167 | 1 | 167 | 3.98e-47 | 154 |
MS.gene002587.t1 | MTR_3g467080 | 43.590 | 156 | 88 | 0 | 5 | 160 | 5 | 160 | 7.52e-41 | 138 |
MS.gene002587.t1 | MTR_3g031240 | 42.945 | 163 | 93 | 0 | 1 | 163 | 1 | 163 | 2.66e-40 | 137 |
MS.gene002587.t1 | MTR_8g036130 | 45.000 | 160 | 86 | 1 | 1 | 158 | 1 | 160 | 1.50e-38 | 134 |
MS.gene002587.t1 | MTR_5g075380 | 37.342 | 158 | 98 | 1 | 1 | 158 | 1 | 157 | 7.38e-37 | 127 |
MS.gene002587.t1 | MTR_3g465410 | 43.972 | 141 | 79 | 0 | 29 | 169 | 1 | 141 | 1.85e-36 | 126 |
MS.gene002587.t1 | MTR_4g032620 | 37.000 | 200 | 112 | 2 | 1 | 200 | 1 | 186 | 4.87e-36 | 127 |
MS.gene002587.t1 | MTR_3g065100 | 47.097 | 155 | 81 | 1 | 1 | 155 | 1 | 154 | 1.08e-35 | 127 |
MS.gene002587.t1 | MTR_4g031910 | 42.949 | 156 | 89 | 0 | 1 | 156 | 1 | 156 | 4.16e-34 | 122 |
MS.gene002587.t1 | MTR_4g032290 | 41.358 | 162 | 95 | 0 | 1 | 162 | 1 | 162 | 2.69e-29 | 110 |
MS.gene002587.t1 | MTR_2g035580 | 41.250 | 160 | 89 | 2 | 1 | 158 | 1 | 157 | 3.43e-29 | 107 |
MS.gene002587.t1 | MTR_4g032260 | 40.252 | 159 | 95 | 0 | 1 | 159 | 1 | 159 | 1.04e-28 | 106 |
MS.gene002587.t1 | MTR_1g090697 | 39.490 | 157 | 91 | 3 | 1 | 156 | 1 | 154 | 2.61e-28 | 105 |
MS.gene002587.t1 | MTR_1g077390 | 39.735 | 151 | 89 | 2 | 1 | 151 | 1 | 149 | 3.22e-28 | 105 |
MS.gene002587.t1 | MTR_3g466830 | 39.456 | 147 | 88 | 1 | 4 | 150 | 3 | 148 | 3.95e-28 | 105 |
MS.gene002587.t1 | MTR_5g047580 | 37.748 | 151 | 92 | 2 | 1 | 151 | 1 | 149 | 2.30e-27 | 103 |
MS.gene002587.t1 | MTR_2g035610 | 44.444 | 117 | 65 | 0 | 1 | 117 | 1 | 117 | 1.48e-25 | 97.4 |
MS.gene002587.t1 | MTR_1g090783 | 36.129 | 155 | 97 | 2 | 4 | 158 | 3 | 155 | 3.61e-25 | 97.4 |
MS.gene002587.t1 | MTR_1g077320 | 39.375 | 160 | 93 | 3 | 1 | 159 | 1 | 157 | 3.74e-24 | 94.7 |
MS.gene002587.t1 | MTR_1g090710 | 34.615 | 156 | 101 | 1 | 1 | 156 | 1 | 155 | 2.20e-23 | 92.8 |
MS.gene002587.t1 | MTR_7g011950 | 38.994 | 159 | 95 | 2 | 1 | 159 | 1 | 157 | 5.93e-23 | 91.7 |
MS.gene002587.t1 | MTR_3g466890 | 34.667 | 150 | 97 | 1 | 5 | 154 | 4 | 152 | 7.87e-23 | 91.7 |
MS.gene002587.t1 | MTR_4g028720 | 37.736 | 159 | 97 | 2 | 1 | 159 | 1 | 157 | 1.16e-21 | 88.2 |
MS.gene002587.t1 | MTR_4g028800 | 55.714 | 70 | 29 | 1 | 1 | 70 | 1 | 68 | 3.57e-21 | 84.3 |
MS.gene002587.t1 | MTR_3g093900 | 32.051 | 156 | 95 | 2 | 4 | 159 | 7 | 151 | 1.03e-20 | 90.9 |
MS.gene002587.t1 | MTR_1g084950 | 35.897 | 156 | 98 | 2 | 1 | 156 | 1 | 154 | 1.79e-20 | 85.1 |
MS.gene002587.t1 | MTR_1g077300 | 37.662 | 154 | 92 | 3 | 1 | 154 | 1 | 150 | 1.70e-19 | 82.4 |
MS.gene002587.t1 | MTR_4g019670 | 31.973 | 147 | 96 | 2 | 4 | 150 | 7 | 149 | 3.36e-18 | 83.6 |
MS.gene002587.t1 | MTR_7g106510 | 30.612 | 147 | 98 | 2 | 4 | 150 | 7 | 149 | 1.07e-17 | 82.0 |
MS.gene002587.t1 | MTR_3g466900 | 33.613 | 119 | 78 | 1 | 32 | 150 | 2 | 119 | 3.31e-15 | 70.5 |
MS.gene002587.t1 | MTR_3g466930 | 34.454 | 119 | 77 | 1 | 32 | 150 | 2 | 119 | 1.48e-14 | 68.6 |
MS.gene002587.t1 | MTR_4g045977 | 25.641 | 156 | 106 | 2 | 1 | 154 | 1 | 148 | 1.14e-13 | 70.1 |
MS.gene002587.t1 | MTR_1g114730 | 33.333 | 108 | 64 | 4 | 3 | 103 | 2 | 108 | 4.55e-13 | 68.2 |
MS.gene002587.t1 | MTR_5g047560 | 29.801 | 151 | 88 | 3 | 1 | 151 | 1 | 133 | 3.32e-12 | 62.8 |
MS.gene002587.t1 | MTR_4g107170 | 22.477 | 218 | 147 | 5 | 3 | 208 | 2 | 209 | 3.55e-12 | 64.7 |
MS.gene002587.t1 | MTR_6g018920 | 31.481 | 108 | 66 | 4 | 3 | 103 | 2 | 108 | 1.05e-11 | 63.9 |
MS.gene002587.t1 | MTR_6g005440 | 26.415 | 159 | 101 | 5 | 3 | 154 | 2 | 151 | 6.42e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002587.t1 | AT5G48670 | 44.516 | 155 | 85 | 1 | 1 | 155 | 1 | 154 | 5.43e-32 | 119 |
MS.gene002587.t1 | AT3G05860 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 5.99e-31 | 115 |
MS.gene002587.t1 | AT3G05860 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 7.99e-31 | 113 |
MS.gene002587.t1 | AT3G05860 | 36.723 | 177 | 107 | 2 | 1 | 175 | 1 | 174 | 9.70e-31 | 114 |
MS.gene002587.t1 | AT1G65300 | 36.184 | 152 | 96 | 1 | 4 | 155 | 3 | 153 | 3.74e-29 | 111 |
MS.gene002587.t1 | AT5G27960 | 36.129 | 155 | 94 | 2 | 4 | 156 | 2 | 153 | 2.35e-27 | 107 |
MS.gene002587.t1 | AT5G26650 | 36.601 | 153 | 96 | 1 | 4 | 156 | 2 | 153 | 3.45e-27 | 107 |
MS.gene002587.t1 | AT1G65330 | 35.099 | 151 | 97 | 1 | 5 | 155 | 4 | 153 | 5.24e-25 | 100 |
MS.gene002587.t1 | AT2G28700 | 30.476 | 210 | 141 | 3 | 1 | 208 | 1 | 207 | 5.20e-23 | 95.9 |
MS.gene002587.t1 | AT1G31640 | 33.775 | 151 | 94 | 3 | 5 | 153 | 4 | 150 | 8.25e-22 | 94.0 |
MS.gene002587.t1 | AT1G31630 | 31.973 | 147 | 98 | 2 | 5 | 151 | 4 | 148 | 9.58e-22 | 92.4 |
MS.gene002587.t1 | AT1G22590 | 30.380 | 158 | 106 | 1 | 1 | 158 | 1 | 154 | 4.00e-20 | 84.3 |
MS.gene002587.t1 | AT5G27810 | 40.860 | 93 | 55 | 0 | 29 | 121 | 1 | 93 | 1.41e-19 | 81.6 |
MS.gene002587.t1 | AT2G40210 | 35.915 | 142 | 89 | 1 | 1 | 142 | 1 | 140 | 3.18e-18 | 83.2 |
MS.gene002587.t1 | AT5G26580 | 31.210 | 157 | 89 | 3 | 1 | 155 | 1 | 140 | 2.23e-17 | 80.5 |
MS.gene002587.t1 | AT5G06500 | 29.630 | 162 | 110 | 2 | 1 | 161 | 1 | 159 | 4.11e-17 | 78.2 |
MS.gene002587.t1 | AT5G26630 | 33.548 | 155 | 102 | 1 | 1 | 155 | 1 | 154 | 2.44e-15 | 72.8 |
MS.gene002587.t1 | AT5G55690 | 45.455 | 77 | 34 | 3 | 3 | 71 | 2 | 78 | 4.52e-15 | 73.2 |
MS.gene002587.t1 | AT5G55690 | 45.455 | 77 | 34 | 3 | 3 | 71 | 2 | 78 | 4.52e-15 | 73.2 |
MS.gene002587.t1 | AT5G58890 | 42.308 | 78 | 38 | 2 | 1 | 71 | 1 | 78 | 9.29e-14 | 69.7 |
Find 62 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAATACTTTAGTAATAAAT+TGG | 0.225188 | 2.1:+69452089 | None:intergenic |
AATAGGTAATGAGGGTAATA+AGG | 0.250530 | 2.1:-69451909 | MS.gene002587:CDS |
AGGAGATATGCAAGCTAATA+TGG | 0.251220 | 2.1:-69451861 | MS.gene002587:CDS |
CTTCAGATTGTTATCTATAA+AGG | 0.253823 | 2.1:+69452009 | None:intergenic |
TTGGATAGCAACATGAATTA+TGG | 0.300972 | 2.1:-69451815 | MS.gene002587:CDS |
TTGATTATCGTTGTCATGAC+TGG | 0.313338 | 2.1:-69452769 | None:intergenic |
GAAGCATGCGCAATAATATT+TGG | 0.313391 | 2.1:-69452307 | MS.gene002587:CDS |
GATAACACATTTCTTGTTGC+AGG | 0.342611 | 2.1:+69452247 | None:intergenic |
GGTAATAAGGGTGATGCATC+AGG | 0.346713 | 2.1:-69451896 | MS.gene002587:CDS |
TGCCTTCCTGCTCGATGAAT+TGG | 0.351091 | 2.1:+69452720 | None:intergenic |
ATACGGACATAAATGGTCTT+TGG | 0.354339 | 2.1:-69451730 | MS.gene002587:CDS |
TTCAATAGGTTTGCTAAAGA+AGG | 0.384024 | 2.1:-69452359 | MS.gene002587:intron |
GCAGAAGATATGAATGGAAT+AGG | 0.400967 | 2.1:-69451926 | MS.gene002587:CDS |
AGCATTTCATGATGTTAATA+CGG | 0.402387 | 2.1:-69451747 | MS.gene002587:CDS |
ATTGTTGTTGAAGAAACAAA+TGG | 0.421492 | 2.1:-69452137 | MS.gene002587:CDS |
ATTGAGATTTCGCTATACTT+TGG | 0.431628 | 2.1:+69452158 | None:intergenic |
GATGTTAATACGGACATAAA+TGG | 0.434993 | 2.1:-69451737 | MS.gene002587:CDS |
GGACCTTGTGGCCAAACCTC+TGG | 0.435290 | 2.1:+69452268 | None:intergenic |
TGGTGCTGAGGTTCAAGGTT+TGG | 0.437569 | 2.1:-69451834 | MS.gene002587:CDS |
TCTCAAGAGGAAGCTGGAAA+TGG | 0.439401 | 2.1:-69451950 | MS.gene002587:CDS |
ACAATGCTCAACCAGAGGTT+TGG | 0.442796 | 2.1:-69452279 | MS.gene002587:CDS |
ACAATCTGAAGAAAATTGAT+TGG | 0.445024 | 2.1:-69451997 | MS.gene002587:CDS |
TTCAGGCAAGTGTAGGAACT+TGG | 0.447788 | 2.1:+69452225 | None:intergenic |
CTCATTCACGTTCACATCCT+CGG | 0.451043 | 2.1:+69452048 | None:intergenic |
ATAGGTAATGAGGGTAATAA+GGG | 0.483783 | 2.1:-69451908 | MS.gene002587:CDS |
GGACATGGTGCTGAGGTTCA+AGG | 0.490486 | 2.1:-69451839 | MS.gene002587:CDS |
ATTACTAAAGTATTTAGTAC+TGG | 0.490777 | 2.1:-69452082 | MS.gene002587:CDS |
TGTTATCTATAAAGGCCATC+AGG | 0.507830 | 2.1:+69452017 | None:intergenic |
TATGAATGGAATAGGTAATG+AGG | 0.512938 | 2.1:-69451918 | MS.gene002587:CDS |
CGTTGTCATGACTGGGAGGA+AGG | 0.514319 | 2.1:-69452761 | None:intergenic |
ATTCAATCTCAAGAGGAAGC+TGG | 0.518424 | 2.1:-69451956 | MS.gene002587:CDS |
TGATTATCGTTGTCATGACT+GGG | 0.518769 | 2.1:-69452768 | None:intergenic |
CAACCAGAGGTTTGGCCACA+AGG | 0.519368 | 2.1:-69452271 | MS.gene002587:CDS |
ATGAATGGAATAGGTAATGA+GGG | 0.529671 | 2.1:-69451917 | MS.gene002587:CDS |
AATGGAGCAGAAGATATGAA+TGG | 0.530854 | 2.1:-69451932 | MS.gene002587:CDS |
TCATTCACGTTCACATCCTC+GGG | 0.531270 | 2.1:+69452049 | None:intergenic |
ATCTGAAGAAAATTGATTGG+AGG | 0.531271 | 2.1:-69451994 | MS.gene002587:CDS |
GGAGATATGCAAGCTAATAT+GGG | 0.532480 | 2.1:-69451860 | MS.gene002587:CDS |
GTTCGATTTCAGGCAAGTGT+AGG | 0.534412 | 2.1:+69452218 | None:intergenic |
TTTCTTGTTGCAGGACCTTG+TGG | 0.537057 | 2.1:+69452256 | None:intergenic |
ACATAGCCAATTCATCGAGC+AGG | 0.541522 | 2.1:-69452726 | MS.gene002587:CDS |
TGATTGGAGGTTGCAATCGA+CGG | 0.558130 | 2.1:-69451981 | MS.gene002587:CDS |
TAAGGGTGATGCATCAGGGC+TGG | 0.558559 | 2.1:-69451891 | MS.gene002587:CDS |
TGATTATCAAGATCCACCTT+GGG | 0.562050 | 2.1:-69451783 | MS.gene002587:CDS |
GTGATTATCAAGATCCACCT+TGG | 0.566592 | 2.1:-69451784 | MS.gene002587:CDS |
TAGCAACATGAATTATGGCA+TGG | 0.605759 | 2.1:-69451810 | MS.gene002587:CDS |
GACGGAAATTCAATCTCAAG+AGG | 0.615492 | 2.1:-69451963 | MS.gene002587:CDS |
GCATCAGGGCTGGTGAATGT+AGG | 0.618345 | 2.1:-69451881 | MS.gene002587:CDS |
ATGAGATCAGCACTCTATGT+GGG | 0.619663 | 2.1:-69452333 | MS.gene002587:CDS |
AATGAGATCAGCACTCTATG+TGG | 0.635571 | 2.1:-69452334 | MS.gene002587:CDS |
TAATATGGGACATGGTGCTG+AGG | 0.638411 | 2.1:-69451846 | MS.gene002587:CDS |
GAATGAGCTGAATGACCTGA+TGG | 0.641130 | 2.1:-69452032 | MS.gene002587:CDS |
ATGCAAGCTAATATGGGACA+TGG | 0.644357 | 2.1:-69451854 | MS.gene002587:CDS |
AACATCATGAAATGCTAACA+TGG | 0.649787 | 2.1:+69451754 | None:intergenic |
GTAATAAGGGTGATGCATCA+GGG | 0.652229 | 2.1:-69451895 | MS.gene002587:CDS |
GTTGTTGAAGAAACAAATGG+AGG | 0.654091 | 2.1:-69452134 | MS.gene002587:CDS |
AGCCAATTCATCGAGCAGGA+AGG | 0.659357 | 2.1:-69452722 | MS.gene002587:CDS |
GCTAACATGGAGAAGTCCCA+AGG | 0.667501 | 2.1:+69451767 | None:intergenic |
TACTGGACAATATCGTCCCG+AGG | 0.674998 | 2.1:-69452065 | MS.gene002587:CDS |
TGAAAACAATGCTCAACCAG+AGG | 0.685492 | 2.1:-69452284 | MS.gene002587:CDS |
AACATGGAGAAGTCCCAAGG+TGG | 0.697499 | 2.1:+69451770 | None:intergenic |
TTATCGTTGTCATGACTGGG+AGG | 0.712263 | 2.1:-69452765 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAATACTTTAGTAATAAAT+TGG | + | chr2.1:69452389-69452408 | None:intergenic | 10.0% |
!!! | TTCACTTTATTTTATTTTTT+TGG | - | chr2.1:69452026-69452045 | MS.gene002587:CDS | 10.0% |
!! | ATTGAATTTAAACAAACTCA+AGG | - | chr2.1:69451953-69451972 | MS.gene002587:CDS | 20.0% |
!! | CTATTGAAAAACATATATAG+TGG | + | chr2.1:69452104-69452123 | None:intergenic | 20.0% |
!! | TAATGGTATGAAAATGATTT+AGG | - | chr2.1:69451882-69451901 | MS.gene002587:CDS | 20.0% |
!! | TACCATTAATCATTATCTAA+TGG | + | chr2.1:69451870-69451889 | None:intergenic | 20.0% |
!! | TACCATTAGATAATGATTAA+TGG | - | chr2.1:69451865-69451884 | MS.gene002587:CDS | 20.0% |
!! | TTGAATTTAAACAAACTCAA+GGG | - | chr2.1:69451954-69451973 | MS.gene002587:CDS | 20.0% |
!!! | ATTACTAAAGTATTTAGTAC+TGG | - | chr2.1:69452393-69452412 | MS.gene002587:intron | 20.0% |
!!! | CACTATATATGTTTTTCAAT+AGG | - | chr2.1:69452102-69452121 | MS.gene002587:CDS | 20.0% |
!!! | TAACATCTATATAATTTGCA+TGG | + | chr2.1:69451847-69451866 | None:intergenic | 20.0% |
! | ACAATCTGAAGAAAATTGAT+TGG | - | chr2.1:69452478-69452497 | MS.gene002587:intron | 25.0% |
! | AGCATTTCATGATGTTAATA+CGG | - | chr2.1:69452728-69452747 | MS.gene002587:CDS | 25.0% |
! | CTTCAGATTGTTATCTATAA+AGG | + | chr2.1:69452469-69452488 | None:intergenic | 25.0% |
!! | ATTGTTGTTGAAGAAACAAA+TGG | - | chr2.1:69452338-69452357 | MS.gene002587:CDS | 25.0% |
AACATCATGAAATGCTAACA+TGG | + | chr2.1:69452724-69452743 | None:intergenic | 30.0% | |
AATAGGTAATGAGGGTAATA+AGG | - | chr2.1:69452566-69452585 | MS.gene002587:intron | 30.0% | |
AATCGAACGAAGCAAAAATA+TGG | - | chr2.1:69452272-69452291 | MS.gene002587:CDS | 30.0% | |
AATTCAATCTCTTACTAGTG+AGG | + | chr2.1:69451941-69451960 | None:intergenic | 30.0% | |
ATAGGTAATGAGGGTAATAA+GGG | - | chr2.1:69452567-69452586 | MS.gene002587:intron | 30.0% | |
ATCTGAAGAAAATTGATTGG+AGG | - | chr2.1:69452481-69452500 | MS.gene002587:intron | 30.0% | |
ATGAATGGAATAGGTAATGA+GGG | - | chr2.1:69452558-69452577 | MS.gene002587:intron | 30.0% | |
ATTGAGATTTCGCTATACTT+TGG | + | chr2.1:69452320-69452339 | None:intergenic | 30.0% | |
GATGTTAATACGGACATAAA+TGG | - | chr2.1:69452738-69452757 | MS.gene002587:CDS | 30.0% | |
TATGAATGGAATAGGTAATG+AGG | - | chr2.1:69452557-69452576 | MS.gene002587:intron | 30.0% | |
TTGGATAGCAACATGAATTA+TGG | - | chr2.1:69452660-69452679 | MS.gene002587:intron | 30.0% | |
!! | TTCAATAGGTTTGCTAAAGA+AGG | - | chr2.1:69452116-69452135 | MS.gene002587:CDS | 30.0% |
AATGGAGCAGAAGATATGAA+TGG | - | chr2.1:69452543-69452562 | MS.gene002587:intron | 35.0% | |
AGCTACAAAAAAAGGAAAGC+TGG | - | chr2.1:69451778-69451797 | MS.gene002587:CDS | 35.0% | |
AGGAGATATGCAAGCTAATA+TGG | - | chr2.1:69452614-69452633 | MS.gene002587:intron | 35.0% | |
ATACGGACATAAATGGTCTT+TGG | - | chr2.1:69452745-69452764 | MS.gene002587:CDS | 35.0% | |
GAAGCATGCGCAATAATATT+TGG | - | chr2.1:69452168-69452187 | MS.gene002587:CDS | 35.0% | |
GATAACACATTTCTTGTTGC+AGG | + | chr2.1:69452231-69452250 | None:intergenic | 35.0% | |
GCAGAAGATATGAATGGAAT+AGG | - | chr2.1:69452549-69452568 | MS.gene002587:intron | 35.0% | |
GGAGATATGCAAGCTAATAT+GGG | - | chr2.1:69452615-69452634 | MS.gene002587:intron | 35.0% | |
GTTGTTGAAGAAACAAATGG+AGG | - | chr2.1:69452341-69452360 | MS.gene002587:CDS | 35.0% | |
TAGCAACATGAATTATGGCA+TGG | - | chr2.1:69452665-69452684 | MS.gene002587:intron | 35.0% | |
TGATTATCAAGATCCACCTT+GGG | - | chr2.1:69452692-69452711 | MS.gene002587:intron | 35.0% | |
TGTTATCTATAAAGGCCATC+AGG | + | chr2.1:69452461-69452480 | None:intergenic | 35.0% | |
! | TTTTTGCTTCGTTCGATTTC+AGG | + | chr2.1:69452270-69452289 | None:intergenic | 35.0% |
AATGAGATCAGCACTCTATG+TGG | - | chr2.1:69452141-69452160 | MS.gene002587:CDS | 40.0% | |
ATGAGATCAGCACTCTATGT+GGG | - | chr2.1:69452142-69452161 | MS.gene002587:CDS | 40.0% | |
ATGCAAGCTAATATGGGACA+TGG | - | chr2.1:69452621-69452640 | MS.gene002587:intron | 40.0% | |
ATTCAATCTCAAGAGGAAGC+TGG | - | chr2.1:69452519-69452538 | MS.gene002587:intron | 40.0% | |
CGAACGAAGCAAAAATATGG+TGG | - | chr2.1:69452275-69452294 | MS.gene002587:CDS | 40.0% | |
GACGGAAATTCAATCTCAAG+AGG | - | chr2.1:69452512-69452531 | MS.gene002587:intron | 40.0% | |
GGAAGGCAAGCTACAAAAAA+AGG | - | chr2.1:69451770-69451789 | MS.gene002587:CDS | 40.0% | |
GTAATAAGGGTGATGCATCA+GGG | - | chr2.1:69452580-69452599 | MS.gene002587:intron | 40.0% | |
GTGATTATCAAGATCCACCT+TGG | - | chr2.1:69452691-69452710 | MS.gene002587:intron | 40.0% | |
TGAAAACAATGCTCAACCAG+AGG | - | chr2.1:69452191-69452210 | MS.gene002587:CDS | 40.0% | |
ACAATGCTCAACCAGAGGTT+TGG | - | chr2.1:69452196-69452215 | MS.gene002587:CDS | 45.0% | |
ACATAGCCAATTCATCGAGC+AGG | - | chr2.1:69451749-69451768 | MS.gene002587:CDS | 45.0% | |
CTCATTCACGTTCACATCCT+CGG | + | chr2.1:69452430-69452449 | None:intergenic | 45.0% | |
GAATGAGCTGAATGACCTGA+TGG | - | chr2.1:69452443-69452462 | MS.gene002587:intron | 45.0% | |
GGTAATAAGGGTGATGCATC+AGG | - | chr2.1:69452579-69452598 | MS.gene002587:intron | 45.0% | |
GTTCGATTTCAGGCAAGTGT+AGG | + | chr2.1:69452260-69452279 | None:intergenic | 45.0% | |
TCATTCACGTTCACATCCTC+GGG | + | chr2.1:69452429-69452448 | None:intergenic | 45.0% | |
TCTCAAGAGGAAGCTGGAAA+TGG | - | chr2.1:69452525-69452544 | MS.gene002587:intron | 45.0% | |
TGATTGGAGGTTGCAATCGA+CGG | - | chr2.1:69452494-69452513 | MS.gene002587:intron | 45.0% | |
TTCAGGCAAGTGTAGGAACT+TGG | + | chr2.1:69452253-69452272 | None:intergenic | 45.0% | |
TTTCTTGTTGCAGGACCTTG+TGG | + | chr2.1:69452222-69452241 | None:intergenic | 45.0% | |
! | TAATATGGGACATGGTGCTG+AGG | - | chr2.1:69452629-69452648 | MS.gene002587:intron | 45.0% |
AACATGGAGAAGTCCCAAGG+TGG | + | chr2.1:69452708-69452727 | None:intergenic | 50.0% | |
AGCCAATTCATCGAGCAGGA+AGG | - | chr2.1:69451753-69451772 | MS.gene002587:CDS | 50.0% | |
GCTAACATGGAGAAGTCCCA+AGG | + | chr2.1:69452711-69452730 | None:intergenic | 50.0% | |
TACTGGACAATATCGTCCCG+AGG | - | chr2.1:69452410-69452429 | MS.gene002587:intron | 50.0% | |
TGCCTTCCTGCTCGATGAAT+TGG | + | chr2.1:69451758-69451777 | None:intergenic | 50.0% | |
! | TGGTGCTGAGGTTCAAGGTT+TGG | - | chr2.1:69452641-69452660 | MS.gene002587:intron | 50.0% |
CAACCAGAGGTTTGGCCACA+AGG | - | chr2.1:69452204-69452223 | MS.gene002587:CDS | 55.0% | |
TAAGGGTGATGCATCAGGGC+TGG | - | chr2.1:69452584-69452603 | MS.gene002587:intron | 55.0% | |
! | GCATCAGGGCTGGTGAATGT+AGG | - | chr2.1:69452594-69452613 | MS.gene002587:intron | 55.0% |
! | GGACATGGTGCTGAGGTTCA+AGG | - | chr2.1:69452636-69452655 | MS.gene002587:intron | 55.0% |
GGACCTTGTGGCCAAACCTC+TGG | + | chr2.1:69452210-69452229 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 69451721 | 69452776 | 69451721 | ID=MS.gene002587 |
chr2.1 | mRNA | 69451721 | 69452776 | 69451721 | ID=MS.gene002587.t1;Parent=MS.gene002587 |
chr2.1 | exon | 69452698 | 69452776 | 69452698 | ID=MS.gene002587.t1.exon1;Parent=MS.gene002587.t1 |
chr2.1 | CDS | 69452698 | 69452776 | 69452698 | ID=cds.MS.gene002587.t1;Parent=MS.gene002587.t1 |
chr2.1 | exon | 69451721 | 69452373 | 69451721 | ID=MS.gene002587.t1.exon2;Parent=MS.gene002587.t1 |
chr2.1 | CDS | 69451721 | 69452373 | 69451721 | ID=cds.MS.gene002587.t1;Parent=MS.gene002587.t1 |
Gene Sequence |
Protein sequence |